Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1316820 | sp|A8MR21|IP5PA_ARATH | 58.581 | 437 | 150 | 5 | 5 | 423 | 33 | 456 | 6.06e-176 | 503 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1316820 | A0A396GGW0 | 96.009 | 451 | 5 | 1 | 1 | 451 | 53 | 490 | 0.0 | 900 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0013050 | Msa1316820 | -0.808012 | 3.817837e-50 | -8.615850e-47 |
| Msa0032610 | Msa1316820 | 0.804849 | 1.773245e-49 | -8.615850e-47 |
| Msa0039330 | Msa1316820 | 0.806031 | 1.001924e-49 | -8.615850e-47 |
| Msa0069260 | Msa1316820 | 0.823582 | 1.281800e-53 | -8.615850e-47 |
| Msa0069280 | Msa1316820 | 0.812661 | 3.788950e-51 | -8.615850e-47 |
| Msa0069310 | Msa1316820 | 0.839111 | 1.926295e-57 | -8.615850e-47 |
| Msa0623080 | Msa1316820 | 0.811713 | 6.100741e-51 | -8.615850e-47 |
| Msa0654010 | Msa1316820 | 0.806059 | 9.886579e-50 | -8.615850e-47 |
| Msa0662650 | Msa1316820 | 0.800269 | 1.560061e-48 | -8.615850e-47 |
| Msa0743260 | Msa1316820 | 0.823922 | 1.066986e-53 | -8.615850e-47 |
| Msa0832490 | Msa1316820 | 0.825836 | 3.771260e-54 | -8.615850e-47 |
| Msa0140390 | Msa1316820 | 0.809958 | 1.462938e-50 | -8.615850e-47 |
| Msa0148120 | Msa1316820 | 0.818853 | 1.577953e-52 | -8.615850e-47 |
| Msa0156650 | Msa1316820 | -0.821298 | 4.349858e-53 | -8.615850e-47 |
| Msa0172780 | Msa1316820 | 0.809814 | 1.570608e-50 | -8.615850e-47 |
| Msa0223410 | Msa1316820 | -0.814045 | 1.881447e-51 | -8.615850e-47 |
| Msa1233890 | Msa1316820 | 0.800571 | 1.354037e-48 | -8.615850e-47 |
| Msa1236070 | Msa1316820 | -0.800583 | 1.346440e-48 | -8.615850e-47 |
| Msa1269580 | Msa1316820 | -0.802715 | 4.919819e-49 | -8.615850e-47 |
| Msa1271210 | Msa1316820 | 0.810956 | 8.906930e-51 | -8.615850e-47 |
| Msa1300350 | Msa1316820 | -0.801102 | 1.054668e-48 | -8.615850e-47 |
| Msa1316820 | Msa1362880 | 0.821926 | 3.113481e-53 | -8.615850e-47 |
| Msa1316820 | Msa1369530 | 0.801168 | 1.022528e-48 | -8.615850e-47 |
| Msa1316820 | Msa1390120 | 0.840829 | 6.869370e-58 | -8.615850e-47 |
| Msa1316820 | Msa1395530 | 0.847234 | 1.315156e-59 | -8.615850e-47 |
| Msa1316820 | Msa1417830 | -0.812786 | 3.557933e-51 | -8.615850e-47 |
| Msa1316820 | Msa1429360 | -0.801601 | 8.336744e-49 | -8.615850e-47 |
| Msa1316820 | Msa1438700 | 0.817202 | 3.726156e-52 | -8.615850e-47 |
| Msa1316820 | Msa1445420 | -0.810343 | 1.208375e-50 | -8.615850e-47 |
| Msa1316820 | Msa1451620 | -0.818739 | 1.674654e-52 | -8.615850e-47 |
| Msa1316820 | Msa1461250 | -0.802290 | 6.017395e-49 | -8.615850e-47 |
| Msa0365490 | Msa1316820 | 0.811650 | 6.296631e-51 | -8.615850e-47 |
| Msa0381620 | Msa1316820 | -0.814635 | 1.393395e-51 | -8.615850e-47 |
| Msa0404000 | Msa1316820 | 0.804281 | 2.329245e-49 | -8.615850e-47 |
| Msa0404030 | Msa1316820 | 0.832756 | 7.880869e-56 | -8.615850e-47 |
| Msa0414950 | Msa1316820 | -0.840032 | 1.109725e-57 | -8.615850e-47 |
| Msa0436280 | Msa1316820 | -0.801045 | 1.083541e-48 | -8.615850e-47 |
| Msa0442850 | Msa1316820 | 0.803185 | 3.932093e-49 | -8.615850e-47 |
| Msa0459770 | Msa1316820 | -0.813909 | 2.016149e-51 | -8.615850e-47 |
| Msa0467900 | Msa1316820 | -0.804300 | 2.307906e-49 | -8.615850e-47 |
| Msa0468130 | Msa1316820 | 0.803953 | 2.725253e-49 | -8.615850e-47 |
| Msa0473240 | Msa1316820 | 0.820508 | 6.609496e-53 | -8.615850e-47 |
| Msa0480320 | Msa1316820 | 0.814738 | 1.322196e-51 | -8.615850e-47 |
| Msa0981820 | Msa1316820 | -0.800652 | 1.303303e-48 | -8.615850e-47 |
| Msa0982270 | Msa1316820 | 0.809833 | 1.556262e-50 | -8.615850e-47 |
| Msa0992490 | Msa1316820 | -0.804374 | 2.227002e-49 | -8.615850e-47 |
| Msa0996170 | Msa1316820 | 0.808751 | 2.654938e-50 | -8.615850e-47 |
| Msa1004900 | Msa1316820 | -0.823817 | 1.129153e-53 | -8.615850e-47 |
| Msa1021340 | Msa1316820 | 0.803775 | 2.967219e-49 | -8.615850e-47 |
| Msa1039880 | Msa1316820 | 0.811763 | 5.950396e-51 | -8.615850e-47 |
| Msa1075220 | Msa1316820 | -0.808111 | 3.635893e-50 | -8.615850e-47 |
| Msa1085920 | Msa1316820 | 0.810837 | 9.452077e-51 | -8.615850e-47 |
| Msa1095480 | Msa1316820 | 0.802433 | 5.623534e-49 | -8.615850e-47 |
| Msa0249560 | Msa1316820 | 0.803992 | 2.674589e-49 | -8.615850e-47 |
| Msa0269450 | Msa1316820 | 0.804355 | 2.247981e-49 | -8.615850e-47 |
| Msa0272480 | Msa1316820 | -0.805337 | 1.401848e-49 | -8.615850e-47 |
| Msa0307110 | Msa1316820 | 0.803003 | 4.289297e-49 | -8.615850e-47 |
| Msa0323080 | Msa1316820 | 0.821718 | 3.478573e-53 | -8.615850e-47 |
| Msa0335040 | Msa1316820 | 0.809492 | 1.842466e-50 | -8.615850e-47 |
| Msa0351030 | Msa1316820 | 0.806552 | 7.783886e-50 | -8.615850e-47 |
| Msa0351080 | Msa1316820 | 0.831521 | 1.592941e-55 | -8.615850e-47 |
| Msa1162550 | Msa1316820 | -0.800291 | 1.544011e-48 | -8.615850e-47 |
| Msa1205010 | Msa1316820 | -0.801359 | 9.345613e-49 | -8.615850e-47 |
| Msa1217430 | Msa1316820 | -0.802997 | 4.301415e-49 | -8.615850e-47 |
| Msa0530850 | Msa1316820 | 0.803888 | 2.811968e-49 | -8.615850e-47 |
| Msa0531990 | Msa1316820 | -0.813947 | 1.977804e-51 | -8.615850e-47 |
| Msa0532100 | Msa1316820 | -0.815293 | 9.955372e-52 | -8.615850e-47 |
| Msa0553220 | Msa1316820 | -0.825850 | 3.742777e-54 | -8.615850e-47 |
| Msa0562440 | Msa1316820 | 0.829931 | 3.904577e-55 | -8.615850e-47 |
| Msa0935850 | Msa1316820 | 0.803622 | 3.192251e-49 | -8.615850e-47 |
| Msa0976250 | Msa1316820 | 0.808752 | 2.653558e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1316820 | MtrunA17_Chr8g0355021 | 96.009 | 451 | 5 | 1 | 1 | 451 | 53 | 490 | 0.0 | 900 |
| Msa1316820 | MtrunA17_Chr8g0382571 | 54.526 | 464 | 182 | 6 | 1 | 450 | 30 | 478 | 5.21e-175 | 499 |
| Msa1316820 | MtrunA17_Chr7g0260081 | 46.414 | 474 | 202 | 9 | 7 | 444 | 89 | 546 | 9.50e-138 | 407 |
| Msa1316820 | MtrunA17_Chr1g0185281 | 46.799 | 453 | 196 | 8 | 7 | 428 | 89 | 527 | 5.83e-133 | 394 |
| Msa1316820 | MtrunA17_Chr1g0205121 | 42.942 | 503 | 203 | 9 | 7 | 444 | 89 | 572 | 3.02e-128 | 383 |
| Msa1316820 | MtrunA17_Chr5g0394901 | 58.077 | 260 | 106 | 2 | 187 | 444 | 353 | 611 | 1.82e-106 | 328 |
| Msa1316820 | MtrunA17_Chr5g0394901 | 50.000 | 86 | 30 | 1 | 7 | 92 | 91 | 163 | 1.74e-19 | 91.3 |
| Msa1316820 | MtrunA17_Chr1g0165011 | 40.618 | 421 | 176 | 10 | 7 | 423 | 61 | 411 | 1.84e-97 | 300 |
| Msa1316820 | MtrunA17_Chr6g0479511 | 37.890 | 417 | 182 | 7 | 8 | 423 | 44 | 384 | 2.82e-96 | 295 |
| Msa1316820 | MtrunA17_Chr7g0263111 | 54.435 | 248 | 103 | 2 | 187 | 434 | 170 | 407 | 1.06e-91 | 285 |
| Msa1316820 | MtrunA17_Chr7g0263111 | 52.381 | 84 | 27 | 1 | 9 | 92 | 88 | 158 | 1.55e-18 | 87.8 |
| Msa1316820 | MtrunA17_Chr6g0452181 | 47.719 | 285 | 138 | 4 | 165 | 445 | 140 | 417 | 1.93e-87 | 274 |
| Msa1316820 | MtrunA17_Chr4g0054941 | 35.983 | 478 | 231 | 14 | 12 | 424 | 75 | 542 | 4.83e-87 | 276 |
| Msa1316820 | MtrunA17_Chr1g0201271 | 55.508 | 236 | 98 | 3 | 188 | 423 | 371 | 599 | 1.43e-86 | 277 |
| Msa1316820 | MtrunA17_Chr1g0201271 | 38.824 | 85 | 39 | 1 | 8 | 92 | 100 | 171 | 1.76e-12 | 69.3 |
| Msa1316820 | MtrunA17_Chr6g0466801 | 55.462 | 238 | 95 | 4 | 188 | 423 | 369 | 597 | 5.85e-85 | 273 |
| Msa1316820 | MtrunA17_Chr6g0466801 | 40.698 | 86 | 38 | 1 | 7 | 92 | 95 | 167 | 4.64e-13 | 71.2 |
| Msa1316820 | MtrunA17_Chr4g0054951 | 48.227 | 282 | 133 | 4 | 163 | 437 | 278 | 553 | 1.91e-82 | 265 |
| Msa1316820 | MtrunA17_Chr4g0054951 | 37.647 | 85 | 40 | 1 | 12 | 96 | 78 | 149 | 3.81e-11 | 65.1 |
| Msa1316820 | MtrunA17_Chr5g0400311 | 48.000 | 275 | 135 | 4 | 164 | 437 | 343 | 610 | 2.20e-82 | 266 |
| Msa1316820 | MtrunA17_Chr5g0400311 | 43.182 | 88 | 37 | 1 | 12 | 99 | 108 | 182 | 4.31e-14 | 74.7 |
| Msa1316820 | MtrunA17_Chr8g0375751 | 51.464 | 239 | 108 | 3 | 188 | 423 | 146 | 379 | 8.85e-80 | 253 |
| Msa1316820 | MtrunA17_Chr8g0375751 | 40.698 | 86 | 37 | 2 | 8 | 92 | 58 | 130 | 3.46e-12 | 68.2 |
| Msa1316820 | MtrunA17_Chr1g0189231 | 26.966 | 267 | 152 | 7 | 191 | 421 | 611 | 870 | 7.29e-24 | 105 |
| Msa1316820 | MtrunA17_Chr1g0154491 | 30.144 | 209 | 121 | 9 | 224 | 423 | 143 | 335 | 1.69e-15 | 77.4 |
| Msa1316820 | MtrunA17_Chr6g0488541 | 32.692 | 156 | 86 | 4 | 292 | 431 | 802 | 954 | 1.58e-14 | 76.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1316820 | AT5G04980.1 | 58.581 | 437 | 150 | 5 | 5 | 423 | 4 | 427 | 5.87e-177 | 502 |
| Msa1316820 | AT5G04980.3 | 58.581 | 437 | 150 | 5 | 5 | 423 | 4 | 427 | 5.87e-177 | 502 |
| Msa1316820 | AT5G04980.2 | 58.581 | 437 | 150 | 5 | 5 | 423 | 33 | 456 | 6.16e-177 | 503 |
| Msa1316820 | AT5G04980.4 | 61.518 | 382 | 129 | 4 | 60 | 423 | 11 | 392 | 4.55e-163 | 466 |
| Msa1316820 | AT5G65090.2 | 49.064 | 481 | 198 | 12 | 1 | 450 | 1 | 465 | 4.27e-154 | 445 |
| Msa1316820 | AT5G65090.3 | 49.064 | 481 | 198 | 12 | 1 | 450 | 64 | 528 | 2.53e-153 | 446 |
| Msa1316820 | AT5G65090.1 | 49.064 | 481 | 198 | 12 | 1 | 450 | 64 | 528 | 2.53e-153 | 446 |
| Msa1316820 | AT3G63240.2 | 45.417 | 480 | 202 | 10 | 7 | 449 | 85 | 541 | 9.47e-133 | 394 |
| Msa1316820 | AT3G63240.1 | 45.417 | 480 | 202 | 10 | 7 | 449 | 85 | 541 | 9.47e-133 | 394 |
| Msa1316820 | AT2G32010.2 | 43.444 | 511 | 201 | 11 | 7 | 444 | 88 | 583 | 1.92e-129 | 387 |
| Msa1316820 | AT2G32010.1 | 43.444 | 511 | 201 | 11 | 7 | 444 | 88 | 583 | 1.92e-129 | 387 |
| Msa1316820 | AT2G32010.4 | 43.444 | 511 | 201 | 11 | 7 | 444 | 88 | 583 | 1.92e-129 | 387 |
| Msa1316820 | AT2G32010.3 | 43.444 | 511 | 201 | 11 | 7 | 444 | 88 | 583 | 1.92e-129 | 387 |
| Msa1316820 | AT2G37440.1 | 46.445 | 422 | 154 | 8 | 9 | 430 | 82 | 431 | 1.20e-121 | 363 |
| Msa1316820 | AT2G37440.3 | 46.445 | 422 | 154 | 8 | 9 | 430 | 82 | 431 | 1.20e-121 | 363 |
| Msa1316820 | AT1G05470.2 | 55.894 | 263 | 113 | 2 | 184 | 444 | 345 | 606 | 1.00e-103 | 322 |
| Msa1316820 | AT1G05470.2 | 34.392 | 189 | 88 | 5 | 7 | 172 | 89 | 264 | 1.81e-20 | 94.7 |
| Msa1316820 | AT1G05470.1 | 55.894 | 263 | 113 | 2 | 184 | 444 | 345 | 606 | 1.00e-103 | 322 |
| Msa1316820 | AT1G05470.1 | 34.392 | 189 | 88 | 5 | 7 | 172 | 89 | 264 | 1.81e-20 | 94.7 |
| Msa1316820 | AT2G37440.2 | 55.814 | 258 | 108 | 4 | 173 | 430 | 99 | 350 | 1.79e-97 | 298 |
| Msa1316820 | AT2G37440.2 | 52.688 | 93 | 38 | 2 | 12 | 98 | 1 | 93 | 1.15e-19 | 90.9 |
| Msa1316820 | AT2G01900.1 | 46.545 | 275 | 142 | 2 | 163 | 437 | 127 | 396 | 2.43e-83 | 263 |
| Msa1316820 | AT2G01900.1 | 40.196 | 102 | 41 | 3 | 9 | 103 | 57 | 145 | 1.14e-13 | 73.2 |
| Msa1316820 | AT2G01900.3 | 46.545 | 275 | 142 | 2 | 163 | 437 | 135 | 404 | 3.13e-83 | 263 |
| Msa1316820 | AT2G01900.3 | 40.196 | 102 | 41 | 3 | 9 | 103 | 65 | 153 | 1.10e-13 | 73.2 |
| Msa1316820 | AT1G34120.5 | 47.600 | 250 | 124 | 3 | 178 | 424 | 169 | 414 | 2.64e-79 | 253 |
| Msa1316820 | AT4G18010.1 | 45.865 | 266 | 140 | 2 | 184 | 449 | 385 | 646 | 2.89e-78 | 256 |
| Msa1316820 | AT4G18010.1 | 38.053 | 113 | 43 | 3 | 7 | 119 | 108 | 193 | 7.18e-14 | 74.3 |
| Msa1316820 | AT2G01900.2 | 45.091 | 275 | 137 | 3 | 163 | 437 | 127 | 387 | 7.24e-78 | 248 |
| Msa1316820 | AT2G01900.2 | 40.196 | 102 | 41 | 3 | 9 | 103 | 57 | 145 | 1.06e-13 | 73.2 |
| Msa1316820 | AT1G34120.1 | 47.600 | 250 | 124 | 3 | 178 | 424 | 320 | 565 | 3.99e-77 | 251 |
| Msa1316820 | AT1G34120.1 | 44.444 | 81 | 32 | 1 | 12 | 92 | 103 | 170 | 5.73e-14 | 74.3 |
| Msa1316820 | AT1G34120.2 | 47.600 | 250 | 124 | 3 | 178 | 424 | 324 | 569 | 4.23e-77 | 251 |
| Msa1316820 | AT1G34120.2 | 44.444 | 81 | 32 | 1 | 12 | 92 | 107 | 174 | 5.92e-14 | 74.3 |
| Msa1316820 | AT1G34120.3 | 47.200 | 250 | 124 | 4 | 178 | 424 | 324 | 568 | 1.33e-74 | 245 |
| Msa1316820 | AT1G34120.3 | 44.444 | 81 | 32 | 1 | 12 | 92 | 107 | 174 | 5.96e-14 | 74.3 |
| Msa1316820 | AT1G71710.1 | 45.882 | 255 | 131 | 3 | 188 | 441 | 408 | 656 | 6.08e-73 | 242 |
| Msa1316820 | AT1G71710.1 | 42.353 | 85 | 36 | 1 | 8 | 92 | 126 | 197 | 1.20e-14 | 76.6 |
| Msa1316820 | AT1G71710.2 | 45.882 | 255 | 131 | 3 | 188 | 441 | 399 | 647 | 6.16e-73 | 242 |
| Msa1316820 | AT1G71710.2 | 42.353 | 85 | 36 | 1 | 8 | 92 | 117 | 188 | 1.12e-14 | 77.0 |
| Msa1316820 | AT4G18010.2 | 46.766 | 201 | 103 | 2 | 184 | 384 | 385 | 581 | 5.86e-60 | 206 |
| Msa1316820 | AT4G18010.2 | 38.053 | 113 | 43 | 3 | 7 | 119 | 108 | 193 | 7.35e-14 | 74.3 |
| Msa1316820 | AT1G34120.4 | 44.586 | 157 | 83 | 2 | 178 | 331 | 320 | 475 | 9.76e-39 | 146 |
| Msa1316820 | AT1G34120.4 | 44.444 | 81 | 32 | 1 | 12 | 92 | 103 | 170 | 4.79e-14 | 74.3 |
| Msa1316820 | AT2G43900.2 | 26.855 | 283 | 163 | 5 | 188 | 431 | 658 | 935 | 1.02e-26 | 114 |
| Msa1316820 | AT2G43900.1 | 26.855 | 283 | 163 | 5 | 188 | 431 | 658 | 935 | 1.05e-26 | 114 |
| Msa1316820 | AT2G31830.2 | 28.352 | 261 | 139 | 6 | 194 | 413 | 667 | 920 | 9.75e-26 | 111 |
| Msa1316820 | AT2G31830.1 | 28.352 | 261 | 139 | 6 | 194 | 413 | 667 | 920 | 1.04e-25 | 111 |
| Msa1316820 | AT2G31830.3 | 28.395 | 243 | 143 | 5 | 188 | 406 | 661 | 896 | 2.04e-25 | 110 |
| Msa1316820 | AT1G05630.3 | 28.194 | 227 | 134 | 5 | 188 | 390 | 652 | 873 | 5.52e-25 | 108 |
| Msa1316820 | AT1G05630.2 | 28.194 | 227 | 134 | 5 | 188 | 390 | 652 | 873 | 6.47e-25 | 108 |
| Msa1316820 | AT1G65580.2 | 27.206 | 272 | 150 | 7 | 191 | 421 | 356 | 620 | 2.09e-23 | 103 |
| Msa1316820 | AT1G65580.1 | 27.206 | 272 | 150 | 7 | 191 | 421 | 622 | 886 | 3.38e-23 | 103 |
| Msa1316820 | AT1G47510.4 | 31.188 | 202 | 111 | 6 | 224 | 417 | 84 | 265 | 3.99e-22 | 96.3 |
| Msa1316820 | AT1G47510.1 | 31.188 | 202 | 111 | 6 | 224 | 417 | 146 | 327 | 1.72e-21 | 95.5 |
| Msa1316820 | AT1G47510.2 | 36.885 | 122 | 64 | 3 | 303 | 417 | 149 | 264 | 5.77e-15 | 75.5 |
| Msa1316820 | AT1G05630.1 | 37.895 | 95 | 55 | 2 | 297 | 390 | 816 | 907 | 8.91e-14 | 74.3 |
Find 111 sgRNAs with CRISPR-Local
Find 209 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACCAATCCTAACATTATTTA+AGG | 0.121031 | 8_4:-17763758 | Msa1316820:intron |
| TTTCAAACTTGTTAGCTTTC+AGG | 0.152678 | 8_4:-17766388 | Msa1316820:intron |
| CTAAATATACATTTGATTCT+TGG | 0.203026 | 8_4:+17766082 | None:intergenic |
| GAAGAAGAGTTAGAAGGTTT+TGG | 0.204429 | 8_4:-17763381 | Msa1316820:three_prime_UTR |
| GGAAGCTGGTCGTGTATTTA+AGG | 0.234424 | 8_4:-17764904 | Msa1316820:CDS |
| TCAGATTTCTCTTCTAATAA+AGG | 0.235961 | 8_4:-17766267 | Msa1316820:CDS |
| ATTGAGTGATTGATTGATTA+AGG | 0.241855 | 8_4:+17766296 | None:intergenic |
| TGAACCGGATATGTATGTTT+TGG | 0.298239 | 8_4:-17766878 | Msa1316820:CDS |
| GCAATACCTTAAATAATGTT+AGG | 0.314253 | 8_4:+17763752 | None:intergenic |
| GAATGCTATAAGTCGTTCTT+TGG | 0.318803 | 8_4:+17763352 | None:intergenic |
| TCTTCTTTAGAGAAGGCTTT+TGG | 0.319326 | 8_4:+17766205 | None:intergenic |
| TACTGATTCTTGCAAATCTT+AGG | 0.332057 | 8_4:+17765588 | None:intergenic |
| CAGATTTCTCTTCTAATAAA+GGG | 0.342105 | 8_4:-17766266 | Msa1316820:CDS |
| TAGAAGTGGAAGTCATGTTT+AGG | 0.349766 | 8_4:-17763862 | Msa1316820:CDS |
| TCTCTATGACATCAAGATTT+CGG | 0.370636 | 8_4:+17765631 | None:intergenic |
| TTGCTTTATCTGCAGTCATC+TGG | 0.374278 | 8_4:-17765685 | Msa1316820:CDS |
| TTGTAACTGCGTACTTGAAA+TGG | 0.377560 | 8_4:-17766139 | Msa1316820:CDS |
| TGAGTCGCGATGATGCTAAA+AGG | 0.380091 | 8_4:-17765362 | Msa1316820:CDS |
| ACAATGAACCTGCTGCAAAA+TGG | 0.394526 | 8_4:-17766323 | Msa1316820:CDS |
| TTAAATAATGTTAGGATTGG+TGG | 0.396076 | 8_4:+17763760 | None:intergenic |
| CCAGCCGAATCATATGGTTC+GGG | 0.398763 | 8_4:-17765407 | Msa1316820:intron |
| TTATCCGATTTCCGTTGCTT+TGG | 0.401076 | 8_4:-17766028 | Msa1316820:CDS |
| TCCAGCCGAATCATATGGTT+CGG | 0.406407 | 8_4:-17765408 | Msa1316820:intron |
| CGACGTGAAGAAGAGTTAGA+AGG | 0.406983 | 8_4:-17763387 | Msa1316820:three_prime_UTR |
| GTAGCCAAAGCAACGGAAAT+CGG | 0.410912 | 8_4:+17766024 | None:intergenic |
| AAAACTTTCAAGAAATTAAA+CGG | 0.411302 | 8_4:-17766177 | Msa1316820:CDS |
| TGGAAATGTGCTTGTATTAG+AGG | 0.413776 | 8_4:-17766346 | Msa1316820:CDS |
| GAATAAAATGAAGTTCTTGT+AGG | 0.413791 | 8_4:+17763788 | None:intergenic |
| AGAAGTGGAAGTCATGTTTA+GGG | 0.426107 | 8_4:-17763861 | Msa1316820:CDS |
| TCTTCAGGTTCGAAATGAAC+CGG | 0.435057 | 8_4:-17766893 | Msa1316820:CDS |
| GCAGGTGTGATAGAATCTTA+TGG | 0.437917 | 8_4:-17763970 | Msa1316820:intron |
| TCTTGTTACTTGTAAGCAAA+TGG | 0.446370 | 8_4:-17765983 | Msa1316820:CDS |
| ATAATAAGTATCTGAGTTGA+AGG | 0.446966 | 8_4:+17764836 | None:intergenic |
| ATGAATTTGAAAGTTGAAAG+AGG | 0.449884 | 8_4:+17763820 | None:intergenic |
| GTATTTAAGGGGTGGAAAGA+GGG | 0.449981 | 8_4:-17764891 | Msa1316820:CDS |
| TCAAGAAATTAAACGGAAAG+AGG | 0.456456 | 8_4:-17766170 | Msa1316820:CDS |
| GAGATTGTCCCTTTGAATGC+TGG | 0.457000 | 8_4:-17766366 | Msa1316820:CDS |
| CTTAAAATGGAAAGGGAAGC+TGG | 0.458719 | 8_4:-17764918 | Msa1316820:CDS |
| TAAAGGTTTCAAAGAACAAA+AGG | 0.459114 | 8_4:-17764803 | Msa1316820:CDS |
| GAAGCTGGTCGTGTATTTAA+GGG | 0.459181 | 8_4:-17764903 | Msa1316820:CDS |
| TTGAAGGCATATTTATAAGT+AGG | 0.465400 | 8_4:+17764852 | None:intergenic |
| ACCTTAAATAATGTTAGGAT+TGG | 0.465960 | 8_4:+17763757 | None:intergenic |
| GATTCATCCATTCAAAATCA+AGG | 0.466618 | 8_4:-17767120 | Msa1316820:five_prime_UTR |
| ATCTGCAGTCATCTGGCGTC+GGG | 0.476701 | 8_4:-17765678 | Msa1316820:CDS |
| AAATCTCCAGCCGAATCATA+TGG | 0.477837 | 8_4:-17765413 | Msa1316820:intron |
| GTTACTTGTAAGCAAATGGT+TGG | 0.481774 | 8_4:-17765979 | Msa1316820:CDS |
| TAACTCTTCTTCACGTCGAA+CGG | 0.482309 | 8_4:+17763392 | None:intergenic |
| TTATTATGCTGAAGGTGTAA+AGG | 0.483756 | 8_4:-17764820 | Msa1316820:CDS |
| TGTATTTAAGGGGTGGAAAG+AGG | 0.486436 | 8_4:-17764892 | Msa1316820:CDS |
| CATTCAGAATTTATGAAGCC+AGG | 0.487062 | 8_4:-17763334 | Msa1316820:three_prime_UTR |
| TTTCACAGCTTAAAATGGAA+AGG | 0.489319 | 8_4:-17764926 | Msa1316820:intron |
| CTAAAACCTACTGCATCATT+CGG | 0.491319 | 8_4:-17766243 | Msa1316820:CDS |
| GAAGAAAATCACTCAGATCA+AGG | 0.492458 | 8_4:+17766911 | None:intergenic |
| TTCACAGCTTAAAATGGAAA+GGG | 0.494396 | 8_4:-17764925 | Msa1316820:intron |
| AGCACATTTCCAGCATTCAA+AGG | 0.494921 | 8_4:+17766357 | None:intergenic |
| TGTTAGTGTATGGATGAAGA+AGG | 0.500361 | 8_4:-17765950 | Msa1316820:CDS |
| AGTCCCCGAACCATATGATT+CGG | 0.504790 | 8_4:+17765403 | None:intergenic |
| AAGGAACTTATTCAATATGT+AGG | 0.506693 | 8_4:-17765931 | Msa1316820:CDS |
| GCACATTTCCAGCATTCAAA+GGG | 0.509994 | 8_4:+17766358 | None:intergenic |
| ACACATACACGCGAGCGTGC+AGG | 0.513735 | 8_4:+17766838 | None:intergenic |
| TTCTTGATCTTCTTTAGAGA+AGG | 0.514645 | 8_4:+17766198 | None:intergenic |
| TGCACTATTTAACAAGGATC+AGG | 0.516259 | 8_4:-17765316 | Msa1316820:intron |
| GGCTTGTGGAAATGAAGGAC+TGG | 0.518612 | 8_4:-17765341 | Msa1316820:CDS |
| TGCACTAGTCGCGGTATCAT+GGG | 0.520392 | 8_4:-17765892 | Msa1316820:CDS |
| ACTCAGATCAAGGTTCCCAC+TGG | 0.521656 | 8_4:+17766921 | None:intergenic |
| TTAATCAATCAATCACTCAA+TGG | 0.523814 | 8_4:-17766294 | Msa1316820:CDS |
| CGCGGTATCATGGGATGCCT+CGG | 0.525766 | 8_4:-17765883 | Msa1316820:CDS |
| CTCAGATCAAGGTTCCCACT+GGG | 0.525929 | 8_4:+17766922 | None:intergenic |
| TCTGGCGTCGGGAGAGAAAG+AGG | 0.527456 | 8_4:-17765667 | Msa1316820:CDS |
| TACCCCAAAACATACATATC+CGG | 0.530687 | 8_4:+17766874 | None:intergenic |
| TATTTAAGGGGTGGAAAGAG+GGG | 0.531042 | 8_4:-17764890 | Msa1316820:CDS |
| TAAAAGGCTTGTGGAAATGA+AGG | 0.533535 | 8_4:-17765346 | Msa1316820:CDS |
| TATCTGCAGTCATCTGGCGT+CGG | 0.535545 | 8_4:-17765679 | Msa1316820:CDS |
| CATGGGATGCCTCGGAAACA+AGG | 0.537222 | 8_4:-17765875 | Msa1316820:intron |
| TGATCCTTGTTAAATAGTGC+AGG | 0.544359 | 8_4:+17765318 | None:intergenic |
| ATAGAATCTTATGGCATGGA+AGG | 0.545893 | 8_4:-17763961 | Msa1316820:CDS |
| CGATGATGCTAAAAGGCTTG+TGG | 0.548401 | 8_4:-17765355 | Msa1316820:CDS |
| AACCTACTGCATCATTCGGC+GGG | 0.548985 | 8_4:-17766239 | Msa1316820:CDS |
| AATGGAAAGGAAGGCTGCTA+AGG | 0.553149 | 8_4:-17766121 | Msa1316820:CDS |
| AGACGATTCTTCGACAGAAG+AGG | 0.559104 | 8_4:-17766061 | Msa1316820:CDS |
| TTTGCTGCAACATGGAATGT+TGG | 0.565716 | 8_4:-17766955 | Msa1316820:CDS |
| TTTGCAAGAATCAGTACAGT+AGG | 0.567030 | 8_4:-17765581 | Msa1316820:CDS |
| CACATACACGCGAGCGTGCA+GGG | 0.569335 | 8_4:+17766839 | None:intergenic |
| TCAGATACTTATTATGCTGA+AGG | 0.572243 | 8_4:-17764828 | Msa1316820:CDS |
| AATAGAAAATGTGATTAGAA+CGG | 0.583247 | 8_4:-17763304 | Msa1316820:three_prime_UTR |
| TGTGATAGAATCTTATGGCA+TGG | 0.584226 | 8_4:-17763965 | Msa1316820:CDS |
| AACTGCTTCACAAGAAGACA+TGG | 0.584964 | 8_4:+17767086 | None:intergenic |
| CGTACTTGAAATGGAAAGGA+AGG | 0.588042 | 8_4:-17766130 | Msa1316820:CDS |
| ACTGCGTACTTGAAATGGAA+AGG | 0.588512 | 8_4:-17766134 | Msa1316820:CDS |
| ACAAAAGGAGAACTCCAGCT+TGG | 0.589655 | 8_4:-17764788 | Msa1316820:intron |
| GCTGCAACATGGAATGTTGG+AGG | 0.592293 | 8_4:-17766952 | Msa1316820:CDS |
| AGAATCTTATGGCATGGAAG+GGG | 0.594654 | 8_4:-17763959 | Msa1316820:CDS |
| AAACCTACTGCATCATTCGG+CGG | 0.597972 | 8_4:-17766240 | Msa1316820:CDS |
| TTATTAGAAGAGAAATCTGA+AGG | 0.601138 | 8_4:+17766270 | None:intergenic |
| TAGAATCTTATGGCATGGAA+GGG | 0.605294 | 8_4:-17763960 | Msa1316820:CDS |
| ATTCACTCTTGCAATCATTG+TGG | 0.609102 | 8_4:+17763431 | None:intergenic |
| CTGGCGTCGGGAGAGAAAGA+GGG | 0.610013 | 8_4:-17765666 | Msa1316820:CDS |
| CTGGCCTGCACTATTTAACA+AGG | 0.610440 | 8_4:-17765322 | Msa1316820:CDS |
| AGAATATGTTGCACTAGTCG+CGG | 0.613127 | 8_4:-17765901 | Msa1316820:CDS |
| AAGCTGGTCGTGTATTTAAG+GGG | 0.622036 | 8_4:-17764902 | Msa1316820:CDS |
| ATGTTGCACAAACAGGTCGA+TGG | 0.630909 | 8_4:+17763891 | None:intergenic |
| CTGGTCGTGTATTTAAGGGG+TGG | 0.637785 | 8_4:-17764899 | Msa1316820:CDS |
| CAGCCGAATCATATGGTTCG+GGG | 0.640264 | 8_4:-17765406 | Msa1316820:CDS |
| TTGGAGGTCAATGCCCCAGT+GGG | 0.641608 | 8_4:-17766936 | Msa1316820:CDS |
| CAAACTGATACATACCAAGC+TGG | 0.644239 | 8_4:+17764774 | None:intergenic |
| CTGATTAGTAGCCAAAGCAA+CGG | 0.648329 | 8_4:+17766017 | None:intergenic |
| GTTGGAGGTCAATGCCCCAG+TGG | 0.685458 | 8_4:-17766937 | Msa1316820:CDS |
| GCTTCACAAGAAGACATGGA+AGG | 0.698268 | 8_4:+17767090 | None:intergenic |
| GACCCGCCGAATGATGCAGT+AGG | 0.699165 | 8_4:+17766237 | None:intergenic |
| GAAGTGGAAGTCATGTTTAG+GGG | 0.699612 | 8_4:-17763860 | Msa1316820:CDS |
| TCAGATCAAGGTTCCCACTG+GGG | 0.725489 | 8_4:+17766923 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATAACTATTATTGTTAATA+TGG | + | chr8_4:17763429-17763448 | None:intergenic | 10.0% |
| !!! | TTCATATTTTAAGATTATAT+CGG | - | chr8_4:17766240-17766259 | Msa1316820:CDS | 10.0% |
| !!! | TTTTATTTTTTATTTTTGAG+AGG | - | chr8_4:17766361-17766380 | Msa1316820:CDS | 10.0% |
| !! | TTAATAAGAGAATATTTAAT+TGG | - | chr8_4:17766941-17766960 | Msa1316820:CDS | 10.0% |
| !!! | GTATTTTAATTTTTTTCTCA+AGG | - | chr8_4:17763657-17763676 | Msa1316820:intron | 15.0% |
| !! | AAAACTTTCAAGAAATTAAA+CGG | - | chr8_4:17764252-17764271 | Msa1316820:intron | 15.0% |
| !!! | AAAATTTATTAGCATTGAAA+TGG | - | chr8_4:17765386-17765405 | Msa1316820:CDS | 15.0% |
| !! | TAATAATTATATTACTCATC+CGG | + | chr8_4:17765793-17765812 | None:intergenic | 15.0% |
| !!! | AGTATTTTTCTTAAACAAAA+TGG | - | chr8_4:17765817-17765836 | Msa1316820:intron | 15.0% |
| !! | TACTAAAAAAATCTTAGTAA+CGG | - | chr8_4:17766213-17766232 | Msa1316820:CDS | 15.0% |
| !! | AAACACAAACTAAATATAAT+CGG | + | chr8_4:17766340-17766359 | None:intergenic | 15.0% |
| !! | ATATAAATCACTATCATATT+TGG | + | chr8_4:17766771-17766790 | None:intergenic | 15.0% |
| !! | CTAAATATACATTTGATTCT+TGG | + | chr8_4:17764350-17764369 | None:intergenic | 20.0% |
| !!! | AGTGTTACCAATTTTTTTTA+TGG | - | chr8_4:17764672-17764691 | Msa1316820:intron | 20.0% |
| !! | TATCAAAATTTCTGATCATA+TGG | - | chr8_4:17764986-17765005 | Msa1316820:intron | 20.0% |
| !! | TAACTGAAAACTTTAAATTG+CGG | + | chr8_4:17765356-17765375 | None:intergenic | 20.0% |
| !!! | TTATTTTTCACAGCTTAAAA+TGG | - | chr8_4:17765498-17765517 | Msa1316820:intron | 20.0% |
| !!! | CTTCAAACTTTTTTTTTTGA+AGG | + | chr8_4:17765691-17765710 | None:intergenic | 20.0% |
| !!! | TGAAGCAATATTTTTAGTAA+CGG | - | chr8_4:17765706-17765725 | Msa1316820:CDS | 20.0% |
| !! | TTAAGACAAGATAATTTCTT+TGG | - | chr8_4:17765959-17765978 | Msa1316820:CDS | 20.0% |
| !!! | AATTTTTCATCTGTACAAAA+TGG | + | chr8_4:17766072-17766091 | None:intergenic | 20.0% |
| !!! | TTTTAAGATTATATCGGATT+TGG | - | chr8_4:17766246-17766265 | Msa1316820:CDS | 20.0% |
| !! | TCTAAATGATAAAAAATTGC+AGG | - | chr8_4:17766441-17766460 | Msa1316820:intron | 20.0% |
| !!! | ATTTCTGAATTTTAAGACAT+TGG | - | chr8_4:17766728-17766747 | Msa1316820:intron | 20.0% |
| !!! | ATGATAGTGATTTATATACT+AGG | - | chr8_4:17766774-17766793 | Msa1316820:intron | 20.0% |
| !! | TCTAAATATGCATTAGAAAA+AGG | + | chr8_4:17766893-17766912 | None:intergenic | 20.0% |
| !! | AATAGAAAATGTGATTAGAA+CGG | - | chr8_4:17767125-17767144 | Msa1316820:five_prime_UTR | 20.0% |
| ! | AGACAATTAATCATTTGATC+AGG | - | chr8_4:17763717-17763736 | Msa1316820:intron | 25.0% |
| ! | GACAATTAATCATTTGATCA+GGG | - | chr8_4:17763718-17763737 | Msa1316820:intron | 25.0% |
| ! | CATAACTGTGTTACAAATTA+CGG | + | chr8_4:17763962-17763981 | None:intergenic | 25.0% |
| ! | ATTGAGTGATTGATTGATTA+AGG | + | chr8_4:17764136-17764155 | None:intergenic | 25.0% |
| ! | TTAATCAATCAATCACTCAA+TGG | - | chr8_4:17764135-17764154 | Msa1316820:intron | 25.0% |
| ! | TTATTAGAAGAGAAATCTGA+AGG | + | chr8_4:17764162-17764181 | None:intergenic | 25.0% |
| ! | TCAGATTTCTCTTCTAATAA+AGG | - | chr8_4:17764162-17764181 | Msa1316820:intron | 25.0% |
| ! | CAGATTTCTCTTCTAATAAA+GGG | - | chr8_4:17764163-17764182 | Msa1316820:intron | 25.0% |
| !! | TTGGAATTTTTGTTAGTGTA+TGG | - | chr8_4:17764469-17764488 | Msa1316820:intron | 25.0% |
| ! | AAGGAACTTATTCAATATGT+AGG | - | chr8_4:17764498-17764517 | Msa1316820:intron | 25.0% |
| !! | CATAATTTTTCACGATATCA+AGG | - | chr8_4:17765305-17765324 | Msa1316820:intron | 25.0% |
| ! | TAATCAGAAAAGTAATAGAG+AGG | + | chr8_4:17765460-17765479 | None:intergenic | 25.0% |
| !! | TTGAAGGCATATTTATAAGT+AGG | + | chr8_4:17765580-17765599 | None:intergenic | 25.0% |
| !! | ATAATAAGTATCTGAGTTGA+AGG | + | chr8_4:17765596-17765615 | None:intergenic | 25.0% |
| ! | TAAAGGTTTCAAAGAACAAA+AGG | - | chr8_4:17765626-17765645 | Msa1316820:CDS | 25.0% |
| ! | ATTTGTACAGAAAACTTTCA+GGG | + | chr8_4:17766025-17766044 | None:intergenic | 25.0% |
| ! | AATTTGTACAGAAAACTTTC+AGG | + | chr8_4:17766026-17766045 | None:intergenic | 25.0% |
| ! | AAACTAAATATAATCGGATC+CGG | + | chr8_4:17766334-17766353 | None:intergenic | 25.0% |
| ! | ATGAATTTGAAAGTTGAAAG+AGG | + | chr8_4:17766612-17766631 | None:intergenic | 25.0% |
| ! | GAATAAAATGAAGTTCTTGT+AGG | + | chr8_4:17766644-17766663 | None:intergenic | 25.0% |
| ! | TTAAATAATGTTAGGATTGG+TGG | + | chr8_4:17766672-17766691 | None:intergenic | 25.0% |
| ! | ACCAATCCTAACATTATTTA+AGG | - | chr8_4:17766671-17766690 | Msa1316820:intron | 25.0% |
| ! | ACCTTAAATAATGTTAGGAT+TGG | + | chr8_4:17766675-17766694 | None:intergenic | 25.0% |
| ! | GCAATACCTTAAATAATGTT+AGG | + | chr8_4:17766680-17766699 | None:intergenic | 25.0% |
| !! | CATTTTCTATTACAATTTCC+TGG | + | chr8_4:17767116-17767135 | None:intergenic | 25.0% |
| GATTCATCCATTCAAAATCA+AGG | - | chr8_4:17763309-17763328 | Msa1316820:three_prime_UTR | 30.0% | |
| TAACAAGACTGATCTATCTT+CGG | + | chr8_4:17763763-17763782 | None:intergenic | 30.0% | |
| ! | AGCACAAGATATGATTTGTA+AGG | - | chr8_4:17763806-17763825 | Msa1316820:CDS | 30.0% |
| !! | TTTCAAACTTGTTAGCTTTC+AGG | - | chr8_4:17764041-17764060 | Msa1316820:intron | 30.0% |
| ! | TTCTTGATCTTCTTTAGAGA+AGG | + | chr8_4:17764234-17764253 | None:intergenic | 30.0% |
| TCAAGAAATTAAACGGAAAG+AGG | - | chr8_4:17764259-17764278 | Msa1316820:intron | 30.0% | |
| ! | TCTTGTTACTTGTAAGCAAA+TGG | - | chr8_4:17764446-17764465 | Msa1316820:intron | 30.0% |
| TGCAGCACCATAAAAAAAAT+TGG | + | chr8_4:17764682-17764701 | None:intergenic | 30.0% | |
| !!! | AATTTTTTTTATGGTGCTGC+AGG | - | chr8_4:17764681-17764700 | Msa1316820:intron | 30.0% |
| !!! | ATTTTTTTTATGGTGCTGCA+GGG | - | chr8_4:17764682-17764701 | Msa1316820:intron | 30.0% |
| TCTCTATGACATCAAGATTT+CGG | + | chr8_4:17764801-17764820 | None:intergenic | 30.0% | |
| !! | TACTGATTCTTGCAAATCTT+AGG | + | chr8_4:17764844-17764863 | None:intergenic | 30.0% |
| !! | TCGTGATCTAAAATTTTGTC+AGG | + | chr8_4:17764877-17764896 | None:intergenic | 30.0% |
| TACAACATACCAACATTCTT+TGG | + | chr8_4:17765156-17765175 | None:intergenic | 30.0% | |
| AGATTCTTGAAATCACAACA+TGG | + | chr8_4:17765191-17765210 | None:intergenic | 30.0% | |
| TTTCACAGCTTAAAATGGAA+AGG | - | chr8_4:17765503-17765522 | Msa1316820:intron | 30.0% | |
| TTCACAGCTTAAAATGGAAA+GGG | - | chr8_4:17765504-17765523 | Msa1316820:intron | 30.0% | |
| TCAGATACTTATTATGCTGA+AGG | - | chr8_4:17765601-17765620 | Msa1316820:CDS | 30.0% | |
| ! | TTATTATGCTGAAGGTGTAA+AGG | - | chr8_4:17765609-17765628 | Msa1316820:CDS | 30.0% |
| !!! | CAATATTTTTAGTAACGGTC+CGG | - | chr8_4:17765711-17765730 | Msa1316820:CDS | 30.0% |
| ! | TAGTTCAATTGGTTCAAACA+CGG | - | chr8_4:17765762-17765781 | Msa1316820:intron | 30.0% |
| TGTTCATTCATTATCCTTGA+TGG | - | chr8_4:17766045-17766064 | Msa1316820:CDS | 30.0% | |
| CATGAACTAAGTACACAATT+TGG | + | chr8_4:17766127-17766146 | None:intergenic | 30.0% | |
| TTGTGTACTTAGTTCATGTT+TGG | - | chr8_4:17766129-17766148 | Msa1316820:CDS | 30.0% | |
| ! | AAGAAGAGTTAGAAGGTTTT+GGG | - | chr8_4:17767049-17767068 | Msa1316820:intron | 30.0% |
| ! | TACTGAGCCTTGATTTTGAA+TGG | + | chr8_4:17763319-17763338 | None:intergenic | 35.0% |
| !! | ATAGTGTTTTTGCTGCAACA+TGG | - | chr8_4:17763466-17763485 | Msa1316820:intron | 35.0% |
| GAAGAAAATCACTCAGATCA+AGG | + | chr8_4:17763521-17763540 | None:intergenic | 35.0% | |
| ! | TGATCTGAGTGATTTTCTTC+AGG | - | chr8_4:17763521-17763540 | Msa1316820:intron | 35.0% |
| ! | TGAACCGGATATGTATGTTT+TGG | - | chr8_4:17763551-17763570 | Msa1316820:intron | 35.0% |
| ! | GAACCGGATATGTATGTTTT+GGG | - | chr8_4:17763552-17763571 | Msa1316820:intron | 35.0% |
| ! | AACCGGATATGTATGTTTTG+GGG | - | chr8_4:17763553-17763572 | Msa1316820:intron | 35.0% |
| TACCCCAAAACATACATATC+CGG | + | chr8_4:17763558-17763577 | None:intergenic | 35.0% | |
| GCGATAGTACTATAGCATAA+TGG | - | chr8_4:17763860-17763879 | Msa1316820:CDS | 35.0% | |
| GCTCTAATGCATTCTTAGTA+TGG | - | chr8_4:17764010-17764029 | Msa1316820:intron | 35.0% | |
| TGGAAATGTGCTTGTATTAG+AGG | - | chr8_4:17764083-17764102 | Msa1316820:intron | 35.0% | |
| CTAAAACCTACTGCATCATT+CGG | - | chr8_4:17764186-17764205 | Msa1316820:intron | 35.0% | |
| !! | TCTTCTTTAGAGAAGGCTTT+TGG | + | chr8_4:17764227-17764246 | None:intergenic | 35.0% |
| TTGTAACTGCGTACTTGAAA+TGG | - | chr8_4:17764290-17764309 | Msa1316820:intron | 35.0% | |
| GTTACTTGTAAGCAAATGGT+TGG | - | chr8_4:17764450-17764469 | Msa1316820:intron | 35.0% | |
| TGTTAGTGTATGGATGAAGA+AGG | - | chr8_4:17764479-17764498 | Msa1316820:intron | 35.0% | |
| !! | TTTTAACTACCTTGTTTCCG+AGG | + | chr8_4:17764566-17764585 | None:intergenic | 35.0% |
| !!! | TTTTTTTTATGGTGCTGCAG+GGG | - | chr8_4:17764683-17764702 | Msa1316820:intron | 35.0% |
| TTTGCAAGAATCAGTACAGT+AGG | - | chr8_4:17764848-17764867 | Msa1316820:CDS | 35.0% | |
| TAAAAGGCTTGTGGAAATGA+AGG | - | chr8_4:17765083-17765102 | Msa1316820:intron | 35.0% | |
| TGATCCTTGTTAAATAGTGC+AGG | + | chr8_4:17765114-17765133 | None:intergenic | 35.0% | |
| TGCACTATTTAACAAGGATC+AGG | - | chr8_4:17765113-17765132 | Msa1316820:intron | 35.0% | |
| ATACCAACATTCTTTGGCAA+GGG | + | chr8_4:17765150-17765169 | None:intergenic | 35.0% | |
| TTCCTAAGTATCTTAGACTC+AGG | - | chr8_4:17765218-17765237 | Msa1316820:intron | 35.0% | |
| TCCTAAGTATCTTAGACTCA+GGG | - | chr8_4:17765219-17765238 | Msa1316820:intron | 35.0% | |
| AGAACGTAATCAAATCGACT+TGG | + | chr8_4:17765863-17765882 | None:intergenic | 35.0% | |
| !!! | TCGAACTGCGTTTTAAGAAT+TGG | + | chr8_4:17765934-17765953 | None:intergenic | 35.0% |
| GATTTATGTCCGATCAAGAT+CGG | + | chr8_4:17766292-17766311 | None:intergenic | 35.0% | |
| TGTGATAGAATCTTATGGCA+TGG | - | chr8_4:17766464-17766483 | Msa1316820:intron | 35.0% | |
| ATAGAATCTTATGGCATGGA+AGG | - | chr8_4:17766468-17766487 | Msa1316820:intron | 35.0% | |
| TAGAATCTTATGGCATGGAA+GGG | - | chr8_4:17766469-17766488 | Msa1316820:intron | 35.0% | |
| ! | ACCTGTTTGTGCAACATTTT+TGG | - | chr8_4:17766544-17766563 | Msa1316820:intron | 35.0% |
| ACCAAAAATGTTGCACAAAC+AGG | + | chr8_4:17766548-17766567 | None:intergenic | 35.0% | |
| !!! | TGCAACATTTTTGGTAGAAG+TGG | - | chr8_4:17766553-17766572 | Msa1316820:intron | 35.0% |
| TAGAAGTGGAAGTCATGTTT+AGG | - | chr8_4:17766567-17766586 | Msa1316820:intron | 35.0% | |
| AGAAGTGGAAGTCATGTTTA+GGG | - | chr8_4:17766568-17766587 | Msa1316820:intron | 35.0% | |
| CACATAATTTCTGTAGCTTG+TGG | - | chr8_4:17766867-17766886 | Msa1316820:CDS | 35.0% | |
| ATTCACTCTTGCAATCATTG+TGG | + | chr8_4:17767001-17767020 | None:intergenic | 35.0% | |
| ! | GAAGAAGAGTTAGAAGGTTT+TGG | - | chr8_4:17767048-17767067 | Msa1316820:intron | 35.0% |
| GAATGCTATAAGTCGTTCTT+TGG | + | chr8_4:17767080-17767099 | None:intergenic | 35.0% | |
| CATTCAGAATTTATGAAGCC+AGG | - | chr8_4:17767095-17767114 | Msa1316820:exon | 35.0% | |
| AACTGCTTCACAAGAAGACA+TGG | + | chr8_4:17763346-17763365 | None:intergenic | 40.0% | |
| TTTGCTGCAACATGGAATGT+TGG | - | chr8_4:17763474-17763493 | Msa1316820:intron | 40.0% | |
| ! | TCTTCAGGTTCGAAATGAAC+CGG | - | chr8_4:17763536-17763555 | Msa1316820:intron | 40.0% |
| CAAGGATGTCAATCGACTAT+TGG | - | chr8_4:17763675-17763694 | Msa1316820:intron | 40.0% | |
| TGATCAGGGATCCTTAGTTT+CGG | - | chr8_4:17763732-17763751 | Msa1316820:intron | 40.0% | |
| GCACATTTCCAGCATTCAAA+GGG | + | chr8_4:17764074-17764093 | None:intergenic | 40.0% | |
| AGCACATTTCCAGCATTCAA+AGG | + | chr8_4:17764075-17764094 | None:intergenic | 40.0% | |
| ACAATGAACCTGCTGCAAAA+TGG | - | chr8_4:17764106-17764125 | Msa1316820:intron | 40.0% | |
| ACTGCGTACTTGAAATGGAA+AGG | - | chr8_4:17764295-17764314 | Msa1316820:intron | 40.0% | |
| CGTACTTGAAATGGAAAGGA+AGG | - | chr8_4:17764299-17764318 | Msa1316820:intron | 40.0% | |
| TTATCCGATTTCCGTTGCTT+TGG | - | chr8_4:17764401-17764420 | Msa1316820:intron | 40.0% | |
| CTGATTAGTAGCCAAAGCAA+CGG | + | chr8_4:17764415-17764434 | None:intergenic | 40.0% | |
| AGAATATGTTGCACTAGTCG+CGG | - | chr8_4:17764528-17764547 | Msa1316820:intron | 40.0% | |
| TTGCTTTATCTGCAGTCATC+TGG | - | chr8_4:17764744-17764763 | Msa1316820:intron | 40.0% | |
| AAATCTCCAGCCGAATCATA+TGG | - | chr8_4:17765016-17765035 | Msa1316820:intron | 40.0% | |
| CATACCAACATTCTTTGGCA+AGG | + | chr8_4:17765151-17765170 | None:intergenic | 40.0% | |
| ! | ACCCTGAGTCTAAGATACTT+AGG | + | chr8_4:17765223-17765242 | None:intergenic | 40.0% |
| CTTAAAATGGAAAGGGAAGC+TGG | - | chr8_4:17765511-17765530 | Msa1316820:intron | 40.0% | |
| GAAGCTGGTCGTGTATTTAA+GGG | - | chr8_4:17765526-17765545 | Msa1316820:intron | 40.0% | |
| AAGCTGGTCGTGTATTTAAG+GGG | - | chr8_4:17765527-17765546 | Msa1316820:intron | 40.0% | |
| TGTATTTAAGGGGTGGAAAG+AGG | - | chr8_4:17765537-17765556 | Msa1316820:intron | 40.0% | |
| GTATTTAAGGGGTGGAAAGA+GGG | - | chr8_4:17765538-17765557 | Msa1316820:intron | 40.0% | |
| TATTTAAGGGGTGGAAAGAG+GGG | - | chr8_4:17765539-17765558 | Msa1316820:intron | 40.0% | |
| CAAACTGATACATACCAAGC+TGG | + | chr8_4:17765658-17765677 | None:intergenic | 40.0% | |
| ATTGAACCAATGAGACCTTC+TGG | - | chr8_4:17765736-17765755 | Msa1316820:intron | 40.0% | |
| CCAATTGAACTATGACCAGA+AGG | + | chr8_4:17765754-17765773 | None:intergenic | 40.0% | |
| CCTTCTGGTCATAGTTCAAT+TGG | - | chr8_4:17765751-17765770 | Msa1316820:intron | 40.0% | |
| TGGTTCAAACACGGTTTAAC+CGG | - | chr8_4:17765771-17765790 | Msa1316820:intron | 40.0% | |
| !!! | CTGCGTTTTAAGAATTGGAC+TGG | + | chr8_4:17765929-17765948 | None:intergenic | 40.0% |
| CTGTACAAAATGGTCCATCA+AGG | + | chr8_4:17766062-17766081 | None:intergenic | 40.0% | |
| GCAGGTGTGATAGAATCTTA+TGG | - | chr8_4:17766459-17766478 | Msa1316820:intron | 40.0% | |
| AGAATCTTATGGCATGGAAG+GGG | - | chr8_4:17766470-17766489 | Msa1316820:intron | 40.0% | |
| GAAGTGGAAGTCATGTTTAG+GGG | - | chr8_4:17766569-17766588 | Msa1316820:intron | 40.0% | |
| TGGTCTTTGAACTTGTGAAC+AGG | - | chr8_4:17766961-17766980 | Msa1316820:CDS | 40.0% | |
| TAACTCTTCTTCACGTCGAA+CGG | + | chr8_4:17767040-17767059 | None:intergenic | 40.0% | |
| GCTTCACAAGAAGACATGGA+AGG | + | chr8_4:17763342-17763361 | None:intergenic | 45.0% | |
| CTTCGGATCAACCGAAACTA+AGG | + | chr8_4:17763746-17763765 | None:intergenic | 45.0% | |
| CGCTTCGCAACAGTGTATAA+CGG | + | chr8_4:17763909-17763928 | None:intergenic | 45.0% | |
| GAGATTGTCCCTTTGAATGC+TGG | - | chr8_4:17764063-17764082 | Msa1316820:intron | 45.0% | |
| AAACCTACTGCATCATTCGG+CGG | - | chr8_4:17764189-17764208 | Msa1316820:intron | 45.0% | |
| AATGGAAAGGAAGGCTGCTA+AGG | - | chr8_4:17764308-17764327 | Msa1316820:intron | 45.0% | |
| AGACGATTCTTCGACAGAAG+AGG | - | chr8_4:17764368-17764387 | Msa1316820:intron | 45.0% | |
| GTAGCCAAAGCAACGGAAAT+CGG | + | chr8_4:17764408-17764427 | None:intergenic | 45.0% | |
| TCCAGCCGAATCATATGGTT+CGG | - | chr8_4:17765021-17765040 | Msa1316820:intron | 45.0% | |
| AGTCCCCGAACCATATGATT+CGG | + | chr8_4:17765029-17765048 | None:intergenic | 45.0% | |
| TGAGTCGCGATGATGCTAAA+AGG | - | chr8_4:17765067-17765086 | Msa1316820:intron | 45.0% | |
| CGATGATGCTAAAAGGCTTG+TGG | - | chr8_4:17765074-17765093 | Msa1316820:intron | 45.0% | |
| CTGGCCTGCACTATTTAACA+AGG | - | chr8_4:17765107-17765126 | Msa1316820:intron | 45.0% | |
| TCTCCCTTGCCAAAGAATGT+TGG | - | chr8_4:17765144-17765163 | Msa1316820:intron | 45.0% | |
| AGCTGATGCAACAACAACTG+CGG | + | chr8_4:17765276-17765295 | None:intergenic | 45.0% | |
| GGAAGCTGGTCGTGTATTTA+AGG | - | chr8_4:17765525-17765544 | Msa1316820:intron | 45.0% | |
| ACAAAAGGAGAACTCCAGCT+TGG | - | chr8_4:17765641-17765660 | Msa1316820:CDS | 45.0% | |
| !! | GGTCTCATTGGTTCAATCTC+CGG | + | chr8_4:17765733-17765752 | None:intergenic | 45.0% |
| CTATGACCAGAAGGTCTCAT+TGG | + | chr8_4:17765745-17765764 | None:intergenic | 45.0% | |
| !! | TCAAATCGACTTGGCTCAAC+TGG | + | chr8_4:17765854-17765873 | None:intergenic | 45.0% |
| TATGTCCGATCAAGATCGGA+CGG | + | chr8_4:17766288-17766307 | None:intergenic | 45.0% | |
| ATGTTGCACAAACAGGTCGA+TGG | + | chr8_4:17766541-17766560 | None:intergenic | 45.0% | |
| CGACGTGAAGAAGAGTTAGA+AGG | - | chr8_4:17767042-17767061 | Msa1316820:intron | 45.0% | |
| GCTGCAACATGGAATGTTGG+AGG | - | chr8_4:17763477-17763496 | Msa1316820:intron | 50.0% | |
| TCAGATCAAGGTTCCCACTG+GGG | + | chr8_4:17763509-17763528 | None:intergenic | 50.0% | |
| CTCAGATCAAGGTTCCCACT+GGG | + | chr8_4:17763510-17763529 | None:intergenic | 50.0% | |
| ACTCAGATCAAGGTTCCCAC+TGG | + | chr8_4:17763511-17763530 | None:intergenic | 50.0% | |
| !! | AAGGCAAGCCATTTTGCAGC+AGG | + | chr8_4:17764117-17764136 | None:intergenic | 50.0% |
| AACCTACTGCATCATTCGGC+GGG | - | chr8_4:17764190-17764209 | Msa1316820:intron | 50.0% | |
| TTGCACTAGTCGCGGTATCA+TGG | - | chr8_4:17764536-17764555 | Msa1316820:intron | 50.0% | |
| TGCACTAGTCGCGGTATCAT+GGG | - | chr8_4:17764537-17764556 | Msa1316820:intron | 50.0% | |
| TATCTGCAGTCATCTGGCGT+CGG | - | chr8_4:17764750-17764769 | Msa1316820:intron | 50.0% | |
| CCAGCCGAATCATATGGTTC+GGG | - | chr8_4:17765022-17765041 | Msa1316820:intron | 50.0% | |
| CAGCCGAATCATATGGTTCG+GGG | - | chr8_4:17765023-17765042 | Msa1316820:intron | 50.0% | |
| GGCTTGTGGAAATGAAGGAC+TGG | - | chr8_4:17765088-17765107 | Msa1316820:intron | 50.0% | |
| AACTGTCTACAACCGCAGTG+TGG | - | chr8_4:17765250-17765269 | Msa1316820:intron | 50.0% | |
| CTGGTCGTGTATTTAAGGGG+TGG | - | chr8_4:17765530-17765549 | Msa1316820:intron | 50.0% | |
| GACCTGATCGCAAACTAGTC+AGG | - | chr8_4:17765893-17765912 | Msa1316820:CDS | 50.0% | |
| !! | AGCCTGACTAGTTTGCGATC+AGG | + | chr8_4:17765898-17765917 | None:intergenic | 50.0% |
| TGATCGCAAACTAGTCAGGC+TGG | - | chr8_4:17765897-17765916 | Msa1316820:CDS | 50.0% | |
| ! | GCAAACTAGTCAGGCTGGTT+TGG | - | chr8_4:17765902-17765921 | Msa1316820:CDS | 50.0% |
| TCTGTCCGTCCGATCTTGAT+CGG | - | chr8_4:17766280-17766299 | Msa1316820:CDS | 50.0% | |
| TCTCCTGACTGCATGCAATC+CGG | - | chr8_4:17766312-17766331 | Msa1316820:CDS | 50.0% | |
| TTGGAGGTCAATGCCCCAGT+GGG | - | chr8_4:17763493-17763512 | Msa1316820:intron | 55.0% | |
| CATGGGATGCCTCGGAAACA+AGG | - | chr8_4:17764554-17764573 | Msa1316820:intron | 55.0% | |
| ATCTGCAGTCATCTGGCGTC+GGG | - | chr8_4:17764751-17764770 | Msa1316820:intron | 55.0% | |
| ! | CCCGAACCATATGATTCGGC+TGG | + | chr8_4:17765025-17765044 | None:intergenic | 55.0% |
| GATCCGGATTGCATGCAGTC+AGG | + | chr8_4:17766318-17766337 | None:intergenic | 55.0% | |
| GTTGGAGGTCAATGCCCCAG+TGG | - | chr8_4:17763492-17763511 | Msa1316820:intron | 60.0% | |
| CACATACACGCGAGCGTGCA+GGG | + | chr8_4:17763593-17763612 | None:intergenic | 60.0% | |
| ACACATACACGCGAGCGTGC+AGG | + | chr8_4:17763594-17763613 | None:intergenic | 60.0% | |
| GACCCGCCGAATGATGCAGT+AGG | + | chr8_4:17764195-17764214 | None:intergenic | 60.0% | |
| CGCGGTATCATGGGATGCCT+CGG | - | chr8_4:17764546-17764565 | Msa1316820:intron | 60.0% | |
| ! | TCTGGCGTCGGGAGAGAAAG+AGG | - | chr8_4:17764762-17764781 | Msa1316820:intron | 60.0% |
| ! | CTGGCGTCGGGAGAGAAAGA+GGG | - | chr8_4:17764763-17764782 | Msa1316820:intron | 60.0% |
| CAACAACTGCGGCCACACTG+CGG | + | chr8_4:17765265-17765284 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_4 | gene | 17763291 | 17767160 | 17763291 | ID=Msa1316820;Name=Msa1316820 |
| chr8_4 | mRNA | 17763291 | 17767160 | 17763291 | ID=Msa1316820-mRNA-1;Parent=Msa1316820;Name=Msa1316820-mRNA-1;_AED=0.09;_eAED=0.09;_QI=54|0.85|0.87|1|0.57|0.62|8|203|451 |
| chr8_4 | exon | 17763291 | 17763468 | 17763291 | ID=Msa1316820-mRNA-1:exon:6467;Parent=Msa1316820-mRNA-1 |
| chr8_4 | exon | 17763759 | 17763988 | 17763759 | ID=Msa1316820-mRNA-1:exon:6466;Parent=Msa1316820-mRNA-1 |
| chr8_4 | exon | 17764789 | 17764940 | 17764789 | ID=Msa1316820-mRNA-1:exon:6465;Parent=Msa1316820-mRNA-1 |
| chr8_4 | exon | 17765317 | 17765425 | 17765317 | ID=Msa1316820-mRNA-1:exon:6464;Parent=Msa1316820-mRNA-1 |
| chr8_4 | exon | 17765555 | 17765748 | 17765555 | ID=Msa1316820-mRNA-1:exon:6463;Parent=Msa1316820-mRNA-1 |
| chr8_4 | exon | 17765876 | 17766395 | 17765876 | ID=Msa1316820-mRNA-1:exon:6462;Parent=Msa1316820-mRNA-1 |
| chr8_4 | exon | 17766838 | 17766981 | 17766838 | ID=Msa1316820-mRNA-1:exon:6461;Parent=Msa1316820-mRNA-1 |
| chr8_4 | exon | 17767075 | 17767160 | 17767075 | ID=Msa1316820-mRNA-1:exon:6460;Parent=Msa1316820-mRNA-1 |
| chr8_4 | five_prime_UTR | 17767107 | 17767160 | 17767107 | ID=Msa1316820-mRNA-1:five_prime_utr;Parent=Msa1316820-mRNA-1 |
| chr8_4 | CDS | 17767075 | 17767106 | 17767075 | ID=Msa1316820-mRNA-1:cds;Parent=Msa1316820-mRNA-1 |
| chr8_4 | CDS | 17766838 | 17766981 | 17766838 | ID=Msa1316820-mRNA-1:cds;Parent=Msa1316820-mRNA-1 |
| chr8_4 | CDS | 17765876 | 17766395 | 17765876 | ID=Msa1316820-mRNA-1:cds;Parent=Msa1316820-mRNA-1 |
| chr8_4 | CDS | 17765555 | 17765748 | 17765555 | ID=Msa1316820-mRNA-1:cds;Parent=Msa1316820-mRNA-1 |
| chr8_4 | CDS | 17765317 | 17765425 | 17765317 | ID=Msa1316820-mRNA-1:cds;Parent=Msa1316820-mRNA-1 |
| chr8_4 | CDS | 17764789 | 17764940 | 17764789 | ID=Msa1316820-mRNA-1:cds;Parent=Msa1316820-mRNA-1 |
| chr8_4 | CDS | 17763784 | 17763988 | 17763784 | ID=Msa1316820-mRNA-1:cds;Parent=Msa1316820-mRNA-1 |
| chr8_4 | three_prime_UTR | 17763759 | 17763783 | 17763759 | ID=Msa1316820-mRNA-1:three_prime_utr;Parent=Msa1316820-mRNA-1 |
| chr8_4 | three_prime_UTR | 17763291 | 17763468 | 17763291 | ID=Msa1316820-mRNA-1:three_prime_utr;Parent=Msa1316820-mRNA-1 |
| Gene Sequence |
| Protein sequence |
