Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0530850 | XP_013454690.1 | 96.923 | 195 | 6 | 0 | 1 | 195 | 1 | 195 | 8.55e-137 | 390 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0530850 | sp|Q93Z51|NIC4_ARATH | 73.469 | 196 | 51 | 1 | 1 | 195 | 1 | 196 | 8.36e-103 | 297 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0530850 | B7FKR8 | 96.923 | 195 | 6 | 0 | 1 | 195 | 1 | 195 | 4.09e-137 | 390 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0050730 | Msa0530850 | 0.811101 | 8.285384e-51 | -8.615850e-47 |
| Msa0069260 | Msa0530850 | 0.837800 | 4.197331e-57 | -8.615850e-47 |
| Msa0069280 | Msa0530850 | 0.827256 | 1.729322e-54 | -8.615850e-47 |
| Msa0069310 | Msa0530850 | 0.839132 | 1.901810e-57 | -8.615850e-47 |
| Msa0085360 | Msa0530850 | -0.802649 | 5.076288e-49 | -8.615850e-47 |
| Msa0094100 | Msa0530850 | 0.803552 | 3.300694e-49 | -8.615850e-47 |
| Msa0148120 | Msa0530850 | 0.827306 | 1.682258e-54 | -8.615850e-47 |
| Msa0156650 | Msa0530850 | -0.822111 | 2.821615e-53 | -8.615850e-47 |
| Msa0168640 | Msa0530850 | -0.800041 | 1.735773e-48 | -8.615850e-47 |
| Msa0172350 | Msa0530850 | 0.813105 | 3.028615e-51 | -8.615850e-47 |
| Msa0199710 | Msa0530850 | 0.801686 | 8.010558e-49 | -8.615850e-47 |
| Msa0208630 | Msa0530850 | 0.820000 | 8.644075e-53 | -8.615850e-47 |
| Msa0212750 | Msa0530850 | -0.803168 | 3.965689e-49 | -8.615850e-47 |
| Msa0223290 | Msa0530850 | 0.825145 | 5.497884e-54 | -8.615850e-47 |
| Msa0223380 | Msa0530850 | 0.822341 | 2.494683e-53 | -8.615850e-47 |
| Msa0377530 | Msa0530850 | 0.843247 | 1.575859e-58 | -8.615850e-47 |
| Msa0380040 | Msa0530850 | 0.827408 | 1.590921e-54 | -8.615850e-47 |
| Msa0412440 | Msa0530850 | 0.800954 | 1.130973e-48 | -8.615850e-47 |
| Msa0414950 | Msa0530850 | -0.851213 | 1.027398e-60 | -8.615850e-47 |
| Msa0421780 | Msa0530850 | -0.806091 | 9.732243e-50 | -8.615850e-47 |
| Msa0426810 | Msa0530850 | 0.813503 | 2.476384e-51 | -8.615850e-47 |
| Msa0429290 | Msa0530850 | 0.845752 | 3.337547e-59 | -8.615850e-47 |
| Msa0436280 | Msa0530850 | -0.811838 | 5.730355e-51 | -8.615850e-47 |
| Msa0459770 | Msa0530850 | -0.803309 | 3.707781e-49 | -8.615850e-47 |
| Msa0467960 | Msa0530850 | -0.825173 | 5.415589e-54 | -8.615850e-47 |
| Msa0473240 | Msa0530850 | 0.855615 | 5.600682e-62 | -8.615850e-47 |
| Msa0475580 | Msa0530850 | 0.846710 | 1.830962e-59 | -8.615850e-47 |
| Msa0480320 | Msa0530850 | 0.824271 | 8.834629e-54 | -8.615850e-47 |
| Msa0265820 | Msa0530850 | 0.809508 | 1.827556e-50 | -8.615850e-47 |
| Msa0267760 | Msa0530850 | 0.806382 | 8.451292e-50 | -8.615850e-47 |
| Msa0292180 | Msa0530850 | 0.824592 | 7.423504e-54 | -8.615850e-47 |
| Msa0296760 | Msa0530850 | 0.814323 | 1.633108e-51 | -8.615850e-47 |
| Msa0302650 | Msa0530850 | 0.815330 | 9.772407e-52 | -8.615850e-47 |
| Msa0307110 | Msa0530850 | 0.819382 | 1.195762e-52 | -8.615850e-47 |
| Msa0326670 | Msa0530850 | 0.813573 | 2.391002e-51 | -8.615850e-47 |
| Msa0328210 | Msa0530850 | 0.827032 | 1.956526e-54 | -8.615850e-47 |
| Msa0335040 | Msa0530850 | 0.811602 | 6.449850e-51 | -8.615850e-47 |
| Msa0344830 | Msa0530850 | 0.809466 | 1.866232e-50 | -8.615850e-47 |
| Msa0490300 | Msa0530850 | 0.822387 | 2.434735e-53 | -8.615850e-47 |
| Msa0500720 | Msa0530850 | 0.803446 | 3.472713e-49 | -8.615850e-47 |
| Msa0517490 | Msa0530850 | 0.852321 | 4.983862e-61 | -8.615850e-47 |
| Msa0517840 | Msa0530850 | 0.825773 | 3.905223e-54 | -8.615850e-47 |
| Msa0519220 | Msa0530850 | 0.842477 | 2.524747e-58 | -8.615850e-47 |
| Msa0526710 | Msa0530850 | 0.807180 | 5.733747e-50 | -8.615850e-47 |
| Msa0530850 | Msa0535030 | 0.821968 | 3.044943e-53 | -8.615850e-47 |
| Msa0530850 | Msa0535060 | 0.824991 | 5.980093e-54 | -8.615850e-47 |
| Msa0530850 | Msa0553220 | -0.809516 | 1.820255e-50 | -8.615850e-47 |
| Msa0530850 | Msa0562440 | 0.810106 | 1.359419e-50 | -8.615850e-47 |
| Msa0530850 | Msa0587690 | 0.863176 | 3.000221e-64 | -8.615850e-47 |
| Msa0530850 | Msa0591060 | 0.800831 | 1.198244e-48 | -8.615850e-47 |
| Msa0530850 | Msa0591770 | 0.822960 | 1.791309e-53 | -8.615850e-47 |
| Msa0530850 | Msa0627910 | 0.856070 | 4.124406e-62 | -8.615850e-47 |
| Msa0530850 | Msa0654010 | 0.805765 | 1.139893e-49 | -8.615850e-47 |
| Msa0530850 | Msa0669850 | 0.827226 | 1.759019e-54 | -8.615850e-47 |
| Msa0530850 | Msa0670270 | 0.804767 | 1.844528e-49 | -8.615850e-47 |
| Msa0530850 | Msa0860900 | -0.800073 | 1.710376e-48 | -8.615850e-47 |
| Msa0530850 | Msa0874500 | 0.803739 | 3.018937e-49 | -8.615850e-47 |
| Msa0530850 | Msa0874570 | 0.821626 | 3.653724e-53 | -8.615850e-47 |
| Msa0530850 | Msa0896220 | 0.826209 | 3.076266e-54 | -8.615850e-47 |
| Msa0530850 | Msa0908170 | 0.811179 | 7.969643e-51 | -8.615850e-47 |
| Msa0530850 | Msa0922540 | 0.820598 | 6.303562e-53 | -8.615850e-47 |
| Msa0530850 | Msa0976250 | 0.802067 | 6.689252e-49 | -8.615850e-47 |
| Msa0530850 | Msa0992490 | -0.809350 | 1.976143e-50 | -8.615850e-47 |
| Msa0530850 | Msa0996080 | 0.844183 | 8.853208e-59 | -8.615850e-47 |
| Msa0530850 | Msa1004900 | -0.840413 | 8.829566e-58 | -8.615850e-47 |
| Msa0530850 | Msa1015060 | 0.813318 | 2.719655e-51 | -8.615850e-47 |
| Msa0530850 | Msa1026760 | 0.805542 | 1.269438e-49 | -8.615850e-47 |
| Msa0530850 | Msa1026790 | 0.804654 | 1.947290e-49 | -8.615850e-47 |
| Msa0530850 | Msa1047720 | 0.810718 | 1.002818e-50 | -8.615850e-47 |
| Msa0530850 | Msa1053260 | 0.805837 | 1.100934e-49 | -8.615850e-47 |
| Msa0530850 | Msa1072460 | -0.811455 | 6.941543e-51 | -8.615850e-47 |
| Msa0530850 | Msa1077670 | 0.815364 | 9.602560e-52 | -8.615850e-47 |
| Msa0530850 | Msa1087470 | 0.805668 | 1.194473e-49 | -8.615850e-47 |
| Msa0530850 | Msa1092820 | 0.831146 | 1.969002e-55 | -8.615850e-47 |
| Msa0530850 | Msa1095480 | 0.814977 | 1.170190e-51 | -8.615850e-47 |
| Msa0530850 | Msa1109570 | 0.863528 | 2.335053e-64 | -8.615850e-47 |
| Msa0530850 | Msa1171870 | 0.806916 | 6.520798e-50 | -8.615850e-47 |
| Msa0530850 | Msa1218650 | 0.805843 | 1.097488e-49 | -8.615850e-47 |
| Msa0530850 | Msa1235630 | 0.800477 | 1.414960e-48 | -8.615850e-47 |
| Msa0530850 | Msa1237030 | 0.819132 | 1.363308e-52 | -8.615850e-47 |
| Msa0530850 | Msa1267260 | 0.800744 | 1.248361e-48 | -8.615850e-47 |
| Msa0530850 | Msa1269580 | -0.810212 | 1.289786e-50 | -8.615850e-47 |
| Msa0530850 | Msa1280130 | 0.809596 | 1.749647e-50 | -8.615850e-47 |
| Msa0530850 | Msa1306430 | 0.816240 | 6.124183e-52 | -8.615850e-47 |
| Msa0530850 | Msa1316820 | 0.803888 | 2.811968e-49 | -8.615850e-47 |
| Msa0530850 | Msa1362880 | 0.806748 | 7.074510e-50 | -8.615850e-47 |
| Msa0530850 | Msa1369530 | 0.812736 | 3.648408e-51 | -8.615850e-47 |
| Msa0530850 | Msa1382410 | 0.814643 | 1.387561e-51 | -8.615850e-47 |
| Msa0530850 | Msa1390310 | 0.802416 | 5.670100e-49 | -8.615850e-47 |
| Msa0530850 | Msa1408790 | 0.808625 | 2.825729e-50 | -8.615850e-47 |
| Msa0530850 | Msa1429360 | -0.810090 | 1.370419e-50 | -8.615850e-47 |
| Msa0530850 | Msa1436040 | 0.803996 | 2.669323e-49 | -8.615850e-47 |
| Msa0530850 | Msa1439230 | 0.808772 | 2.628068e-50 | -8.615850e-47 |
| Msa0530850 | Msa1445420 | -0.805523 | 1.281077e-49 | -8.615850e-47 |
| Msa0530850 | Msa1456650 | 0.834735 | 2.523668e-56 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0530850 | MtrunA17_Chr4g0003801 | 96.923 | 195 | 6 | 0 | 1 | 195 | 1 | 195 | 7.87e-141 | 390 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0530850 | AT3G16190.1 | 73.469 | 196 | 51 | 1 | 1 | 195 | 1 | 196 | 8.50e-104 | 297 |
Find 71 sgRNAs with CRISPR-Local
Find 235 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTAGAGAAAGATTACATTTA+AGG | 0.047328 | 4_1:-4941531 | None:intergenic |
| CAATTCTCTGTCATTCTTAA+AGG | 0.112110 | 4_1:-4941570 | None:intergenic |
| GAATTTATGCTTTAAGATTT+TGG | 0.158961 | 4_1:-4945069 | None:intergenic |
| TCAAAGGCATTGATATCTTT+TGG | 0.220343 | 4_1:+4944838 | Msa0530850:three_prime_UTR |
| CGCTCCATTCTTGTAATGTT+GGG | 0.229591 | 4_1:-4944760 | None:intergenic |
| AGCGTGGAATTCTCATTGTT+TGG | 0.310184 | 4_1:+4941809 | Msa0530850:CDS |
| TCCACAGCCTTGATCACATT+TGG | 0.315072 | 4_1:-4941775 | None:intergenic |
| AGTTTGACTATTAATTGTTT+TGG | 0.322535 | 4_1:-4945218 | None:intergenic |
| GAGAGTCCTGTACACGTAAA+AGG | 0.348297 | 4_1:+4941736 | Msa0530850:CDS |
| CACCTTCATTCATTCCTTCA+AGG | 0.371638 | 4_1:+4943108 | Msa0530850:CDS |
| GCGTGGAATTCTCATTGTTT+GGG | 0.376059 | 4_1:+4941810 | Msa0530850:CDS |
| CCACAGCCTTGATCACATTT+GGG | 0.384227 | 4_1:-4941774 | None:intergenic |
| TACATACCAAGATGAATATC+AGG | 0.385772 | 4_1:-4943537 | None:intergenic |
| ACAGTTTGCCGGATACAGTT+TGG | 0.389834 | 4_1:-4943447 | None:intergenic |
| GCATCAACAAGAACAGTAAC+AGG | 0.405100 | 4_1:-4943498 | None:intergenic |
| TCGCTCCATTCTTGTAATGT+TGG | 0.406786 | 4_1:-4944761 | None:intergenic |
| TCATGTGGTGTTCAATTTCA+AGG | 0.419000 | 4_1:+4944814 | Msa0530850:three_prime_UTR |
| TATTTGAATATGTTATTTCA+CGG | 0.419742 | 4_1:-4944921 | None:intergenic |
| TTCAAACTCCAAACTGTATC+CGG | 0.422725 | 4_1:+4943439 | Msa0530850:CDS |
| CATTCATTCCTTCAAGGAGC+AGG | 0.425323 | 4_1:+4943114 | Msa0530850:CDS |
| CTTTAAGAATGACAGAGAAT+TGG | 0.427309 | 4_1:+4941571 | Msa0530850:exon |
| AGAGTTAACAGATCAAGCTT+TGG | 0.430465 | 4_1:-4944786 | None:intergenic |
| TATTGACTCCTGCTCCTTGA+AGG | 0.441112 | 4_1:-4943122 | None:intergenic |
| AAAATCTTAAAGCATAAATT+CGG | 0.442347 | 4_1:+4945071 | Msa0530850:three_prime_UTR |
| AAAGTTGGTCCGACCTCAAA+AGG | 0.458143 | 4_1:+4942994 | Msa0530850:CDS |
| GTGTAACCCGTGCCGATGCA+CGG | 0.458308 | 4_1:+4945009 | Msa0530850:three_prime_UTR |
| ATTATTTGAATATCAAAATA+CGG | 0.459378 | 4_1:+4944947 | Msa0530850:three_prime_UTR |
| GATGGGCTTGTCATTAAAGA+AGG | 0.477908 | 4_1:+4943039 | Msa0530850:CDS |
| CAGCGTCAAAGACAGTTTGC+CGG | 0.480576 | 4_1:-4943458 | None:intergenic |
| GAAGGTGCAGAATTAGTTGA+TGG | 0.488967 | 4_1:+4943021 | Msa0530850:CDS |
| ATTATGTATACTAAGTTACT+TGG | 0.503639 | 4_1:+4944890 | Msa0530850:three_prime_UTR |
| GTCAACCCGTGCATCGGCAC+GGG | 0.504902 | 4_1:-4945015 | None:intergenic |
| GCCACACCTGATATTCATCT+TGG | 0.508634 | 4_1:+4943531 | Msa0530850:CDS |
| TTATATGCAGAAGGGAAAGT+TGG | 0.508690 | 4_1:+4942979 | Msa0530850:CDS |
| CTGAACCGGTGTGACAGTTA+CGG | 0.509380 | 4_1:+4945037 | Msa0530850:three_prime_UTR |
| GTACGCGAACACGATCCCTT+GGG | 0.511368 | 4_1:+4942928 | Msa0530850:CDS |
| CGTCGGCATTTATATGCAGA+AGG | 0.514284 | 4_1:+4942970 | Msa0530850:CDS |
| GTCAATAGTCTGGTGGTCAC+TGG | 0.517321 | 4_1:+4943138 | Msa0530850:CDS |
| CAACCCCAACATTACAAGAA+TGG | 0.519375 | 4_1:+4944756 | Msa0530850:CDS |
| TGTTAACTCTTTGCATCATG+TGG | 0.522823 | 4_1:+4944799 | Msa0530850:three_prime_UTR |
| GATGCACGGGTTGACTGAAC+CGG | 0.525870 | 4_1:+4945023 | Msa0530850:three_prime_UTR |
| AGTCAACCCGTGCATCGGCA+CGG | 0.525999 | 4_1:-4945016 | None:intergenic |
| AGTACGCGAACACGATCCCT+TGG | 0.527450 | 4_1:+4942927 | Msa0530850:CDS |
| TGTCTTTGACGCTGTAGCGT+TGG | 0.527507 | 4_1:+4943467 | Msa0530850:CDS |
| GCTCCATTCTTGTAATGTTG+GGG | 0.538993 | 4_1:-4944759 | None:intergenic |
| AGGAGCAGGAGTCAATAGTC+TGG | 0.541704 | 4_1:+4943128 | Msa0530850:CDS |
| TGTTCAATTTCAAGGTTCAA+AGG | 0.555329 | 4_1:+4944822 | Msa0530850:three_prime_UTR |
| TGTAACCCGTGCCGATGCAC+GGG | 0.557705 | 4_1:+4945010 | Msa0530850:three_prime_UTR |
| CTCCTTGAAGGAATGAATGA+AGG | 0.561491 | 4_1:-4943110 | None:intergenic |
| ATGGGCTTGTCATTAAAGAA+GGG | 0.566328 | 4_1:+4943040 | Msa0530850:CDS |
| CCCAAATGTGATCAAGGCTG+TGG | 0.567094 | 4_1:+4941774 | Msa0530850:CDS |
| TCTTCTTGTAATCGACATGC+AGG | 0.585526 | 4_1:+4941605 | Msa0530850:CDS |
| CGACAACGAATGTGCAACAA+TGG | 0.588208 | 4_1:+4945107 | Msa0530850:three_prime_UTR |
| TGTTGTCCCAAATGTGATCA+AGG | 0.588465 | 4_1:+4941768 | Msa0530850:CDS |
| GGTTCAGTCAACCCGTGCAT+CGG | 0.589626 | 4_1:-4945021 | None:intergenic |
| GAGTTCAACATCTCTTCCCA+AGG | 0.590646 | 4_1:-4942944 | None:intergenic |
| GTCGGCATTTATATGCAGAA+GGG | 0.599928 | 4_1:+4942971 | Msa0530850:CDS |
| TGGGCTTGTCATTAAAGAAG+GGG | 0.604361 | 4_1:+4943041 | Msa0530850:CDS |
| ATTATAAACTTGTGAAGACA+AGG | 0.604917 | 4_1:+4943064 | Msa0530850:CDS |
| AAGGTGCAGAATTAGTTGAT+GGG | 0.614633 | 4_1:+4943022 | Msa0530850:CDS |
| CCGACCTCAAAAGGAAGTGA+AGG | 0.620565 | 4_1:+4943003 | Msa0530850:CDS |
| GAGATGTTGAACTCTTTCGT+CGG | 0.629670 | 4_1:+4942953 | Msa0530850:CDS |
| AGTCCTGTACACGTAAAAGG+AGG | 0.634745 | 4_1:+4941739 | Msa0530850:CDS |
| AGTTCAACATCTCTTCCCAA+GGG | 0.646248 | 4_1:-4942943 | None:intergenic |
| GTCCTGTACACGTAAAAGGA+GGG | 0.653977 | 4_1:+4941740 | Msa0530850:CDS |
| ACCAAGATGAATATCAGGTG+TGG | 0.664032 | 4_1:-4943532 | None:intergenic |
| GACAGAGAATTGGAATCACA+CGG | 0.667479 | 4_1:+4941581 | Msa0530850:CDS |
| GTGGAAATTGCTAGACAGCG+TGG | 0.681689 | 4_1:+4941793 | Msa0530850:CDS |
| AGCAGGAGTCAATAGTCTGG+TGG | 0.697795 | 4_1:+4943131 | Msa0530850:CDS |
| TTAGTCCGTAACTGTCACAC+CGG | 0.732730 | 4_1:-4945042 | None:intergenic |
| TGTGCAACAATGGTGCATTG+TGG | 0.734291 | 4_1:+4945117 | Msa0530850:three_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTATTTTTTTTGAGAAATTA+AGG | + | chr4_1:4941670-4941689 | Msa0530850:intron | 10.0% |
| !! | GTTCAATAATATTAATTTAA+TGG | + | chr4_1:4942341-4942360 | Msa0530850:intron | 10.0% |
| !! | ATTATTTGAATATCAAAATA+CGG | + | chr4_1:4944947-4944966 | Msa0530850:three_prime_UTR | 10.0% |
| !! | TAGATGTTAATAATAAGTAA+TGG | + | chr4_1:4943629-4943648 | Msa0530850:intron | 15.0% |
| !! | ATTAAAGGTTATTATAAATC+CGG | + | chr4_1:4943942-4943961 | Msa0530850:intron | 15.0% |
| !! | TAGAAAATGATATTATTCAT+TGG | - | chr4_1:4944166-4944185 | None:intergenic | 15.0% |
| !!! | TTTTCTATTTTGTTTGATTT+TGG | + | chr4_1:4944179-4944198 | Msa0530850:intron | 15.0% |
| !!! | TATTTGAATATGTTATTTCA+CGG | - | chr4_1:4944924-4944943 | None:intergenic | 15.0% |
| !! | AAAATCTTAAAGCATAAATT+CGG | + | chr4_1:4945071-4945090 | Msa0530850:three_prime_UTR | 15.0% |
| !! | TTAGAGAAAGATTACATTTA+AGG | - | chr4_1:4941534-4941553 | None:intergenic | 20.0% |
| !! | AATCTCAAAATTTCTAATAC+TGG | - | chr4_1:4943807-4943826 | None:intergenic | 20.0% |
| !! | TTAATACTATCTTAGAGTTT+AGG | - | chr4_1:4943927-4943946 | None:intergenic | 20.0% |
| !!! | AAACTCTAAGATAGTATTAA+AGG | + | chr4_1:4943927-4943946 | Msa0530850:intron | 20.0% |
| !!! | ATAAGCTTTAACTTGATAAT+GGG | - | chr4_1:4943972-4943991 | None:intergenic | 20.0% |
| !!! | AATAAGCTTTAACTTGATAA+TGG | - | chr4_1:4943973-4943992 | None:intergenic | 20.0% |
| !! | GTTAAAGCTTATTATAAAGT+CGG | + | chr4_1:4943980-4943999 | Msa0530850:intron | 20.0% |
| !! | ATGATATTATTCATTGGAAA+TGG | - | chr4_1:4944160-4944179 | None:intergenic | 20.0% |
| !!! | CTTTAAATCCAATTATTTTG+TGG | + | chr4_1:4944584-4944603 | Msa0530850:intron | 20.0% |
| !! | ATTATGTATACTAAGTTACT+TGG | + | chr4_1:4944890-4944909 | Msa0530850:three_prime_UTR | 20.0% |
| !!! | GAATTTATGCTTTAAGATTT+TGG | - | chr4_1:4945072-4945091 | None:intergenic | 20.0% |
| !! | AAATTAAGGATTCTGTTTCT+GGG | + | chr4_1:4941684-4941703 | Msa0530850:intron | 25.0% |
| !!! | AACTTCCTTTATCTTTGTTT+TGG | + | chr4_1:4941844-4941863 | Msa0530850:intron | 25.0% |
| !!! | ACTTCCTTTATCTTTGTTTT+GGG | + | chr4_1:4941845-4941864 | Msa0530850:intron | 25.0% |
| ! | AAATCCCAAAACAAAGATAA+AGG | - | chr4_1:4941852-4941871 | None:intergenic | 25.0% |
| ! | TTCAACTTAACAACATACTT+AGG | - | chr4_1:4941876-4941895 | None:intergenic | 25.0% |
| ! | TATGTACACATCACTATTAA+TGG | + | chr4_1:4942057-4942076 | Msa0530850:intron | 25.0% |
| !!! | CTAAATTGACTTGTTCAATT+TGG | - | chr4_1:4942094-4942113 | None:intergenic | 25.0% |
| ! | ATGCATAACAAATCATTAGA+CGG | + | chr4_1:4942279-4942298 | Msa0530850:intron | 25.0% |
| !! | TTCACTTGTTTGTGTATTTT+AGG | + | chr4_1:4942593-4942612 | Msa0530850:intron | 25.0% |
| ! | TATTCAAGCACTTATTTGTA+AGG | + | chr4_1:4942641-4942660 | Msa0530850:intron | 25.0% |
| ! | ATTCAAGCACTTATTTGTAA+GGG | + | chr4_1:4942642-4942661 | Msa0530850:intron | 25.0% |
| !!! | TAAGGGTTTTAGTCATTAAT+AGG | + | chr4_1:4942659-4942678 | Msa0530850:intron | 25.0% |
| ! | ATTATAAACTTGTGAAGACA+AGG | + | chr4_1:4943064-4943083 | Msa0530850:CDS | 25.0% |
| !! | AATATGAGCTTACAGTTTTA+TGG | + | chr4_1:4943183-4943202 | Msa0530850:intron | 25.0% |
| !!! | GCTATTTTAATTTGTTGTCA+TGG | - | chr4_1:4943314-4943333 | None:intergenic | 25.0% |
| !! | CAATGTAGAACTTTATTTGT+AGG | + | chr4_1:4943414-4943433 | Msa0530850:intron | 25.0% |
| ! | ATTTCAAATGTTGCATTTGA+TGG | + | chr4_1:4943566-4943585 | Msa0530850:intron | 25.0% |
| ! | ATCAAATTCTTGGACATATT+TGG | - | chr4_1:4943694-4943713 | None:intergenic | 25.0% |
| ! | AGTAATCATATGCAAACTAA+TGG | - | chr4_1:4943759-4943778 | None:intergenic | 25.0% |
| !! | ATACTGGTACAAATTTTAAG+AGG | - | chr4_1:4943791-4943810 | None:intergenic | 25.0% |
| !! | TGACTTGTATATTGGTTATA+CGG | + | chr4_1:4944326-4944345 | Msa0530850:intron | 25.0% |
| ! | TATCTACAAAAGTAGCTTAT+AGG | - | chr4_1:4944372-4944391 | None:intergenic | 25.0% |
| !!! | AGTTCATTATTTTGTATGAG+AGG | + | chr4_1:4944400-4944419 | Msa0530850:intron | 25.0% |
| ! | AATATTGTTGTAAAGACCAA+AGG | + | chr4_1:4944475-4944494 | Msa0530850:intron | 25.0% |
| ! | ATTGGATTTAAAGAATTGCA+GGG | - | chr4_1:4944577-4944596 | None:intergenic | 25.0% |
| ! | AATTGGATTTAAAGAATTGC+AGG | - | chr4_1:4944578-4944597 | None:intergenic | 25.0% |
| CAATTCTCTGTCATTCTTAA+AGG | - | chr4_1:4941573-4941592 | None:intergenic | 30.0% | |
| ! | CTTTAAGAATGACAGAGAAT+TGG | + | chr4_1:4941571-4941590 | Msa0530850:exon | 30.0% |
| GAAATTAAGGATTCTGTTTC+TGG | + | chr4_1:4941683-4941702 | Msa0530850:intron | 30.0% | |
| TAGTGATGTGTACATATGTT+TGG | - | chr4_1:4942053-4942072 | None:intergenic | 30.0% | |
| CATTAATATTGAACCCACTT+GGG | - | chr4_1:4942489-4942508 | None:intergenic | 30.0% | |
| TGTAAATATTCTGCTAGCAA+AGG | + | chr4_1:4942538-4942557 | Msa0530850:intron | 30.0% | |
| TGTTCTCTATTTCATCCAAA+AGG | + | chr4_1:4942774-4942793 | Msa0530850:intron | 30.0% | |
| ! | GTTTTATGGTTATGTACGTA+TGG | + | chr4_1:4943197-4943216 | Msa0530850:intron | 30.0% |
| TACATACCAAGATGAATATC+AGG | - | chr4_1:4943540-4943559 | None:intergenic | 30.0% | |
| GCATTTGATGGAACTTTATT+TGG | + | chr4_1:4943578-4943597 | Msa0530850:intron | 30.0% | |
| GATCTCTCTAATCAAATTCT+TGG | - | chr4_1:4943704-4943723 | None:intergenic | 30.0% | |
| TATATCTCTGATCTATGTGA+AGG | + | chr4_1:4943726-4943745 | Msa0530850:intron | 30.0% | |
| TGCATATGATTACTAGAGTT+TGG | + | chr4_1:4943765-4943784 | Msa0530850:intron | 30.0% | |
| !! | TTTGATTTTGGATTCCTATC+AGG | + | chr4_1:4944191-4944210 | Msa0530850:intron | 30.0% |
| ! | TTGATTTTGGATTCCTATCA+GGG | + | chr4_1:4944192-4944211 | Msa0530850:intron | 30.0% |
| TATATAGACCATCCGTTATT+TGG | + | chr4_1:4944234-4944253 | Msa0530850:intron | 30.0% | |
| ! | TAGTGGTATGACTTGTATAT+TGG | + | chr4_1:4944318-4944337 | Msa0530850:intron | 30.0% |
| ! | GACTTGTATATTGGTTATAC+GGG | + | chr4_1:4944327-4944346 | Msa0530850:intron | 30.0% |
| ! | ACTTGTATATTGGTTATACG+GGG | + | chr4_1:4944328-4944347 | Msa0530850:intron | 30.0% |
| TCAGGATTAAGGTTAAAACT+TGG | - | chr4_1:4944513-4944532 | None:intergenic | 30.0% | |
| ACCTTAATCCTGAATTTACA+TGG | + | chr4_1:4944520-4944539 | Msa0530850:intron | 30.0% | |
| ACCATGTAAATTCAGGATTA+AGG | - | chr4_1:4944524-4944543 | None:intergenic | 30.0% | |
| ! | CAAAGTTGATTACAGTCTAA+TGG | + | chr4_1:4944676-4944695 | Msa0530850:intron | 30.0% |
| TCTAATGGTGACTGATATTT+GGG | + | chr4_1:4944691-4944710 | Msa0530850:intron | 30.0% | |
| ! | ATTTTTCATGTCTGACACAT+TGG | - | chr4_1:4944726-4944745 | None:intergenic | 30.0% |
| GTGTCAGACATGAAAAATAT+AGG | + | chr4_1:4944728-4944747 | Msa0530850:CDS | 30.0% | |
| TGTTCAATTTCAAGGTTCAA+AGG | + | chr4_1:4944822-4944841 | Msa0530850:three_prime_UTR | 30.0% | |
| !!! | TCAAAGGCATTGATATCTTT+TGG | + | chr4_1:4944838-4944857 | Msa0530850:three_prime_UTR | 30.0% |
| CCTTATGACATTCGGAATAT+AGG | - | chr4_1:4941959-4941978 | None:intergenic | 35.0% | |
| CCTATATTCCGAATGTCATA+AGG | + | chr4_1:4941956-4941975 | Msa0530850:intron | 35.0% | |
| ACGCAAAACCTTATGACATT+CGG | - | chr4_1:4941967-4941986 | None:intergenic | 35.0% | |
| ! | ATATGTGGTGTCAAAGTTCT+TGG | + | chr4_1:4941989-4942008 | Msa0530850:intron | 35.0% |
| GTACATATGTTTGGAAGTCT+TGG | - | chr4_1:4942044-4942063 | None:intergenic | 35.0% | |
| ! | CTGAAGTGTTTGTGCAATAT+AGG | - | chr4_1:4942136-4942155 | None:intergenic | 35.0% |
| TATCGGTCATTGATCAATCA+AGG | + | chr4_1:4942185-4942204 | Msa0530850:intron | 35.0% | |
| AACACCTCTACTCAATTCAA+AGG | + | chr4_1:4942312-4942331 | Msa0530850:intron | 35.0% | |
| TGTTCCTTTGAATTGAGTAG+AGG | - | chr4_1:4942319-4942338 | None:intergenic | 35.0% | |
| CCATTAATATTGAACCCACT+TGG | - | chr4_1:4942490-4942509 | None:intergenic | 35.0% | |
| ! | CCAAGTGGGTTCAATATTAA+TGG | + | chr4_1:4942487-4942506 | Msa0530850:intron | 35.0% |
| CACAAACAAGTGAATGAATC+AGG | - | chr4_1:4942587-4942606 | None:intergenic | 35.0% | |
| ! | ACTCGTACATAGGTAGTTTT+AGG | - | chr4_1:4942696-4942715 | None:intergenic | 35.0% |
| TTATGAATGCACTCGTACAT+AGG | - | chr4_1:4942706-4942725 | None:intergenic | 35.0% | |
| TCAAGTCAAGAAATCTAAGC+AGG | + | chr4_1:4942727-4942746 | Msa0530850:intron | 35.0% | |
| AATCACATCAGGACATGATT+TGG | + | chr4_1:4942832-4942851 | Msa0530850:intron | 35.0% | |
| TTATATGCAGAAGGGAAAGT+TGG | + | chr4_1:4942979-4942998 | Msa0530850:CDS | 35.0% | |
| AAGGTGCAGAATTAGTTGAT+GGG | + | chr4_1:4943022-4943041 | Msa0530850:CDS | 35.0% | |
| ATGGGCTTGTCATTAAAGAA+GGG | + | chr4_1:4943040-4943059 | Msa0530850:CDS | 35.0% | |
| TTCAAACTCCAAACTGTATC+CGG | + | chr4_1:4943439-4943458 | Msa0530850:CDS | 35.0% | |
| TTGAAAGTCTCAACTCACAT+TGG | + | chr4_1:4943833-4943852 | Msa0530850:intron | 35.0% | |
| !!! | TCTTTTTAGCTGGTTTTGCA+TGG | + | chr4_1:4943886-4943905 | Msa0530850:intron | 35.0% |
| !! | TGGTTTTGCATGGTTAAGTA+AGG | + | chr4_1:4943896-4943915 | Msa0530850:intron | 35.0% |
| !! | AGCTTTAACTTGATAATGGG+TGG | - | chr4_1:4943969-4943988 | None:intergenic | 35.0% |
| TCTTGCAGTTAGAAACCTTA+TGG | + | chr4_1:4944054-4944073 | Msa0530850:intron | 35.0% | |
| !!! | AGAGGAATGTCTTTTTTCTG+AGG | + | chr4_1:4944086-4944105 | Msa0530850:intron | 35.0% |
| ! | TGATTTTGGATTCCTATCAG+GGG | + | chr4_1:4944193-4944212 | Msa0530850:intron | 35.0% |
| GTCATACCACTATCTAATGT+GGG | - | chr4_1:4944310-4944329 | None:intergenic | 35.0% | |
| AGTCATACCACTATCTAATG+TGG | - | chr4_1:4944311-4944330 | None:intergenic | 35.0% | |
| ! | CTTGTATATTGGTTATACGG+GGG | + | chr4_1:4944329-4944348 | Msa0530850:intron | 35.0% |
| ! | TTGGCAAGAAATTTTGCCTT+TGG | - | chr4_1:4944494-4944513 | None:intergenic | 35.0% |
| CAGTGTAACCATGTAAATTC+AGG | - | chr4_1:4944531-4944550 | None:intergenic | 35.0% | |
| CTGAATTTACATGGTTACAC+TGG | + | chr4_1:4944529-4944548 | Msa0530850:intron | 35.0% | |
| GAACACAGCCACAAAATAAT+TGG | - | chr4_1:4944595-4944614 | None:intergenic | 35.0% | |
| GTCTAATGGTGACTGATATT+TGG | + | chr4_1:4944690-4944709 | Msa0530850:intron | 35.0% | |
| AGAGTTAACAGATCAAGCTT+TGG | - | chr4_1:4944789-4944808 | None:intergenic | 35.0% | |
| TGTTAACTCTTTGCATCATG+TGG | + | chr4_1:4944799-4944818 | Msa0530850:three_prime_UTR | 35.0% | |
| TCATGTGGTGTTCAATTTCA+AGG | + | chr4_1:4944814-4944833 | Msa0530850:three_prime_UTR | 35.0% | |
| ! | TCTTTTGGATAGCTGCTAAA+TGG | + | chr4_1:4944853-4944872 | Msa0530850:three_prime_UTR | 35.0% |
| GACAGAGAATTGGAATCACA+CGG | + | chr4_1:4941581-4941600 | Msa0530850:CDS | 40.0% | |
| TCTTCTTGTAATCGACATGC+AGG | + | chr4_1:4941605-4941624 | Msa0530850:CDS | 40.0% | |
| TGTTGTCCCAAATGTGATCA+AGG | + | chr4_1:4941768-4941787 | Msa0530850:CDS | 40.0% | |
| AGCGTGGAATTCTCATTGTT+TGG | + | chr4_1:4941809-4941828 | Msa0530850:CDS | 40.0% | |
| GCGTGGAATTCTCATTGTTT+GGG | + | chr4_1:4941810-4941829 | Msa0530850:CDS | 40.0% | |
| !! | GATTAGTCTCACATCGACTA+CGG | + | chr4_1:4941904-4941923 | Msa0530850:intron | 40.0% |
| ! | GAATGTCATAAGGTTTTGCG+TGG | + | chr4_1:4941966-4941985 | Msa0530850:intron | 40.0% |
| ! | TAAGGTTTTGCGTGGATATG+TGG | + | chr4_1:4941974-4941993 | Msa0530850:intron | 40.0% |
| GCACAAACACTTCAGATTGA+AGG | + | chr4_1:4942141-4942160 | Msa0530850:intron | 40.0% | |
| ! | ACTTCAGATTGAAGGCATGT+CGG | + | chr4_1:4942149-4942168 | Msa0530850:intron | 40.0% |
| ! | ATTCTCACCGGTGTCAATTT+GGG | - | chr4_1:4942405-4942424 | None:intergenic | 40.0% |
| AATATTGAACCCACTTGGGT+TGG | - | chr4_1:4942485-4942504 | None:intergenic | 40.0% | |
| ! | TAACGGCAATTACAGCCTTT+TGG | - | chr4_1:4942792-4942811 | None:intergenic | 40.0% |
| GCATCAATTGATGCGGTTAA+CGG | - | chr4_1:4942809-4942828 | None:intergenic | 40.0% | |
| GATTGTGGCATCAATTGATG+CGG | - | chr4_1:4942816-4942835 | None:intergenic | 40.0% | |
| ATTGATGCCACAATCACATC+AGG | + | chr4_1:4942821-4942840 | Msa0530850:intron | 40.0% | |
| ATCATGTCCTGATGTGATTG+TGG | - | chr4_1:4942831-4942850 | None:intergenic | 40.0% | |
| TTGTCTCTTTCAACTGTCTC+AGG | + | chr4_1:4942903-4942922 | Msa0530850:intron | 40.0% | |
| AGTTCAACATCTCTTCCCAA+GGG | - | chr4_1:4942946-4942965 | None:intergenic | 40.0% | |
| GAGATGTTGAACTCTTTCGT+CGG | + | chr4_1:4942953-4942972 | Msa0530850:CDS | 40.0% | |
| GTCGGCATTTATATGCAGAA+GGG | + | chr4_1:4942971-4942990 | Msa0530850:CDS | 40.0% | |
| ! | GAAGGTGCAGAATTAGTTGA+TGG | + | chr4_1:4943021-4943040 | Msa0530850:CDS | 40.0% |
| ! | GATGGGCTTGTCATTAAAGA+AGG | + | chr4_1:4943039-4943058 | Msa0530850:CDS | 40.0% |
| TGGGCTTGTCATTAAAGAAG+GGG | + | chr4_1:4943041-4943060 | Msa0530850:CDS | 40.0% | |
| CACCTTCATTCATTCCTTCA+AGG | + | chr4_1:4943108-4943127 | Msa0530850:CDS | 40.0% | |
| CTCCTTGAAGGAATGAATGA+AGG | - | chr4_1:4943113-4943132 | None:intergenic | 40.0% | |
| ACTTATGCGACTCTTTGTGA+AGG | + | chr4_1:4943252-4943271 | Msa0530850:intron | 40.0% | |
| GCATCAACAAGAACAGTAAC+AGG | - | chr4_1:4943501-4943520 | None:intergenic | 40.0% | |
| ACCAAGATGAATATCAGGTG+TGG | - | chr4_1:4943535-4943554 | None:intergenic | 40.0% | |
| AAAACCAGCTAAAAAGAGCG+AGG | - | chr4_1:4943883-4943902 | None:intergenic | 40.0% | |
| !! | TAACTTGATAATGGGTGGTC+CGG | - | chr4_1:4943964-4943983 | None:intergenic | 40.0% |
| !! | CAAGATGACTCGATAATGGA+TGG | - | chr4_1:4944007-4944026 | None:intergenic | 40.0% |
| ACTGCAAGATGACTCGATAA+TGG | - | chr4_1:4944011-4944030 | None:intergenic | 40.0% | |
| TCATCTTGCAGTAAGCAAGA+GGG | + | chr4_1:4944019-4944038 | Msa0530850:intron | 40.0% | |
| ! | ACCTTATGGTTTGCACAAAG+AGG | + | chr4_1:4944068-4944087 | Msa0530850:intron | 40.0% |
| TCCTCTTTGTGCAAACCATA+AGG | - | chr4_1:4944072-4944091 | None:intergenic | 40.0% | |
| ! | GTGCTCTAGATGTATAGTCT+AGG | + | chr4_1:4944268-4944287 | Msa0530850:intron | 40.0% |
| AATGGTGACTGATATTTGGG+TGG | + | chr4_1:4944694-4944713 | Msa0530850:intron | 40.0% | |
| CAACCCCAACATTACAAGAA+TGG | + | chr4_1:4944756-4944775 | Msa0530850:CDS | 40.0% | |
| GCTCCATTCTTGTAATGTTG+GGG | - | chr4_1:4944762-4944781 | None:intergenic | 40.0% | |
| CGCTCCATTCTTGTAATGTT+GGG | - | chr4_1:4944763-4944782 | None:intergenic | 40.0% | |
| TCGCTCCATTCTTGTAATGT+TGG | - | chr4_1:4944764-4944783 | None:intergenic | 40.0% | |
| GAGAGTCCTGTACACGTAAA+AGG | + | chr4_1:4941736-4941755 | Msa0530850:CDS | 45.0% | |
| AGTCCTGTACACGTAAAAGG+AGG | + | chr4_1:4941739-4941758 | Msa0530850:CDS | 45.0% | |
| GTCCTGTACACGTAAAAGGA+GGG | + | chr4_1:4941740-4941759 | Msa0530850:CDS | 45.0% | |
| ! | TTCCCTCCTTTTACGTGTAC+AGG | - | chr4_1:4941745-4941764 | None:intergenic | 45.0% |
| CCACAGCCTTGATCACATTT+GGG | - | chr4_1:4941777-4941796 | None:intergenic | 45.0% | |
| TCCACAGCCTTGATCACATT+TGG | - | chr4_1:4941778-4941797 | None:intergenic | 45.0% | |
| TCGACTACGGTGTTTGATGT+TGG | + | chr4_1:4941917-4941936 | Msa0530850:intron | 45.0% | |
| GGAAGTCTTGGAGAGTAACA+AGG | - | chr4_1:4942032-4942051 | None:intergenic | 45.0% | |
| !! | TCGGTGTCATGTGGCTATAT+CGG | + | chr4_1:4942168-4942187 | Msa0530850:intron | 45.0% |
| TAACCCACCCAAATTGACAC+CGG | + | chr4_1:4942395-4942414 | Msa0530850:intron | 45.0% | |
| ! | GATTCTCACCGGTGTCAATT+TGG | - | chr4_1:4942406-4942425 | None:intergenic | 45.0% |
| GAGTTCAACATCTCTTCCCA+AGG | - | chr4_1:4942947-4942966 | None:intergenic | 45.0% | |
| CGTCGGCATTTATATGCAGA+AGG | + | chr4_1:4942970-4942989 | Msa0530850:CDS | 45.0% | |
| ! | AAAGTTGGTCCGACCTCAAA+AGG | + | chr4_1:4942994-4943013 | Msa0530850:CDS | 45.0% |
| !!! | CCTTCACTTCCTTTTGAGGT+CGG | - | chr4_1:4943006-4943025 | None:intergenic | 45.0% |
| ! | TGCACCTTCACTTCCTTTTG+AGG | - | chr4_1:4943010-4943029 | None:intergenic | 45.0% |
| CATTCATTCCTTCAAGGAGC+AGG | + | chr4_1:4943114-4943133 | Msa0530850:CDS | 45.0% | |
| !! | TATTGACTCCTGCTCCTTGA+AGG | - | chr4_1:4943125-4943144 | None:intergenic | 45.0% |
| ACAGTTTGCCGGATACAGTT+TGG | - | chr4_1:4943450-4943469 | None:intergenic | 45.0% | |
| GCCACACCTGATATTCATCT+TGG | + | chr4_1:4943531-4943550 | Msa0530850:CDS | 45.0% | |
| !! | TGATCCTCGCTCTTTTTAGC+TGG | + | chr4_1:4943876-4943895 | Msa0530850:intron | 45.0% |
| GTCATCTTGCAGTAAGCAAG+AGG | + | chr4_1:4944018-4944037 | Msa0530850:intron | 45.0% | |
| CATCTTGCAGTAAGCAAGAG+GGG | + | chr4_1:4944020-4944039 | Msa0530850:intron | 45.0% | |
| GAGAGTCCCACATTAGATAG+TGG | + | chr4_1:4944301-4944320 | Msa0530850:intron | 45.0% | |
| ! | GTATATTGGTTATACGGGGG+AGG | + | chr4_1:4944332-4944351 | Msa0530850:intron | 45.0% |
| CTTGAGGGAAGCTAGAGTAT+CGG | - | chr4_1:4944617-4944636 | None:intergenic | 45.0% | |
| GCAAAATCTACCTGCCTTGA+GGG | - | chr4_1:4944632-4944651 | None:intergenic | 45.0% | |
| AGCAAAATCTACCTGCCTTG+AGG | - | chr4_1:4944633-4944652 | None:intergenic | 45.0% | |
| TTAGTCCGTAACTGTCACAC+CGG | - | chr4_1:4945045-4945064 | None:intergenic | 45.0% | |
| CGACAACGAATGTGCAACAA+TGG | + | chr4_1:4945107-4945126 | Msa0530850:three_prime_UTR | 45.0% | |
| TGTGCAACAATGGTGCATTG+TGG | + | chr4_1:4945117-4945136 | Msa0530850:three_prime_UTR | 45.0% | |
| !!! | TCATTATTTTTTTTTTTTTT+TGG | - | chr4_1:4941486-4941505 | None:intergenic | 5.0% |
| CCCAAATGTGATCAAGGCTG+TGG | + | chr4_1:4941774-4941793 | Msa0530850:CDS | 50.0% | |
| GTGGAAATTGCTAGACAGCG+TGG | + | chr4_1:4941793-4941812 | Msa0530850:CDS | 50.0% | |
| ! | TCACCGGTGTCAATTTGGGT+GGG | - | chr4_1:4942401-4942420 | None:intergenic | 50.0% |
| GTCTCAGGTTCGATTCTCAC+CGG | - | chr4_1:4942417-4942436 | None:intergenic | 50.0% | |
| !! | TGGCCTAGTGGTATTGGCTT+GGG | - | chr4_1:4942465-4942484 | None:intergenic | 50.0% |
| !! | TTGGCCTAGTGGTATTGGCT+TGG | - | chr4_1:4942466-4942485 | None:intergenic | 50.0% |
| !! | TTGGGTTGGCCTAGTGGTAT+TGG | - | chr4_1:4942471-4942490 | None:intergenic | 50.0% |
| CCGACCTCAAAAGGAAGTGA+AGG | + | chr4_1:4943003-4943022 | Msa0530850:CDS | 50.0% | |
| AGGAGCAGGAGTCAATAGTC+TGG | + | chr4_1:4943128-4943147 | Msa0530850:CDS | 50.0% | |
| AGCAGGAGTCAATAGTCTGG+TGG | + | chr4_1:4943131-4943150 | Msa0530850:CDS | 50.0% | |
| GTCAATAGTCTGGTGGTCAC+TGG | + | chr4_1:4943138-4943157 | Msa0530850:CDS | 50.0% | |
| CAGCGTCAAAGACAGTTTGC+CGG | - | chr4_1:4943461-4943480 | None:intergenic | 50.0% | |
| TGTCTTTGACGCTGTAGCGT+TGG | + | chr4_1:4943467-4943486 | Msa0530850:CDS | 50.0% | |
| ! | TTCTGAGGAGCTCTTGCTCT+AGG | + | chr4_1:4944101-4944120 | Msa0530850:intron | 50.0% |
| TCTGAGGAGCTCTTGCTCTA+GGG | + | chr4_1:4944102-4944121 | Msa0530850:intron | 50.0% | |
| GACTCTGATACACCCCTGAT+AGG | - | chr4_1:4944208-4944227 | None:intergenic | 50.0% | |
| CATCCGTTATTTGGCCACGT+GGG | + | chr4_1:4944243-4944262 | Msa0530850:intron | 50.0% | |
| ! | CAAGTGTGTTGACGTGCATG+AGG | + | chr4_1:4944442-4944461 | Msa0530850:intron | 50.0% |
| ! | CGATACTCTAGCTTCCCTCA+AGG | + | chr4_1:4944615-4944634 | Msa0530850:intron | 50.0% |
| CTGAACCGGTGTGACAGTTA+CGG | + | chr4_1:4945037-4945056 | Msa0530850:three_prime_UTR | 50.0% | |
| !! | GAAGGCATGTCGGTGTCATG+TGG | + | chr4_1:4942159-4942178 | Msa0530850:intron | 55.0% |
| ! | CTCACCGGTGTCAATTTGGG+TGG | - | chr4_1:4942402-4942421 | None:intergenic | 55.0% |
| GAATCGAACCTGAGACCTCG+AGG | + | chr4_1:4942421-4942440 | Msa0530850:intron | 55.0% | |
| !! | GGCCTAGTGGTATTGGCTTG+GGG | - | chr4_1:4942464-4942483 | None:intergenic | 55.0% |
| TACCACTAGGCCAACCCAAG+TGG | + | chr4_1:4942472-4942491 | Msa0530850:intron | 55.0% | |
| ACCACTAGGCCAACCCAAGT+GGG | + | chr4_1:4942473-4942492 | Msa0530850:intron | 55.0% | |
| AGTACGCGAACACGATCCCT+TGG | + | chr4_1:4942927-4942946 | Msa0530850:CDS | 55.0% | |
| GTACGCGAACACGATCCCTT+GGG | + | chr4_1:4942928-4942947 | Msa0530850:CDS | 55.0% | |
| CTTGCAGTAAGCAAGAGGGG+AGG | + | chr4_1:4944023-4944042 | Msa0530850:intron | 55.0% | |
| ! | CCACGTGGCCAAATAACGGA+TGG | - | chr4_1:4944245-4944264 | None:intergenic | 55.0% |
| CCATCCGTTATTTGGCCACG+TGG | + | chr4_1:4944242-4944261 | Msa0530850:intron | 55.0% | |
| CGACCCACGTGGCCAAATAA+CGG | - | chr4_1:4944249-4944268 | None:intergenic | 55.0% | |
| ! | ACTCTAGCTTCCCTCAAGGC+AGG | + | chr4_1:4944619-4944638 | Msa0530850:intron | 55.0% |
| GGTTCAGTCAACCCGTGCAT+CGG | - | chr4_1:4945024-4945043 | None:intergenic | 55.0% | |
| ! | GATGCACGGGTTGACTGAAC+CGG | + | chr4_1:4945023-4945042 | Msa0530850:three_prime_UTR | 55.0% |
| TCGAACCTGAGACCTCGAGG+AGG | + | chr4_1:4942424-4942443 | Msa0530850:intron | 60.0% | |
| !! | GTGGTATTGGCTTGGGGCCT+GGG | - | chr4_1:4942458-4942477 | None:intergenic | 60.0% |
| !! | AGTGGTATTGGCTTGGGGCC+TGG | - | chr4_1:4942459-4942478 | None:intergenic | 60.0% |
| GGCCCCAAGCCAATACCACT+AGG | + | chr4_1:4942459-4942478 | Msa0530850:intron | 60.0% | |
| !! | ACCCACTTGGGTTGGCCTAG+TGG | - | chr4_1:4942477-4942496 | None:intergenic | 60.0% |
| ! | CATCTAGAGCACGACCCACG+TGG | - | chr4_1:4944260-4944279 | None:intergenic | 60.0% |
| ! | GTGTAACCCGTGCCGATGCA+CGG | + | chr4_1:4945009-4945028 | Msa0530850:three_prime_UTR | 60.0% |
| ! | TGTAACCCGTGCCGATGCAC+GGG | + | chr4_1:4945010-4945029 | Msa0530850:three_prime_UTR | 60.0% |
| ! | AGTCAACCCGTGCATCGGCA+CGG | - | chr4_1:4945019-4945038 | None:intergenic | 60.0% |
| GTGCTCCTCCTCGAGGTCTC+AGG | - | chr4_1:4942432-4942451 | None:intergenic | 65.0% | |
| ! | TGGGAGTGTGCTCCTCCTCG+AGG | - | chr4_1:4942439-4942458 | None:intergenic | 65.0% |
| ! | TCGAGGAGGAGCACACTCCC+AGG | + | chr4_1:4942438-4942457 | Msa0530850:intron | 65.0% |
| ! | GTCAACCCGTGCATCGGCAC+GGG | - | chr4_1:4945018-4945037 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 4941474 | 4945238 | 4941474 | ID=Msa0530850;Name=Msa0530850 |
| chr4_1 | mRNA | 4941474 | 4945238 | 4941474 | ID=Msa0530850-mRNA-1;Parent=Msa0530850;Name=Msa0530850-mRNA-1;_AED=0.01;_eAED=0.01;_QI=105|1|1|1|1|1|5|442|195 |
| chr4_1 | exon | 4941474 | 4941626 | 4941474 | ID=Msa0530850-mRNA-1:exon:1480;Parent=Msa0530850-mRNA-1 |
| chr4_1 | exon | 4941718 | 4941831 | 4941718 | ID=Msa0530850-mRNA-1:exon:1481;Parent=Msa0530850-mRNA-1 |
| chr4_1 | exon | 4942925 | 4943159 | 4942925 | ID=Msa0530850-mRNA-1:exon:1482;Parent=Msa0530850-mRNA-1 |
| chr4_1 | exon | 4943436 | 4943552 | 4943436 | ID=Msa0530850-mRNA-1:exon:1483;Parent=Msa0530850-mRNA-1 |
| chr4_1 | exon | 4944723 | 4945238 | 4944723 | ID=Msa0530850-mRNA-1:exon:1484;Parent=Msa0530850-mRNA-1 |
| chr4_1 | five_prime_UTR | 4941474 | 4941578 | 4941474 | ID=Msa0530850-mRNA-1:five_prime_utr;Parent=Msa0530850-mRNA-1 |
| chr4_1 | CDS | 4941579 | 4941626 | 4941579 | ID=Msa0530850-mRNA-1:cds;Parent=Msa0530850-mRNA-1 |
| chr4_1 | CDS | 4941718 | 4941831 | 4941718 | ID=Msa0530850-mRNA-1:cds;Parent=Msa0530850-mRNA-1 |
| chr4_1 | CDS | 4942925 | 4943159 | 4942925 | ID=Msa0530850-mRNA-1:cds;Parent=Msa0530850-mRNA-1 |
| chr4_1 | CDS | 4943436 | 4943552 | 4943436 | ID=Msa0530850-mRNA-1:cds;Parent=Msa0530850-mRNA-1 |
| chr4_1 | CDS | 4944723 | 4944796 | 4944723 | ID=Msa0530850-mRNA-1:cds;Parent=Msa0530850-mRNA-1 |
| chr4_1 | three_prime_UTR | 4944797 | 4945238 | 4944797 | ID=Msa0530850-mRNA-1:three_prime_utr;Parent=Msa0530850-mRNA-1 |
| Gene Sequence |
| Protein sequence |
