AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1445420

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1445420 MtrunA17_Chr3g0135621 97.521 605 15 0 1 605 1 605 0.0 1134
Msa1445420 MtrunA17_Chr3g0135631 96.278 403 15 0 203 605 1 403 0.0 714
Msa1445420 MtrunA17_Chr1g0151761 61.252 671 150 19 1 605 1 627 0.0 597
Msa1445420 MtrunA17_Chr3g0135641 98.942 189 2 0 1 189 1 189 1.45e-131 383
Msa1445420 MtrunA17_Chr3g0135641 46.377 69 34 2 182 249 90 156 7.70e-13 67.8
Msa1445420 MtrunA17_Chr5g0396111 56.069 173 72 1 82 250 181 353 6.54e-58 198
Msa1445420 MtrunA17_Chr7g0217251 27.010 311 153 16 68 346 141 409 5.24e-12 68.9
Msa1445420 MtrunA17_Chr1g0197441 29.032 217 123 6 89 291 39 238 1.06e-11 66.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1445420 AT2G25970.1 53.546 564 181 21 26 553 66 584 2.72e-130 396
Msa1445420 AT1G33680.1 35.739 568 246 27 86 599 232 734 2.79e-56 203
Msa1445420 AT4G10070.1 44.961 258 124 7 82 328 172 422 3.03e-52 191
Msa1445420 AT5G04430.2 30.288 208 125 7 89 289 38 232 1.21e-13 72.8
Msa1445420 AT5G04430.1 31.548 168 102 4 89 253 38 195 2.82e-12 68.6

Find 266 sgRNAs with CRISPR-Local

Find 425 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCCATGCCATTTGCAGAATT+TGG 0.156164 tig0031099:+33290 Msa1445420:three_prime_UTR
TCTAGCCAGGCCCCGCCTTC+TGG 0.193239 tig0031099:+31915 Msa1445420:CDS
GGTAGGGTTGGTGTTCTTAT+TGG 0.218158 tig0031099:+28463 Msa1445420:CDS
TTCTACCGGGGCACGAATTC+AGG 0.220193 tig0031099:+29809 Msa1445420:CDS
GGAACTTCGCAGTTCATTTC+AGG 0.227165 tig0031099:-33270 None:intergenic
GACTAGGATGGTTGAACTTA+TGG 0.236098 tig0031099:+28576 Msa1445420:CDS
CATAGATGTTGCTATCAAAA+TGG 0.245666 tig0031099:-32228 None:intergenic
CAGAATCGTCTCAGAAATTC+AGG 0.249484 tig0031099:+31105 Msa1445420:intron
CAGTAGTGGGTTGGGAAGTT+TGG 0.252253 tig0031099:-31674 None:intergenic
CTCCTCCTTTACCGATTATA+AGG 0.263800 tig0031099:-29764 None:intergenic
TAGGCTGAAGCTGGGGCTTC+TGG 0.266896 tig0031099:+29569 Msa1445420:intron
TAATGGTTATTATCGTCCTT+TGG 0.283838 tig0031099:+32181 Msa1445420:three_prime_UTR
GGTTGGTAGCATAGCCTTGC+TGG 0.287848 tig0031099:-31701 None:intergenic
TTCACTTTCTTCCTCTCTAT+AGG 0.289785 tig0031099:+28148 Msa1445420:five_prime_UTR
ATTACTCCCACTGCCATAAC+TGG 0.291727 tig0031099:-31601 None:intergenic
CTCTATAGGGTTTGTTTCAA+TGG 0.295151 tig0031099:+28162 Msa1445420:exon
AGACGGATGGTTGCACAATC+TGG 0.309169 tig0031099:+29602 Msa1445420:CDS
ACCATCCTAGTCTGAGAATT+AGG 0.309685 tig0031099:-28565 None:intergenic
CTTTCTGTTGATGTATCACC+TGG 0.313635 tig0031099:-30020 None:intergenic
TCACTTTCTTCCTCTCTATA+GGG 0.320093 tig0031099:+28149 Msa1445420:five_prime_UTR
TCTCCCCACACCTTATTGTT+TGG 0.320962 tig0031099:-29650 None:intergenic
AGTAGTGGGTTGGGAAGTTT+GGG 0.330555 tig0031099:-31673 None:intergenic
TCATATGGAAATAGTTCTTA+TGG 0.338429 tig0031099:+32050 Msa1445420:CDS
GAAACTCCTCAACCAGGTTA+TGG 0.345359 tig0031099:+31729 Msa1445420:CDS
CTTTAGGTTGGCCTTATAAT+CGG 0.348223 tig0031099:+29753 Msa1445420:intron
GACTGACCATAGCCTCCTGC+TGG 0.350562 tig0031099:-31882 None:intergenic
TATAATGCGCAACAACAATC+TGG 0.353841 tig0031099:+31528 Msa1445420:CDS
CCGGTGGATATTCCGCCAAC+TGG 0.354362 tig0031099:+31307 Msa1445420:CDS
AACCTCCTTCCTCTGGTTAT+AGG 0.356288 tig0031099:+31466 Msa1445420:CDS
TTTGCTGTTGCTGGGGTTGT+TGG 0.358645 tig0031099:-31392 None:intergenic
GTTATCGGACTTGGTTCGTT+TGG 0.360575 tig0031099:-28341 None:intergenic
ACCGTGGAATAAATGTTAAA+AGG 0.360683 tig0031099:+33317 Msa1445420:three_prime_UTR
AACTTCTTGAGCTCGTTGTT+TGG 0.361408 tig0031099:-28269 None:intergenic
GAAGCTGGGGCTTCTGGCGG+TGG 0.361827 tig0031099:+29575 Msa1445420:CDS
AGTGCAAATCCACCTGCTTA+TGG 0.362303 tig0031099:+31840 Msa1445420:CDS
TTTGCTGATTCAATTTGATC+AGG 0.363459 tig0031099:-30065 None:intergenic
AATGGTTATTATCGTCCTTT+GGG 0.363624 tig0031099:+32182 Msa1445420:three_prime_UTR
AGTTGGAAGTGTGCCCCTCT+TGG 0.365119 tig0031099:-31629 None:intergenic
GATTCAAGTTACTCGTGATA+TGG 0.369842 tig0031099:+28534 Msa1445420:CDS
GTGTGGGAAGGAGTTGGATT+AGG 0.370858 tig0031099:-28119 None:intergenic
CCATAGGCCGCTTGGGAGGT+AGG 0.372582 tig0031099:-31759 None:intergenic
TTTATTAACTAGGCTGAAGC+TGG 0.373039 tig0031099:+29560 Msa1445420:intron
GAGGGGCACACTTCCAACTA+TGG 0.374400 tig0031099:+31633 Msa1445420:CDS
CCTGCACAACAAGCTGGTTA+TGG 0.376085 tig0031099:+31198 Msa1445420:CDS
GATGCAAATACCAAACAATA+AGG 0.377129 tig0031099:+29640 Msa1445420:CDS
TTATCGGACTTGGTTCGTTT+GGG 0.378392 tig0031099:-28340 None:intergenic
TGGTTATAGGCAACCTGGAC+AGG 0.386233 tig0031099:+31479 Msa1445420:CDS
GAGTTCGATGTCCGTGGCGG+TGG 0.387307 tig0031099:-28233 None:intergenic
AAACTCCTCAACCAGGTTAT+GGG 0.389331 tig0031099:+31730 Msa1445420:CDS
TGTTGCTGATCATATGTTTG+TGG 0.391746 tig0031099:-31561 None:intergenic
GGTCCTCCACAGCCAGCTGA+TGG 0.395783 tig0031099:+31423 Msa1445420:CDS
GTTGGTGTTCTTATTGGTAA+AGG 0.399271 tig0031099:+28469 Msa1445420:CDS
TGGAGCACCGTTATCGGACT+TGG 0.399369 tig0031099:-28350 None:intergenic
CCTACCTCCCAAGCGGCCTA+TGG 0.399491 tig0031099:+31759 Msa1445420:CDS
TTCCATATGACGGTGGAGTC+TGG 0.403625 tig0031099:-32037 None:intergenic
CCCCAGCAACAGCAAAATCC+TGG 0.404109 tig0031099:+31399 Msa1445420:CDS
AGTCAACCACAGTCTGGTTA+TGG 0.407882 tig0031099:+31783 Msa1445420:CDS
GGCCAGACTCCACCGTCATA+TGG 0.410070 tig0031099:+32035 Msa1445420:CDS
TATGATCAGCAACAAGGTTA+TGG 0.411167 tig0031099:+31570 Msa1445420:CDS
AACTGCACAGGCTGTTCCAC+AGG 0.415355 tig0031099:+32115 Msa1445420:CDS
AATCCCGACCACCGTCTAGC+TGG 0.415564 tig0031099:+31160 Msa1445420:CDS
CATAGGCCGCTTGGGAGGTA+GGG 0.417451 tig0031099:-31758 None:intergenic
CATATCCAGAAGGCGGGGCC+TGG 0.418708 tig0031099:-31920 None:intergenic
ACTAGGATGGTTGAACTTAT+GGG 0.418819 tig0031099:+28577 Msa1445420:CDS
GCTTGTTGTGCAGGAGCAGC+AGG 0.419616 tig0031099:-31189 None:intergenic
TCTGGTTATGGACCTGGTTA+TGG 0.421938 tig0031099:+31795 Msa1445420:CDS
CTGGTTGAGGAGTTTCTTGT+TGG 0.423458 tig0031099:-31722 None:intergenic
TATGGCTCTGCTCCCAGTTA+TGG 0.425707 tig0031099:+31588 Msa1445420:CDS
AGGCAACCTGGACAGGGTTA+TGG 0.428875 tig0031099:+31486 Msa1445420:CDS
CCATAGCCTCCTGCTGGGCT+AGG 0.435681 tig0031099:-31876 None:intergenic
CTGGGCAACAGTAGTGGGTT+GGG 0.439592 tig0031099:-31682 None:intergenic
CAACAAGCTGGTTATGGCTA+TGG 0.440407 tig0031099:+31204 Msa1445420:CDS
TATTATCGTCCTTTGGGATG+TGG 0.443967 tig0031099:+32188 Msa1445420:three_prime_UTR
CGATTGTGGAGCACCGTTAT+CGG 0.444219 tig0031099:-28356 None:intergenic
GACGGATGGTTGCACAATCT+GGG 0.446354 tig0031099:+29603 Msa1445420:CDS
CGATAACGGTGCTCCACAAT+CGG 0.446619 tig0031099:+28357 Msa1445420:CDS
TTTGATAGCAACATCTATGT+TGG 0.448394 tig0031099:+32232 Msa1445420:three_prime_UTR
GAGTCTGGCCATAGCTAGGC+TGG 0.448899 tig0031099:-32022 None:intergenic
ATAGATGTTGCTATCAAAAT+GGG 0.453719 tig0031099:-32227 None:intergenic
GTTGACTTCCATAGGCCGCT+TGG 0.454305 tig0031099:-31767 None:intergenic
AGCCCAGCTAGACGGTGGTC+GGG 0.454864 tig0031099:-31163 None:intergenic
CCATAACCAGCTTGTTGTGC+AGG 0.455611 tig0031099:-31198 None:intergenic
TTGACTTCCATAGGCCGCTT+GGG 0.461597 tig0031099:-31766 None:intergenic
AGCTAGACGGTGGTCGGGAT+TGG 0.461750 tig0031099:-31158 None:intergenic
AATTGAATCAGCAAAGCAAT+TGG 0.464801 tig0031099:+30073 Msa1445420:CDS
AAGTATCTTCAGATGCAATC+TGG 0.464861 tig0031099:+28505 Msa1445420:CDS
GTCCTCCACAGCCAGCTGAT+GGG 0.465554 tig0031099:+31424 Msa1445420:CDS
AGAACACCAACCCTACCATT+AGG 0.466222 tig0031099:-28457 None:intergenic
AGAAGGCGGGGCCTGGCTAG+AGG 0.466470 tig0031099:-31913 None:intergenic
TCCTGACCATAACCCTGTCC+AGG 0.466770 tig0031099:-31492 None:intergenic
TACAGTCAACCTCCTTCCTC+TGG 0.467231 tig0031099:+31459 Msa1445420:CDS
GATAACGGTGCTCCACAATC+GGG 0.467332 tig0031099:+28358 Msa1445420:CDS
GTTGGAAGTGTGCCCCTCTT+GGG 0.469268 tig0031099:-31628 None:intergenic
TTGCTGATTCAATTTGATCA+GGG 0.472599 tig0031099:-30064 None:intergenic
TCGCAGCAAGGTGGTAGTTA+TGG 0.474269 tig0031099:+28412 Msa1445420:CDS
AAGAAGATTGAAATACCTAA+TGG 0.476293 tig0031099:+28442 Msa1445420:CDS
GACCCATCAGCTGGCTGTGG+AGG 0.477036 tig0031099:-31426 None:intergenic
GAAGTGTGCCCCTCTTGGGT+TGG 0.479594 tig0031099:-31624 None:intergenic
TTATGGTGCTAGTTATGCTC+AGG 0.481239 tig0031099:+32067 Msa1445420:CDS
GAAGGCGGGGCCTGGCTAGA+GGG 0.486048 tig0031099:-31912 None:intergenic
GGGTATGGTCCGCAATCATA+TGG 0.486408 tig0031099:+31984 Msa1445420:CDS
GGTTATGGCTATGGGCAACC+TGG 0.488138 tig0031099:+31213 Msa1445420:CDS
CCTAGCCCAGCAGGAGGCTA+TGG 0.490924 tig0031099:+31876 Msa1445420:CDS
AAGAGTATGCAAGCTTCTAC+CGG 0.492893 tig0031099:+29795 Msa1445420:CDS
GCTGAGCATATCCAGAAGGC+GGG 0.493910 tig0031099:-31926 None:intergenic
ACCTGGACAGGGTTATGGTC+AGG 0.497241 tig0031099:+31491 Msa1445420:CDS
CTTCTGGCGGTGGCACTAGA+CGG 0.497957 tig0031099:+29585 Msa1445420:CDS
GATGGACCAGAGTATGATCC+AGG 0.501151 tig0031099:-31231 None:intergenic
TCACAGTCACCTAGCCCAGC+AGG 0.505105 tig0031099:+31867 Msa1445420:CDS
TTCTGTTGATGTATCACCTG+GGG 0.507849 tig0031099:-30018 None:intergenic
CCCAGCAACAGCAAAATCCT+GGG 0.508607 tig0031099:+31400 Msa1445420:CDS
GTTGGTAGCATAGCCTTGCT+GGG 0.508853 tig0031099:-31700 None:intergenic
CTGCTCCCAGTTATGGCAGT+GGG 0.512052 tig0031099:+31595 Msa1445420:CDS
GTTGCACCAAATTCTGCAAA+TGG 0.512812 tig0031099:-33296 None:intergenic
TTGAGGAGTTTCTTGTTGGT+TGG 0.513013 tig0031099:-31718 None:intergenic
TATGGAAGTCAACCACAGTC+TGG 0.513429 tig0031099:+31777 Msa1445420:CDS
CACGATGTGCTACTGAGACT+TGG 0.516654 tig0031099:-28087 None:intergenic
TGCTGATTCAATTTGATCAG+GGG 0.517465 tig0031099:-30063 None:intergenic
ATCTGCTTGTGATCCATAGT+TGG 0.518728 tig0031099:-31646 None:intergenic
CTTGGTTCGTTTGGGATCGT+AGG 0.519590 tig0031099:-28332 None:intergenic
GAAATACCTAATGGTAGGGT+TGG 0.520361 tig0031099:+28451 Msa1445420:CDS
GTTGGCCTTATAATCGGTAA+AGG 0.521991 tig0031099:+29759 Msa1445420:CDS
GCTCTCTGAGTGCCTAACTC+TGG 0.522190 tig0031099:-31948 None:intergenic
CCAGTTGGCGGAATATCCAC+CGG 0.522965 tig0031099:-31307 None:intergenic
CAAGGTGGCCAGCCTAGCTA+TGG 0.524469 tig0031099:+32014 Msa1445420:CDS
TCAGCAGAAGAAACAGCGTC+AGG 0.524572 tig0031099:-28604 None:intergenic
ATAGGCCGCTTGGGAGGTAG+GGG 0.527994 tig0031099:-31757 None:intergenic
GCCTTGCTGGGCAACAGTAG+TGG 0.528254 tig0031099:-31688 None:intergenic
GCACCAGTGCAACCAGGGTA+TGG 0.529757 tig0031099:+31969 Msa1445420:CDS
AGTTCGATGTCCGTGGCGGT+GGG 0.530955 tig0031099:-28232 None:intergenic
ATCCCGACCACCGTCTAGCT+GGG 0.531596 tig0031099:+31161 Msa1445420:CDS
AACAAGCTGGTTATGGCTAT+GGG 0.531625 tig0031099:+31205 Msa1445420:CDS
AGTCGATTGGTCCCAGTTGG+CGG 0.531961 tig0031099:-31319 None:intergenic
TATCCACCGGGTTGCTGAGG+AGG 0.532429 tig0031099:-31294 None:intergenic
TCCTCTGGTTATAGGCAACC+TGG 0.532856 tig0031099:+31474 Msa1445420:CDS
GTCAGCATATCCCTCTAGCC+AGG 0.533284 tig0031099:+31902 Msa1445420:CDS
GAGCCCAGCTAGACGGTGGT+CGG 0.534258 tig0031099:-31164 None:intergenic
GGTGGAGTCTGGCCATAGCT+AGG 0.535763 tig0031099:-32026 None:intergenic
GGTGTTCTTATTGGTAAAGG+AGG 0.535918 tig0031099:+28472 Msa1445420:CDS
GCAGACCCATCAGCTGGCTG+TGG 0.536196 tig0031099:-31429 None:intergenic
GCTGAAGCTGGGGCTTCTGG+CGG 0.536744 tig0031099:+29572 Msa1445420:CDS
GGATATGCTCAGCCAGAGTT+AGG 0.536855 tig0031099:+31936 Msa1445420:CDS
GCAGGAGGAGCCCAGCTAGA+CGG 0.538714 tig0031099:-31171 None:intergenic
TTATTAACTAGGCTGAAGCT+GGG 0.541792 tig0031099:+29561 Msa1445420:intron
GCTGCTCCTGCACAACAAGC+TGG 0.542982 tig0031099:+31192 Msa1445420:CDS
TCTGCTCCCAGTTATGGCAG+TGG 0.543356 tig0031099:+31594 Msa1445420:CDS
ATGCCTCAGCCACCATATGC+AGG 0.544233 tig0031099:+31267 Msa1445420:CDS
AGAGTATGCAAGCTTCTACC+GGG 0.546430 tig0031099:+29796 Msa1445420:CDS
GCTGGGCAACAGTAGTGGGT+TGG 0.546458 tig0031099:-31683 None:intergenic
GCTCGTCTTCTCAGCGTCAC+CGG 0.548114 tig0031099:+28295 Msa1445420:CDS
TTTCTGTTGATGTATCACCT+GGG 0.548846 tig0031099:-30019 None:intergenic
CTGATCCTAATTCTCAGACT+AGG 0.549418 tig0031099:+28560 Msa1445420:CDS
TGAGGAGGATAGCCTGCATA+TGG 0.549695 tig0031099:-31279 None:intergenic
CAGAGAGCACCAGTGCAACC+AGG 0.550434 tig0031099:+31963 Msa1445420:CDS
TAAGCAGGTGGATTTGCACT+TGG 0.550457 tig0031099:-31837 None:intergenic
TAGCGATGGAGCAACTGCAC+AGG 0.553254 tig0031099:+32103 Msa1445420:CDS
AACACGGTGTGGGAAGGAGT+TGG 0.553845 tig0031099:-28125 None:intergenic
TAGCCTGCATATGGTGGCTG+AGG 0.553849 tig0031099:-31270 None:intergenic
GGACCATACCCTGGTTGCAC+TGG 0.555058 tig0031099:-31972 None:intergenic
GGCTATCCTCCTCAGCAACC+CGG 0.555442 tig0031099:+31288 Msa1445420:CDS
AGTGGGTTGGGAAGTTTGGG+AGG 0.555622 tig0031099:-31670 None:intergenic
AGATTGAAATACCTAATGGT+AGG 0.556097 tig0031099:+28446 Msa1445420:CDS
AAACGAACCAAGTCCGATAA+CGG 0.556846 tig0031099:+28343 Msa1445420:CDS
TTGGTTAATCAAATCCTCAC+TGG 0.558998 tig0031099:+30092 Msa1445420:CDS
CCACAGTCTGGTTATGGACC+TGG 0.560474 tig0031099:+31789 Msa1445420:CDS
GCGCAACAACAATCTGGGTA+TGG 0.561377 tig0031099:+31534 Msa1445420:CDS
CGGTGGATATTCCGCCAACT+GGG 0.563001 tig0031099:+31308 Msa1445420:CDS
GAGGGAGGAGCACCATAACC+AGG 0.563328 tig0031099:-31807 None:intergenic
CTCAGAAATTCAGGGAACTC+AGG 0.566464 tig0031099:+31114 Msa1445420:CDS
GCTCCATCGCTAGCATACGC+TGG 0.567046 tig0031099:-32092 None:intergenic
CTGTATGCAGACCCATCAGC+TGG 0.570591 tig0031099:-31435 None:intergenic
CTTAACAGTACTGAGAGATA+CGG 0.570905 tig0031099:+33207 Msa1445420:intron
CACTTGCATGAGTAGACTGC+TGG 0.572808 tig0031099:-31353 None:intergenic
TAAGAATCAAACCCCGATTG+TGG 0.574402 tig0031099:-28370 None:intergenic
TAGCTAGGCTGGCCACCTTG+AGG 0.574664 tig0031099:-32011 None:intergenic
GTAGGAGAGTGGTGGAGCGC+CGG 0.574920 tig0031099:-28314 None:intergenic
CCTTGCTGGGCAACAGTAGT+GGG 0.574987 tig0031099:-31687 None:intergenic
AGAATCGTCTCAGAAATTCA+GGG 0.575702 tig0031099:+31106 Msa1445420:intron
GGGAGTAATCCAACCCAAGA+GGG 0.576300 tig0031099:+31615 Msa1445420:CDS
ACTGACCATAGCCTCCTGCT+GGG 0.577432 tig0031099:-31881 None:intergenic
GGCTGAGCATATCCAGAAGG+CGG 0.579823 tig0031099:-31927 None:intergenic
GCTCCAGCGTATGCTAGCGA+TGG 0.580238 tig0031099:+32089 Msa1445420:CDS
GGCATGTTATACTGCGGTGA+TGG 0.581623 tig0031099:-31249 None:intergenic
CAATCATATGGTGCTCCTCA+AGG 0.582124 tig0031099:+31996 Msa1445420:CDS
GAATATCCACCGGGTTGCTG+AGG 0.583120 tig0031099:-31297 None:intergenic
TGAGTAGACTGCTGGTGAGA+TGG 0.584276 tig0031099:-31345 None:intergenic
GCTACCCCATAACCTGGTTG+AGG 0.585519 tig0031099:-31735 None:intergenic
GATTGAAATACCTAATGGTA+GGG 0.585821 tig0031099:+28447 Msa1445420:CDS
AGCAGTCGATTGGTCCCAGT+TGG 0.586343 tig0031099:-31322 None:intergenic
TGCAGAATTTGGTGCAACCG+TGG 0.587337 tig0031099:+33301 Msa1445420:three_prime_UTR
GGGCAACCTGGATCATACTC+TGG 0.588895 tig0031099:+31225 Msa1445420:CDS
ACCAAATTCTGCAAATGGCA+TGG 0.589272 tig0031099:-33291 None:intergenic
TGGCGGTGGCACTAGACGGA+TGG 0.589779 tig0031099:+29589 Msa1445420:CDS
CCCACTACTGTTGCCCAGCA+AGG 0.593544 tig0031099:+31687 Msa1445420:CDS
GGTTATAGGCAACCTGGACA+GGG 0.595134 tig0031099:+31480 Msa1445420:CDS
TTACTCCCACTGCCATAACT+GGG 0.595665 tig0031099:-31600 None:intergenic
AACTCCTCAACCAGGTTATG+GGG 0.596098 tig0031099:+31731 Msa1445420:CDS
ATAATGCGCAACAACAATCT+GGG 0.598425 tig0031099:+31529 Msa1445420:CDS
CGTTTGGGATCGTAGGAGAG+TGG 0.599323 tig0031099:-28325 None:intergenic
ACGGATGGTTGCACAATCTG+GGG 0.600123 tig0031099:+29604 Msa1445420:CDS
TAGTAAGTAAAACAGTCCCT+AGG 0.602675 tig0031099:+32362 Msa1445420:three_prime_UTR
AGTGAAAACACGGTGTGGGA+AGG 0.605750 tig0031099:-28131 None:intergenic
TGTTGTGCAGGAGCAGCAGG+AGG 0.605854 tig0031099:-31186 None:intergenic
GACTGTGATTGACCATAAGC+AGG 0.606917 tig0031099:-31852 None:intergenic
GAAAACCTGAATTCGTGCCC+CGG 0.608473 tig0031099:-29814 None:intergenic
TCCTAATTCTCAGACTAGGA+TGG 0.609354 tig0031099:+28564 Msa1445420:CDS
CAGTTGGCGGAATATCCACC+GGG 0.609806 tig0031099:-31306 None:intergenic
GGTGAGATGGAGCAGTCGAT+TGG 0.609946 tig0031099:-31332 None:intergenic
CCACCTTGCTGCGAGTATTG+CGG 0.611213 tig0031099:-28403 None:intergenic
GAGTATGCAAGCTTCTACCG+GGG 0.611864 tig0031099:+29797 Msa1445420:CDS
TAAGAACTATTTCCATATGA+CGG 0.615919 tig0031099:-32047 None:intergenic
CATCAATGAAGTCCTTGCTG+AGG 0.616712 tig0031099:+28633 Msa1445420:CDS
GGTTATGGTCAGGAAAGCTA+TGG 0.616846 tig0031099:+31501 Msa1445420:CDS
TTGGGATCGTAGGAGAGTGG+TGG 0.618282 tig0031099:-28322 None:intergenic
GTAGGGGCTACCCCATAACC+TGG 0.621045 tig0031099:-31741 None:intergenic
AGAAAGTGAAAACACGGTGT+GGG 0.622964 tig0031099:-28135 None:intergenic
CAGCAGTCTACTCATGCAAG+TGG 0.623206 tig0031099:+31354 Msa1445420:CDS
GGAGGAGCCCAGCTAGACGG+TGG 0.623688 tig0031099:-31168 None:intergenic
AGACTGTGGTTGACTTCCAT+AGG 0.624998 tig0031099:-31775 None:intergenic
TAATCAAATCCTCACTGGTG+AGG 0.625790 tig0031099:+30097 Msa1445420:CDS
TCTGTTGATGTATCACCTGG+GGG 0.627155 tig0031099:-30017 None:intergenic
ACTTCCATAGGCCGCTTGGG+AGG 0.629551 tig0031099:-31763 None:intergenic
GGAGGATAGCCTGCATATGG+TGG 0.632205 tig0031099:-31276 None:intergenic
TATAGGGTTTGTTTCAATGG+CGG 0.632326 tig0031099:+28165 Msa1445420:exon
TATGATTGCGGACCATACCC+TGG 0.632611 tig0031099:-31981 None:intergenic
TTGAAACAAACCCTATAGAG+AGG 0.634104 tig0031099:-28159 None:intergenic
GGCCTTATAATCGGTAAAGG+AGG 0.635849 tig0031099:+29762 Msa1445420:CDS
GACTTCGAGTTCGATGTCCG+TGG 0.636506 tig0031099:-28239 None:intergenic
TCAGGTGGTTATACTCAGCA+AGG 0.636998 tig0031099:+31132 Msa1445420:CDS
CAACAAGAAACTCCTCAACC+AGG 0.638274 tig0031099:+31723 Msa1445420:CDS
CAAACATATGATCAGCAACA+AGG 0.642194 tig0031099:+31564 Msa1445420:CDS
TATTAACTAGGCTGAAGCTG+GGG 0.642830 tig0031099:+29562 Msa1445420:intron
CGATGAACAACCCACCGCCA+CGG 0.645490 tig0031099:+28222 Msa1445420:CDS
AAGAAAGTGAAAACACGGTG+TGG 0.646849 tig0031099:-28136 None:intergenic
AAGCCGCAATACTCGCAGCA+AGG 0.647111 tig0031099:+28400 Msa1445420:CDS
GATGTTGCTATCAAAATGGG+AGG 0.647415 tig0031099:-32224 None:intergenic
GGTTGCCTATAACCAGAGGA+AGG 0.649293 tig0031099:-31471 None:intergenic
AGAGAGCACCAGTGCAACCA+GGG 0.650050 tig0031099:+31964 Msa1445420:CDS
ACTGCACAGGCTGTTCCACA+GGG 0.651647 tig0031099:+32116 Msa1445420:CDS
CTGAGCATATCCAGAAGGCG+GGG 0.654248 tig0031099:-31925 None:intergenic
TCCAGGTTGCCTATAACCAG+AGG 0.654374 tig0031099:-31475 None:intergenic
TCTGGCTGAGCATATCCAGA+AGG 0.655491 tig0031099:-31930 None:intergenic
AAATTAAAACCACATCCCAA+AGG 0.657609 tig0031099:-32197 None:intergenic
AGAAATTCAGGGAACTCAGG+TGG 0.665666 tig0031099:+31117 Msa1445420:CDS
TGCCTATAACCAGAGGAAGG+AGG 0.666033 tig0031099:-31468 None:intergenic
CGGATGGTTGCACAATCTGG+GGG 0.666739 tig0031099:+29605 Msa1445420:CDS
CCAGCAACAGCAAAATCCTG+GGG 0.670269 tig0031099:+31401 Msa1445420:CDS
AGAGGAAGAAAGTGAAAACA+CGG 0.674928 tig0031099:-28141 None:intergenic
TGAGGAGCACCATATGATTG+CGG 0.676376 tig0031099:-31993 None:intergenic
TTCGAGTTCGATGTCCGTGG+CGG 0.677834 tig0031099:-28236 None:intergenic
CAGTCACCTAGCCCAGCAGG+AGG 0.679822 tig0031099:+31870 Msa1445420:CDS
TGGGAGTAATCCAACCCAAG+AGG 0.681350 tig0031099:+31614 Msa1445420:CDS
ATAACGGTGCTCCACAATCG+GGG 0.686584 tig0031099:+28359 Msa1445420:CDS
GGAGTAATCCAACCCAAGAG+GGG 0.687207 tig0031099:+31616 Msa1445420:CDS
CCGCAATACTCGCAGCAAGG+TGG 0.697265 tig0031099:+28403 Msa1445420:CDS
ACTTTAGCAACACTGCCCTG+TGG 0.699397 tig0031099:-32131 None:intergenic
TCATATGGTGCTCCTCAAGG+TGG 0.706407 tig0031099:+31999 Msa1445420:CDS
GAACTATTTCCATATGACGG+TGG 0.711749 tig0031099:-32044 None:intergenic
TGTGATTGACCATAAGCAGG+TGG 0.719303 tig0031099:-31849 None:intergenic
TATCCTCCTCAGCAACCCGG+TGG 0.720805 tig0031099:+31291 Msa1445420:CDS
GGTGACGCTGAGAAGACGAG+CGG 0.728767 tig0031099:-28293 None:intergenic
CCAGGTCCATAACCAGACTG+TGG 0.734270 tig0031099:-31789 None:intergenic
CAGCAACAGCAAAATCCTGG+GGG 0.736266 tig0031099:+31402 Msa1445420:CDS
GGTAGCCCCTACCTCCCAAG+CGG 0.739424 tig0031099:+31752 Msa1445420:CDS
GGCTGAGGCATGTTATACTG+CGG 0.750903 tig0031099:-31255 None:intergenic
GATAACATACCTCACCAGTG+AGG 0.751081 tig0031099:-30106 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAATTATGACTAATTTTTAT+TGG + tig0031099:30954-30973 Msa1445420:intron 10.0%
!!! TTTTTTTATACTCTTGTTTA+CGG + tig0031099:28660-28679 Msa1445420:intron 15.0%
!! ATATTGGTAAAAAGTTAAAA+CGG - tig0031099:29964-29983 None:intergenic 15.0%
!!! AATTTTAAACTTAAGAGATT+TGG - tig0031099:30180-30199 None:intergenic 15.0%
!!! ATCTCTTAAGTTTAAAATTA+TGG + tig0031099:30181-30200 Msa1445420:intron 15.0%
!!! TCTCTTAAGTTTAAAATTAT+GGG + tig0031099:30182-30201 Msa1445420:intron 15.0%
!!! TTATAATCATGTTTAGTTTT+AGG + tig0031099:30206-30225 Msa1445420:intron 15.0%
!! ACAATTACCTTATAAAATTA+TGG + tig0031099:30251-30270 Msa1445420:intron 15.0%
!!! AAATGAATAACAATTTTGTA+GGG - tig0031099:30293-30312 None:intergenic 15.0%
!!! AAAATGAATAACAATTTTGT+AGG - tig0031099:30294-30313 None:intergenic 15.0%
!! TTAAAATATTTCTTATCGTT+GGG + tig0031099:30610-30629 Msa1445420:intron 15.0%
!!! TTTTTTCAAGAAAAATATCA+AGG + tig0031099:32762-32781 Msa1445420:intron 15.0%
!! TAATCAATGATATTTCACTA+AGG - tig0031099:28854-28873 None:intergenic 20.0%
!!! TGAAATACATTTTTACTAAC+AGG - tig0031099:29347-29366 None:intergenic 20.0%
!! TATATTATAGTTACAGAATC+AGG - tig0031099:29455-29474 None:intergenic 20.0%
!! AAAGAACATTAAAAATCGAT+GGG + tig0031099:30039-30058 Msa1445420:CDS 20.0%
!!! ACACAATTTTTTGTTTTATC+TGG + tig0031099:30130-30149 Msa1445420:intron 20.0%
!!! AAAAGGTCCATAATTTTATA+AGG - tig0031099:30261-30280 None:intergenic 20.0%
!! CTTAAAATATTTCTTATCGT+TGG + tig0031099:30609-30628 Msa1445420:intron 20.0%
!!! AAAGTCACTTTCAATTATAA+TGG + tig0031099:30733-30752 Msa1445420:intron 20.0%
!!! CTTCGTATATTTTTATGTTT+TGG + tig0031099:31035-31054 Msa1445420:intron 20.0%
!!! AGTTGATTTTTCTTTTGTAA+TGG + tig0031099:32164-32183 Msa1445420:exon 20.0%
!! GGAGAAAAAGATTATATAAA+AGG + tig0031099:32459-32478 Msa1445420:intron 20.0%
!!! TGTGTTTTTAAAAATGAAAG+TGG + tig0031099:32520-32539 Msa1445420:intron 20.0%
!!! CATTTTTTCTACAATCTATA+TGG + tig0031099:33158-33177 Msa1445420:intron 20.0%
! AAGAAGATTGAAATACCTAA+TGG + tig0031099:28442-28461 Msa1445420:CDS 25.0%
! TAAAAAAAAAAACCTCAGCA+AGG - tig0031099:28648-28667 None:intergenic 25.0%
! GTGATTTCAAAACATGAATT+GGG - tig0031099:28820-28839 None:intergenic 25.0%
! TACTCAAATGATGTTCAAAT+TGG + tig0031099:28965-28984 Msa1445420:intron 25.0%
! TAAATATGCTCAAATGATGT+TGG + tig0031099:29489-29508 Msa1445420:intron 25.0%
!!! ATACGTGTTGTTTATTAACT+AGG + tig0031099:29550-29569 Msa1445420:intron 25.0%
!!! TGTTTTGTTTATTCTCGTTT+GGG + tig0031099:29707-29726 Msa1445420:intron 25.0%
! GAAAGAACATTAAAAATCGA+TGG + tig0031099:30038-30057 Msa1445420:CDS 25.0%
!!! TTTATCTGGCTTATCATTTT+TGG + tig0031099:30144-30163 Msa1445420:intron 25.0%
! TCAACAAGTCAAAATTCAAA+AGG - tig0031099:30441-30460 None:intergenic 25.0%
!!! ATTTCATAGTTTGTTTAAGC+TGG + tig0031099:30784-30803 Msa1445420:intron 25.0%
!! CTAATTTTTATTGGCATCAA+TGG + tig0031099:30963-30982 Msa1445420:intron 25.0%
! AATAGATGTACACATATAAC+GGG - tig0031099:31014-31033 None:intergenic 25.0%
! CAATAGATGTACACATATAA+CGG - tig0031099:31015-31034 None:intergenic 25.0%
!!! ATTTTTATGTTTTGGTACGT+TGG + tig0031099:31043-31062 Msa1445420:intron 25.0%
!!! TTTTTATGTTTTGGTACGTT+GGG + tig0031099:31044-31063 Msa1445420:intron 25.0%
! TAAGAACTATTTCCATATGA+CGG - tig0031099:32050-32069 None:intergenic 25.0%
! TCATATGGAAATAGTTCTTA+TGG + tig0031099:32050-32069 Msa1445420:CDS 25.0%
! CAAAAGAAAAATCAACTCTT+GGG - tig0031099:32161-32180 None:intergenic 25.0%
! ACAAAAGAAAAATCAACTCT+TGG - tig0031099:32162-32181 None:intergenic 25.0%
! ATAGATGTTGCTATCAAAAT+GGG - tig0031099:32230-32249 None:intergenic 25.0%
!!! TTATTTTCTACTGCTGTTTT+CGG + tig0031099:32281-32300 Msa1445420:three_prime_UTR 25.0%
!!! TCTGATTGTGTTTTTTCATT+TGG + tig0031099:32586-32605 Msa1445420:intron 25.0%
! TGCAACAAATCAAAAAAAGT+TGG + tig0031099:32687-32706 Msa1445420:intron 25.0%
! TTCATCTGATAAAACTTCAT+TGG - tig0031099:32713-32732 None:intergenic 25.0%
!!! AATGAAGTTTTATCAGATGA+AGG + tig0031099:32712-32731 Msa1445420:intron 25.0%
! TAATGATGTCTATTGTTCTT+AGG + tig0031099:32926-32945 Msa1445420:intron 25.0%
! TTGTAGAAAAAATGACCTAA+AGG - tig0031099:33152-33171 None:intergenic 25.0%
!!! TTCTTTTGAAATGAGAGATA+CGG - tig0031099:33241-33260 None:intergenic 25.0%
AGATTGAAATACCTAATGGT+AGG + tig0031099:28446-28465 Msa1445420:CDS 30.0%
GATTGAAATACCTAATGGTA+GGG + tig0031099:28447-28466 Msa1445420:CDS 30.0%
TACTGTAATTCTTACTAGTC+AGG + tig0031099:28715-28734 Msa1445420:intron 30.0%
ACTGTAATTCTTACTAGTCA+GGG + tig0031099:28716-28735 Msa1445420:intron 30.0%
GGTGATTTCAAAACATGAAT+TGG - tig0031099:28821-28840 None:intergenic 30.0%
TTTCACTAAGGTAACAGTTA+CGG - tig0031099:28842-28861 None:intergenic 30.0%
! CTGATTTGATAACTGTTGTA+TGG + tig0031099:28887-28906 Msa1445420:intron 30.0%
CTCAAATGATGTTTCAATGA+CGG + tig0031099:29063-29082 Msa1445420:intron 30.0%
TCTAATCTTGCACAATTTCA+TGG + tig0031099:29181-29200 Msa1445420:intron 30.0%
TTGGTGAAACATTCACTAAT+AGG + tig0031099:29236-29255 Msa1445420:intron 30.0%
GATGCAAATACCAAACAATA+AGG + tig0031099:29640-29659 Msa1445420:CDS 30.0%
AAATACCAAACAATAAGGTG+TGG + tig0031099:29645-29664 Msa1445420:intron 30.0%
AATACCAAACAATAAGGTGT+GGG + tig0031099:29646-29665 Msa1445420:intron 30.0%
!!! GTGTTTTGTTTATTCTCGTT+TGG + tig0031099:29706-29725 Msa1445420:intron 30.0%
GGTAAAAAGTTAAAACGGAT+AGG - tig0031099:29959-29978 None:intergenic 30.0%
CCTGAAAAAATTGACGATAT+TGG - tig0031099:29980-29999 None:intergenic 30.0%
!!! CCAATATCGTCAATTTTTTC+AGG + tig0031099:29977-29996 Msa1445420:intron 30.0%
!! TTGCTGATTCAATTTGATCA+GGG - tig0031099:30067-30086 None:intergenic 30.0%
!! TTTGCTGATTCAATTTGATC+AGG - tig0031099:30068-30087 None:intergenic 30.0%
AATTGAATCAGCAAAGCAAT+TGG + tig0031099:30073-30092 Msa1445420:CDS 30.0%
! CTCCACCTTTTGTAAAAATA+AGG + tig0031099:30319-30338 Msa1445420:intron 30.0%
!!! CACCTTATTTTTACAAAAGG+TGG - tig0031099:30324-30343 None:intergenic 30.0%
!!! GAGCACCTTATTTTTACAAA+AGG - tig0031099:30327-30346 None:intergenic 30.0%
TGAGTTATCATGGTTTCATT+TGG - tig0031099:30378-30397 None:intergenic 30.0%
!!! CAAAGTGCTGTCTAATTTTA+TGG - tig0031099:30477-30496 None:intergenic 30.0%
TCATATGCTCAACTTTCATT+CGG + tig0031099:30633-30652 Msa1445420:intron 30.0%
!!! ATTCGGTTTAGTTTTATCCT+TGG + tig0031099:30650-30669 Msa1445420:intron 30.0%
!!! TTCGGTTTAGTTTTATCCTT+GGG + tig0031099:30651-30670 Msa1445420:intron 30.0%
ATTGAAAGTGACTTTAACGT+AGG - tig0031099:30728-30747 None:intergenic 30.0%
AGGATTGTTTCAATGTACTT+GGG + tig0031099:30837-30856 Msa1445420:intron 30.0%
TAATGGTTATTATCGTCCTT+TGG + tig0031099:32181-32200 Msa1445420:three_prime_UTR 30.0%
AATGGTTATTATCGTCCTTT+GGG + tig0031099:32182-32201 Msa1445420:three_prime_UTR 30.0%
AAATTAAAACCACATCCCAA+AGG - tig0031099:32200-32219 None:intergenic 30.0%
CATAGATGTTGCTATCAAAA+TGG - tig0031099:32231-32250 None:intergenic 30.0%
! TTTGATAGCAACATCTATGT+TGG + tig0031099:32232-32251 Msa1445420:three_prime_UTR 30.0%
AAAAACACAGTCATAAACAG+AGG - tig0031099:32509-32528 None:intergenic 30.0%
! CTCAACTTTAGTTCATGATT+GGG - tig0031099:32656-32675 None:intergenic 30.0%
! ACTCAACTTTAGTTCATGAT+TGG - tig0031099:32657-32676 None:intergenic 30.0%
!!! CTTTTTTTGATTTGTTGCAG+CGG - tig0031099:32686-32705 None:intergenic 30.0%
AAGAAAAATATCAAGGAGTG+TGG + tig0031099:32769-32788 Msa1445420:intron 30.0%
! AGAAAAATATCAAGGAGTGT+GGG + tig0031099:32770-32789 Msa1445420:intron 30.0%
ACAATAGACATCATTACCTA+GGG - tig0031099:32922-32941 None:intergenic 30.0%
AACAATAGACATCATTACCT+AGG - tig0031099:32923-32942 None:intergenic 30.0%
! TGTTGTCTTCTCTAATTTTC+TGG + tig0031099:33100-33119 Msa1445420:intron 30.0%
AAATGACCTAAAGGTGAAAA+TGG - tig0031099:33143-33162 None:intergenic 30.0%
ACCGTGGAATAAATGTTAAA+AGG + tig0031099:33317-33336 Msa1445420:three_prime_UTR 30.0%
! GCCTTTTAACATTTATTCCA+CGG - tig0031099:33321-33340 None:intergenic 30.0%
AGAGGAAGAAAGTGAAAACA+CGG - tig0031099:28144-28163 None:intergenic 35.0%
TTCACTTTCTTCCTCTCTAT+AGG + tig0031099:28148-28167 Msa1445420:five_prime_UTR 35.0%
TCACTTTCTTCCTCTCTATA+GGG + tig0031099:28149-28168 Msa1445420:five_prime_UTR 35.0%
TTGAAACAAACCCTATAGAG+AGG - tig0031099:28162-28181 None:intergenic 35.0%
! CTCTATAGGGTTTGTTTCAA+TGG + tig0031099:28162-28181 Msa1445420:exon 35.0%
! TATAGGGTTTGTTTCAATGG+CGG + tig0031099:28165-28184 Msa1445420:exon 35.0%
! TTCATCGTACTTGCGTTTTA+GGG - tig0031099:28209-28228 None:intergenic 35.0%
! GTTGGTGTTCTTATTGGTAA+AGG + tig0031099:28469-28488 Msa1445420:CDS 35.0%
AAGTATCTTCAGATGCAATC+TGG + tig0031099:28505-28524 Msa1445420:CDS 35.0%
! GATTCAAGTTACTCGTGATA+TGG + tig0031099:28534-28553 Msa1445420:CDS 35.0%
ACTAGGATGGTTGAACTTAT+GGG + tig0031099:28577-28596 Msa1445420:CDS 35.0%
CTGTTGTATGGAGTTTCAAT+AGG + tig0031099:28899-28918 Msa1445420:intron 35.0%
CAGTCAGATACAACAAAATC+AGG - tig0031099:29002-29021 None:intergenic 35.0%
TGATGTTTCAATGACGGTAA+AGG + tig0031099:29069-29088 Msa1445420:intron 35.0%
ATGACTGTAACTTTACCTCT+TGG + tig0031099:29217-29236 Msa1445420:intron 35.0%
TTAGTGAATGTTTCACCAAG+AGG - tig0031099:29235-29254 None:intergenic 35.0%
AAAACACCTCTTATCAGTGA+TGG - tig0031099:29430-29449 None:intergenic 35.0%
TGCTCAAATGATGTTGGAAT+TGG + tig0031099:29495-29514 Msa1445420:intron 35.0%
TTTATTAACTAGGCTGAAGC+TGG + tig0031099:29560-29579 Msa1445420:intron 35.0%
TTATTAACTAGGCTGAAGCT+GGG + tig0031099:29561-29580 Msa1445420:intron 35.0%
ATACCAAACAATAAGGTGTG+GGG + tig0031099:29647-29666 Msa1445420:intron 35.0%
GGTTTCTTGTGTGAATCTTT+AGG + tig0031099:29737-29756 Msa1445420:intron 35.0%
TCTTGTGTGAATCTTTAGGT+TGG + tig0031099:29741-29760 Msa1445420:intron 35.0%
!! CTTTAGGTTGGCCTTATAAT+CGG + tig0031099:29753-29772 Msa1445420:intron 35.0%
TTTCTGTTGATGTATCACCT+GGG - tig0031099:30022-30041 None:intergenic 35.0%
!! TGCTGATTCAATTTGATCAG+GGG - tig0031099:30066-30085 None:intergenic 35.0%
TTGGTTAATCAAATCCTCAC+TGG + tig0031099:30092-30111 Msa1445420:CDS 35.0%
!!! TCTGGCTTATCATTTTTGGT+TGG + tig0031099:30148-30167 Msa1445420:intron 35.0%
TTGTAGGGACTAAAGTCAAA+AGG - tig0031099:30278-30297 None:intergenic 35.0%
!! AGGTGCTCATATTTTTACAG+TGG + tig0031099:30339-30358 Msa1445420:intron 35.0%
CAAACAAAATCTAACAGCCA+GGG - tig0031099:30531-30550 None:intergenic 35.0%
TCAAACAAAATCTAACAGCC+AGG - tig0031099:30532-30551 None:intergenic 35.0%
AATCGACAGAAACACACAAA+TGG - tig0031099:30572-30591 None:intergenic 35.0%
GAGGATTGTTTCAATGTACT+TGG + tig0031099:30836-30855 Msa1445420:intron 35.0%
GGATTGTTTCAATGTACTTG+GGG + tig0031099:30838-30857 Msa1445420:intron 35.0%
TGAAGTACGGTCTGTATATT+TGG + tig0031099:30866-30885 Msa1445420:intron 35.0%
TTTCCCATACTTGCTCTTTA+GGG + tig0031099:30895-30914 Msa1445420:intron 35.0%
TATTGGCATCAATGGAAATG+AGG + tig0031099:30971-30990 Msa1445420:intron 35.0%
AGAATCGTCTCAGAAATTCA+GGG + tig0031099:31106-31125 Msa1445420:intron 35.0%
TATAATGCGCAACAACAATC+TGG + tig0031099:31528-31547 Msa1445420:CDS 35.0%
ATAATGCGCAACAACAATCT+GGG + tig0031099:31529-31548 Msa1445420:CDS 35.0%
TGTTGCTGATCATATGTTTG+TGG - tig0031099:31564-31583 None:intergenic 35.0%
CAAACATATGATCAGCAACA+AGG + tig0031099:31564-31583 Msa1445420:CDS 35.0%
TAGTAAGTAAAACAGTCCCT+AGG + tig0031099:32362-32381 Msa1445420:three_prime_UTR 35.0%
! GTTCAGTTTTACAAGCAAGA+AGG + tig0031099:32429-32448 Msa1445420:intron 35.0%
TTGCTTCTTTGAATTCCAAC+CGG - tig0031099:32623-32642 None:intergenic 35.0%
GGAATTCAAAGAAGCAAGAA+CGG + tig0031099:32626-32645 Msa1445420:intron 35.0%
AGATGAAGGTTGAATAGATG+AGG + tig0031099:32726-32745 Msa1445420:intron 35.0%
TAGTAAGTAAAACAGTCCCT+AGG + tig0031099:32362-32381 Msa1445420:three_prime_UTR 35.0%
! CTTAACAGTACTGAGAGATA+CGG + tig0031099:33207-33226 Msa1445420:intron 35.0%
AGAAAGTGAAAACACGGTGT+GGG - tig0031099:28138-28157 None:intergenic 40.0%
AAGAAAGTGAAAACACGGTG+TGG - tig0031099:28139-28158 None:intergenic 40.0%
! GTTCATCGTACTTGCGTTTT+AGG - tig0031099:28210-28229 None:intergenic 40.0%
AACTTCTTGAGCTCGTTGTT+TGG - tig0031099:28272-28291 None:intergenic 40.0%
! TTATCGGACTTGGTTCGTTT+GGG - tig0031099:28343-28362 None:intergenic 40.0%
AAACGAACCAAGTCCGATAA+CGG + tig0031099:28343-28362 Msa1445420:CDS 40.0%
TAAGAATCAAACCCCGATTG+TGG - tig0031099:28373-28392 None:intergenic 40.0%
GAAATACCTAATGGTAGGGT+TGG + tig0031099:28451-28470 Msa1445420:CDS 40.0%
GGTGTTCTTATTGGTAAAGG+AGG + tig0031099:28472-28491 Msa1445420:CDS 40.0%
CTGATCCTAATTCTCAGACT+AGG + tig0031099:28560-28579 Msa1445420:CDS 40.0%
TCCTAATTCTCAGACTAGGA+TGG + tig0031099:28564-28583 Msa1445420:CDS 40.0%
ACCATCCTAGTCTGAGAATT+AGG - tig0031099:28568-28587 None:intergenic 40.0%
GACTAGGATGGTTGAACTTA+TGG + tig0031099:28576-28595 Msa1445420:CDS 40.0%
TATTAACTAGGCTGAAGCTG+GGG + tig0031099:29562-29581 Msa1445420:intron 40.0%
GAGAAAATATATCCAGCTGC+AGG + tig0031099:29669-29688 Msa1445420:intron 40.0%
! TATTCTCGTTTGGGTTCATG+TGG + tig0031099:29716-29735 Msa1445420:intron 40.0%
!! GTTGGCCTTATAATCGGTAA+AGG + tig0031099:29759-29778 Msa1445420:CDS 40.0%
! CTCCTCCTTTACCGATTATA+AGG - tig0031099:29767-29786 None:intergenic 40.0%
! AAGAGTATGCAAGCTTCTAC+CGG + tig0031099:29795-29814 Msa1445420:CDS 40.0%
AAATCCAAGTCATGAGAGTC+GGG - tig0031099:29936-29955 None:intergenic 40.0%
GAAATCCAAGTCATGAGAGT+CGG - tig0031099:29937-29956 None:intergenic 40.0%
TTCTGTTGATGTATCACCTG+GGG - tig0031099:30021-30040 None:intergenic 40.0%
CTTTCTGTTGATGTATCACC+TGG - tig0031099:30023-30042 None:intergenic 40.0%
TAATCAAATCCTCACTGGTG+AGG + tig0031099:30097-30116 Msa1445420:CDS 40.0%
GAAACCATGATAACTCAGAC+TGG + tig0031099:30381-30400 Msa1445420:intron 40.0%
ATGTCTCTATTTATGTGCCC+TGG + tig0031099:30511-30530 Msa1445420:intron 40.0%
! TTTAAGCTGGCCTGTTAGAT+TGG + tig0031099:30797-30816 Msa1445420:intron 40.0%
! TTAAGCTGGCCTGTTAGATT+GGG + tig0031099:30798-30817 Msa1445420:intron 40.0%
GTTTCCCATACTTGCTCTTT+AGG + tig0031099:30894-30913 Msa1445420:intron 40.0%
ACTCCCTAAAGAGCAAGTAT+GGG - tig0031099:30901-30920 None:intergenic 40.0%
TACTCCCTAAAGAGCAAGTA+TGG - tig0031099:30902-30921 None:intergenic 40.0%
!!! GGGCGAGCATTTTTAATTTG+TGG + tig0031099:31064-31083 Msa1445420:intron 40.0%
CAGAATCGTCTCAGAAATTC+AGG + tig0031099:31105-31124 Msa1445420:intron 40.0%
AACAAGCTGGTTATGGCTAT+GGG + tig0031099:31205-31224 Msa1445420:CDS 40.0%
ATCTGCTTGTGATCCATAGT+TGG - tig0031099:31649-31668 None:intergenic 40.0%
TTGAGGAGTTTCTTGTTGGT+TGG - tig0031099:31721-31740 None:intergenic 40.0%
AAACTCCTCAACCAGGTTAT+GGG + tig0031099:31730-31749 Msa1445420:CDS 40.0%
!! TTTGCACTTGGCTTTTGAGA+GGG - tig0031099:31828-31847 None:intergenic 40.0%
!! ATTTGCACTTGGCTTTTGAG+AGG - tig0031099:31829-31848 None:intergenic 40.0%
GAACTATTTCCATATGACGG+TGG - tig0031099:32047-32066 None:intergenic 40.0%
! TTATGGTGCTAGTTATGCTC+AGG + tig0031099:32067-32086 Msa1445420:CDS 40.0%
!! TATTATCGTCCTTTGGGATG+TGG + tig0031099:32188-32207 Msa1445420:three_prime_UTR 40.0%
GATGTTGCTATCAAAATGGG+AGG - tig0031099:32227-32246 None:intergenic 40.0%
AGTAAAACAGTCCCTAGGTA+AGG + tig0031099:32367-32386 Msa1445420:intron 40.0%
TACAAGCAAGAAGGAGAAGA+AGG + tig0031099:32438-32457 Msa1445420:intron 40.0%
TCATTTGGTTGTGTTGTGTC+CGG + tig0031099:32601-32620 Msa1445420:intron 40.0%
GAATAGATGAGGTCAATGCT+TGG + tig0031099:32737-32756 Msa1445420:intron 40.0%
CAGTCTTACAAGCAAGCTTA+TGG + tig0031099:32996-33015 Msa1445420:intron 40.0%
TTACAAGCAAGCTTATGGCT+TGG + tig0031099:33001-33020 Msa1445420:intron 40.0%
! TCTCCACCATTTTCACCTTT+AGG + tig0031099:33134-33153 Msa1445420:intron 40.0%
TGACCTAAAGGTGAAAATGG+TGG - tig0031099:33140-33159 None:intergenic 40.0%
! TCCATGCCATTTGCAGAATT+TGG + tig0031099:33290-33309 Msa1445420:three_prime_UTR 40.0%
ACCAAATTCTGCAAATGGCA+TGG - tig0031099:33294-33313 None:intergenic 40.0%
GTTGCACCAAATTCTGCAAA+TGG - tig0031099:33299-33318 None:intergenic 40.0%
! GTTATCGGACTTGGTTCGTT+TGG - tig0031099:28344-28363 None:intergenic 45.0%
AGAACACCAACCCTACCATT+AGG - tig0031099:28460-28479 None:intergenic 45.0%
!! GGTAGGGTTGGTGTTCTTAT+TGG + tig0031099:28463-28482 Msa1445420:CDS 45.0%
CATCAATGAAGTCCTTGCTG+AGG + tig0031099:28633-28652 Msa1445420:CDS 45.0%
GTGCAACCATCACTGATAAG+AGG + tig0031099:29421-29440 Msa1445420:intron 45.0%
TCTCCCCACACCTTATTGTT+TGG - tig0031099:29653-29672 None:intergenic 45.0%
! GGCCTTATAATCGGTAAAGG+AGG + tig0031099:29762-29781 Msa1445420:CDS 45.0%
AGAGTATGCAAGCTTCTACC+GGG + tig0031099:29796-29815 Msa1445420:CDS 45.0%
TCTGTTGATGTATCACCTGG+GGG - tig0031099:30020-30039 None:intergenic 45.0%
GATAACATACCTCACCAGTG+AGG - tig0031099:30109-30128 None:intergenic 45.0%
GTCTCCAGTCTGAGTTATCA+TGG - tig0031099:30388-30407 None:intergenic 45.0%
! GACAGCACTTTGAAGACTCT+TGG + tig0031099:30485-30504 Msa1445420:intron 45.0%
TTCCCTCAACCCAATCTAAC+AGG - tig0031099:30810-30829 None:intergenic 45.0%
!! TGTTAGATTGGGTTGAGGGA+AGG + tig0031099:30809-30828 Msa1445420:intron 45.0%
ACTTGGGGCTTAGTGAAGTA+CGG + tig0031099:30853-30872 Msa1445420:intron 45.0%
CTCAGAAATTCAGGGAACTC+AGG + tig0031099:31114-31133 Msa1445420:CDS 45.0%
AGAAATTCAGGGAACTCAGG+TGG + tig0031099:31117-31136 Msa1445420:CDS 45.0%
TCAGGTGGTTATACTCAGCA+AGG + tig0031099:31132-31151 Msa1445420:CDS 45.0%
CAACAAGCTGGTTATGGCTA+TGG + tig0031099:31204-31223 Msa1445420:CDS 45.0%
AACCTCCTTCCTCTGGTTAT+AGG + tig0031099:31466-31485 Msa1445420:CDS 45.0%
GGTTATGGTCAGGAAAGCTA+TGG + tig0031099:31501-31520 Msa1445420:CDS 45.0%
TTACTCCCACTGCCATAACT+GGG - tig0031099:31603-31622 None:intergenic 45.0%
ATTACTCCCACTGCCATAAC+TGG - tig0031099:31604-31623 None:intergenic 45.0%
!! AGTAGTGGGTTGGGAAGTTT+GGG - tig0031099:31676-31695 None:intergenic 45.0%
CTGGTTGAGGAGTTTCTTGT+TGG - tig0031099:31725-31744 None:intergenic 45.0%
CAACAAGAAACTCCTCAACC+AGG + tig0031099:31723-31742 Msa1445420:CDS 45.0%
GAAACTCCTCAACCAGGTTA+TGG + tig0031099:31729-31748 Msa1445420:CDS 45.0%
AACTCCTCAACCAGGTTATG+GGG + tig0031099:31731-31750 Msa1445420:CDS 45.0%
! AGACTGTGGTTGACTTCCAT+AGG - tig0031099:31778-31797 None:intergenic 45.0%
TATGGAAGTCAACCACAGTC+TGG + tig0031099:31777-31796 Msa1445420:CDS 45.0%
AGTCAACCACAGTCTGGTTA+TGG + tig0031099:31783-31802 Msa1445420:CDS 45.0%
TCTGGTTATGGACCTGGTTA+TGG + tig0031099:31795-31814 Msa1445420:CDS 45.0%
! TAAGCAGGTGGATTTGCACT+TGG - tig0031099:31840-31859 None:intergenic 45.0%
AGTGCAAATCCACCTGCTTA+TGG + tig0031099:31840-31859 Msa1445420:CDS 45.0%
TGTGATTGACCATAAGCAGG+TGG - tig0031099:31852-31871 None:intergenic 45.0%
GACTGTGATTGACCATAAGC+AGG - tig0031099:31855-31874 None:intergenic 45.0%
!! TGAGGAGCACCATATGATTG+CGG - tig0031099:31996-32015 None:intergenic 45.0%
CAATCATATGGTGCTCCTCA+AGG + tig0031099:31996-32015 Msa1445420:CDS 45.0%
GCACTAGTCATCCTTACCTA+GGG - tig0031099:32381-32400 None:intergenic 45.0%
AGCACTAGTCATCCTTACCT+AGG - tig0031099:32382-32401 None:intergenic 45.0%
CGCTTTCTGCATAATCTAGG+AGG - tig0031099:32549-32568 None:intergenic 45.0%
! CGTCGCTTTCTGCATAATCT+AGG - tig0031099:32552-32571 None:intergenic 45.0%
GGAACTTCGCAGTTCATTTC+AGG - tig0031099:33273-33292 None:intergenic 45.0%
GTGTGGGAAGGAGTTGGATT+AGG - tig0031099:28122-28141 None:intergenic 50.0%
AGTGAAAACACGGTGTGGGA+AGG - tig0031099:28134-28153 None:intergenic 50.0%
! CTTGGTTCGTTTGGGATCGT+AGG - tig0031099:28335-28354 None:intergenic 50.0%
!! CGATTGTGGAGCACCGTTAT+CGG - tig0031099:28359-28378 None:intergenic 50.0%
! CGATAACGGTGCTCCACAAT+CGG + tig0031099:28357-28376 Msa1445420:CDS 50.0%
! GATAACGGTGCTCCACAATC+GGG + tig0031099:28358-28377 Msa1445420:CDS 50.0%
ATAACGGTGCTCCACAATCG+GGG + tig0031099:28359-28378 Msa1445420:CDS 50.0%
TCGCAGCAAGGTGGTAGTTA+TGG + tig0031099:28412-28431 Msa1445420:CDS 50.0%
TCAGCAGAAGAAACAGCGTC+AGG - tig0031099:28607-28626 None:intergenic 50.0%
AGACGGATGGTTGCACAATC+TGG + tig0031099:29602-29621 Msa1445420:CDS 50.0%
GACGGATGGTTGCACAATCT+GGG + tig0031099:29603-29622 Msa1445420:CDS 50.0%
ACGGATGGTTGCACAATCTG+GGG + tig0031099:29604-29623 Msa1445420:CDS 50.0%
GAGTATGCAAGCTTCTACCG+GGG + tig0031099:29797-29816 Msa1445420:CDS 50.0%
GAAAACCTGAATTCGTGCCC+CGG - tig0031099:29817-29836 None:intergenic 50.0%
ACTGGAGACTGCAGTAGCTA+TGG + tig0031099:30399-30418 Msa1445420:intron 50.0%
GTAGATGAGCACAAGTCCCA+AGG - tig0031099:30670-30689 None:intergenic 50.0%
! TGGCCTGTTAGATTGGGTTG+AGG + tig0031099:30804-30823 Msa1445420:intron 50.0%
!! GGCCTGTTAGATTGGGTTGA+GGG + tig0031099:30805-30824 Msa1445420:intron 50.0%
!! CCATAACCAGCTTGTTGTGC+AGG - tig0031099:31201-31220 None:intergenic 50.0%
CCTGCACAACAAGCTGGTTA+TGG + tig0031099:31198-31217 Msa1445420:CDS 50.0%
GATGGACCAGAGTATGATCC+AGG - tig0031099:31234-31253 None:intergenic 50.0%
GGCATGTTATACTGCGGTGA+TGG - tig0031099:31252-31271 None:intergenic 50.0%
GGCTGAGGCATGTTATACTG+CGG - tig0031099:31258-31277 None:intergenic 50.0%
TGAGGAGGATAGCCTGCATA+TGG - tig0031099:31282-31301 None:intergenic 50.0%
TGAGTAGACTGCTGGTGAGA+TGG - tig0031099:31348-31367 None:intergenic 50.0%
CACTTGCATGAGTAGACTGC+TGG - tig0031099:31356-31375 None:intergenic 50.0%
CAGCAGTCTACTCATGCAAG+TGG + tig0031099:31354-31373 Msa1445420:CDS 50.0%
!! TTTGCTGTTGCTGGGGTTGT+TGG - tig0031099:31395-31414 None:intergenic 50.0%
!!! CCAGGATTTTGCTGTTGCTG+GGG - tig0031099:31402-31421 None:intergenic 50.0%
!!! CCCAGGATTTTGCTGTTGCT+GGG - tig0031099:31403-31422 None:intergenic 50.0%
CCCAGCAACAGCAAAATCCT+GGG + tig0031099:31400-31419 Msa1445420:CDS 50.0%
CCAGCAACAGCAAAATCCTG+GGG + tig0031099:31401-31420 Msa1445420:CDS 50.0%
CAGCAACAGCAAAATCCTGG+GGG + tig0031099:31402-31421 Msa1445420:CDS 50.0%
TACAGTCAACCTCCTTCCTC+TGG + tig0031099:31459-31478 Msa1445420:CDS 50.0%
TGCCTATAACCAGAGGAAGG+AGG - tig0031099:31471-31490 None:intergenic 50.0%
GGTTGCCTATAACCAGAGGA+AGG - tig0031099:31474-31493 None:intergenic 50.0%
TCCTCTGGTTATAGGCAACC+TGG + tig0031099:31474-31493 Msa1445420:CDS 50.0%
TCCAGGTTGCCTATAACCAG+AGG - tig0031099:31478-31497 None:intergenic 50.0%
TGGTTATAGGCAACCTGGAC+AGG + tig0031099:31479-31498 Msa1445420:CDS 50.0%
GGTTATAGGCAACCTGGACA+GGG + tig0031099:31480-31499 Msa1445420:CDS 50.0%
GCGCAACAACAATCTGGGTA+TGG + tig0031099:31534-31553 Msa1445420:CDS 50.0%
TGGGAGTAATCCAACCCAAG+AGG + tig0031099:31614-31633 Msa1445420:CDS 50.0%
GGGAGTAATCCAACCCAAGA+GGG + tig0031099:31615-31634 Msa1445420:CDS 50.0%
GGAGTAATCCAACCCAAGAG+GGG + tig0031099:31616-31635 Msa1445420:CDS 50.0%
!! CAGTAGTGGGTTGGGAAGTT+TGG - tig0031099:31677-31696 None:intergenic 50.0%
!! GTTGGTAGCATAGCCTTGCT+GGG - tig0031099:31703-31722 None:intergenic 50.0%
TTGACTTCCATAGGCCGCTT+GGG - tig0031099:31769-31788 None:intergenic 50.0%
TCTGGCTGAGCATATCCAGA+AGG - tig0031099:31933-31952 None:intergenic 50.0%
GGATATGCTCAGCCAGAGTT+AGG + tig0031099:31936-31955 Msa1445420:CDS 50.0%
TATGATTGCGGACCATACCC+TGG - tig0031099:31984-32003 None:intergenic 50.0%
GGGTATGGTCCGCAATCATA+TGG + tig0031099:31984-32003 Msa1445420:CDS 50.0%
TCATATGGTGCTCCTCAAGG+TGG + tig0031099:31999-32018 Msa1445420:CDS 50.0%
TTCCATATGACGGTGGAGTC+TGG - tig0031099:32040-32059 None:intergenic 50.0%
ACTTTAGCAACACTGCCCTG+TGG - tig0031099:32134-32153 None:intergenic 50.0%
TTGGTTGTGTTGTGTCCGGT+TGG + tig0031099:32605-32624 Msa1445420:intron 50.0%
!! TGCAGAATTTGGTGCAACCG+TGG + tig0031099:33301-33320 Msa1445420:three_prime_UTR 50.0%
AACACGGTGTGGGAAGGAGT+TGG - tig0031099:28128-28147 None:intergenic 55.0%
! TTCGAGTTCGATGTCCGTGG+CGG - tig0031099:28239-28258 None:intergenic 55.0%
! GACTTCGAGTTCGATGTCCG+TGG - tig0031099:28242-28261 None:intergenic 55.0%
TTGGGATCGTAGGAGAGTGG+TGG - tig0031099:28325-28344 None:intergenic 55.0%
! CGTTTGGGATCGTAGGAGAG+TGG - tig0031099:28328-28347 None:intergenic 55.0%
!! TGGAGCACCGTTATCGGACT+TGG - tig0031099:28353-28372 None:intergenic 55.0%
AAGCCGCAATACTCGCAGCA+AGG + tig0031099:28400-28419 Msa1445420:CDS 55.0%
! CCACCTTGCTGCGAGTATTG+CGG - tig0031099:28406-28425 None:intergenic 55.0%
CGGATGGTTGCACAATCTGG+GGG + tig0031099:29605-29624 Msa1445420:CDS 55.0%
! CCAAAAAGCATGCCTGCAGC+TGG - tig0031099:29684-29703 None:intergenic 55.0%
! CCAGCTGCAGGCATGCTTTT+TGG + tig0031099:29681-29700 Msa1445420:intron 55.0%
TTCTACCGGGGCACGAATTC+AGG + tig0031099:29809-29828 Msa1445420:CDS 55.0%
ACTGCCCGACTCTCATGACT+TGG + tig0031099:29929-29948 Msa1445420:intron 55.0%
ATACCTTTGCATCCTCCCCC+AGG + tig0031099:30002-30021 Msa1445420:CDS 55.0%
GTTGATGTATCACCTGGGGG+AGG - tig0031099:30017-30036 None:intergenic 55.0%
! TGGGTTGAGGGAAGGTTGAG+AGG + tig0031099:30817-30836 Msa1445420:intron 55.0%
GGTTATGGCTATGGGCAACC+TGG + tig0031099:31213-31232 Msa1445420:CDS 55.0%
GGGCAACCTGGATCATACTC+TGG + tig0031099:31225-31244 Msa1445420:CDS 55.0%
ATGCCTCAGCCACCATATGC+AGG + tig0031099:31267-31286 Msa1445420:CDS 55.0%
TAGCCTGCATATGGTGGCTG+AGG - tig0031099:31273-31292 None:intergenic 55.0%
GGAGGATAGCCTGCATATGG+TGG - tig0031099:31279-31298 None:intergenic 55.0%
GAATATCCACCGGGTTGCTG+AGG - tig0031099:31300-31319 None:intergenic 55.0%
CAGTTGGCGGAATATCCACC+GGG - tig0031099:31309-31328 None:intergenic 55.0%
CCAGTTGGCGGAATATCCAC+CGG - tig0031099:31310-31329 None:intergenic 55.0%
CGGTGGATATTCCGCCAACT+GGG + tig0031099:31308-31327 Msa1445420:CDS 55.0%
! AGTCGATTGGTCCCAGTTGG+CGG - tig0031099:31322-31341 None:intergenic 55.0%
! AGCAGTCGATTGGTCCCAGT+TGG - tig0031099:31325-31344 None:intergenic 55.0%
GGTGAGATGGAGCAGTCGAT+TGG - tig0031099:31335-31354 None:intergenic 55.0%
CCCCAGCAACAGCAAAATCC+TGG + tig0031099:31399-31418 Msa1445420:CDS 55.0%
!!! CCCCAGGATTTTGCTGTTGC+TGG - tig0031099:31404-31423 None:intergenic 55.0%
CTGTATGCAGACCCATCAGC+TGG - tig0031099:31438-31457 None:intergenic 55.0%
AGGCAACCTGGACAGGGTTA+TGG + tig0031099:31486-31505 Msa1445420:CDS 55.0%
ACCTGGACAGGGTTATGGTC+AGG + tig0031099:31491-31510 Msa1445420:CDS 55.0%
TCCTGACCATAACCCTGTCC+AGG - tig0031099:31495-31514 None:intergenic 55.0%
TCTGCTCCCAGTTATGGCAG+TGG + tig0031099:31594-31613 Msa1445420:CDS 55.0%
CTGCTCCCAGTTATGGCAGT+GGG + tig0031099:31595-31614 Msa1445420:CDS 55.0%
! GTTGGAAGTGTGCCCCTCTT+GGG - tig0031099:31631-31650 None:intergenic 55.0%
! AGTTGGAAGTGTGCCCCTCT+TGG - tig0031099:31632-31651 None:intergenic 55.0%
! GAGGGGCACACTTCCAACTA+TGG + tig0031099:31633-31652 Msa1445420:CDS 55.0%
!! AGTGGGTTGGGAAGTTTGGG+AGG - tig0031099:31673-31692 None:intergenic 55.0%
!! CTGGGCAACAGTAGTGGGTT+GGG - tig0031099:31685-31704 None:intergenic 55.0%
CCTTGCTGGGCAACAGTAGT+GGG - tig0031099:31690-31709 None:intergenic 55.0%
!! GGTTGGTAGCATAGCCTTGC+TGG - tig0031099:31704-31723 None:intergenic 55.0%
GCTACCCCATAACCTGGTTG+AGG - tig0031099:31738-31757 None:intergenic 55.0%
! GTTGACTTCCATAGGCCGCT+TGG - tig0031099:31770-31789 None:intergenic 55.0%
CCAGGTCCATAACCAGACTG+TGG - tig0031099:31792-31811 None:intergenic 55.0%
CCACAGTCTGGTTATGGACC+TGG + tig0031099:31789-31808 Msa1445420:CDS 55.0%
!! GCACTTGGCTTTTGAGAGGG+AGG - tig0031099:31825-31844 None:intergenic 55.0%
ACTGACCATAGCCTCCTGCT+GGG - tig0031099:31884-31903 None:intergenic 55.0%
GTCAGCATATCCCTCTAGCC+AGG + tig0031099:31902-31921 Msa1445420:CDS 55.0%
CTGAGCATATCCAGAAGGCG+GGG - tig0031099:31928-31947 None:intergenic 55.0%
GCTGAGCATATCCAGAAGGC+GGG - tig0031099:31929-31948 None:intergenic 55.0%
GGCTGAGCATATCCAGAAGG+CGG - tig0031099:31930-31949 None:intergenic 55.0%
GCTCTCTGAGTGCCTAACTC+TGG - tig0031099:31951-31970 None:intergenic 55.0%
!! AGAGAGCACCAGTGCAACCA+GGG + tig0031099:31964-31983 Msa1445420:CDS 55.0%
TAGCGATGGAGCAACTGCAC+AGG + tig0031099:32103-32122 Msa1445420:CDS 55.0%
AACTGCACAGGCTGTTCCAC+AGG + tig0031099:32115-32134 Msa1445420:CDS 55.0%
ACTGCACAGGCTGTTCCACA+GGG + tig0031099:32116-32135 Msa1445420:CDS 55.0%
CGATGAACAACCCACCGCCA+CGG + tig0031099:28222-28241 Msa1445420:CDS 60.0%
AGTTCGATGTCCGTGGCGGT+GGG - tig0031099:28235-28254 None:intergenic 60.0%
GGTGACGCTGAGAAGACGAG+CGG - tig0031099:28296-28315 None:intergenic 60.0%
GCTCGTCTTCTCAGCGTCAC+CGG + tig0031099:28295-28314 Msa1445420:CDS 60.0%
CCGCAATACTCGCAGCAAGG+TGG + tig0031099:28403-28422 Msa1445420:CDS 60.0%
TAGGCTGAAGCTGGGGCTTC+TGG + tig0031099:29569-29588 Msa1445420:intron 60.0%
CTTCTGGCGGTGGCACTAGA+CGG + tig0031099:29585-29604 Msa1445420:CDS 60.0%
TCACCTGGGGGAGGATGCAA+AGG - tig0031099:30008-30027 None:intergenic 60.0%
AGCTAGACGGTGGTCGGGAT+TGG - tig0031099:31161-31180 None:intergenic 60.0%
AATCCCGACCACCGTCTAGC+TGG + tig0031099:31160-31179 Msa1445420:CDS 60.0%
ATCCCGACCACCGTCTAGCT+GGG + tig0031099:31161-31180 Msa1445420:CDS 60.0%
TGTTGTGCAGGAGCAGCAGG+AGG - tig0031099:31189-31208 None:intergenic 60.0%
!! GCTTGTTGTGCAGGAGCAGC+AGG - tig0031099:31192-31211 None:intergenic 60.0%
GCTGCTCCTGCACAACAAGC+TGG + tig0031099:31192-31211 Msa1445420:CDS 60.0%
GGCTATCCTCCTCAGCAACC+CGG + tig0031099:31288-31307 Msa1445420:CDS 60.0%
TATCCTCCTCAGCAACCCGG+TGG + tig0031099:31291-31310 Msa1445420:CDS 60.0%
TATCCACCGGGTTGCTGAGG+AGG - tig0031099:31297-31316 None:intergenic 60.0%
CCGGTGGATATTCCGCCAAC+TGG + tig0031099:31307-31326 Msa1445420:CDS 60.0%
GTCCTCCACAGCCAGCTGAT+GGG + tig0031099:31424-31443 Msa1445420:CDS 60.0%
GAAGTGTGCCCCTCTTGGGT+TGG - tig0031099:31627-31646 None:intergenic 60.0%
!! GCTGGGCAACAGTAGTGGGT+TGG - tig0031099:31686-31705 None:intergenic 60.0%
CCCACTACTGTTGCCCAGCA+AGG + tig0031099:31687-31706 Msa1445420:CDS 60.0%
GCCTTGCTGGGCAACAGTAG+TGG - tig0031099:31691-31710 None:intergenic 60.0%
GTAGGGGCTACCCCATAACC+TGG - tig0031099:31744-31763 None:intergenic 60.0%
ATAGGCCGCTTGGGAGGTAG+GGG - tig0031099:31760-31779 None:intergenic 60.0%
CATAGGCCGCTTGGGAGGTA+GGG - tig0031099:31761-31780 None:intergenic 60.0%
ACTTCCATAGGCCGCTTGGG+AGG - tig0031099:31766-31785 None:intergenic 60.0%
!! GAGGGAGGAGCACCATAACC+AGG - tig0031099:31810-31829 None:intergenic 60.0%
TCACAGTCACCTAGCCCAGC+AGG + tig0031099:31867-31886 Msa1445420:CDS 60.0%
GACTGACCATAGCCTCCTGC+TGG - tig0031099:31885-31904 None:intergenic 60.0%
!! CAGAGAGCACCAGTGCAACC+AGG + tig0031099:31963-31982 Msa1445420:CDS 60.0%
GCACCAGTGCAACCAGGGTA+TGG + tig0031099:31969-31988 Msa1445420:CDS 60.0%
GGACCATACCCTGGTTGCAC+TGG - tig0031099:31975-31994 None:intergenic 60.0%
! TAGCTAGGCTGGCCACCTTG+AGG - tig0031099:32014-32033 None:intergenic 60.0%
CAAGGTGGCCAGCCTAGCTA+TGG + tig0031099:32014-32033 Msa1445420:CDS 60.0%
GAGTCTGGCCATAGCTAGGC+TGG - tig0031099:32025-32044 None:intergenic 60.0%
GGTGGAGTCTGGCCATAGCT+AGG - tig0031099:32029-32048 None:intergenic 60.0%
GGCCAGACTCCACCGTCATA+TGG + tig0031099:32035-32054 Msa1445420:CDS 60.0%
GCTCCAGCGTATGCTAGCGA+TGG + tig0031099:32089-32108 Msa1445420:CDS 60.0%
GCTCCATCGCTAGCATACGC+TGG - tig0031099:32095-32114 None:intergenic 60.0%
GAGTTCGATGTCCGTGGCGG+TGG - tig0031099:28236-28255 None:intergenic 65.0%
! GTAGGAGAGTGGTGGAGCGC+CGG - tig0031099:28317-28336 None:intergenic 65.0%
GCTGAAGCTGGGGCTTCTGG+CGG + tig0031099:29572-29591 Msa1445420:CDS 65.0%
TGGCGGTGGCACTAGACGGA+TGG + tig0031099:29589-29608 Msa1445420:CDS 65.0%
AGCCCAGCTAGACGGTGGTC+GGG - tig0031099:31166-31185 None:intergenic 65.0%
GAGCCCAGCTAGACGGTGGT+CGG - tig0031099:31167-31186 None:intergenic 65.0%
GCAGGAGGAGCCCAGCTAGA+CGG - tig0031099:31174-31193 None:intergenic 65.0%
GGTCCTCCACAGCCAGCTGA+TGG + tig0031099:31423-31442 Msa1445420:CDS 65.0%
GACCCATCAGCTGGCTGTGG+AGG - tig0031099:31429-31448 None:intergenic 65.0%
GCAGACCCATCAGCTGGCTG+TGG - tig0031099:31432-31451 None:intergenic 65.0%
GGTAGCCCCTACCTCCCAAG+CGG + tig0031099:31752-31771 Msa1445420:CDS 65.0%
CCATAGGCCGCTTGGGAGGT+AGG - tig0031099:31762-31781 None:intergenic 65.0%
CCTACCTCCCAAGCGGCCTA+TGG + tig0031099:31759-31778 Msa1445420:CDS 65.0%
CAGTCACCTAGCCCAGCAGG+AGG + tig0031099:31870-31889 Msa1445420:CDS 65.0%
CCATAGCCTCCTGCTGGGCT+AGG - tig0031099:31879-31898 None:intergenic 65.0%
CCTAGCCCAGCAGGAGGCTA+TGG + tig0031099:31876-31895 Msa1445420:CDS 65.0%
CATATCCAGAAGGCGGGGCC+TGG - tig0031099:31923-31942 None:intergenic 65.0%
GAAGCTGGGGCTTCTGGCGG+TGG + tig0031099:29575-29594 Msa1445420:CDS 70.0%
GGAGGAGCCCAGCTAGACGG+TGG - tig0031099:31171-31190 None:intergenic 70.0%
GAAGGCGGGGCCTGGCTAGA+GGG - tig0031099:31915-31934 None:intergenic 70.0%
AGAAGGCGGGGCCTGGCTAG+AGG - tig0031099:31916-31935 None:intergenic 70.0%
TCTAGCCAGGCCCCGCCTTC+TGG + tig0031099:31915-31934 Msa1445420:CDS 70.0%
GCTGGCTGTGGAGGACCCCC+AGG - tig0031099:31420-31439 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
tig0031099 gene 28090 33395 28090 ID=Msa1445420;Name=Msa1445420
tig0031099 mRNA 28090 33395 28090 ID=Msa1445420-mRNA-1;Parent=Msa1445420;Name=Msa1445420-mRNA-1;_AED=0.06;_eAED=0.06;_QI=91|1|1|1|0.8|0.66|6|390|605
tig0031099 exon 28090 28654 28090 ID=Msa1445420-mRNA-1:exon:14972;Parent=Msa1445420-mRNA-1
tig0031099 exon 29572 29661 29572 ID=Msa1445420-mRNA-1:exon:14973;Parent=Msa1445420-mRNA-1
tig0031099 exon 29759 29830 29759 ID=Msa1445420-mRNA-1:exon:14974;Parent=Msa1445420-mRNA-1
tig0031099 exon 29999 30118 29999 ID=Msa1445420-mRNA-1:exon:14975;Parent=Msa1445420-mRNA-1
tig0031099 exon 31108 32383 31108 ID=Msa1445420-mRNA-1:exon:14976;Parent=Msa1445420-mRNA-1
tig0031099 exon 33220 33395 33220 ID=Msa1445420-mRNA-1:exon:14977;Parent=Msa1445420-mRNA-1
tig0031099 five_prime_UTR 28090 28180 28090 ID=Msa1445420-mRNA-1:five_prime_utr;Parent=Msa1445420-mRNA-1
tig0031099 CDS 28181 28654 28181 ID=Msa1445420-mRNA-1:cds;Parent=Msa1445420-mRNA-1
tig0031099 CDS 29572 29661 29572 ID=Msa1445420-mRNA-1:cds;Parent=Msa1445420-mRNA-1
tig0031099 CDS 29759 29830 29759 ID=Msa1445420-mRNA-1:cds;Parent=Msa1445420-mRNA-1
tig0031099 CDS 29999 30118 29999 ID=Msa1445420-mRNA-1:cds;Parent=Msa1445420-mRNA-1
tig0031099 CDS 31108 32169 31108 ID=Msa1445420-mRNA-1:cds;Parent=Msa1445420-mRNA-1
tig0031099 three_prime_UTR 32170 32383 32170 ID=Msa1445420-mRNA-1:three_prime_utr;Parent=Msa1445420-mRNA-1
tig0031099 three_prime_UTR 33220 33395 33220 ID=Msa1445420-mRNA-1:three_prime_utr;Parent=Msa1445420-mRNA-1
Gene Sequence

>Msa1445420

ATGGCGGAAGAAGCACAGTACGCAACCCTAAAACGCAAGTACGATGAACAACCCACCGCCACGGACATCGAACTCGAAGTCGCAAACGCCAAACAACGAGCTCAAGAAGTTGCCGCTCGTCTTCTCAGCGTCACCGGCGCTCCACCACTCTCCTACGATCCCAAACGAACCAAGTCCGATAACGGTGCTCCACAATCGGGGTTTGATTCTTACGATTTGAAGCCGCAATACTCGCAGCAAGGTGGTAGTTATGGTTCTAGTAAGAAGATTGAAATACCTAATGGTAGGGTTGGTGTTCTTATTGGTAAAGGAGGTGAAACTATTAAGTATCTTCAGATGCAATCTGGTGCTAAGATTCAAGTTACTCGTGATATGGATGCTGATCCTAATTCTCAGACTAGGATGGTTGAACTTATGGGTACTCCTGACGCTGTTTCTTCTGCTGAGAAACTCATCAATGAAGTCCTTGCTGAGGCTGAAGCTGGGGCTTCTGGCGGTGGCACTAGACGGATGGTTGCACAATCTGGGGGTGATGAATTTGTGATGCAAATACCAAACAATAAGGTTGGCCTTATAATCGGTAAAGGAGGAGAAACAATAAAGAGTATGCAAGCTTCTACCGGGGCACGAATTCAGGTGATACCTTTGCATCCTCCCCCAGGTGATACATCAACAGAAAGAACATTAAAAATCGATGGGACCCCTGATCAAATTGAATCAGCAAAGCAATTGGTTAATCAAATCCTCACTGGTGAGAATCGTCTCAGAAATTCAGGGAACTCAGGTGGTTATACTCAGCAAGGTTACCAATCCCGACCACCGTCTAGCTGGGCTCCTCCTGCTGCTCCTGCACAACAAGCTGGTTATGGCTATGGGCAACCTGGATCATACTCTGGTCCATCACCGCAGTATAACATGCCTCAGCCACCATATGCAGGCTATCCTCCTCAGCAACCCGGTGGATATTCCGCCAACTGGGACCAATCGACTGCTCCATCTCACCAGCAGTCTACTCATGCAAGTGGTTATGATTATTACAACCAACAACCCCAGCAACAGCAAAATCCTGGGGGTCCTCCACAGCCAGCTGATGGGTCTGCATACAGTTACAGTCAACCTCCTTCCTCTGGTTATAGGCAACCTGGACAGGGTTATGGTCAGGAAAGCTATGGTGCGTATAATGCGCAACAACAATCTGGGTATGGTCAGCCACAAACATATGATCAGCAACAAGGTTATGGCTCTGCTCCCAGTTATGGCAGTGGGAGTAATCCAACCCAAGAGGGGCACACTTCCAACTATGGATCACAAGCAGATACCTCCCAAACTTCCCAACCCACTACTGTTGCCCAGCAAGGCTATGCTACCAACCAACAAGAAACTCCTCAACCAGGTTATGGGGTAGCCCCTACCTCCCAAGCGGCCTATGGAAGTCAACCACAGTCTGGTTATGGACCTGGTTATGGTGCTCCTCCCTCTCAAAAGCCAAGTGCAAATCCACCTGCTTATGGTCAATCACAGTCACCTAGCCCAGCAGGAGGCTATGGTCAGTCAGCATATCCCTCTAGCCAGGCCCCGCCTTCTGGATATGCTCAGCCAGAGTTAGGCACTCAGAGAGCACCAGTGCAACCAGGGTATGGTCCGCAATCATATGGTGCTCCTCAAGGTGGCCAGCCTAGCTATGGCCAGACTCCACCGTCATATGGAAATAGTTCTTATGGTGCTAGTTATGCTCAGGCTCCAGCGTATGCTAGCGATGGAGCAACTGCACAGGCTGTTCCACAGGGCAGTGTTGCTAAAGTGTCACCCAAGAGTTGA
Protein sequence

>Msa1445420

MAEEAQYATLKRKYDEQPTATDIELEVANAKQRAQEVAARLLSVTGAPPLSYDPKRTKSDNGAPQSGFDSYDLKPQYSQQGGSYGSSKKIEIPNGRVGVLIGKGGETIKYLQMQSGAKIQVTRDMDADPNSQTRMVELMGTPDAVSSAEKLINEVLAEAEAGASGGGTRRMVAQSGGDEFVMQIPNNKVGLIIGKGGETIKSMQASTGARIQVIPLHPPPGDTSTERTLKIDGTPDQIESAKQLVNQILTGENRLRNSGNSGGYTQQGYQSRPPSSWAPPAAPAQQAGYGYGQPGSYSGPSPQYNMPQPPYAGYPPQQPGGYSANWDQSTAPSHQQSTHASGYDYYNQQPQQQQNPGGPPQPADGSAYSYSQPPSSGYRQPGQGYGQESYGAYNAQQQSGYGQPQTYDQQQGYGSAPSYGSGSNPTQEGHTSNYGSQADTSQTSQPTTVAQQGYATNQQETPQPGYGVAPTSQAAYGSQPQSGYGPGYGAPPSQKPSANPPAYGQSQSPSPAGGYGQSAYPSSQAPPSGYAQPELGTQRAPVQPGYGPQSYGAPQGGQPSYGQTPPSYGNSSYGASYAQAPAYASDGATAQAVPQGSVAKVSPKS*