Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0404000 | XP_003600611.1 | 98.780 | 82 | 1 | 0 | 1 | 82 | 1 | 82 | 7.71e-51 | 164 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0404000 | G7J7W8 | 98.780 | 82 | 1 | 0 | 1 | 82 | 1 | 82 | 3.68e-51 | 164 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0000490 | Msa0404000 | -0.809239 | 2.087612e-50 | -8.615850e-47 |
| Msa0012040 | Msa0404000 | 0.802549 | 5.321450e-49 | -8.615850e-47 |
| Msa0013050 | Msa0404000 | -0.836977 | 6.819763e-57 | -8.615850e-47 |
| Msa0014710 | Msa0404000 | 0.805122 | 1.554946e-49 | -8.615850e-47 |
| Msa0015460 | Msa0404000 | 0.801479 | 8.830330e-49 | -8.615850e-47 |
| Msa0028660 | Msa0404000 | 0.801615 | 8.281736e-49 | -8.615850e-47 |
| Msa0057140 | Msa0404000 | 0.810253 | 1.263324e-50 | -8.615850e-47 |
| Msa0069310 | Msa0404000 | 0.811446 | 6.973105e-51 | -8.615850e-47 |
| Msa0071240 | Msa0404000 | 0.809064 | 2.275595e-50 | -8.615850e-47 |
| Msa0084940 | Msa0404000 | 0.813756 | 2.179165e-51 | -8.615850e-47 |
| Msa0085360 | Msa0404000 | -0.804546 | 2.051448e-49 | -8.615850e-47 |
| Msa0092990 | Msa0404000 | 0.832080 | 1.159141e-55 | -8.615850e-47 |
| Msa0094920 | Msa0404000 | 0.822618 | 2.151578e-53 | -8.615850e-47 |
| Msa0095010 | Msa0404000 | 0.803588 | 3.245261e-49 | -8.615850e-47 |
| Msa0109590 | Msa0404000 | 0.805959 | 1.037778e-49 | -8.615850e-47 |
| Msa0119850 | Msa0404000 | 0.802769 | 4.794127e-49 | -8.615850e-47 |
| Msa0120340 | Msa0404000 | 0.819588 | 1.073506e-52 | -8.615850e-47 |
| Msa0129190 | Msa0404000 | -0.804974 | 1.669691e-49 | -8.615850e-47 |
| Msa0140390 | Msa0404000 | 0.802239 | 6.165733e-49 | -8.615850e-47 |
| Msa0148120 | Msa0404000 | 0.843115 | 1.709068e-58 | -8.615850e-47 |
| Msa0156650 | Msa0404000 | -0.803922 | 2.766026e-49 | -8.615850e-47 |
| Msa0162770 | Msa0404000 | -0.848395 | 6.298149e-60 | -8.615850e-47 |
| Msa0172780 | Msa0404000 | 0.804593 | 2.005347e-49 | -8.615850e-47 |
| Msa0173990 | Msa0404000 | 0.802280 | 6.047129e-49 | -8.615850e-47 |
| Msa0187230 | Msa0404000 | 0.804562 | 2.035186e-49 | -8.615850e-47 |
| Msa0223290 | Msa0404000 | 0.808383 | 3.182610e-50 | -8.615850e-47 |
| Msa0223380 | Msa0404000 | 0.823928 | 1.063424e-53 | -8.615850e-47 |
| Msa0229490 | Msa0404000 | -0.802317 | 5.941683e-49 | -8.615850e-47 |
| Msa0233610 | Msa0404000 | 0.813954 | 1.970667e-51 | -8.615850e-47 |
| Msa0365490 | Msa0404000 | 0.800047 | 1.730986e-48 | -8.615850e-47 |
| Msa0377530 | Msa0404000 | 0.822058 | 2.901268e-53 | -8.615850e-47 |
| Msa0380040 | Msa0404000 | 0.813756 | 2.178646e-51 | -8.615850e-47 |
| Msa0389810 | Msa0404000 | 0.835839 | 1.328264e-56 | -8.615850e-47 |
| Msa0394340 | Msa0404000 | 0.807315 | 5.368745e-50 | -8.615850e-47 |
| Msa0404000 | Msa0404030 | 0.958017 | 6.640415e-116 | -8.615850e-47 |
| Msa0404000 | Msa0421780 | -0.816386 | 5.678801e-52 | -8.615850e-47 |
| Msa0404000 | Msa0427910 | 0.800869 | 1.177025e-48 | -8.615850e-47 |
| Msa0404000 | Msa0429290 | 0.818645 | 1.759033e-52 | -8.615850e-47 |
| Msa0404000 | Msa0431670 | 0.815855 | 7.464074e-52 | -8.615850e-47 |
| Msa0404000 | Msa0442200 | 0.826009 | 3.431934e-54 | -8.615850e-47 |
| Msa0404000 | Msa0442850 | 0.809408 | 1.920872e-50 | -8.615850e-47 |
| Msa0404000 | Msa0443920 | 0.867036 | 1.839498e-65 | -8.615850e-47 |
| Msa0404000 | Msa0464900 | 0.815421 | 9.324990e-52 | -8.615850e-47 |
| Msa0404000 | Msa0467960 | -0.800520 | 1.386626e-48 | -8.615850e-47 |
| Msa0404000 | Msa0468130 | 0.834135 | 3.571393e-56 | -8.615850e-47 |
| Msa0404000 | Msa0473240 | 0.838745 | 2.396586e-57 | -8.615850e-47 |
| Msa0404000 | Msa0475580 | 0.818060 | 2.386569e-52 | -8.615850e-47 |
| Msa0404000 | Msa0477260 | 0.809328 | 1.998067e-50 | -8.615850e-47 |
| Msa0404000 | Msa0482190 | -0.800466 | 1.422734e-48 | -8.615850e-47 |
| Msa0404000 | Msa0489610 | 0.828249 | 9.986277e-55 | -8.615850e-47 |
| Msa0404000 | Msa0500720 | 0.800437 | 1.442199e-48 | -8.615850e-47 |
| Msa0404000 | Msa0517490 | 0.823577 | 1.285164e-53 | -8.615850e-47 |
| Msa0404000 | Msa0519220 | 0.815198 | 1.045218e-51 | -8.615850e-47 |
| Msa0404000 | Msa0531990 | -0.800489 | 1.407265e-48 | -8.615850e-47 |
| Msa0404000 | Msa0532100 | -0.802648 | 5.077374e-49 | -8.615850e-47 |
| Msa0404000 | Msa0553220 | -0.841594 | 4.323913e-58 | -8.615850e-47 |
| Msa0404000 | Msa0555950 | 0.828963 | 6.710203e-55 | -8.615850e-47 |
| Msa0404000 | Msa0561130 | -0.821533 | 3.838041e-53 | -8.615850e-47 |
| Msa0404000 | Msa0568820 | 0.807327 | 5.336492e-50 | -8.615850e-47 |
| Msa0404000 | Msa0589190 | 0.810771 | 9.765884e-51 | -8.615850e-47 |
| Msa0404000 | Msa0591770 | 0.800113 | 1.678116e-48 | -8.615850e-47 |
| Msa0404000 | Msa0608710 | 0.817534 | 3.136614e-52 | -8.615850e-47 |
| Msa0404000 | Msa0610370 | 0.822551 | 2.230193e-53 | -8.615850e-47 |
| Msa0404000 | Msa0610430 | 0.816683 | 4.873582e-52 | -8.615850e-47 |
| Msa0404000 | Msa0619070 | 0.806244 | 9.036499e-50 | -8.615850e-47 |
| Msa0404000 | Msa0621590 | 0.805260 | 1.454376e-49 | -8.615850e-47 |
| Msa0404000 | Msa0633840 | 0.809099 | 2.236446e-50 | -8.615850e-47 |
| Msa0404000 | Msa0638070 | 0.802639 | 5.099912e-49 | -8.615850e-47 |
| Msa0404000 | Msa0638280 | 0.804335 | 2.269325e-49 | -8.615850e-47 |
| Msa0404000 | Msa0638320 | 0.823558 | 1.298311e-53 | -8.615850e-47 |
| Msa0404000 | Msa0647450 | -0.825175 | 5.409334e-54 | -8.615850e-47 |
| Msa0404000 | Msa0649350 | 0.824304 | 8.678112e-54 | -8.615850e-47 |
| Msa0404000 | Msa0650900 | 0.818579 | 1.820655e-52 | -8.615850e-47 |
| Msa0404000 | Msa0661190 | -0.823472 | 1.359789e-53 | -8.615850e-47 |
| Msa0404000 | Msa0662650 | 0.822641 | 2.124896e-53 | -8.615850e-47 |
| Msa0404000 | Msa0669850 | 0.801541 | 8.578540e-49 | -8.615850e-47 |
| Msa0404000 | Msa0670270 | 0.801330 | 9.472975e-49 | -8.615850e-47 |
| Msa0404000 | Msa0677270 | 0.824051 | 9.950897e-54 | -8.615850e-47 |
| Msa0404000 | Msa0706400 | 0.800014 | 1.757922e-48 | -8.615850e-47 |
| Msa0404000 | Msa0708860 | 0.820669 | 6.071581e-53 | -8.615850e-47 |
| Msa0404000 | Msa0716840 | 0.819365 | 1.206907e-52 | -8.615850e-47 |
| Msa0404000 | Msa0726860 | 0.806634 | 7.480435e-50 | -8.615850e-47 |
| Msa0404000 | Msa0731180 | 0.815505 | 8.934623e-52 | -8.615850e-47 |
| Msa0404000 | Msa0743260 | 0.855981 | 4.378240e-62 | -8.615850e-47 |
| Msa0404000 | Msa0773840 | 0.815750 | 7.876415e-52 | -8.615850e-47 |
| Msa0404000 | Msa0784380 | 0.806926 | 6.489050e-50 | -8.615850e-47 |
| Msa0404000 | Msa0784860 | 0.814506 | 1.487927e-51 | -8.615850e-47 |
| Msa0404000 | Msa0791820 | 0.840188 | 1.010610e-57 | -8.615850e-47 |
| Msa0404000 | Msa0792090 | 0.806359 | 8.549228e-50 | -8.615850e-47 |
| Msa0404000 | Msa0793390 | 0.805607 | 1.230229e-49 | -8.615850e-47 |
| Msa0404000 | Msa0831870 | 0.836040 | 1.181253e-56 | -8.615850e-47 |
| Msa0404000 | Msa0860900 | -0.830884 | 2.283392e-55 | -8.615850e-47 |
| Msa0404000 | Msa0864470 | -0.805397 | 1.361421e-49 | -8.615850e-47 |
| Msa0404000 | Msa0869120 | 0.807906 | 4.019784e-50 | -8.615850e-47 |
| Msa0404000 | Msa0874500 | 0.813392 | 2.620245e-51 | -8.615850e-47 |
| Msa0404000 | Msa0876580 | 0.800846 | 1.189926e-48 | -8.615850e-47 |
| Msa0404000 | Msa0879860 | 0.810536 | 1.098046e-50 | -8.615850e-47 |
| Msa0404000 | Msa0909000 | -0.803212 | 3.881920e-49 | -8.615850e-47 |
| Msa0404000 | Msa0930460 | -0.817566 | 3.085779e-52 | -8.615850e-47 |
| Msa0404000 | Msa0937330 | 0.800624 | 1.320459e-48 | -8.615850e-47 |
| Msa0404000 | Msa0947760 | 0.800541 | 1.372943e-48 | -8.615850e-47 |
| Msa0404000 | Msa0971020 | 0.817351 | 3.449734e-52 | -8.615850e-47 |
| Msa0404000 | Msa0982270 | 0.845147 | 4.868185e-59 | -8.615850e-47 |
| Msa0404000 | Msa0992490 | -0.820750 | 5.816108e-53 | -8.615850e-47 |
| Msa0404000 | Msa1010800 | 0.814983 | 1.166869e-51 | -8.615850e-47 |
| Msa0404000 | Msa1012830 | 0.824701 | 7.000232e-54 | -8.615850e-47 |
| Msa0404000 | Msa1021340 | 0.804939 | 1.697782e-49 | -8.615850e-47 |
| Msa0404000 | Msa1029080 | -0.807878 | 4.075796e-50 | -8.615850e-47 |
| Msa0404000 | Msa1039880 | 0.839282 | 1.738988e-57 | -8.615850e-47 |
| Msa0404000 | Msa1040890 | 0.811255 | 7.672404e-51 | -8.615850e-47 |
| Msa0404000 | Msa1046060 | 0.800158 | 1.643652e-48 | -8.615850e-47 |
| Msa0404000 | Msa1047720 | 0.812198 | 4.783499e-51 | -8.615850e-47 |
| Msa0404000 | Msa1053260 | 0.824490 | 7.848594e-54 | -8.615850e-47 |
| Msa0404000 | Msa1063510 | 0.814696 | 1.350636e-51 | -8.615850e-47 |
| Msa0404000 | Msa1072460 | -0.821968 | 3.044057e-53 | -8.615850e-47 |
| Msa0404000 | Msa1079730 | -0.801884 | 7.293882e-49 | -8.615850e-47 |
| Msa0404000 | Msa1085920 | 0.808253 | 3.391894e-50 | -8.615850e-47 |
| Msa0404000 | Msa1089840 | 0.804242 | 2.373080e-49 | -8.615850e-47 |
| Msa0404000 | Msa1092090 | 0.803403 | 3.545141e-49 | -8.615850e-47 |
| Msa0404000 | Msa1095480 | 0.823594 | 1.273255e-53 | -8.615850e-47 |
| Msa0404000 | Msa1109570 | 0.800321 | 1.522725e-48 | -8.615850e-47 |
| Msa0404000 | Msa1124540 | -0.811031 | 8.578277e-51 | -8.615850e-47 |
| Msa0404000 | Msa1130210 | -0.803678 | 3.108841e-49 | -8.615850e-47 |
| Msa0404000 | Msa1143930 | -0.841777 | 3.868450e-58 | -8.615850e-47 |
| Msa0404000 | Msa1171870 | 0.834294 | 3.256776e-56 | -8.615850e-47 |
| Msa0404000 | Msa1207460 | -0.814425 | 1.550973e-51 | -8.615850e-47 |
| Msa0404000 | Msa1217430 | -0.841223 | 5.412105e-58 | -8.615850e-47 |
| Msa0404000 | Msa1217860 | 0.809520 | 1.817150e-50 | -8.615850e-47 |
| Msa0404000 | Msa1219810 | 0.812468 | 4.175459e-51 | -8.615850e-47 |
| Msa0404000 | Msa1233500 | 0.829673 | 4.512598e-55 | -8.615850e-47 |
| Msa0404000 | Msa1233890 | 0.806418 | 8.307504e-50 | -8.615850e-47 |
| Msa0404000 | Msa1236070 | -0.804638 | 1.962220e-49 | -8.615850e-47 |
| Msa0404000 | Msa1267060 | 0.801967 | 7.013467e-49 | -8.615850e-47 |
| Msa0404000 | Msa1267260 | 0.826680 | 2.375052e-54 | -8.615850e-47 |
| Msa0404000 | Msa1269300 | 0.806645 | 7.438447e-50 | -8.615850e-47 |
| Msa0404000 | Msa1276190 | 0.811970 | 5.364234e-51 | -8.615850e-47 |
| Msa0404000 | Msa1276440 | 0.812070 | 5.100862e-51 | -8.615850e-47 |
| Msa0404000 | Msa1289010 | 0.827621 | 1.414284e-54 | -8.615850e-47 |
| Msa0404000 | Msa1300350 | -0.830118 | 3.516158e-55 | -8.615850e-47 |
| Msa0404000 | Msa1302190 | -0.848567 | 5.646787e-60 | -8.615850e-47 |
| Msa0404000 | Msa1303160 | 0.814784 | 1.291232e-51 | -8.615850e-47 |
| Msa0404000 | Msa1304840 | 0.807314 | 5.369398e-50 | -8.615850e-47 |
| Msa0404000 | Msa1306430 | 0.838319 | 3.086032e-57 | -8.615850e-47 |
| Msa0404000 | Msa1306750 | 0.818298 | 2.108926e-52 | -8.615850e-47 |
| Msa0404000 | Msa1307740 | 0.832515 | 9.046164e-56 | -8.615850e-47 |
| Msa0404000 | Msa1316820 | 0.804281 | 2.329245e-49 | -8.615850e-47 |
| Msa0404000 | Msa1322190 | 0.815430 | 9.280878e-52 | -8.615850e-47 |
| Msa0404000 | Msa1333990 | 0.807894 | 4.043522e-50 | -8.615850e-47 |
| Msa0404000 | Msa1340650 | 0.804675 | 1.927496e-49 | -8.615850e-47 |
| Msa0404000 | Msa1348600 | 0.806378 | 8.468605e-50 | -8.615850e-47 |
| Msa0404000 | Msa1358610 | -0.812291 | 4.564089e-51 | -8.615850e-47 |
| Msa0404000 | Msa1362880 | 0.816509 | 5.332426e-52 | -8.615850e-47 |
| Msa0404000 | Msa1369530 | 0.820699 | 5.973566e-53 | -8.615850e-47 |
| Msa0404000 | Msa1371090 | 0.822606 | 2.165409e-53 | -8.615850e-47 |
| Msa0404000 | Msa1403580 | -0.805703 | 1.174464e-49 | -8.615850e-47 |
| Msa0404000 | Msa1403930 | -0.809226 | 2.100630e-50 | -8.615850e-47 |
| Msa0404000 | Msa1410100 | 0.809573 | 1.770058e-50 | -8.615850e-47 |
| Msa0404000 | Msa1417830 | -0.809255 | 2.070807e-50 | -8.615850e-47 |
| Msa0404000 | Msa1424450 | 0.802941 | 4.417197e-49 | -8.615850e-47 |
| Msa0404000 | Msa1426030 | 0.802054 | 6.730850e-49 | -8.615850e-47 |
| Msa0404000 | Msa1430680 | 0.806563 | 7.741753e-50 | -8.615850e-47 |
| Msa0404000 | Msa1438700 | 0.961692 | 5.356709e-120 | -8.615850e-47 |
| Msa0404000 | Msa1439960 | 0.818931 | 1.515272e-52 | -8.615850e-47 |
| Msa0404000 | Msa1440000 | 0.807157 | 5.797441e-50 | -8.615850e-47 |
| Msa0404000 | Msa1443290 | -0.802370 | 5.792766e-49 | -8.615850e-47 |
| Msa0404000 | Msa1444250 | -0.803282 | 3.754709e-49 | -8.615850e-47 |
| Msa0404000 | Msa1444740 | 0.821788 | 3.350790e-53 | -8.615850e-47 |
| Msa0404000 | Msa1445420 | -0.809611 | 1.737456e-50 | -8.615850e-47 |
| Msa0404000 | Msa1455490 | 0.802386 | 5.749020e-49 | -8.615850e-47 |
| Msa0404000 | Msa1459760 | -0.821433 | 4.049278e-53 | -8.615850e-47 |
| Msa0404000 | Msa1465960 | 0.824325 | 8.581130e-54 | -8.615850e-47 |
| Msa0255080 | Msa0404000 | 0.800766 | 1.235600e-48 | -8.615850e-47 |
| Msa0260210 | Msa0404000 | 0.815499 | 8.962169e-52 | -8.615850e-47 |
| Msa0265380 | Msa0404000 | 0.812913 | 3.336408e-51 | -8.615850e-47 |
| Msa0268090 | Msa0404000 | 0.822967 | 1.784546e-53 | -8.615850e-47 |
| Msa0269450 | Msa0404000 | 0.833677 | 4.648176e-56 | -8.615850e-47 |
| Msa0279210 | Msa0404000 | -0.819022 | 1.444542e-52 | -8.615850e-47 |
| Msa0282250 | Msa0404000 | 0.803751 | 3.001269e-49 | -8.615850e-47 |
| Msa0289250 | Msa0404000 | 0.801440 | 8.994274e-49 | -8.615850e-47 |
| Msa0295330 | Msa0404000 | 0.803259 | 3.796626e-49 | -8.615850e-47 |
| Msa0303360 | Msa0404000 | 0.814434 | 1.544026e-51 | -8.615850e-47 |
| Msa0304290 | Msa0404000 | 0.834464 | 2.952014e-56 | -8.615850e-47 |
| Msa0304330 | Msa0404000 | 0.838064 | 3.588987e-57 | -8.615850e-47 |
| Msa0305890 | Msa0404000 | 0.814664 | 1.373381e-51 | -8.615850e-47 |
| Msa0307830 | Msa0404000 | -0.805484 | 1.305250e-49 | -8.615850e-47 |
| Msa0318970 | Msa0404000 | -0.808385 | 3.178675e-50 | -8.615850e-47 |
| Msa0326670 | Msa0404000 | 0.803309 | 3.707657e-49 | -8.615850e-47 |
| Msa0329350 | Msa0404000 | 0.803808 | 2.921852e-49 | -8.615850e-47 |
| Msa0333720 | Msa0404000 | -0.801667 | 8.081247e-49 | -8.615850e-47 |
| Msa0340810 | Msa0404000 | 0.815625 | 8.399060e-52 | -8.615850e-47 |
| Msa0344830 | Msa0404000 | 0.820856 | 5.498269e-53 | -8.615850e-47 |
| Msa0344870 | Msa0404000 | 0.801964 | 7.021831e-49 | -8.615850e-47 |
| Msa0347360 | Msa0404000 | 0.814983 | 1.166636e-51 | -8.615850e-47 |
| Msa0350990 | Msa0404000 | 0.801241 | 9.881851e-49 | -8.615850e-47 |
| Msa0351030 | Msa0404000 | 0.806369 | 8.505548e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0404000 | MtrunA17_Chr3g0109561 | 98.780 | 82 | 1 | 0 | 1 | 82 | 1 | 82 | 7.09e-55 | 164 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0404000 | AT4G21192.1 | 75.000 | 80 | 20 | 0 | 1 | 80 | 1 | 80 | 3.39e-42 | 132 |
| Msa0404000 | AT4G21192.2 | 75.000 | 80 | 20 | 0 | 1 | 80 | 1 | 80 | 3.39e-42 | 132 |
Find 38 sgRNAs with CRISPR-Local
Find 264 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAACATGTTCCTTCATTATC+AGG | 0.186242 | 3_2:+34643860 | None:intergenic |
| AAAATTTAATGTAACATATT+GGG | 0.235555 | 3_2:-34644005 | Msa0404000:three_prime_UTR |
| CATCCTATTGCAAAATTCTT+TGG | 0.235808 | 3_2:-34644612 | Msa0404000:CDS |
| ATTAGACAAATTTACAATTC+AGG | 0.239321 | 3_2:-34646086 | None:intergenic |
| TACAGAATTGAAAATAAAAT+TGG | 0.247760 | 3_2:-34644583 | Msa0404000:CDS |
| AGACCAAATTTCTAGTATTT+AGG | 0.278311 | 3_2:-34644063 | Msa0404000:three_prime_UTR |
| GGATGTTTGTGCAATGTTAA+AGG | 0.281917 | 3_2:+34645356 | None:intergenic |
| GTGCCTAAATACTAGAAATT+TGG | 0.309764 | 3_2:+34644060 | None:intergenic |
| CCTGGAGAAGGGAAAGAAAA+TGG | 0.310262 | 3_2:+34646045 | None:intergenic |
| TCAGATACCTATCATATAAT+AGG | 0.331996 | 3_2:-34644131 | Msa0404000:three_prime_UTR |
| TGAATTGCAGGAGAAGGTTT+TGG | 0.348646 | 3_2:-34645412 | Msa0404000:five_prime_UTR |
| TAGTGGGATAGTTGAATTGC+AGG | 0.380257 | 3_2:-34645424 | Msa0404000:intron |
| TTAGACAAATTTACAATTCA+GGG | 0.384978 | 3_2:-34646085 | None:intergenic |
| ACATCATCCTATTATATGAT+AGG | 0.413026 | 3_2:+34644124 | None:intergenic |
| CAGCAGTCAATAGAAATAGA+AGG | 0.433741 | 3_2:-34644335 | Msa0404000:exon |
| AAAGCCATTATACAAAACTA+AGG | 0.469743 | 3_2:+34644192 | None:intergenic |
| AACATGTTCCTTCATTATCA+GGG | 0.488395 | 3_2:+34643861 | None:intergenic |
| GTGTGCAAGCACTATACATT+TGG | 0.489849 | 3_2:-34643961 | Msa0404000:three_prime_UTR |
| GTGATTATACAAGACTAGTT+CGG | 0.492156 | 3_2:+34644087 | None:intergenic |
| AAATTTAATGTAACATATTG+GGG | 0.492689 | 3_2:-34644004 | Msa0404000:three_prime_UTR |
| CGAGCCATTGTACAAAACTA+AGG | 0.498044 | 3_2:+34644265 | None:intergenic |
| ATCAGAGTTTCAGATGATCC+TGG | 0.502693 | 3_2:+34646027 | None:intergenic |
| ACACATGGGTTAGCCTTGTA+TGG | 0.506872 | 3_2:+34643930 | None:intergenic |
| AGATGCAAAATTGCGATGGA+AGG | 0.540762 | 3_2:+34645999 | None:intergenic |
| GTTTCAGATGATCCTGGAGA+AGG | 0.550355 | 3_2:+34646033 | None:intergenic |
| ACAGAAAGCTGTGAAGAGAA+AGG | 0.562696 | 3_2:-34644425 | Msa0404000:intron |
| TTTCAGATGATCCTGGAGAA+GGG | 0.573076 | 3_2:+34646034 | None:intergenic |
| TGAAAAGAGCAAAGAACTCA+AGG | 0.575643 | 3_2:-34644395 | Msa0404000:CDS |
| GATAGTTGAATTGCAGGAGA+AGG | 0.577716 | 3_2:-34645418 | Msa0404000:intron |
| GATACCACCCCTGATAATGA+AGG | 0.582672 | 3_2:-34643869 | Msa0404000:three_prime_UTR |
| TACGAGATGCAAAATTGCGA+TGG | 0.584864 | 3_2:+34645995 | None:intergenic |
| TGTTCCTTCATTATCAGGGG+TGG | 0.590108 | 3_2:+34643865 | None:intergenic |
| GATGCAAAATTGCGATGGAA+GGG | 0.590702 | 3_2:+34646000 | None:intergenic |
| AAACTCACTTCAGCGCACAT+AGG | 0.624864 | 3_2:+34645335 | None:intergenic |
| ACATGTTCCTTCATTATCAG+GGG | 0.631126 | 3_2:+34643862 | None:intergenic |
| GTGCTTAATGCAGATTATCG+AGG | 0.641500 | 3_2:-34644658 | Msa0404000:intron |
| TGTTTGTGCAATGTTAAAGG+AGG | 0.660285 | 3_2:+34645359 | None:intergenic |
| GGAGTTTCAGAAGTGTCATG+TGG | 0.660393 | 3_2:-34644637 | Msa0404000:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTATAGTTTTTTCTTTT+TGG | + | chr3_2:34644394-34644413 | None:intergenic | 10.0% |
| !!! | AATTTTTATTATTATTAGAG+GGG | + | chr3_2:34645917-34645936 | None:intergenic | 10.0% |
| !! | AAAAATTTAATGTAACATAT+TGG | - | chr3_2:34645930-34645949 | Msa0404000:intron | 10.0% |
| !! | AAAATTTAATGTAACATATT+GGG | - | chr3_2:34645931-34645950 | Msa0404000:intron | 10.0% |
| !!! | TTTTTATAGTTTTTTCTTTT+TGG | + | chr3_2:34644394-34644413 | None:intergenic | 10.0% |
| !!! | AATTTTTATTATTATTAGAG+GGG | + | chr3_2:34645917-34645936 | None:intergenic | 10.0% |
| !! | AAAAATTTAATGTAACATAT+TGG | - | chr3_2:34645930-34645949 | Msa0404000:intron | 10.0% |
| !! | AAAATTTAATGTAACATATT+GGG | - | chr3_2:34645931-34645950 | Msa0404000:intron | 10.0% |
| !! | AAAAAAATCATTACTATTGA+GGG | + | chr3_2:34644005-34644024 | None:intergenic | 15.0% |
| !! | AAAAAAAATCATTACTATTG+AGG | + | chr3_2:34644006-34644025 | None:intergenic | 15.0% |
| !! | ACAAATACATGAAAAAAATT+GGG | + | chr3_2:34644096-34644115 | None:intergenic | 15.0% |
| !!! | TCCATTTTTTATTTTGTTTT+TGG | - | chr3_2:34644452-34644471 | Msa0404000:intron | 15.0% |
| !! | ACCAAAAACAAAATAAAAAA+TGG | + | chr3_2:34644456-34644475 | None:intergenic | 15.0% |
| !! | TACAGAATTGAAAATAAAAT+TGG | - | chr3_2:34645353-34645372 | Msa0404000:CDS | 15.0% |
| !! | GAACTTTAACATAAAAAATA+AGG | + | chr3_2:34645432-34645451 | None:intergenic | 15.0% |
| !!! | ATTTTTATTATTATTAGAGG+GGG | + | chr3_2:34645916-34645935 | None:intergenic | 15.0% |
| !! | AAATTTAATGTAACATATTG+GGG | - | chr3_2:34645932-34645951 | Msa0404000:intron | 15.0% |
| !! | AAAAAAATCATTACTATTGA+GGG | + | chr3_2:34644005-34644024 | None:intergenic | 15.0% |
| !! | AAAAAAAATCATTACTATTG+AGG | + | chr3_2:34644006-34644025 | None:intergenic | 15.0% |
| !! | ACAAATACATGAAAAAAATT+GGG | + | chr3_2:34644096-34644115 | None:intergenic | 15.0% |
| !!! | TCCATTTTTTATTTTGTTTT+TGG | - | chr3_2:34644452-34644471 | Msa0404000:intron | 15.0% |
| !! | ACCAAAAACAAAATAAAAAA+TGG | + | chr3_2:34644456-34644475 | None:intergenic | 15.0% |
| !! | TACAGAATTGAAAATAAAAT+TGG | - | chr3_2:34645353-34645372 | Msa0404000:CDS | 15.0% |
| !! | GAACTTTAACATAAAAAATA+AGG | + | chr3_2:34645432-34645451 | None:intergenic | 15.0% |
| !!! | ATTTTTATTATTATTAGAGG+GGG | + | chr3_2:34645916-34645935 | None:intergenic | 15.0% |
| !! | AAATTTAATGTAACATATTG+GGG | - | chr3_2:34645932-34645951 | Msa0404000:intron | 15.0% |
| !! | CACAAATACATGAAAAAAAT+TGG | + | chr3_2:34644097-34644116 | None:intergenic | 20.0% |
| !!! | AATTTTATATGGTTCTTGTA+TGG | + | chr3_2:34644228-34644247 | None:intergenic | 20.0% |
| !!! | TTAATGTTGGCAATTTTATA+TGG | + | chr3_2:34644239-34644258 | None:intergenic | 20.0% |
| !! | TTTGAATTGAACATAATAGT+GGG | - | chr3_2:34644496-34644515 | Msa0404000:intron | 20.0% |
| !! | TCATAAACAAAACCTTATAT+TGG | - | chr3_2:34644786-34644805 | Msa0404000:intron | 20.0% |
| !! | TTATATTGGAACATTGAAAT+GGG | - | chr3_2:34644800-34644819 | Msa0404000:intron | 20.0% |
| !!! | ATAACACTTGTTAGATTATT+TGG | - | chr3_2:34644876-34644895 | Msa0404000:intron | 20.0% |
| !!! | TAACACTTGTTAGATTATTT+GGG | - | chr3_2:34644877-34644896 | Msa0404000:intron | 20.0% |
| !!! | AATTGATTCTAAATCCATTA+TGG | + | chr3_2:34645166-34645185 | None:intergenic | 20.0% |
| !!! | GATAATTTATCTTTTTCCTT+TGG | - | chr3_2:34645204-34645223 | Msa0404000:intron | 20.0% |
| !! | ATGGAAAAAATTGATACATA+TGG | + | chr3_2:34645710-34645729 | None:intergenic | 20.0% |
| !!! | TTTTTATTATTATTAGAGGG+GGG | + | chr3_2:34645915-34645934 | None:intergenic | 20.0% |
| !! | CACAAATACATGAAAAAAAT+TGG | + | chr3_2:34644097-34644116 | None:intergenic | 20.0% |
| !!! | AATTTTATATGGTTCTTGTA+TGG | + | chr3_2:34644228-34644247 | None:intergenic | 20.0% |
| !!! | TTAATGTTGGCAATTTTATA+TGG | + | chr3_2:34644239-34644258 | None:intergenic | 20.0% |
| !! | TTTGAATTGAACATAATAGT+GGG | - | chr3_2:34644496-34644515 | Msa0404000:intron | 20.0% |
| !! | TCATAAACAAAACCTTATAT+TGG | - | chr3_2:34644786-34644805 | Msa0404000:intron | 20.0% |
| !! | TTATATTGGAACATTGAAAT+GGG | - | chr3_2:34644800-34644819 | Msa0404000:intron | 20.0% |
| !!! | ATAACACTTGTTAGATTATT+TGG | - | chr3_2:34644876-34644895 | Msa0404000:intron | 20.0% |
| !!! | TAACACTTGTTAGATTATTT+GGG | - | chr3_2:34644877-34644896 | Msa0404000:intron | 20.0% |
| !!! | AATTGATTCTAAATCCATTA+TGG | + | chr3_2:34645166-34645185 | None:intergenic | 20.0% |
| !!! | GATAATTTATCTTTTTCCTT+TGG | - | chr3_2:34645204-34645223 | Msa0404000:intron | 20.0% |
| !! | ATGGAAAAAATTGATACATA+TGG | + | chr3_2:34645710-34645729 | None:intergenic | 20.0% |
| !!! | TTTTTATTATTATTAGAGGG+GGG | + | chr3_2:34645915-34645934 | None:intergenic | 20.0% |
| ! | TTTACATGGCATATTAATGT+TGG | + | chr3_2:34644252-34644271 | None:intergenic | 25.0% |
| ! | CTTTGAATTGAACATAATAG+TGG | - | chr3_2:34644495-34644514 | Msa0404000:intron | 25.0% |
| ! | GAAATTAGTAGTTGAAAGTT+TGG | - | chr3_2:34644763-34644782 | Msa0404000:intron | 25.0% |
| ! | CATTTCAATGTTCCAATATA+AGG | + | chr3_2:34644801-34644820 | None:intergenic | 25.0% |
| ! | CTTATATTGGAACATTGAAA+TGG | - | chr3_2:34644799-34644818 | Msa0404000:intron | 25.0% |
| !! | TAAGGATTGTATTTTGCAAA+TGG | + | chr3_2:34645729-34645748 | None:intergenic | 25.0% |
| !!! | CAATCCTTAGTTTTGTATAA+TGG | - | chr3_2:34645740-34645759 | Msa0404000:intron | 25.0% |
| ! | AAAGCCATTATACAAAACTA+AGG | + | chr3_2:34645747-34645766 | None:intergenic | 25.0% |
| ! | TCAGATACCTATCATATAAT+AGG | - | chr3_2:34645805-34645824 | Msa0404000:intron | 25.0% |
| ! | ACATCATCCTATTATATGAT+AGG | + | chr3_2:34645815-34645834 | None:intergenic | 25.0% |
| !!! | AGACCAAATTTCTAGTATTT+AGG | - | chr3_2:34645873-34645892 | Msa0404000:intron | 25.0% |
| ! | TTTACATGGCATATTAATGT+TGG | + | chr3_2:34644252-34644271 | None:intergenic | 25.0% |
| ! | CTTTGAATTGAACATAATAG+TGG | - | chr3_2:34644495-34644514 | Msa0404000:intron | 25.0% |
| ! | GAAATTAGTAGTTGAAAGTT+TGG | - | chr3_2:34644763-34644782 | Msa0404000:intron | 25.0% |
| ! | CATTTCAATGTTCCAATATA+AGG | + | chr3_2:34644801-34644820 | None:intergenic | 25.0% |
| ! | CTTATATTGGAACATTGAAA+TGG | - | chr3_2:34644799-34644818 | Msa0404000:intron | 25.0% |
| !! | TAAGGATTGTATTTTGCAAA+TGG | + | chr3_2:34645729-34645748 | None:intergenic | 25.0% |
| !!! | CAATCCTTAGTTTTGTATAA+TGG | - | chr3_2:34645740-34645759 | Msa0404000:intron | 25.0% |
| ! | AAAGCCATTATACAAAACTA+AGG | + | chr3_2:34645747-34645766 | None:intergenic | 25.0% |
| ! | TCAGATACCTATCATATAAT+AGG | - | chr3_2:34645805-34645824 | Msa0404000:intron | 25.0% |
| ! | ACATCATCCTATTATATGAT+AGG | + | chr3_2:34645815-34645834 | None:intergenic | 25.0% |
| !!! | AGACCAAATTTCTAGTATTT+AGG | - | chr3_2:34645873-34645892 | Msa0404000:intron | 25.0% |
| TTTCAAGCATTTCATCAAAC+AGG | + | chr3_2:34644052-34644071 | None:intergenic | 30.0% | |
| CAAATTATAGCTCGTTTACA+TGG | + | chr3_2:34644266-34644285 | None:intergenic | 30.0% | |
| !!! | GTTTTTTCTTTTTGGAAACC+CGG | + | chr3_2:34644386-34644405 | None:intergenic | 30.0% |
| CATCCTATTGCAAAATTCTT+TGG | - | chr3_2:34645324-34645343 | Msa0404000:intron | 30.0% | |
| AGATGAAAATTACTTACCAC+AGG | + | chr3_2:34645481-34645500 | None:intergenic | 30.0% | |
| ! | TTCTTTGCTCTTTTCAAAGT+TGG | + | chr3_2:34645537-34645556 | None:intergenic | 30.0% |
| !!! | CAATCCTTAGTTTTGTACAA+TGG | - | chr3_2:34645667-34645686 | Msa0404000:intron | 30.0% |
| ! | GTGATTATACAAGACTAGTT+CGG | + | chr3_2:34645852-34645871 | None:intergenic | 30.0% |
| GTGCCTAAATACTAGAAATT+TGG | + | chr3_2:34645879-34645898 | None:intergenic | 30.0% | |
| TTACAGAAAAAGTGACACAT+GGG | + | chr3_2:34646023-34646042 | None:intergenic | 30.0% | |
| ATTACAGAAAAAGTGACACA+TGG | + | chr3_2:34646024-34646043 | None:intergenic | 30.0% | |
| AACATGTTCCTTCATTATCA+GGG | + | chr3_2:34646078-34646097 | None:intergenic | 30.0% | |
| AAACATGTTCCTTCATTATC+AGG | + | chr3_2:34646079-34646098 | None:intergenic | 30.0% | |
| TTTCAAGCATTTCATCAAAC+AGG | + | chr3_2:34644052-34644071 | None:intergenic | 30.0% | |
| CAAATTATAGCTCGTTTACA+TGG | + | chr3_2:34644266-34644285 | None:intergenic | 30.0% | |
| !!! | GTTTTTTCTTTTTGGAAACC+CGG | + | chr3_2:34644386-34644405 | None:intergenic | 30.0% |
| CATCCTATTGCAAAATTCTT+TGG | - | chr3_2:34645324-34645343 | Msa0404000:intron | 30.0% | |
| AGATGAAAATTACTTACCAC+AGG | + | chr3_2:34645481-34645500 | None:intergenic | 30.0% | |
| ! | TTCTTTGCTCTTTTCAAAGT+TGG | + | chr3_2:34645537-34645556 | None:intergenic | 30.0% |
| !!! | CAATCCTTAGTTTTGTACAA+TGG | - | chr3_2:34645667-34645686 | Msa0404000:intron | 30.0% |
| ! | GTGATTATACAAGACTAGTT+CGG | + | chr3_2:34645852-34645871 | None:intergenic | 30.0% |
| GTGCCTAAATACTAGAAATT+TGG | + | chr3_2:34645879-34645898 | None:intergenic | 30.0% | |
| TTACAGAAAAAGTGACACAT+GGG | + | chr3_2:34646023-34646042 | None:intergenic | 30.0% | |
| ATTACAGAAAAAGTGACACA+TGG | + | chr3_2:34646024-34646043 | None:intergenic | 30.0% | |
| AACATGTTCCTTCATTATCA+GGG | + | chr3_2:34646078-34646097 | None:intergenic | 30.0% | |
| AAACATGTTCCTTCATTATC+AGG | + | chr3_2:34646079-34646098 | None:intergenic | 30.0% | |
| GGAAAAAACGCGTATAAAAG+TGG | + | chr3_2:34643984-34644003 | None:intergenic | 35.0% | |
| GATGAAATGCTTGAAACATG+CGG | - | chr3_2:34644056-34644075 | Msa0404000:three_prime_UTR | 35.0% | |
| ! | GATGTCTTTAGAAGCACAAA+GGG | + | chr3_2:34644123-34644142 | None:intergenic | 35.0% |
| ! | TGATGTCTTTAGAAGCACAA+AGG | + | chr3_2:34644124-34644143 | None:intergenic | 35.0% |
| TGGTTCTTGTATGGAATATC+AGG | + | chr3_2:34644219-34644238 | None:intergenic | 35.0% | |
| !! | GAAGGTTTTGGTGATTGATT+TGG | - | chr3_2:34644536-34644555 | Msa0404000:intron | 35.0% |
| TGTTTGTGCAATGTTAAAGG+AGG | + | chr3_2:34644580-34644599 | None:intergenic | 35.0% | |
| GGATGTTTGTGCAATGTTAA+AGG | + | chr3_2:34644583-34644602 | None:intergenic | 35.0% | |
| ATATTTCCATGTCCATGTCA+TGG | - | chr3_2:34644733-34644752 | Msa0404000:intron | 35.0% | |
| TATTTCCATGTCCATGTCAT+GGG | - | chr3_2:34644734-34644753 | Msa0404000:intron | 35.0% | |
| ATTTCCATTATCCCATGACA+TGG | + | chr3_2:34644748-34644767 | None:intergenic | 35.0% | |
| GAACATTGAAATGGGACTTA+GGG | - | chr3_2:34644808-34644827 | Msa0404000:intron | 35.0% | |
| AACATTGAAATGGGACTTAG+GGG | - | chr3_2:34644809-34644828 | Msa0404000:intron | 35.0% | |
| TAAGGAAATGCCAATTGACA+GGG | + | chr3_2:34645133-34645152 | None:intergenic | 35.0% | |
| ! | TCGCCAAAGAATTTTGCAAT+AGG | + | chr3_2:34645330-34645349 | None:intergenic | 35.0% |
| !! | CTTTGCTTTGAAGTTTGATC+TGG | - | chr3_2:34645451-34645470 | Msa0404000:intron | 35.0% |
| TGAAAAGAGCAAAGAACTCA+AGG | - | chr3_2:34645541-34645560 | Msa0404000:intron | 35.0% | |
| ! | AGGAACAATTGCGAGTTTTA+AGG | - | chr3_2:34645561-34645580 | Msa0404000:intron | 35.0% |
| CAGCAGTCAATAGAAATAGA+AGG | - | chr3_2:34645601-34645620 | Msa0404000:intron | 35.0% | |
| !!! | TTTGGTTTTGTGACCATACA+AGG | - | chr3_2:34645993-34646012 | Msa0404000:intron | 35.0% |
| ACATGTTCCTTCATTATCAG+GGG | + | chr3_2:34646077-34646096 | None:intergenic | 35.0% | |
| GGAAAAAACGCGTATAAAAG+TGG | + | chr3_2:34643984-34644003 | None:intergenic | 35.0% | |
| GATGAAATGCTTGAAACATG+CGG | - | chr3_2:34644056-34644075 | Msa0404000:three_prime_UTR | 35.0% | |
| ! | GATGTCTTTAGAAGCACAAA+GGG | + | chr3_2:34644123-34644142 | None:intergenic | 35.0% |
| ! | TGATGTCTTTAGAAGCACAA+AGG | + | chr3_2:34644124-34644143 | None:intergenic | 35.0% |
| TGGTTCTTGTATGGAATATC+AGG | + | chr3_2:34644219-34644238 | None:intergenic | 35.0% | |
| !! | GAAGGTTTTGGTGATTGATT+TGG | - | chr3_2:34644536-34644555 | Msa0404000:intron | 35.0% |
| TGTTTGTGCAATGTTAAAGG+AGG | + | chr3_2:34644580-34644599 | None:intergenic | 35.0% | |
| GGATGTTTGTGCAATGTTAA+AGG | + | chr3_2:34644583-34644602 | None:intergenic | 35.0% | |
| ATATTTCCATGTCCATGTCA+TGG | - | chr3_2:34644733-34644752 | Msa0404000:intron | 35.0% | |
| TATTTCCATGTCCATGTCAT+GGG | - | chr3_2:34644734-34644753 | Msa0404000:intron | 35.0% | |
| ATTTCCATTATCCCATGACA+TGG | + | chr3_2:34644748-34644767 | None:intergenic | 35.0% | |
| GAACATTGAAATGGGACTTA+GGG | - | chr3_2:34644808-34644827 | Msa0404000:intron | 35.0% | |
| AACATTGAAATGGGACTTAG+GGG | - | chr3_2:34644809-34644828 | Msa0404000:intron | 35.0% | |
| TAAGGAAATGCCAATTGACA+GGG | + | chr3_2:34645133-34645152 | None:intergenic | 35.0% | |
| ! | TCGCCAAAGAATTTTGCAAT+AGG | + | chr3_2:34645330-34645349 | None:intergenic | 35.0% |
| !! | CTTTGCTTTGAAGTTTGATC+TGG | - | chr3_2:34645451-34645470 | Msa0404000:intron | 35.0% |
| TGAAAAGAGCAAAGAACTCA+AGG | - | chr3_2:34645541-34645560 | Msa0404000:intron | 35.0% | |
| ! | AGGAACAATTGCGAGTTTTA+AGG | - | chr3_2:34645561-34645580 | Msa0404000:intron | 35.0% |
| CAGCAGTCAATAGAAATAGA+AGG | - | chr3_2:34645601-34645620 | Msa0404000:intron | 35.0% | |
| !!! | TTTGGTTTTGTGACCATACA+AGG | - | chr3_2:34645993-34646012 | Msa0404000:intron | 35.0% |
| ACATGTTCCTTCATTATCAG+GGG | + | chr3_2:34646077-34646096 | None:intergenic | 35.0% | |
| TTTCAGATGATCCTGGAGAA+GGG | + | chr3_2:34643905-34643924 | None:intergenic | 40.0% | |
| ATCAGAGTTTCAGATGATCC+TGG | + | chr3_2:34643912-34643931 | None:intergenic | 40.0% | |
| GATGCAAAATTGCGATGGAA+GGG | + | chr3_2:34643939-34643958 | None:intergenic | 40.0% | |
| AGATGCAAAATTGCGATGGA+AGG | + | chr3_2:34643940-34643959 | None:intergenic | 40.0% | |
| TACGAGATGCAAAATTGCGA+TGG | + | chr3_2:34643944-34643963 | None:intergenic | 40.0% | |
| TGATGAGCACAAACAAAGCT+TGG | + | chr3_2:34644029-34644048 | None:intergenic | 40.0% | |
| TGTGCGAACAATTCCTATGT+TGG | - | chr3_2:34644291-34644310 | Msa0404000:three_prime_UTR | 40.0% | |
| GTGCGAACAATTCCTATGTT+GGG | - | chr3_2:34644292-34644311 | Msa0404000:three_prime_UTR | 40.0% | |
| !! | AATTGGTCCTCTGGATTAGT+GGG | - | chr3_2:34644345-34644364 | Msa0404000:CDS | 40.0% |
| TCAAGACTAAAAGTAGCTGC+TGG | - | chr3_2:34644423-34644442 | Msa0404000:CDS | 40.0% | |
| TAGTGGGATAGTTGAATTGC+AGG | - | chr3_2:34644512-34644531 | Msa0404000:intron | 40.0% | |
| GATAGTTGAATTGCAGGAGA+AGG | - | chr3_2:34644518-34644537 | Msa0404000:intron | 40.0% | |
| ! | TGAATTGCAGGAGAAGGTTT+TGG | - | chr3_2:34644524-34644543 | Msa0404000:intron | 40.0% |
| ATTATCCCATGACATGGACA+TGG | + | chr3_2:34644742-34644761 | None:intergenic | 40.0% | |
| ATGTCCATGTCATGGGATAA+TGG | - | chr3_2:34644741-34644760 | Msa0404000:intron | 40.0% | |
| GGAACATTGAAATGGGACTT+AGG | - | chr3_2:34644807-34644826 | Msa0404000:intron | 40.0% | |
| AAATGGGACTTAGGGGAATA+GGG | - | chr3_2:34644816-34644835 | Msa0404000:intron | 40.0% | |
| CAATACCTCTTAGTGGCTTA+AGG | + | chr3_2:34645093-34645112 | None:intergenic | 40.0% | |
| TTATCTGTTGCCCTGTCAAT+TGG | - | chr3_2:34645120-34645139 | Msa0404000:intron | 40.0% | |
| GTAAGGAAATGCCAATTGAC+AGG | + | chr3_2:34645134-34645153 | None:intergenic | 40.0% | |
| CATTATGGAGTGCGAAAGTA+AGG | + | chr3_2:34645151-34645170 | None:intergenic | 40.0% | |
| CTTACTTTCGCACTCCATAA+TGG | - | chr3_2:34645149-34645168 | Msa0404000:intron | 40.0% | |
| CTGATAACTTTCAGCACCAA+AGG | + | chr3_2:34645223-34645242 | None:intergenic | 40.0% | |
| !! | CTTTGGTGCTGAAAGTTATC+AGG | - | chr3_2:34645221-34645240 | Msa0404000:intron | 40.0% |
| GTGCTTAATGCAGATTATCG+AGG | - | chr3_2:34645278-34645297 | Msa0404000:intron | 40.0% | |
| !!! | AGTTTGATCTGGTTTTCCTG+TGG | - | chr3_2:34645462-34645481 | Msa0404000:intron | 40.0% |
| TTCTCTTCACAGCTTTCTGT+TGG | + | chr3_2:34645511-34645530 | None:intergenic | 40.0% | |
| ACAGAAAGCTGTGAAGAGAA+AGG | - | chr3_2:34645511-34645530 | Msa0404000:intron | 40.0% | |
| CGAGCCATTGTACAAAACTA+AGG | + | chr3_2:34645674-34645693 | None:intergenic | 40.0% | |
| GTGTGCAAGCACTATACATT+TGG | - | chr3_2:34645975-34645994 | Msa0404000:intron | 40.0% | |
| TTTCAGATGATCCTGGAGAA+GGG | + | chr3_2:34643905-34643924 | None:intergenic | 40.0% | |
| ATCAGAGTTTCAGATGATCC+TGG | + | chr3_2:34643912-34643931 | None:intergenic | 40.0% | |
| GATGCAAAATTGCGATGGAA+GGG | + | chr3_2:34643939-34643958 | None:intergenic | 40.0% | |
| AGATGCAAAATTGCGATGGA+AGG | + | chr3_2:34643940-34643959 | None:intergenic | 40.0% | |
| TACGAGATGCAAAATTGCGA+TGG | + | chr3_2:34643944-34643963 | None:intergenic | 40.0% | |
| TGATGAGCACAAACAAAGCT+TGG | + | chr3_2:34644029-34644048 | None:intergenic | 40.0% | |
| TGTGCGAACAATTCCTATGT+TGG | - | chr3_2:34644291-34644310 | Msa0404000:three_prime_UTR | 40.0% | |
| GTGCGAACAATTCCTATGTT+GGG | - | chr3_2:34644292-34644311 | Msa0404000:three_prime_UTR | 40.0% | |
| !! | AATTGGTCCTCTGGATTAGT+GGG | - | chr3_2:34644345-34644364 | Msa0404000:CDS | 40.0% |
| TCAAGACTAAAAGTAGCTGC+TGG | - | chr3_2:34644423-34644442 | Msa0404000:CDS | 40.0% | |
| TAGTGGGATAGTTGAATTGC+AGG | - | chr3_2:34644512-34644531 | Msa0404000:intron | 40.0% | |
| GATAGTTGAATTGCAGGAGA+AGG | - | chr3_2:34644518-34644537 | Msa0404000:intron | 40.0% | |
| ! | TGAATTGCAGGAGAAGGTTT+TGG | - | chr3_2:34644524-34644543 | Msa0404000:intron | 40.0% |
| ATTATCCCATGACATGGACA+TGG | + | chr3_2:34644742-34644761 | None:intergenic | 40.0% | |
| ATGTCCATGTCATGGGATAA+TGG | - | chr3_2:34644741-34644760 | Msa0404000:intron | 40.0% | |
| GGAACATTGAAATGGGACTT+AGG | - | chr3_2:34644807-34644826 | Msa0404000:intron | 40.0% | |
| AAATGGGACTTAGGGGAATA+GGG | - | chr3_2:34644816-34644835 | Msa0404000:intron | 40.0% | |
| CAATACCTCTTAGTGGCTTA+AGG | + | chr3_2:34645093-34645112 | None:intergenic | 40.0% | |
| TTATCTGTTGCCCTGTCAAT+TGG | - | chr3_2:34645120-34645139 | Msa0404000:intron | 40.0% | |
| GTAAGGAAATGCCAATTGAC+AGG | + | chr3_2:34645134-34645153 | None:intergenic | 40.0% | |
| CATTATGGAGTGCGAAAGTA+AGG | + | chr3_2:34645151-34645170 | None:intergenic | 40.0% | |
| CTTACTTTCGCACTCCATAA+TGG | - | chr3_2:34645149-34645168 | Msa0404000:intron | 40.0% | |
| CTGATAACTTTCAGCACCAA+AGG | + | chr3_2:34645223-34645242 | None:intergenic | 40.0% | |
| !! | CTTTGGTGCTGAAAGTTATC+AGG | - | chr3_2:34645221-34645240 | Msa0404000:intron | 40.0% |
| GTGCTTAATGCAGATTATCG+AGG | - | chr3_2:34645278-34645297 | Msa0404000:intron | 40.0% | |
| !!! | AGTTTGATCTGGTTTTCCTG+TGG | - | chr3_2:34645462-34645481 | Msa0404000:intron | 40.0% |
| TTCTCTTCACAGCTTTCTGT+TGG | + | chr3_2:34645511-34645530 | None:intergenic | 40.0% | |
| ACAGAAAGCTGTGAAGAGAA+AGG | - | chr3_2:34645511-34645530 | Msa0404000:intron | 40.0% | |
| CGAGCCATTGTACAAAACTA+AGG | + | chr3_2:34645674-34645693 | None:intergenic | 40.0% | |
| GTGTGCAAGCACTATACATT+TGG | - | chr3_2:34645975-34645994 | Msa0404000:intron | 40.0% | |
| CCTGGAGAAGGGAAAGAAAA+TGG | + | chr3_2:34643894-34643913 | None:intergenic | 45.0% | |
| ! | CCATTTTCTTTCCCTTCTCC+AGG | - | chr3_2:34643891-34643910 | Msa0404000:three_prime_UTR | 45.0% |
| GTTTCAGATGATCCTGGAGA+AGG | + | chr3_2:34643906-34643925 | None:intergenic | 45.0% | |
| ! | TGTATGGACTGACCCAACAT+AGG | + | chr3_2:34644307-34644326 | None:intergenic | 45.0% |
| AGACAGAGCAACGTCTTGTA+TGG | + | chr3_2:34644323-34644342 | None:intergenic | 45.0% | |
| GACGTTGCTCTGTCTTCAAT+TGG | - | chr3_2:34644328-34644347 | Msa0404000:exon | 45.0% | |
| TCTGTCTTCAATTGGTCCTC+TGG | - | chr3_2:34644336-34644355 | Msa0404000:exon | 45.0% | |
| ! | CAATTGGTCCTCTGGATTAG+TGG | - | chr3_2:34644344-34644363 | Msa0404000:exon | 45.0% |
| AAACTCACTTCAGCGCACAT+AGG | + | chr3_2:34644604-34644623 | None:intergenic | 45.0% | |
| GAAATGGGACTTAGGGGAAT+AGG | - | chr3_2:34644815-34644834 | Msa0404000:intron | 45.0% | |
| ACCAAGCTGTTTACCCAAAC+AGG | - | chr3_2:34645066-34645085 | Msa0404000:intron | 45.0% | |
| CCAAGCTGTTTACCCAAACA+GGG | - | chr3_2:34645067-34645086 | Msa0404000:intron | 45.0% | |
| !! | CCACTAAGAGGTATTGCCAA+GGG | - | chr3_2:34645097-34645116 | Msa0404000:intron | 45.0% |
| !! | GGAGTTTCAGAAGTGTCATG+TGG | - | chr3_2:34645299-34645318 | Msa0404000:intron | 45.0% |
| !! | ACACATGGGTTAGCCTTGTA+TGG | + | chr3_2:34646009-34646028 | None:intergenic | 45.0% |
| ! | GATACCACCCCTGATAATGA+AGG | - | chr3_2:34646067-34646086 | Msa0404000:five_prime_UTR | 45.0% |
| TGTTCCTTCATTATCAGGGG+TGG | + | chr3_2:34646074-34646093 | None:intergenic | 45.0% | |
| CCTGGAGAAGGGAAAGAAAA+TGG | + | chr3_2:34643894-34643913 | None:intergenic | 45.0% | |
| ! | CCATTTTCTTTCCCTTCTCC+AGG | - | chr3_2:34643891-34643910 | Msa0404000:three_prime_UTR | 45.0% |
| GTTTCAGATGATCCTGGAGA+AGG | + | chr3_2:34643906-34643925 | None:intergenic | 45.0% | |
| ! | TGTATGGACTGACCCAACAT+AGG | + | chr3_2:34644307-34644326 | None:intergenic | 45.0% |
| AGACAGAGCAACGTCTTGTA+TGG | + | chr3_2:34644323-34644342 | None:intergenic | 45.0% | |
| GACGTTGCTCTGTCTTCAAT+TGG | - | chr3_2:34644328-34644347 | Msa0404000:exon | 45.0% | |
| TCTGTCTTCAATTGGTCCTC+TGG | - | chr3_2:34644336-34644355 | Msa0404000:exon | 45.0% | |
| ! | CAATTGGTCCTCTGGATTAG+TGG | - | chr3_2:34644344-34644363 | Msa0404000:exon | 45.0% |
| AAACTCACTTCAGCGCACAT+AGG | + | chr3_2:34644604-34644623 | None:intergenic | 45.0% | |
| GAAATGGGACTTAGGGGAAT+AGG | - | chr3_2:34644815-34644834 | Msa0404000:intron | 45.0% | |
| ACCAAGCTGTTTACCCAAAC+AGG | - | chr3_2:34645066-34645085 | Msa0404000:intron | 45.0% | |
| CCAAGCTGTTTACCCAAACA+GGG | - | chr3_2:34645067-34645086 | Msa0404000:intron | 45.0% | |
| !! | CCACTAAGAGGTATTGCCAA+GGG | - | chr3_2:34645097-34645116 | Msa0404000:intron | 45.0% |
| !! | GGAGTTTCAGAAGTGTCATG+TGG | - | chr3_2:34645299-34645318 | Msa0404000:intron | 45.0% |
| !! | ACACATGGGTTAGCCTTGTA+TGG | + | chr3_2:34646009-34646028 | None:intergenic | 45.0% |
| ! | GATACCACCCCTGATAATGA+AGG | - | chr3_2:34646067-34646086 | Msa0404000:five_prime_UTR | 45.0% |
| TGTTCCTTCATTATCAGGGG+TGG | + | chr3_2:34646074-34646093 | None:intergenic | 45.0% | |
| !!! | AAATTTTTATTATTATTAGA+GGG | + | chr3_2:34645918-34645937 | None:intergenic | 5.0% |
| !!! | TAAATTTTTATTATTATTAG+AGG | + | chr3_2:34645919-34645938 | None:intergenic | 5.0% |
| !!! | AAATTTTTATTATTATTAGA+GGG | + | chr3_2:34645918-34645937 | None:intergenic | 5.0% |
| !!! | TAAATTTTTATTATTATTAG+AGG | + | chr3_2:34645919-34645938 | None:intergenic | 5.0% |
| ! | GGATTAGTGGGTCCTTGGAT+TGG | - | chr3_2:34644357-34644376 | Msa0404000:CDS | 50.0% |
| ! | TGGGTCCTTGGATTGGATAC+CGG | - | chr3_2:34644364-34644383 | Msa0404000:CDS | 50.0% |
| GAAACCCGGTATCCAATCCA+AGG | + | chr3_2:34644372-34644391 | None:intergenic | 50.0% | |
| CCCTGTTTGGGTAAACAGCT+TGG | + | chr3_2:34645070-34645089 | None:intergenic | 50.0% | |
| AGTGGCTTAAGGCCCTGTTT+GGG | + | chr3_2:34645082-34645101 | None:intergenic | 50.0% | |
| TAGTGGCTTAAGGCCCTGTT+TGG | + | chr3_2:34645083-34645102 | None:intergenic | 50.0% | |
| !! | GCCACTAAGAGGTATTGCCA+AGG | - | chr3_2:34645096-34645115 | Msa0404000:intron | 50.0% |
| CCCTTGGCAATACCTCTTAG+TGG | + | chr3_2:34645100-34645119 | None:intergenic | 50.0% | |
| ACAGGGCAACAGATAACCCT+TGG | + | chr3_2:34645116-34645135 | None:intergenic | 50.0% | |
| ! | GGATTAGTGGGTCCTTGGAT+TGG | - | chr3_2:34644357-34644376 | Msa0404000:CDS | 50.0% |
| ! | TGGGTCCTTGGATTGGATAC+CGG | - | chr3_2:34644364-34644383 | Msa0404000:CDS | 50.0% |
| GAAACCCGGTATCCAATCCA+AGG | + | chr3_2:34644372-34644391 | None:intergenic | 50.0% | |
| CCCTGTTTGGGTAAACAGCT+TGG | + | chr3_2:34645070-34645089 | None:intergenic | 50.0% | |
| AGTGGCTTAAGGCCCTGTTT+GGG | + | chr3_2:34645082-34645101 | None:intergenic | 50.0% | |
| TAGTGGCTTAAGGCCCTGTT+TGG | + | chr3_2:34645083-34645102 | None:intergenic | 50.0% | |
| !! | GCCACTAAGAGGTATTGCCA+AGG | - | chr3_2:34645096-34645115 | Msa0404000:intron | 50.0% |
| CCCTTGGCAATACCTCTTAG+TGG | + | chr3_2:34645100-34645119 | None:intergenic | 50.0% | |
| ACAGGGCAACAGATAACCCT+TGG | + | chr3_2:34645116-34645135 | None:intergenic | 50.0% | |
| CCAAGGACCCACTAATCCAG+AGG | + | chr3_2:34644355-34644374 | None:intergenic | 55.0% | |
| !! | CCTCTGGATTAGTGGGTCCT+TGG | - | chr3_2:34644352-34644371 | Msa0404000:CDS | 55.0% |
| ! | GGGTCCTTGGATTGGATACC+GGG | - | chr3_2:34644365-34644384 | Msa0404000:CDS | 55.0% |
| CAGGGCCTTAAGCCACTAAG+AGG | - | chr3_2:34645085-34645104 | Msa0404000:intron | 55.0% | |
| CCAAGGACCCACTAATCCAG+AGG | + | chr3_2:34644355-34644374 | None:intergenic | 55.0% | |
| !! | CCTCTGGATTAGTGGGTCCT+TGG | - | chr3_2:34644352-34644371 | Msa0404000:CDS | 55.0% |
| ! | GGGTCCTTGGATTGGATACC+GGG | - | chr3_2:34644365-34644384 | Msa0404000:CDS | 55.0% |
| CAGGGCCTTAAGCCACTAAG+AGG | - | chr3_2:34645085-34645104 | Msa0404000:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_2 | gene | 34643856 | 34646102 | 34643856 | ID=Msa0404000;Name=Msa0404000 |
| chr3_2 | mRNA | 34643856 | 34646102 | 34643856 | ID=Msa0404000-mRNA-1;Parent=Msa0404000;Name=Msa0404000-mRNA-1;_AED=0.01;_eAED=0.01;_QI=153|1|1|1|0.66|0.5|4|489|82 |
| chr3_2 | exon | 34643856 | 34644443 | 34643856 | ID=Msa0404000-mRNA-1:exon:7051;Parent=Msa0404000-mRNA-1 |
| chr3_2 | exon | 34644563 | 34644667 | 34644563 | ID=Msa0404000-mRNA-1:exon:7050;Parent=Msa0404000-mRNA-1 |
| chr3_2 | exon | 34645343 | 34645435 | 34645343 | ID=Msa0404000-mRNA-1:exon:7049;Parent=Msa0404000-mRNA-1 |
| chr3_2 | exon | 34645998 | 34646102 | 34645998 | ID=Msa0404000-mRNA-1:exon:7048;Parent=Msa0404000-mRNA-1 |
| chr3_2 | five_prime_UTR | 34645998 | 34646102 | 34645998 | ID=Msa0404000-mRNA-1:five_prime_utr;Parent=Msa0404000-mRNA-1 |
| chr3_2 | five_prime_UTR | 34645388 | 34645435 | 34645388 | ID=Msa0404000-mRNA-1:five_prime_utr;Parent=Msa0404000-mRNA-1 |
| chr3_2 | CDS | 34645343 | 34645387 | 34645343 | ID=Msa0404000-mRNA-1:cds;Parent=Msa0404000-mRNA-1 |
| chr3_2 | CDS | 34644563 | 34644667 | 34644563 | ID=Msa0404000-mRNA-1:cds;Parent=Msa0404000-mRNA-1 |
| chr3_2 | CDS | 34644345 | 34644443 | 34644345 | ID=Msa0404000-mRNA-1:cds;Parent=Msa0404000-mRNA-1 |
| chr3_2 | three_prime_UTR | 34643856 | 34644344 | 34643856 | ID=Msa0404000-mRNA-1:three_prime_utr;Parent=Msa0404000-mRNA-1 |
| Gene Sequence |
| Protein sequence |
