AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1417830

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1417830 MtrunA17_Chr3g0135621 97.521 605 15 0 1 605 1 605 0.0 1134
Msa1417830 MtrunA17_Chr3g0135631 96.278 403 15 0 203 605 1 403 0.0 714
Msa1417830 MtrunA17_Chr1g0151761 61.252 671 150 19 1 605 1 627 0.0 597
Msa1417830 MtrunA17_Chr3g0135641 98.942 189 2 0 1 189 1 189 1.45e-131 383
Msa1417830 MtrunA17_Chr3g0135641 46.377 69 34 2 182 249 90 156 7.70e-13 67.8
Msa1417830 MtrunA17_Chr5g0396111 56.069 173 72 1 82 250 181 353 6.54e-58 198
Msa1417830 MtrunA17_Chr7g0217251 27.010 311 153 16 68 346 141 409 5.24e-12 68.9
Msa1417830 MtrunA17_Chr1g0197441 29.032 217 123 6 89 291 39 238 1.06e-11 66.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1417830 AT2G25970.1 53.546 564 181 21 26 553 66 584 2.72e-130 396
Msa1417830 AT1G33680.1 35.739 568 246 27 86 599 232 734 2.79e-56 203
Msa1417830 AT4G10070.1 44.961 258 124 7 82 328 172 422 3.03e-52 191
Msa1417830 AT5G04430.2 30.288 208 125 7 89 289 38 232 1.21e-13 72.8
Msa1417830 AT5G04430.1 31.548 168 102 4 89 253 38 195 2.82e-12 68.6

Find 266 sgRNAs with CRISPR-Local

Find 425 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCCATGCCATTTGCAGAATT+TGG 0.156164 tig0024530:+29872 Msa1417830:three_prime_UTR
TCTAGCCAGGCCCCGCCTTC+TGG 0.193239 tig0024530:+28541 Msa1417830:CDS
GGTAGGGTTGGTGTTCTTAT+TGG 0.218158 tig0024530:+25090 Msa1417830:CDS
TTCTACCGGGGCACGAATTC+AGG 0.220193 tig0024530:+26435 Msa1417830:CDS
GGAACTTCGCAGTTCATTTC+AGG 0.227165 tig0024530:-29852 None:intergenic
GACTAGGATGGTTGAACTTA+TGG 0.236098 tig0024530:+25203 Msa1417830:CDS
CATAGATGTTGCTATCAAAA+TGG 0.245666 tig0024530:-28854 None:intergenic
CAGAATCGTCTCAGAAATTC+AGG 0.249484 tig0024530:+27731 Msa1417830:intron
CAGTAGTGGGTTGGGAAGTT+TGG 0.252253 tig0024530:-28300 None:intergenic
CTCCTCCTTTACCGATTATA+AGG 0.263800 tig0024530:-26390 None:intergenic
TAGGCTGAAGCTGGGGCTTC+TGG 0.266896 tig0024530:+26195 Msa1417830:intron
TAATGGTTATTATCGTCCTT+TGG 0.283838 tig0024530:+28807 Msa1417830:three_prime_UTR
GGTTGGTAGCATAGCCTTGC+TGG 0.287848 tig0024530:-28327 None:intergenic
TTCACTTTCTTCCTCTCTAT+AGG 0.289785 tig0024530:+24775 Msa1417830:five_prime_UTR
ATTACTCCCACTGCCATAAC+TGG 0.291727 tig0024530:-28227 None:intergenic
CTCTATAGGGTTTGTTTCAA+TGG 0.295151 tig0024530:+24789 Msa1417830:exon
AGACGGATGGTTGCACAATC+TGG 0.309169 tig0024530:+26228 Msa1417830:CDS
ACCATCCTAGTCTGAGAATT+AGG 0.309685 tig0024530:-25192 None:intergenic
CTTTCTGTTGATGTATCACC+TGG 0.313635 tig0024530:-26646 None:intergenic
TCACTTTCTTCCTCTCTATA+GGG 0.320093 tig0024530:+24776 Msa1417830:five_prime_UTR
TCTCCCCACACCTTATTGTT+TGG 0.320962 tig0024530:-26276 None:intergenic
AGTAGTGGGTTGGGAAGTTT+GGG 0.330555 tig0024530:-28299 None:intergenic
TCATATGGAAATAGTTCTTA+TGG 0.338429 tig0024530:+28676 Msa1417830:CDS
GAAACTCCTCAACCAGGTTA+TGG 0.345359 tig0024530:+28355 Msa1417830:CDS
CTTTAGGTTGGCCTTATAAT+CGG 0.348223 tig0024530:+26379 Msa1417830:intron
GACTGACCATAGCCTCCTGC+TGG 0.350562 tig0024530:-28508 None:intergenic
TATAATGCGCAACAACAATC+TGG 0.353841 tig0024530:+28154 Msa1417830:CDS
CCGGTGGATATTCCGCCAAC+TGG 0.354362 tig0024530:+27933 Msa1417830:CDS
AACCTCCTTCCTCTGGTTAT+AGG 0.356288 tig0024530:+28092 Msa1417830:CDS
TTTGCTGTTGCTGGGGTTGT+TGG 0.358645 tig0024530:-28018 None:intergenic
GTTATCGGACTTGGTTCGTT+TGG 0.360575 tig0024530:-24968 None:intergenic
ACCGTGGAATAAATGTTAAA+AGG 0.360683 tig0024530:+29899 Msa1417830:three_prime_UTR
AACTTCTTGAGCTCGTTGTT+TGG 0.361408 tig0024530:-24896 None:intergenic
GAAGCTGGGGCTTCTGGCGG+TGG 0.361827 tig0024530:+26201 Msa1417830:CDS
AGTGCAAATCCACCTGCTTA+TGG 0.362303 tig0024530:+28466 Msa1417830:CDS
TTTGCTGATTCAATTTGATC+AGG 0.363459 tig0024530:-26691 None:intergenic
AATGGTTATTATCGTCCTTT+GGG 0.363624 tig0024530:+28808 Msa1417830:three_prime_UTR
AGTTGGAAGTGTGCCCCTCT+TGG 0.365119 tig0024530:-28255 None:intergenic
GATTCAAGTTACTCGTGATA+TGG 0.369842 tig0024530:+25161 Msa1417830:CDS
GTGTGGGAAGGAGTTGGATT+AGG 0.370858 tig0024530:-24746 None:intergenic
CCATAGGCCGCTTGGGAGGT+AGG 0.372582 tig0024530:-28385 None:intergenic
TTTATTAACTAGGCTGAAGC+TGG 0.373039 tig0024530:+26186 Msa1417830:intron
GAGGGGCACACTTCCAACTA+TGG 0.374400 tig0024530:+28259 Msa1417830:CDS
CCTGCACAACAAGCTGGTTA+TGG 0.376085 tig0024530:+27824 Msa1417830:CDS
GATGCAAATACCAAACAATA+AGG 0.377129 tig0024530:+26266 Msa1417830:CDS
TTATCGGACTTGGTTCGTTT+GGG 0.378392 tig0024530:-24967 None:intergenic
TGGTTATAGGCAACCTGGAC+AGG 0.386233 tig0024530:+28105 Msa1417830:CDS
GAGTTCGATGTCCGTGGCGG+TGG 0.387307 tig0024530:-24860 None:intergenic
AAACTCCTCAACCAGGTTAT+GGG 0.389331 tig0024530:+28356 Msa1417830:CDS
TGTTGCTGATCATATGTTTG+TGG 0.391746 tig0024530:-28187 None:intergenic
GGTCCTCCACAGCCAGCTGA+TGG 0.395783 tig0024530:+28049 Msa1417830:CDS
GTTGGTGTTCTTATTGGTAA+AGG 0.399271 tig0024530:+25096 Msa1417830:CDS
TGGAGCACCGTTATCGGACT+TGG 0.399369 tig0024530:-24977 None:intergenic
CCTACCTCCCAAGCGGCCTA+TGG 0.399491 tig0024530:+28385 Msa1417830:CDS
TTCCATATGACGGTGGAGTC+TGG 0.403625 tig0024530:-28663 None:intergenic
CCCCAGCAACAGCAAAATCC+TGG 0.404109 tig0024530:+28025 Msa1417830:CDS
AGTCAACCACAGTCTGGTTA+TGG 0.407882 tig0024530:+28409 Msa1417830:CDS
GGCCAGACTCCACCGTCATA+TGG 0.410070 tig0024530:+28661 Msa1417830:CDS
TATGATCAGCAACAAGGTTA+TGG 0.411167 tig0024530:+28196 Msa1417830:CDS
AACTGCACAGGCTGTTCCAC+AGG 0.415355 tig0024530:+28741 Msa1417830:CDS
AATCCCGACCACCGTCTAGC+TGG 0.415564 tig0024530:+27786 Msa1417830:CDS
CATAGGCCGCTTGGGAGGTA+GGG 0.417451 tig0024530:-28384 None:intergenic
CATATCCAGAAGGCGGGGCC+TGG 0.418708 tig0024530:-28546 None:intergenic
ACTAGGATGGTTGAACTTAT+GGG 0.418819 tig0024530:+25204 Msa1417830:CDS
GCTTGTTGTGCAGGAGCAGC+AGG 0.419616 tig0024530:-27815 None:intergenic
TCTGGTTATGGACCTGGTTA+TGG 0.421938 tig0024530:+28421 Msa1417830:CDS
CTGGTTGAGGAGTTTCTTGT+TGG 0.423458 tig0024530:-28348 None:intergenic
TATGGCTCTGCTCCCAGTTA+TGG 0.425707 tig0024530:+28214 Msa1417830:CDS
AGGCAACCTGGACAGGGTTA+TGG 0.428875 tig0024530:+28112 Msa1417830:CDS
CCATAGCCTCCTGCTGGGCT+AGG 0.435681 tig0024530:-28502 None:intergenic
CTGGGCAACAGTAGTGGGTT+GGG 0.439592 tig0024530:-28308 None:intergenic
CAACAAGCTGGTTATGGCTA+TGG 0.440407 tig0024530:+27830 Msa1417830:CDS
TATTATCGTCCTTTGGGATG+TGG 0.443967 tig0024530:+28814 Msa1417830:three_prime_UTR
CGATTGTGGAGCACCGTTAT+CGG 0.444219 tig0024530:-24983 None:intergenic
GACGGATGGTTGCACAATCT+GGG 0.446354 tig0024530:+26229 Msa1417830:CDS
CGATAACGGTGCTCCACAAT+CGG 0.446619 tig0024530:+24984 Msa1417830:CDS
TTTGATAGCAACATCTATGT+TGG 0.448394 tig0024530:+28858 Msa1417830:three_prime_UTR
GAGTCTGGCCATAGCTAGGC+TGG 0.448899 tig0024530:-28648 None:intergenic
ATAGATGTTGCTATCAAAAT+GGG 0.453719 tig0024530:-28853 None:intergenic
GTTGACTTCCATAGGCCGCT+TGG 0.454305 tig0024530:-28393 None:intergenic
AGCCCAGCTAGACGGTGGTC+GGG 0.454864 tig0024530:-27789 None:intergenic
CCATAACCAGCTTGTTGTGC+AGG 0.455611 tig0024530:-27824 None:intergenic
TTGACTTCCATAGGCCGCTT+GGG 0.461597 tig0024530:-28392 None:intergenic
AGCTAGACGGTGGTCGGGAT+TGG 0.461750 tig0024530:-27784 None:intergenic
AATTGAATCAGCAAAGCAAT+TGG 0.464801 tig0024530:+26699 Msa1417830:CDS
AAGTATCTTCAGATGCAATC+TGG 0.464861 tig0024530:+25132 Msa1417830:CDS
GTCCTCCACAGCCAGCTGAT+GGG 0.465554 tig0024530:+28050 Msa1417830:CDS
AGAACACCAACCCTACCATT+AGG 0.466222 tig0024530:-25084 None:intergenic
AGAAGGCGGGGCCTGGCTAG+AGG 0.466470 tig0024530:-28539 None:intergenic
TCCTGACCATAACCCTGTCC+AGG 0.466770 tig0024530:-28118 None:intergenic
TACAGTCAACCTCCTTCCTC+TGG 0.467231 tig0024530:+28085 Msa1417830:CDS
GATAACGGTGCTCCACAATC+GGG 0.467332 tig0024530:+24985 Msa1417830:CDS
GTTGGAAGTGTGCCCCTCTT+GGG 0.469268 tig0024530:-28254 None:intergenic
TTGCTGATTCAATTTGATCA+GGG 0.472599 tig0024530:-26690 None:intergenic
TCGCAGCAAGGTGGTAGTTA+TGG 0.474269 tig0024530:+25039 Msa1417830:CDS
AAGAAGATTGAAATACCTAA+TGG 0.476293 tig0024530:+25069 Msa1417830:CDS
GACCCATCAGCTGGCTGTGG+AGG 0.477036 tig0024530:-28052 None:intergenic
GAAGTGTGCCCCTCTTGGGT+TGG 0.479594 tig0024530:-28250 None:intergenic
TTATGGTGCTAGTTATGCTC+AGG 0.481239 tig0024530:+28693 Msa1417830:CDS
GAAGGCGGGGCCTGGCTAGA+GGG 0.486048 tig0024530:-28538 None:intergenic
GGGTATGGTCCGCAATCATA+TGG 0.486408 tig0024530:+28610 Msa1417830:CDS
GGTTATGGCTATGGGCAACC+TGG 0.488138 tig0024530:+27839 Msa1417830:CDS
CCTAGCCCAGCAGGAGGCTA+TGG 0.490924 tig0024530:+28502 Msa1417830:CDS
AAGAGTATGCAAGCTTCTAC+CGG 0.492893 tig0024530:+26421 Msa1417830:CDS
GCTGAGCATATCCAGAAGGC+GGG 0.493910 tig0024530:-28552 None:intergenic
ACCTGGACAGGGTTATGGTC+AGG 0.497241 tig0024530:+28117 Msa1417830:CDS
CTTCTGGCGGTGGCACTAGA+CGG 0.497957 tig0024530:+26211 Msa1417830:CDS
GATGGACCAGAGTATGATCC+AGG 0.501151 tig0024530:-27857 None:intergenic
TCACAGTCACCTAGCCCAGC+AGG 0.505105 tig0024530:+28493 Msa1417830:CDS
TTCTGTTGATGTATCACCTG+GGG 0.507849 tig0024530:-26644 None:intergenic
CCCAGCAACAGCAAAATCCT+GGG 0.508607 tig0024530:+28026 Msa1417830:CDS
GTTGGTAGCATAGCCTTGCT+GGG 0.508853 tig0024530:-28326 None:intergenic
CTGCTCCCAGTTATGGCAGT+GGG 0.512052 tig0024530:+28221 Msa1417830:CDS
GTTGCACCAAATTCTGCAAA+TGG 0.512812 tig0024530:-29878 None:intergenic
TTGAGGAGTTTCTTGTTGGT+TGG 0.513013 tig0024530:-28344 None:intergenic
TATGGAAGTCAACCACAGTC+TGG 0.513429 tig0024530:+28403 Msa1417830:CDS
CACGATGTGCTACTGAGACT+TGG 0.516654 tig0024530:-24714 None:intergenic
TGCTGATTCAATTTGATCAG+GGG 0.517465 tig0024530:-26689 None:intergenic
ATCTGCTTGTGATCCATAGT+TGG 0.518728 tig0024530:-28272 None:intergenic
CTTGGTTCGTTTGGGATCGT+AGG 0.519590 tig0024530:-24959 None:intergenic
GAAATACCTAATGGTAGGGT+TGG 0.520361 tig0024530:+25078 Msa1417830:CDS
GTTGGCCTTATAATCGGTAA+AGG 0.521991 tig0024530:+26385 Msa1417830:CDS
GCTCTCTGAGTGCCTAACTC+TGG 0.522190 tig0024530:-28574 None:intergenic
CCAGTTGGCGGAATATCCAC+CGG 0.522965 tig0024530:-27933 None:intergenic
CAAGGTGGCCAGCCTAGCTA+TGG 0.524469 tig0024530:+28640 Msa1417830:CDS
TCAGCAGAAGAAACAGCGTC+AGG 0.524572 tig0024530:-25231 None:intergenic
ATAGGCCGCTTGGGAGGTAG+GGG 0.527994 tig0024530:-28383 None:intergenic
GCCTTGCTGGGCAACAGTAG+TGG 0.528254 tig0024530:-28314 None:intergenic
GCACCAGTGCAACCAGGGTA+TGG 0.529757 tig0024530:+28595 Msa1417830:CDS
AGTTCGATGTCCGTGGCGGT+GGG 0.530955 tig0024530:-24859 None:intergenic
ATCCCGACCACCGTCTAGCT+GGG 0.531596 tig0024530:+27787 Msa1417830:CDS
AACAAGCTGGTTATGGCTAT+GGG 0.531625 tig0024530:+27831 Msa1417830:CDS
AGTCGATTGGTCCCAGTTGG+CGG 0.531961 tig0024530:-27945 None:intergenic
TATCCACCGGGTTGCTGAGG+AGG 0.532429 tig0024530:-27920 None:intergenic
TCCTCTGGTTATAGGCAACC+TGG 0.532856 tig0024530:+28100 Msa1417830:CDS
GTCAGCATATCCCTCTAGCC+AGG 0.533284 tig0024530:+28528 Msa1417830:CDS
GAGCCCAGCTAGACGGTGGT+CGG 0.534258 tig0024530:-27790 None:intergenic
GGTGGAGTCTGGCCATAGCT+AGG 0.535763 tig0024530:-28652 None:intergenic
GGTGTTCTTATTGGTAAAGG+AGG 0.535918 tig0024530:+25099 Msa1417830:CDS
GCAGACCCATCAGCTGGCTG+TGG 0.536196 tig0024530:-28055 None:intergenic
GCTGAAGCTGGGGCTTCTGG+CGG 0.536744 tig0024530:+26198 Msa1417830:CDS
GGATATGCTCAGCCAGAGTT+AGG 0.536855 tig0024530:+28562 Msa1417830:CDS
GCAGGAGGAGCCCAGCTAGA+CGG 0.538714 tig0024530:-27797 None:intergenic
TTATTAACTAGGCTGAAGCT+GGG 0.541792 tig0024530:+26187 Msa1417830:intron
GCTGCTCCTGCACAACAAGC+TGG 0.542982 tig0024530:+27818 Msa1417830:CDS
TCTGCTCCCAGTTATGGCAG+TGG 0.543356 tig0024530:+28220 Msa1417830:CDS
ATGCCTCAGCCACCATATGC+AGG 0.544233 tig0024530:+27893 Msa1417830:CDS
AGAGTATGCAAGCTTCTACC+GGG 0.546430 tig0024530:+26422 Msa1417830:CDS
GCTGGGCAACAGTAGTGGGT+TGG 0.546458 tig0024530:-28309 None:intergenic
GCTCGTCTTCTCAGCGTCAC+CGG 0.548114 tig0024530:+24922 Msa1417830:CDS
TTTCTGTTGATGTATCACCT+GGG 0.548846 tig0024530:-26645 None:intergenic
CTGATCCTAATTCTCAGACT+AGG 0.549418 tig0024530:+25187 Msa1417830:CDS
TGAGGAGGATAGCCTGCATA+TGG 0.549695 tig0024530:-27905 None:intergenic
CAGAGAGCACCAGTGCAACC+AGG 0.550434 tig0024530:+28589 Msa1417830:CDS
TAAGCAGGTGGATTTGCACT+TGG 0.550457 tig0024530:-28463 None:intergenic
TAGCGATGGAGCAACTGCAC+AGG 0.553254 tig0024530:+28729 Msa1417830:CDS
AACACGGTGTGGGAAGGAGT+TGG 0.553845 tig0024530:-24752 None:intergenic
TAGCCTGCATATGGTGGCTG+AGG 0.553849 tig0024530:-27896 None:intergenic
GGACCATACCCTGGTTGCAC+TGG 0.555058 tig0024530:-28598 None:intergenic
GGCTATCCTCCTCAGCAACC+CGG 0.555442 tig0024530:+27914 Msa1417830:CDS
AGTGGGTTGGGAAGTTTGGG+AGG 0.555622 tig0024530:-28296 None:intergenic
AGATTGAAATACCTAATGGT+AGG 0.556097 tig0024530:+25073 Msa1417830:CDS
AAACGAACCAAGTCCGATAA+CGG 0.556846 tig0024530:+24970 Msa1417830:CDS
TTGGTTAATCAAATCCTCAC+TGG 0.558998 tig0024530:+26718 Msa1417830:CDS
CCACAGTCTGGTTATGGACC+TGG 0.560474 tig0024530:+28415 Msa1417830:CDS
GCGCAACAACAATCTGGGTA+TGG 0.561377 tig0024530:+28160 Msa1417830:CDS
CGGTGGATATTCCGCCAACT+GGG 0.563001 tig0024530:+27934 Msa1417830:CDS
GAGGGAGGAGCACCATAACC+AGG 0.563328 tig0024530:-28433 None:intergenic
CTCAGAAATTCAGGGAACTC+AGG 0.566464 tig0024530:+27740 Msa1417830:CDS
GCTCCATCGCTAGCATACGC+TGG 0.567046 tig0024530:-28718 None:intergenic
CTGTATGCAGACCCATCAGC+TGG 0.570591 tig0024530:-28061 None:intergenic
CTTAACAGTACTGAGAGATA+CGG 0.570905 tig0024530:+29789 Msa1417830:intron
CACTTGCATGAGTAGACTGC+TGG 0.572808 tig0024530:-27979 None:intergenic
TAAGAATCAAACCCCGATTG+TGG 0.574402 tig0024530:-24997 None:intergenic
TAGCTAGGCTGGCCACCTTG+AGG 0.574664 tig0024530:-28637 None:intergenic
GTAGGAGAGTGGTGGAGCGC+CGG 0.574920 tig0024530:-24941 None:intergenic
CCTTGCTGGGCAACAGTAGT+GGG 0.574987 tig0024530:-28313 None:intergenic
AGAATCGTCTCAGAAATTCA+GGG 0.575702 tig0024530:+27732 Msa1417830:intron
GGGAGTAATCCAACCCAAGA+GGG 0.576300 tig0024530:+28241 Msa1417830:CDS
ACTGACCATAGCCTCCTGCT+GGG 0.577432 tig0024530:-28507 None:intergenic
GGCTGAGCATATCCAGAAGG+CGG 0.579823 tig0024530:-28553 None:intergenic
GCTCCAGCGTATGCTAGCGA+TGG 0.580238 tig0024530:+28715 Msa1417830:CDS
GGCATGTTATACTGCGGTGA+TGG 0.581623 tig0024530:-27875 None:intergenic
CAATCATATGGTGCTCCTCA+AGG 0.582124 tig0024530:+28622 Msa1417830:CDS
GAATATCCACCGGGTTGCTG+AGG 0.583120 tig0024530:-27923 None:intergenic
TGAGTAGACTGCTGGTGAGA+TGG 0.584276 tig0024530:-27971 None:intergenic
GCTACCCCATAACCTGGTTG+AGG 0.585519 tig0024530:-28361 None:intergenic
GATTGAAATACCTAATGGTA+GGG 0.585821 tig0024530:+25074 Msa1417830:CDS
AGCAGTCGATTGGTCCCAGT+TGG 0.586343 tig0024530:-27948 None:intergenic
TGCAGAATTTGGTGCAACCG+TGG 0.587337 tig0024530:+29883 Msa1417830:three_prime_UTR
GGGCAACCTGGATCATACTC+TGG 0.588895 tig0024530:+27851 Msa1417830:CDS
ACCAAATTCTGCAAATGGCA+TGG 0.589272 tig0024530:-29873 None:intergenic
TGGCGGTGGCACTAGACGGA+TGG 0.589779 tig0024530:+26215 Msa1417830:CDS
CCCACTACTGTTGCCCAGCA+AGG 0.593544 tig0024530:+28313 Msa1417830:CDS
GGTTATAGGCAACCTGGACA+GGG 0.595134 tig0024530:+28106 Msa1417830:CDS
TTACTCCCACTGCCATAACT+GGG 0.595665 tig0024530:-28226 None:intergenic
AACTCCTCAACCAGGTTATG+GGG 0.596098 tig0024530:+28357 Msa1417830:CDS
ATAATGCGCAACAACAATCT+GGG 0.598425 tig0024530:+28155 Msa1417830:CDS
CGTTTGGGATCGTAGGAGAG+TGG 0.599323 tig0024530:-24952 None:intergenic
ACGGATGGTTGCACAATCTG+GGG 0.600123 tig0024530:+26230 Msa1417830:CDS
TAGTAAGTAAAACAGTCCCT+AGG 0.602675 tig0024530:+28988 Msa1417830:three_prime_UTR
AGTGAAAACACGGTGTGGGA+AGG 0.605750 tig0024530:-24758 None:intergenic
TGTTGTGCAGGAGCAGCAGG+AGG 0.605854 tig0024530:-27812 None:intergenic
GACTGTGATTGACCATAAGC+AGG 0.606917 tig0024530:-28478 None:intergenic
GAAAACCTGAATTCGTGCCC+CGG 0.608473 tig0024530:-26440 None:intergenic
TCCTAATTCTCAGACTAGGA+TGG 0.609354 tig0024530:+25191 Msa1417830:CDS
CAGTTGGCGGAATATCCACC+GGG 0.609806 tig0024530:-27932 None:intergenic
GGTGAGATGGAGCAGTCGAT+TGG 0.609946 tig0024530:-27958 None:intergenic
CCACCTTGCTGCGAGTATTG+CGG 0.611213 tig0024530:-25030 None:intergenic
GAGTATGCAAGCTTCTACCG+GGG 0.611864 tig0024530:+26423 Msa1417830:CDS
TAAGAACTATTTCCATATGA+CGG 0.615919 tig0024530:-28673 None:intergenic
CATCAATGAAGTCCTTGCTG+AGG 0.616712 tig0024530:+25260 Msa1417830:CDS
GGTTATGGTCAGGAAAGCTA+TGG 0.616846 tig0024530:+28127 Msa1417830:CDS
TTGGGATCGTAGGAGAGTGG+TGG 0.618282 tig0024530:-24949 None:intergenic
GTAGGGGCTACCCCATAACC+TGG 0.621045 tig0024530:-28367 None:intergenic
AGAAAGTGAAAACACGGTGT+GGG 0.622964 tig0024530:-24762 None:intergenic
CAGCAGTCTACTCATGCAAG+TGG 0.623206 tig0024530:+27980 Msa1417830:CDS
GGAGGAGCCCAGCTAGACGG+TGG 0.623688 tig0024530:-27794 None:intergenic
AGACTGTGGTTGACTTCCAT+AGG 0.624998 tig0024530:-28401 None:intergenic
TAATCAAATCCTCACTGGTG+AGG 0.625790 tig0024530:+26723 Msa1417830:CDS
TCTGTTGATGTATCACCTGG+GGG 0.627155 tig0024530:-26643 None:intergenic
ACTTCCATAGGCCGCTTGGG+AGG 0.629551 tig0024530:-28389 None:intergenic
GGAGGATAGCCTGCATATGG+TGG 0.632205 tig0024530:-27902 None:intergenic
TATAGGGTTTGTTTCAATGG+CGG 0.632326 tig0024530:+24792 Msa1417830:exon
TATGATTGCGGACCATACCC+TGG 0.632611 tig0024530:-28607 None:intergenic
TTGAAACAAACCCTATAGAG+AGG 0.634104 tig0024530:-24786 None:intergenic
GGCCTTATAATCGGTAAAGG+AGG 0.635849 tig0024530:+26388 Msa1417830:CDS
GACTTCGAGTTCGATGTCCG+TGG 0.636506 tig0024530:-24866 None:intergenic
TCAGGTGGTTATACTCAGCA+AGG 0.636998 tig0024530:+27758 Msa1417830:CDS
CAACAAGAAACTCCTCAACC+AGG 0.638274 tig0024530:+28349 Msa1417830:CDS
CAAACATATGATCAGCAACA+AGG 0.642194 tig0024530:+28190 Msa1417830:CDS
TATTAACTAGGCTGAAGCTG+GGG 0.642830 tig0024530:+26188 Msa1417830:intron
CGATGAACAACCCACCGCCA+CGG 0.645490 tig0024530:+24849 Msa1417830:CDS
AAGAAAGTGAAAACACGGTG+TGG 0.646849 tig0024530:-24763 None:intergenic
AAGCCGCAATACTCGCAGCA+AGG 0.647111 tig0024530:+25027 Msa1417830:CDS
GATGTTGCTATCAAAATGGG+AGG 0.647415 tig0024530:-28850 None:intergenic
GGTTGCCTATAACCAGAGGA+AGG 0.649293 tig0024530:-28097 None:intergenic
AGAGAGCACCAGTGCAACCA+GGG 0.650050 tig0024530:+28590 Msa1417830:CDS
ACTGCACAGGCTGTTCCACA+GGG 0.651647 tig0024530:+28742 Msa1417830:CDS
CTGAGCATATCCAGAAGGCG+GGG 0.654248 tig0024530:-28551 None:intergenic
TCCAGGTTGCCTATAACCAG+AGG 0.654374 tig0024530:-28101 None:intergenic
TCTGGCTGAGCATATCCAGA+AGG 0.655491 tig0024530:-28556 None:intergenic
AAATTAAAACCACATCCCAA+AGG 0.657609 tig0024530:-28823 None:intergenic
AGAAATTCAGGGAACTCAGG+TGG 0.665666 tig0024530:+27743 Msa1417830:CDS
TGCCTATAACCAGAGGAAGG+AGG 0.666033 tig0024530:-28094 None:intergenic
CGGATGGTTGCACAATCTGG+GGG 0.666739 tig0024530:+26231 Msa1417830:CDS
CCAGCAACAGCAAAATCCTG+GGG 0.670269 tig0024530:+28027 Msa1417830:CDS
AGAGGAAGAAAGTGAAAACA+CGG 0.674928 tig0024530:-24768 None:intergenic
TGAGGAGCACCATATGATTG+CGG 0.676376 tig0024530:-28619 None:intergenic
TTCGAGTTCGATGTCCGTGG+CGG 0.677834 tig0024530:-24863 None:intergenic
CAGTCACCTAGCCCAGCAGG+AGG 0.679822 tig0024530:+28496 Msa1417830:CDS
TGGGAGTAATCCAACCCAAG+AGG 0.681350 tig0024530:+28240 Msa1417830:CDS
ATAACGGTGCTCCACAATCG+GGG 0.686584 tig0024530:+24986 Msa1417830:CDS
GGAGTAATCCAACCCAAGAG+GGG 0.687207 tig0024530:+28242 Msa1417830:CDS
CCGCAATACTCGCAGCAAGG+TGG 0.697265 tig0024530:+25030 Msa1417830:CDS
ACTTTAGCAACACTGCCCTG+TGG 0.699397 tig0024530:-28757 None:intergenic
TCATATGGTGCTCCTCAAGG+TGG 0.706407 tig0024530:+28625 Msa1417830:CDS
GAACTATTTCCATATGACGG+TGG 0.711749 tig0024530:-28670 None:intergenic
TGTGATTGACCATAAGCAGG+TGG 0.719303 tig0024530:-28475 None:intergenic
TATCCTCCTCAGCAACCCGG+TGG 0.720805 tig0024530:+27917 Msa1417830:CDS
GGTGACGCTGAGAAGACGAG+CGG 0.728767 tig0024530:-24920 None:intergenic
CCAGGTCCATAACCAGACTG+TGG 0.734270 tig0024530:-28415 None:intergenic
CAGCAACAGCAAAATCCTGG+GGG 0.736266 tig0024530:+28028 Msa1417830:CDS
GGTAGCCCCTACCTCCCAAG+CGG 0.739424 tig0024530:+28378 Msa1417830:CDS
GGCTGAGGCATGTTATACTG+CGG 0.750903 tig0024530:-27881 None:intergenic
GATAACATACCTCACCAGTG+AGG 0.751081 tig0024530:-26732 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAATTATGACTAATTTTTAT+TGG + tig0024530:27580-27599 Msa1417830:intron 10.0%
!!! TTTTTTTATACTCTTGTTTA+CGG + tig0024530:25286-25305 Msa1417830:intron 15.0%
!! ATATTGGTAAAAAGTTAAAA+CGG - tig0024530:26590-26609 None:intergenic 15.0%
!!! AATTTTAAACTTAAGAGATT+TGG - tig0024530:26806-26825 None:intergenic 15.0%
!!! ATCTCTTAAGTTTAAAATTA+TGG + tig0024530:26807-26826 Msa1417830:intron 15.0%
!!! TCTCTTAAGTTTAAAATTAT+GGG + tig0024530:26808-26827 Msa1417830:intron 15.0%
!!! TTATAATCATGTTTAGTTTT+AGG + tig0024530:26832-26851 Msa1417830:intron 15.0%
!! ACAATTACCTTATAAAATTA+TGG + tig0024530:26877-26896 Msa1417830:intron 15.0%
!!! AAATGAATAACAATTTTGTA+GGG - tig0024530:26919-26938 None:intergenic 15.0%
!!! AAAATGAATAACAATTTTGT+AGG - tig0024530:26920-26939 None:intergenic 15.0%
!! TTAAAATATTTCTTATCGTT+GGG + tig0024530:27236-27255 Msa1417830:intron 15.0%
!!! TTTTTTCAAGAAAAATATCA+AGG + tig0024530:29344-29363 Msa1417830:intron 15.0%
!! TAATCAATGATATTTCACTA+AGG - tig0024530:25480-25499 None:intergenic 20.0%
!!! TGAAATACATTTTTACTAAC+AGG - tig0024530:25973-25992 None:intergenic 20.0%
!! TATATTATAGTTACAGAATC+AGG - tig0024530:26081-26100 None:intergenic 20.0%
!! AAAGAACATTAAAAATCGAT+GGG + tig0024530:26665-26684 Msa1417830:CDS 20.0%
!!! ACACAATTTTTTGTTTTATC+TGG + tig0024530:26756-26775 Msa1417830:intron 20.0%
!!! AAAAGGTCCATAATTTTATA+AGG - tig0024530:26887-26906 None:intergenic 20.0%
!! CTTAAAATATTTCTTATCGT+TGG + tig0024530:27235-27254 Msa1417830:intron 20.0%
!!! AAAGTCACTTTCAATTATAA+TGG + tig0024530:27359-27378 Msa1417830:intron 20.0%
!!! CTTCGTATATTTTTATGTTT+TGG + tig0024530:27661-27680 Msa1417830:intron 20.0%
!!! AGTTGATTTTTCTTTTGTAA+TGG + tig0024530:28790-28809 Msa1417830:exon 20.0%
!! GGAGAAAAAGATTATATAAA+AGG + tig0024530:29085-29104 Msa1417830:intron 20.0%
!!! TCTGTTTTTAAAAATGAAAG+TGG + tig0024530:29146-29165 Msa1417830:intron 20.0%
!!! ACTTTTATACATTAAACTGA+AGG - tig0024530:29630-29649 None:intergenic 20.0%
!!! CATTTTTTCTACAATCTATA+TGG + tig0024530:29740-29759 Msa1417830:intron 20.0%
! AAGAAGATTGAAATACCTAA+TGG + tig0024530:25069-25088 Msa1417830:CDS 25.0%
! ATAAAAAAAAAACCTCAGCA+AGG - tig0024530:25275-25294 None:intergenic 25.0%
! GTGATTTCAAAACATGAATT+GGG - tig0024530:25446-25465 None:intergenic 25.0%
! TACTCAAATGATGTTCAAAT+TGG + tig0024530:25591-25610 Msa1417830:intron 25.0%
! TAAATATGCTCAAATGATGT+TGG + tig0024530:26115-26134 Msa1417830:intron 25.0%
!!! ATACGTGTTGTTTATTAACT+AGG + tig0024530:26176-26195 Msa1417830:intron 25.0%
!!! TGTTTTGTTTATTCTCGTTT+GGG + tig0024530:26333-26352 Msa1417830:intron 25.0%
! GAAAGAACATTAAAAATCGA+TGG + tig0024530:26664-26683 Msa1417830:CDS 25.0%
!!! TTTATCTGGCTTATCATTTT+TGG + tig0024530:26770-26789 Msa1417830:intron 25.0%
! TCAACAAGTCAAAATTCAAA+AGG - tig0024530:27067-27086 None:intergenic 25.0%
!!! ATTTCATAGTTTGTTTAAGC+TGG + tig0024530:27410-27429 Msa1417830:intron 25.0%
!! CTAATTTTTATTGGCATCAA+TGG + tig0024530:27589-27608 Msa1417830:intron 25.0%
! AATAGATGTACACATATAAC+GGG - tig0024530:27640-27659 None:intergenic 25.0%
! CAATAGATGTACACATATAA+CGG - tig0024530:27641-27660 None:intergenic 25.0%
!!! ATTTTTATGTTTTGGTACGT+TGG + tig0024530:27669-27688 Msa1417830:intron 25.0%
!!! TTTTTATGTTTTGGTACGTT+GGG + tig0024530:27670-27689 Msa1417830:intron 25.0%
! TAAGAACTATTTCCATATGA+CGG - tig0024530:28676-28695 None:intergenic 25.0%
! TCATATGGAAATAGTTCTTA+TGG + tig0024530:28676-28695 Msa1417830:CDS 25.0%
! CAAAAGAAAAATCAACTCTT+GGG - tig0024530:28787-28806 None:intergenic 25.0%
! ACAAAAGAAAAATCAACTCT+TGG - tig0024530:28788-28807 None:intergenic 25.0%
! ATAGATGTTGCTATCAAAAT+GGG - tig0024530:28856-28875 None:intergenic 25.0%
!!! TTATTTTCTACTGCTGTTTT+CGG + tig0024530:28907-28926 Msa1417830:three_prime_UTR 25.0%
!!! TCTGATTGTGTTTTTTCATT+TGG + tig0024530:29212-29231 Msa1417830:intron 25.0%
! TAATGATGTCTATTGTTCTT+AGG + tig0024530:29508-29527 Msa1417830:intron 25.0%
! TTGTAGAAAAAATGACCTAA+AGG - tig0024530:29734-29753 None:intergenic 25.0%
!!! TTCTTTTGAAATGAGAGATA+CGG - tig0024530:29823-29842 None:intergenic 25.0%
AGATTGAAATACCTAATGGT+AGG + tig0024530:25073-25092 Msa1417830:CDS 30.0%
GATTGAAATACCTAATGGTA+GGG + tig0024530:25074-25093 Msa1417830:CDS 30.0%
TACTGTAATTCTTACTAGTC+AGG + tig0024530:25341-25360 Msa1417830:intron 30.0%
ACTGTAATTCTTACTAGTCA+GGG + tig0024530:25342-25361 Msa1417830:intron 30.0%
GGTGATTTCAAAACATGAAT+TGG - tig0024530:25447-25466 None:intergenic 30.0%
TTTCACTAAGGTAACAGTTA+CGG - tig0024530:25468-25487 None:intergenic 30.0%
! CTGATTTGATAACTGTTGTA+TGG + tig0024530:25513-25532 Msa1417830:intron 30.0%
CTCAAATGATGTTTCAATGA+CGG + tig0024530:25689-25708 Msa1417830:intron 30.0%
TCTAATCTTGCACAATTTCA+TGG + tig0024530:25807-25826 Msa1417830:intron 30.0%
TTGGTGAAACATTCACTAAT+AGG + tig0024530:25862-25881 Msa1417830:intron 30.0%
GATGCAAATACCAAACAATA+AGG + tig0024530:26266-26285 Msa1417830:CDS 30.0%
AAATACCAAACAATAAGGTG+TGG + tig0024530:26271-26290 Msa1417830:intron 30.0%
AATACCAAACAATAAGGTGT+GGG + tig0024530:26272-26291 Msa1417830:intron 30.0%
!!! GTGTTTTGTTTATTCTCGTT+TGG + tig0024530:26332-26351 Msa1417830:intron 30.0%
GGTAAAAAGTTAAAACGGAT+AGG - tig0024530:26585-26604 None:intergenic 30.0%
CCTGAAAAAATTGACGATAT+TGG - tig0024530:26606-26625 None:intergenic 30.0%
!!! CCAATATCGTCAATTTTTTC+AGG + tig0024530:26603-26622 Msa1417830:intron 30.0%
!! TTGCTGATTCAATTTGATCA+GGG - tig0024530:26693-26712 None:intergenic 30.0%
!! TTTGCTGATTCAATTTGATC+AGG - tig0024530:26694-26713 None:intergenic 30.0%
AATTGAATCAGCAAAGCAAT+TGG + tig0024530:26699-26718 Msa1417830:CDS 30.0%
! CTCCACCTTTTGTAAAAATA+AGG + tig0024530:26945-26964 Msa1417830:intron 30.0%
!!! CACCTTATTTTTACAAAAGG+TGG - tig0024530:26950-26969 None:intergenic 30.0%
!!! GAGCACCTTATTTTTACAAA+AGG - tig0024530:26953-26972 None:intergenic 30.0%
TGAGTTATCATGGTTTCATT+TGG - tig0024530:27004-27023 None:intergenic 30.0%
!!! CAAAGTGCTGTCTAATTTTA+TGG - tig0024530:27103-27122 None:intergenic 30.0%
TCATATGCTCAACTTTCATT+CGG + tig0024530:27259-27278 Msa1417830:intron 30.0%
!!! ATTCGGTTTAGTTTTATCCT+TGG + tig0024530:27276-27295 Msa1417830:intron 30.0%
!!! TTCGGTTTAGTTTTATCCTT+GGG + tig0024530:27277-27296 Msa1417830:intron 30.0%
ATTGAAAGTGACTTTAACGT+AGG - tig0024530:27354-27373 None:intergenic 30.0%
AGGATTGTTTCAATGTACTT+GGG + tig0024530:27463-27482 Msa1417830:intron 30.0%
TAATGGTTATTATCGTCCTT+TGG + tig0024530:28807-28826 Msa1417830:three_prime_UTR 30.0%
AATGGTTATTATCGTCCTTT+GGG + tig0024530:28808-28827 Msa1417830:three_prime_UTR 30.0%
AAATTAAAACCACATCCCAA+AGG - tig0024530:28826-28845 None:intergenic 30.0%
CATAGATGTTGCTATCAAAA+TGG - tig0024530:28857-28876 None:intergenic 30.0%
! TTTGATAGCAACATCTATGT+TGG + tig0024530:28858-28877 Msa1417830:three_prime_UTR 30.0%
AAAAACAGAGTCATAAACAG+AGG - tig0024530:29135-29154 None:intergenic 30.0%
! CTCAACTTTAGTTCATGATT+GGG - tig0024530:29282-29301 None:intergenic 30.0%
! ACTCAACTTTAGTTCATGAT+TGG - tig0024530:29283-29302 None:intergenic 30.0%
AAGAAAAATATCAAGGAGTG+TGG + tig0024530:29351-29370 Msa1417830:intron 30.0%
! AGAAAAATATCAAGGAGTGT+GGG + tig0024530:29352-29371 Msa1417830:intron 30.0%
ACAATAGACATCATTACCTA+GGG - tig0024530:29504-29523 None:intergenic 30.0%
AACAATAGACATCATTACCT+AGG - tig0024530:29505-29524 None:intergenic 30.0%
! TGTTGTCTTCTCTAATTTTC+TGG + tig0024530:29682-29701 Msa1417830:intron 30.0%
AAATGACCTAAAGGTGAAAA+TGG - tig0024530:29725-29744 None:intergenic 30.0%
ACCGTGGAATAAATGTTAAA+AGG + tig0024530:29899-29918 Msa1417830:three_prime_UTR 30.0%
! GCCTTTTAACATTTATTCCA+CGG - tig0024530:29903-29922 None:intergenic 30.0%
AGAGGAAGAAAGTGAAAACA+CGG - tig0024530:24771-24790 None:intergenic 35.0%
TTCACTTTCTTCCTCTCTAT+AGG + tig0024530:24775-24794 Msa1417830:five_prime_UTR 35.0%
TCACTTTCTTCCTCTCTATA+GGG + tig0024530:24776-24795 Msa1417830:five_prime_UTR 35.0%
TTGAAACAAACCCTATAGAG+AGG - tig0024530:24789-24808 None:intergenic 35.0%
! CTCTATAGGGTTTGTTTCAA+TGG + tig0024530:24789-24808 Msa1417830:exon 35.0%
! TATAGGGTTTGTTTCAATGG+CGG + tig0024530:24792-24811 Msa1417830:exon 35.0%
! TTCATCGTACTTGCGTTTTA+GGG - tig0024530:24836-24855 None:intergenic 35.0%
! GTTGGTGTTCTTATTGGTAA+AGG + tig0024530:25096-25115 Msa1417830:CDS 35.0%
AAGTATCTTCAGATGCAATC+TGG + tig0024530:25132-25151 Msa1417830:CDS 35.0%
! GATTCAAGTTACTCGTGATA+TGG + tig0024530:25161-25180 Msa1417830:CDS 35.0%
ACTAGGATGGTTGAACTTAT+GGG + tig0024530:25204-25223 Msa1417830:CDS 35.0%
CTGTTGTATGGAGTTTCAAT+AGG + tig0024530:25525-25544 Msa1417830:intron 35.0%
CAGTCAGATACAACAAAATC+AGG - tig0024530:25628-25647 None:intergenic 35.0%
TGATGTTTCAATGACGGTAA+AGG + tig0024530:25695-25714 Msa1417830:intron 35.0%
ATGACTGTAACTTTACCTCT+TGG + tig0024530:25843-25862 Msa1417830:intron 35.0%
TTAGTGAATGTTTCACCAAG+AGG - tig0024530:25861-25880 None:intergenic 35.0%
AAAACACCTCTTATCAGTGA+TGG - tig0024530:26056-26075 None:intergenic 35.0%
TGCTCAAATGATGTTGGAAT+TGG + tig0024530:26121-26140 Msa1417830:intron 35.0%
TTTATTAACTAGGCTGAAGC+TGG + tig0024530:26186-26205 Msa1417830:intron 35.0%
TTATTAACTAGGCTGAAGCT+GGG + tig0024530:26187-26206 Msa1417830:intron 35.0%
ATACCAAACAATAAGGTGTG+GGG + tig0024530:26273-26292 Msa1417830:intron 35.0%
GGTTTCTTGTGTGAATCTTT+AGG + tig0024530:26363-26382 Msa1417830:intron 35.0%
TCTTGTGTGAATCTTTAGGT+TGG + tig0024530:26367-26386 Msa1417830:intron 35.0%
!! CTTTAGGTTGGCCTTATAAT+CGG + tig0024530:26379-26398 Msa1417830:intron 35.0%
TTTCTGTTGATGTATCACCT+GGG - tig0024530:26648-26667 None:intergenic 35.0%
!! TGCTGATTCAATTTGATCAG+GGG - tig0024530:26692-26711 None:intergenic 35.0%
TTGGTTAATCAAATCCTCAC+TGG + tig0024530:26718-26737 Msa1417830:CDS 35.0%
!!! TCTGGCTTATCATTTTTGGT+TGG + tig0024530:26774-26793 Msa1417830:intron 35.0%
TTGTAGGGACTAAAGTCAAA+AGG - tig0024530:26904-26923 None:intergenic 35.0%
!! AGGTGCTCATATTTTTACAG+TGG + tig0024530:26965-26984 Msa1417830:intron 35.0%
CAAACAAAATCTAACAGCCA+GGG - tig0024530:27157-27176 None:intergenic 35.0%
TCAAACAAAATCTAACAGCC+AGG - tig0024530:27158-27177 None:intergenic 35.0%
AATCGACAGAAACACACAAA+TGG - tig0024530:27198-27217 None:intergenic 35.0%
GAGGATTGTTTCAATGTACT+TGG + tig0024530:27462-27481 Msa1417830:intron 35.0%
GGATTGTTTCAATGTACTTG+GGG + tig0024530:27464-27483 Msa1417830:intron 35.0%
TGAAGTACGGTCTGTATATT+TGG + tig0024530:27492-27511 Msa1417830:intron 35.0%
TTTCCCATACTTGCTCTTTA+GGG + tig0024530:27521-27540 Msa1417830:intron 35.0%
TATTGGCATCAATGGAAATG+AGG + tig0024530:27597-27616 Msa1417830:intron 35.0%
AGAATCGTCTCAGAAATTCA+GGG + tig0024530:27732-27751 Msa1417830:intron 35.0%
TATAATGCGCAACAACAATC+TGG + tig0024530:28154-28173 Msa1417830:CDS 35.0%
ATAATGCGCAACAACAATCT+GGG + tig0024530:28155-28174 Msa1417830:CDS 35.0%
TGTTGCTGATCATATGTTTG+TGG - tig0024530:28190-28209 None:intergenic 35.0%
CAAACATATGATCAGCAACA+AGG + tig0024530:28190-28209 Msa1417830:CDS 35.0%
TATGATCAGCAACAAGGTTA+TGG + tig0024530:28196-28215 Msa1417830:CDS 35.0%
TAGTAAGTAAAACAGTCCCT+AGG + tig0024530:28988-29007 Msa1417830:three_prime_UTR 35.0%
! GTTCAGTTTTACAAGCAAGA+AGG + tig0024530:29055-29074 Msa1417830:intron 35.0%
TTGCTTCTTTGAATTCCAAC+CGG - tig0024530:29249-29268 None:intergenic 35.0%
GGAATTCAAAGAAGCAAGAA+CGG + tig0024530:29252-29271 Msa1417830:intron 35.0%
AAATAGATGAGGTCAATGCT+TGG + tig0024530:29319-29338 Msa1417830:intron 35.0%
TAGTAAGTAAAACAGTCCCT+AGG + tig0024530:28988-29007 Msa1417830:three_prime_UTR 35.0%
! CTTAACAGTACTGAGAGATA+CGG + tig0024530:29789-29808 Msa1417830:intron 35.0%
AGAAAGTGAAAACACGGTGT+GGG - tig0024530:24765-24784 None:intergenic 40.0%
AAGAAAGTGAAAACACGGTG+TGG - tig0024530:24766-24785 None:intergenic 40.0%
! GTTCATCGTACTTGCGTTTT+AGG - tig0024530:24837-24856 None:intergenic 40.0%
AACTTCTTGAGCTCGTTGTT+TGG - tig0024530:24899-24918 None:intergenic 40.0%
! TTATCGGACTTGGTTCGTTT+GGG - tig0024530:24970-24989 None:intergenic 40.0%
AAACGAACCAAGTCCGATAA+CGG + tig0024530:24970-24989 Msa1417830:CDS 40.0%
TAAGAATCAAACCCCGATTG+TGG - tig0024530:25000-25019 None:intergenic 40.0%
GAAATACCTAATGGTAGGGT+TGG + tig0024530:25078-25097 Msa1417830:CDS 40.0%
GGTGTTCTTATTGGTAAAGG+AGG + tig0024530:25099-25118 Msa1417830:CDS 40.0%
CTGATCCTAATTCTCAGACT+AGG + tig0024530:25187-25206 Msa1417830:CDS 40.0%
TCCTAATTCTCAGACTAGGA+TGG + tig0024530:25191-25210 Msa1417830:CDS 40.0%
ACCATCCTAGTCTGAGAATT+AGG - tig0024530:25195-25214 None:intergenic 40.0%
GACTAGGATGGTTGAACTTA+TGG + tig0024530:25203-25222 Msa1417830:CDS 40.0%
TATTAACTAGGCTGAAGCTG+GGG + tig0024530:26188-26207 Msa1417830:intron 40.0%
GAGAAAATATATCCAGCTGC+AGG + tig0024530:26295-26314 Msa1417830:intron 40.0%
! TATTCTCGTTTGGGTTCATG+TGG + tig0024530:26342-26361 Msa1417830:intron 40.0%
!! GTTGGCCTTATAATCGGTAA+AGG + tig0024530:26385-26404 Msa1417830:CDS 40.0%
! CTCCTCCTTTACCGATTATA+AGG - tig0024530:26393-26412 None:intergenic 40.0%
! AAGAGTATGCAAGCTTCTAC+CGG + tig0024530:26421-26440 Msa1417830:CDS 40.0%
AAATCCAAGTCATGAGAGTC+GGG - tig0024530:26562-26581 None:intergenic 40.0%
GAAATCCAAGTCATGAGAGT+CGG - tig0024530:26563-26582 None:intergenic 40.0%
TTCTGTTGATGTATCACCTG+GGG - tig0024530:26647-26666 None:intergenic 40.0%
CTTTCTGTTGATGTATCACC+TGG - tig0024530:26649-26668 None:intergenic 40.0%
TAATCAAATCCTCACTGGTG+AGG + tig0024530:26723-26742 Msa1417830:CDS 40.0%
GAAACCATGATAACTCAGAC+TGG + tig0024530:27007-27026 Msa1417830:intron 40.0%
ATGTCTCTATTTATGTGCCC+TGG + tig0024530:27137-27156 Msa1417830:intron 40.0%
! TTTAAGCTGGCCTGTTAGAT+TGG + tig0024530:27423-27442 Msa1417830:intron 40.0%
! TTAAGCTGGCCTGTTAGATT+GGG + tig0024530:27424-27443 Msa1417830:intron 40.0%
GTTTCCCATACTTGCTCTTT+AGG + tig0024530:27520-27539 Msa1417830:intron 40.0%
ACTCCCTAAAGAGCAAGTAT+GGG - tig0024530:27527-27546 None:intergenic 40.0%
TACTCCCTAAAGAGCAAGTA+TGG - tig0024530:27528-27547 None:intergenic 40.0%
!!! GGGCGAGCATTTTTAATTTG+TGG + tig0024530:27690-27709 Msa1417830:intron 40.0%
CAGAATCGTCTCAGAAATTC+AGG + tig0024530:27731-27750 Msa1417830:intron 40.0%
AACAAGCTGGTTATGGCTAT+GGG + tig0024530:27831-27850 Msa1417830:CDS 40.0%
ATCTGCTTGTGATCCATAGT+TGG - tig0024530:28275-28294 None:intergenic 40.0%
TTGAGGAGTTTCTTGTTGGT+TGG - tig0024530:28347-28366 None:intergenic 40.0%
AAACTCCTCAACCAGGTTAT+GGG + tig0024530:28356-28375 Msa1417830:CDS 40.0%
!! TTTGCACTTGGCTTTTGAGA+GGG - tig0024530:28454-28473 None:intergenic 40.0%
!! ATTTGCACTTGGCTTTTGAG+AGG - tig0024530:28455-28474 None:intergenic 40.0%
GAACTATTTCCATATGACGG+TGG - tig0024530:28673-28692 None:intergenic 40.0%
! TTATGGTGCTAGTTATGCTC+AGG + tig0024530:28693-28712 Msa1417830:CDS 40.0%
!! TATTATCGTCCTTTGGGATG+TGG + tig0024530:28814-28833 Msa1417830:three_prime_UTR 40.0%
GATGTTGCTATCAAAATGGG+AGG - tig0024530:28853-28872 None:intergenic 40.0%
AGTAAAACAGTCCCTAGGTA+AGG + tig0024530:28993-29012 Msa1417830:intron 40.0%
TACAAGCAAGAAGGAGAAGA+AGG + tig0024530:29064-29083 Msa1417830:intron 40.0%
TCATTTGGTTGTGTTGTGTC+CGG + tig0024530:29227-29246 Msa1417830:intron 40.0%
! ACCTCATCTATTTGTTGCAG+CGG - tig0024530:29312-29331 None:intergenic 40.0%
CAGTCTTACAAGCAAGCTTA+TGG + tig0024530:29578-29597 Msa1417830:intron 40.0%
TTACAAGCAAGCTTATGGCT+TGG + tig0024530:29583-29602 Msa1417830:intron 40.0%
! TCTCCACCATTTTCACCTTT+AGG + tig0024530:29716-29735 Msa1417830:intron 40.0%
TGACCTAAAGGTGAAAATGG+TGG - tig0024530:29722-29741 None:intergenic 40.0%
! TCCATGCCATTTGCAGAATT+TGG + tig0024530:29872-29891 Msa1417830:three_prime_UTR 40.0%
ACCAAATTCTGCAAATGGCA+TGG - tig0024530:29876-29895 None:intergenic 40.0%
GTTGCACCAAATTCTGCAAA+TGG - tig0024530:29881-29900 None:intergenic 40.0%
! GTTATCGGACTTGGTTCGTT+TGG - tig0024530:24971-24990 None:intergenic 45.0%
AGAACACCAACCCTACCATT+AGG - tig0024530:25087-25106 None:intergenic 45.0%
!! GGTAGGGTTGGTGTTCTTAT+TGG + tig0024530:25090-25109 Msa1417830:CDS 45.0%
CATCAATGAAGTCCTTGCTG+AGG + tig0024530:25260-25279 Msa1417830:CDS 45.0%
GTGCAACCATCACTGATAAG+AGG + tig0024530:26047-26066 Msa1417830:intron 45.0%
TCTCCCCACACCTTATTGTT+TGG - tig0024530:26279-26298 None:intergenic 45.0%
! GGCCTTATAATCGGTAAAGG+AGG + tig0024530:26388-26407 Msa1417830:CDS 45.0%
AGAGTATGCAAGCTTCTACC+GGG + tig0024530:26422-26441 Msa1417830:CDS 45.0%
TCTGTTGATGTATCACCTGG+GGG - tig0024530:26646-26665 None:intergenic 45.0%
GATAACATACCTCACCAGTG+AGG - tig0024530:26735-26754 None:intergenic 45.0%
GTCTCCAGTCTGAGTTATCA+TGG - tig0024530:27014-27033 None:intergenic 45.0%
! GACAGCACTTTGAAGACTCT+TGG + tig0024530:27111-27130 Msa1417830:intron 45.0%
TTCCCTCAACCCAATCTAAC+AGG - tig0024530:27436-27455 None:intergenic 45.0%
!! TGTTAGATTGGGTTGAGGGA+AGG + tig0024530:27435-27454 Msa1417830:intron 45.0%
ACTTGGGGCTTAGTGAAGTA+CGG + tig0024530:27479-27498 Msa1417830:intron 45.0%
CTCAGAAATTCAGGGAACTC+AGG + tig0024530:27740-27759 Msa1417830:CDS 45.0%
AGAAATTCAGGGAACTCAGG+TGG + tig0024530:27743-27762 Msa1417830:CDS 45.0%
TCAGGTGGTTATACTCAGCA+AGG + tig0024530:27758-27777 Msa1417830:CDS 45.0%
CAACAAGCTGGTTATGGCTA+TGG + tig0024530:27830-27849 Msa1417830:CDS 45.0%
AACCTCCTTCCTCTGGTTAT+AGG + tig0024530:28092-28111 Msa1417830:CDS 45.0%
GGTTATGGTCAGGAAAGCTA+TGG + tig0024530:28127-28146 Msa1417830:CDS 45.0%
TTACTCCCACTGCCATAACT+GGG - tig0024530:28229-28248 None:intergenic 45.0%
ATTACTCCCACTGCCATAAC+TGG - tig0024530:28230-28249 None:intergenic 45.0%
!! AGTAGTGGGTTGGGAAGTTT+GGG - tig0024530:28302-28321 None:intergenic 45.0%
CTGGTTGAGGAGTTTCTTGT+TGG - tig0024530:28351-28370 None:intergenic 45.0%
CAACAAGAAACTCCTCAACC+AGG + tig0024530:28349-28368 Msa1417830:CDS 45.0%
GAAACTCCTCAACCAGGTTA+TGG + tig0024530:28355-28374 Msa1417830:CDS 45.0%
AACTCCTCAACCAGGTTATG+GGG + tig0024530:28357-28376 Msa1417830:CDS 45.0%
! AGACTGTGGTTGACTTCCAT+AGG - tig0024530:28404-28423 None:intergenic 45.0%
TATGGAAGTCAACCACAGTC+TGG + tig0024530:28403-28422 Msa1417830:CDS 45.0%
AGTCAACCACAGTCTGGTTA+TGG + tig0024530:28409-28428 Msa1417830:CDS 45.0%
TCTGGTTATGGACCTGGTTA+TGG + tig0024530:28421-28440 Msa1417830:CDS 45.0%
! TAAGCAGGTGGATTTGCACT+TGG - tig0024530:28466-28485 None:intergenic 45.0%
AGTGCAAATCCACCTGCTTA+TGG + tig0024530:28466-28485 Msa1417830:CDS 45.0%
TGTGATTGACCATAAGCAGG+TGG - tig0024530:28478-28497 None:intergenic 45.0%
GACTGTGATTGACCATAAGC+AGG - tig0024530:28481-28500 None:intergenic 45.0%
!! TGAGGAGCACCATATGATTG+CGG - tig0024530:28622-28641 None:intergenic 45.0%
CAATCATATGGTGCTCCTCA+AGG + tig0024530:28622-28641 Msa1417830:CDS 45.0%
GCACTAGTCATCCTTACCTA+GGG - tig0024530:29007-29026 None:intergenic 45.0%
AGCACTAGTCATCCTTACCT+AGG - tig0024530:29008-29027 None:intergenic 45.0%
CGCTTTCTGCATAATCTAGG+AGG - tig0024530:29175-29194 None:intergenic 45.0%
! CGTCGCTTTCTGCATAATCT+AGG - tig0024530:29178-29197 None:intergenic 45.0%
ACCGCTGCAACAAATAGATG+AGG + tig0024530:29308-29327 Msa1417830:intron 45.0%
GGAACTTCGCAGTTCATTTC+AGG - tig0024530:29855-29874 None:intergenic 45.0%
GTGTGGGAAGGAGTTGGATT+AGG - tig0024530:24749-24768 None:intergenic 50.0%
AGTGAAAACACGGTGTGGGA+AGG - tig0024530:24761-24780 None:intergenic 50.0%
! CTTGGTTCGTTTGGGATCGT+AGG - tig0024530:24962-24981 None:intergenic 50.0%
!! CGATTGTGGAGCACCGTTAT+CGG - tig0024530:24986-25005 None:intergenic 50.0%
! CGATAACGGTGCTCCACAAT+CGG + tig0024530:24984-25003 Msa1417830:CDS 50.0%
! GATAACGGTGCTCCACAATC+GGG + tig0024530:24985-25004 Msa1417830:CDS 50.0%
ATAACGGTGCTCCACAATCG+GGG + tig0024530:24986-25005 Msa1417830:CDS 50.0%
TCGCAGCAAGGTGGTAGTTA+TGG + tig0024530:25039-25058 Msa1417830:CDS 50.0%
TCAGCAGAAGAAACAGCGTC+AGG - tig0024530:25234-25253 None:intergenic 50.0%
AGACGGATGGTTGCACAATC+TGG + tig0024530:26228-26247 Msa1417830:CDS 50.0%
GACGGATGGTTGCACAATCT+GGG + tig0024530:26229-26248 Msa1417830:CDS 50.0%
ACGGATGGTTGCACAATCTG+GGG + tig0024530:26230-26249 Msa1417830:CDS 50.0%
GAGTATGCAAGCTTCTACCG+GGG + tig0024530:26423-26442 Msa1417830:CDS 50.0%
GAAAACCTGAATTCGTGCCC+CGG - tig0024530:26443-26462 None:intergenic 50.0%
ACTGGAGACTGCAGTAGCTA+TGG + tig0024530:27025-27044 Msa1417830:intron 50.0%
GTAGATGAGCACAAGTCCCA+AGG - tig0024530:27296-27315 None:intergenic 50.0%
! TGGCCTGTTAGATTGGGTTG+AGG + tig0024530:27430-27449 Msa1417830:intron 50.0%
!! GGCCTGTTAGATTGGGTTGA+GGG + tig0024530:27431-27450 Msa1417830:intron 50.0%
!! CCATAACCAGCTTGTTGTGC+AGG - tig0024530:27827-27846 None:intergenic 50.0%
CCTGCACAACAAGCTGGTTA+TGG + tig0024530:27824-27843 Msa1417830:CDS 50.0%
GATGGACCAGAGTATGATCC+AGG - tig0024530:27860-27879 None:intergenic 50.0%
GGCATGTTATACTGCGGTGA+TGG - tig0024530:27878-27897 None:intergenic 50.0%
GGCTGAGGCATGTTATACTG+CGG - tig0024530:27884-27903 None:intergenic 50.0%
TGAGGAGGATAGCCTGCATA+TGG - tig0024530:27908-27927 None:intergenic 50.0%
TGAGTAGACTGCTGGTGAGA+TGG - tig0024530:27974-27993 None:intergenic 50.0%
CACTTGCATGAGTAGACTGC+TGG - tig0024530:27982-28001 None:intergenic 50.0%
CAGCAGTCTACTCATGCAAG+TGG + tig0024530:27980-27999 Msa1417830:CDS 50.0%
!! TTTGCTGTTGCTGGGGTTGT+TGG - tig0024530:28021-28040 None:intergenic 50.0%
!!! CCAGGATTTTGCTGTTGCTG+GGG - tig0024530:28028-28047 None:intergenic 50.0%
!!! CCCAGGATTTTGCTGTTGCT+GGG - tig0024530:28029-28048 None:intergenic 50.0%
CCCAGCAACAGCAAAATCCT+GGG + tig0024530:28026-28045 Msa1417830:CDS 50.0%
CCAGCAACAGCAAAATCCTG+GGG + tig0024530:28027-28046 Msa1417830:CDS 50.0%
CAGCAACAGCAAAATCCTGG+GGG + tig0024530:28028-28047 Msa1417830:CDS 50.0%
TACAGTCAACCTCCTTCCTC+TGG + tig0024530:28085-28104 Msa1417830:CDS 50.0%
TGCCTATAACCAGAGGAAGG+AGG - tig0024530:28097-28116 None:intergenic 50.0%
GGTTGCCTATAACCAGAGGA+AGG - tig0024530:28100-28119 None:intergenic 50.0%
TCCTCTGGTTATAGGCAACC+TGG + tig0024530:28100-28119 Msa1417830:CDS 50.0%
TCCAGGTTGCCTATAACCAG+AGG - tig0024530:28104-28123 None:intergenic 50.0%
TGGTTATAGGCAACCTGGAC+AGG + tig0024530:28105-28124 Msa1417830:CDS 50.0%
GGTTATAGGCAACCTGGACA+GGG + tig0024530:28106-28125 Msa1417830:CDS 50.0%
GCGCAACAACAATCTGGGTA+TGG + tig0024530:28160-28179 Msa1417830:CDS 50.0%
! TATGGCTCTGCTCCCAGTTA+TGG + tig0024530:28214-28233 Msa1417830:CDS 50.0%
TGGGAGTAATCCAACCCAAG+AGG + tig0024530:28240-28259 Msa1417830:CDS 50.0%
GGGAGTAATCCAACCCAAGA+GGG + tig0024530:28241-28260 Msa1417830:CDS 50.0%
GGAGTAATCCAACCCAAGAG+GGG + tig0024530:28242-28261 Msa1417830:CDS 50.0%
!! CAGTAGTGGGTTGGGAAGTT+TGG - tig0024530:28303-28322 None:intergenic 50.0%
!! GTTGGTAGCATAGCCTTGCT+GGG - tig0024530:28329-28348 None:intergenic 50.0%
TTGACTTCCATAGGCCGCTT+GGG - tig0024530:28395-28414 None:intergenic 50.0%
TCTGGCTGAGCATATCCAGA+AGG - tig0024530:28559-28578 None:intergenic 50.0%
GGATATGCTCAGCCAGAGTT+AGG + tig0024530:28562-28581 Msa1417830:CDS 50.0%
TATGATTGCGGACCATACCC+TGG - tig0024530:28610-28629 None:intergenic 50.0%
GGGTATGGTCCGCAATCATA+TGG + tig0024530:28610-28629 Msa1417830:CDS 50.0%
TCATATGGTGCTCCTCAAGG+TGG + tig0024530:28625-28644 Msa1417830:CDS 50.0%
TTCCATATGACGGTGGAGTC+TGG - tig0024530:28666-28685 None:intergenic 50.0%
ACTTTAGCAACACTGCCCTG+TGG - tig0024530:28760-28779 None:intergenic 50.0%
TTGGTTGTGTTGTGTCCGGT+TGG + tig0024530:29231-29250 Msa1417830:intron 50.0%
!! TGCAGAATTTGGTGCAACCG+TGG + tig0024530:29883-29902 Msa1417830:three_prime_UTR 50.0%
AACACGGTGTGGGAAGGAGT+TGG - tig0024530:24755-24774 None:intergenic 55.0%
! TTCGAGTTCGATGTCCGTGG+CGG - tig0024530:24866-24885 None:intergenic 55.0%
! GACTTCGAGTTCGATGTCCG+TGG - tig0024530:24869-24888 None:intergenic 55.0%
TTGGGATCGTAGGAGAGTGG+TGG - tig0024530:24952-24971 None:intergenic 55.0%
! CGTTTGGGATCGTAGGAGAG+TGG - tig0024530:24955-24974 None:intergenic 55.0%
!! TGGAGCACCGTTATCGGACT+TGG - tig0024530:24980-24999 None:intergenic 55.0%
AAGCCGCAATACTCGCAGCA+AGG + tig0024530:25027-25046 Msa1417830:CDS 55.0%
! CCACCTTGCTGCGAGTATTG+CGG - tig0024530:25033-25052 None:intergenic 55.0%
CGGATGGTTGCACAATCTGG+GGG + tig0024530:26231-26250 Msa1417830:CDS 55.0%
! CCAAAAAGCATGCCTGCAGC+TGG - tig0024530:26310-26329 None:intergenic 55.0%
! CCAGCTGCAGGCATGCTTTT+TGG + tig0024530:26307-26326 Msa1417830:intron 55.0%
TTCTACCGGGGCACGAATTC+AGG + tig0024530:26435-26454 Msa1417830:CDS 55.0%
AGTCATGAGAGTCGGGCAGT+CGG - tig0024530:26555-26574 None:intergenic 55.0%
ACTGCCCGACTCTCATGACT+TGG + tig0024530:26555-26574 Msa1417830:intron 55.0%
ATACCTTTGCATCCTCCCCC+AGG + tig0024530:26628-26647 Msa1417830:CDS 55.0%
GTTGATGTATCACCTGGGGG+AGG - tig0024530:26643-26662 None:intergenic 55.0%
! TGGGTTGAGGGAAGGTTGAG+AGG + tig0024530:27443-27462 Msa1417830:intron 55.0%
GGTTATGGCTATGGGCAACC+TGG + tig0024530:27839-27858 Msa1417830:CDS 55.0%
GGGCAACCTGGATCATACTC+TGG + tig0024530:27851-27870 Msa1417830:CDS 55.0%
ATGCCTCAGCCACCATATGC+AGG + tig0024530:27893-27912 Msa1417830:CDS 55.0%
TAGCCTGCATATGGTGGCTG+AGG - tig0024530:27899-27918 None:intergenic 55.0%
GGAGGATAGCCTGCATATGG+TGG - tig0024530:27905-27924 None:intergenic 55.0%
GAATATCCACCGGGTTGCTG+AGG - tig0024530:27926-27945 None:intergenic 55.0%
CAGTTGGCGGAATATCCACC+GGG - tig0024530:27935-27954 None:intergenic 55.0%
CCAGTTGGCGGAATATCCAC+CGG - tig0024530:27936-27955 None:intergenic 55.0%
CGGTGGATATTCCGCCAACT+GGG + tig0024530:27934-27953 Msa1417830:CDS 55.0%
! AGTCGATTGGTCCCAGTTGG+CGG - tig0024530:27948-27967 None:intergenic 55.0%
! AGCAGTCGATTGGTCCCAGT+TGG - tig0024530:27951-27970 None:intergenic 55.0%
GGTGAGATGGAGCAGTCGAT+TGG - tig0024530:27961-27980 None:intergenic 55.0%
CCCCAGCAACAGCAAAATCC+TGG + tig0024530:28025-28044 Msa1417830:CDS 55.0%
!!! CCCCAGGATTTTGCTGTTGC+TGG - tig0024530:28030-28049 None:intergenic 55.0%
CTGTATGCAGACCCATCAGC+TGG - tig0024530:28064-28083 None:intergenic 55.0%
AGGCAACCTGGACAGGGTTA+TGG + tig0024530:28112-28131 Msa1417830:CDS 55.0%
ACCTGGACAGGGTTATGGTC+AGG + tig0024530:28117-28136 Msa1417830:CDS 55.0%
TCCTGACCATAACCCTGTCC+AGG - tig0024530:28121-28140 None:intergenic 55.0%
TCTGCTCCCAGTTATGGCAG+TGG + tig0024530:28220-28239 Msa1417830:CDS 55.0%
CTGCTCCCAGTTATGGCAGT+GGG + tig0024530:28221-28240 Msa1417830:CDS 55.0%
! GTTGGAAGTGTGCCCCTCTT+GGG - tig0024530:28257-28276 None:intergenic 55.0%
! AGTTGGAAGTGTGCCCCTCT+TGG - tig0024530:28258-28277 None:intergenic 55.0%
! GAGGGGCACACTTCCAACTA+TGG + tig0024530:28259-28278 Msa1417830:CDS 55.0%
!! AGTGGGTTGGGAAGTTTGGG+AGG - tig0024530:28299-28318 None:intergenic 55.0%
!! CTGGGCAACAGTAGTGGGTT+GGG - tig0024530:28311-28330 None:intergenic 55.0%
CCTTGCTGGGCAACAGTAGT+GGG - tig0024530:28316-28335 None:intergenic 55.0%
!! GGTTGGTAGCATAGCCTTGC+TGG - tig0024530:28330-28349 None:intergenic 55.0%
GCTACCCCATAACCTGGTTG+AGG - tig0024530:28364-28383 None:intergenic 55.0%
! GTTGACTTCCATAGGCCGCT+TGG - tig0024530:28396-28415 None:intergenic 55.0%
CCAGGTCCATAACCAGACTG+TGG - tig0024530:28418-28437 None:intergenic 55.0%
CCACAGTCTGGTTATGGACC+TGG + tig0024530:28415-28434 Msa1417830:CDS 55.0%
!! GCACTTGGCTTTTGAGAGGG+AGG - tig0024530:28451-28470 None:intergenic 55.0%
ACTGACCATAGCCTCCTGCT+GGG - tig0024530:28510-28529 None:intergenic 55.0%
GTCAGCATATCCCTCTAGCC+AGG + tig0024530:28528-28547 Msa1417830:CDS 55.0%
CTGAGCATATCCAGAAGGCG+GGG - tig0024530:28554-28573 None:intergenic 55.0%
GCTGAGCATATCCAGAAGGC+GGG - tig0024530:28555-28574 None:intergenic 55.0%
GGCTGAGCATATCCAGAAGG+CGG - tig0024530:28556-28575 None:intergenic 55.0%
GCTCTCTGAGTGCCTAACTC+TGG - tig0024530:28577-28596 None:intergenic 55.0%
!! AGAGAGCACCAGTGCAACCA+GGG + tig0024530:28590-28609 Msa1417830:CDS 55.0%
TAGCGATGGAGCAACTGCAC+AGG + tig0024530:28729-28748 Msa1417830:CDS 55.0%
AACTGCACAGGCTGTTCCAC+AGG + tig0024530:28741-28760 Msa1417830:CDS 55.0%
ACTGCACAGGCTGTTCCACA+GGG + tig0024530:28742-28761 Msa1417830:CDS 55.0%
CGATGAACAACCCACCGCCA+CGG + tig0024530:24849-24868 Msa1417830:CDS 60.0%
AGTTCGATGTCCGTGGCGGT+GGG - tig0024530:24862-24881 None:intergenic 60.0%
GGTGACGCTGAGAAGACGAG+CGG - tig0024530:24923-24942 None:intergenic 60.0%
GCTCGTCTTCTCAGCGTCAC+CGG + tig0024530:24922-24941 Msa1417830:CDS 60.0%
CCGCAATACTCGCAGCAAGG+TGG + tig0024530:25030-25049 Msa1417830:CDS 60.0%
TAGGCTGAAGCTGGGGCTTC+TGG + tig0024530:26195-26214 Msa1417830:intron 60.0%
CTTCTGGCGGTGGCACTAGA+CGG + tig0024530:26211-26230 Msa1417830:CDS 60.0%
TCACCTGGGGGAGGATGCAA+AGG - tig0024530:26634-26653 None:intergenic 60.0%
AGCTAGACGGTGGTCGGGAT+TGG - tig0024530:27787-27806 None:intergenic 60.0%
AATCCCGACCACCGTCTAGC+TGG + tig0024530:27786-27805 Msa1417830:CDS 60.0%
ATCCCGACCACCGTCTAGCT+GGG + tig0024530:27787-27806 Msa1417830:CDS 60.0%
TGTTGTGCAGGAGCAGCAGG+AGG - tig0024530:27815-27834 None:intergenic 60.0%
!! GCTTGTTGTGCAGGAGCAGC+AGG - tig0024530:27818-27837 None:intergenic 60.0%
GCTGCTCCTGCACAACAAGC+TGG + tig0024530:27818-27837 Msa1417830:CDS 60.0%
GGCTATCCTCCTCAGCAACC+CGG + tig0024530:27914-27933 Msa1417830:CDS 60.0%
TATCCTCCTCAGCAACCCGG+TGG + tig0024530:27917-27936 Msa1417830:CDS 60.0%
TATCCACCGGGTTGCTGAGG+AGG - tig0024530:27923-27942 None:intergenic 60.0%
CCGGTGGATATTCCGCCAAC+TGG + tig0024530:27933-27952 Msa1417830:CDS 60.0%
GTCCTCCACAGCCAGCTGAT+GGG + tig0024530:28050-28069 Msa1417830:CDS 60.0%
GAAGTGTGCCCCTCTTGGGT+TGG - tig0024530:28253-28272 None:intergenic 60.0%
!! GCTGGGCAACAGTAGTGGGT+TGG - tig0024530:28312-28331 None:intergenic 60.0%
CCCACTACTGTTGCCCAGCA+AGG + tig0024530:28313-28332 Msa1417830:CDS 60.0%
GCCTTGCTGGGCAACAGTAG+TGG - tig0024530:28317-28336 None:intergenic 60.0%
GTAGGGGCTACCCCATAACC+TGG - tig0024530:28370-28389 None:intergenic 60.0%
ATAGGCCGCTTGGGAGGTAG+GGG - tig0024530:28386-28405 None:intergenic 60.0%
CATAGGCCGCTTGGGAGGTA+GGG - tig0024530:28387-28406 None:intergenic 60.0%
ACTTCCATAGGCCGCTTGGG+AGG - tig0024530:28392-28411 None:intergenic 60.0%
!! GAGGGAGGAGCACCATAACC+AGG - tig0024530:28436-28455 None:intergenic 60.0%
TCACAGTCACCTAGCCCAGC+AGG + tig0024530:28493-28512 Msa1417830:CDS 60.0%
GACTGACCATAGCCTCCTGC+TGG - tig0024530:28511-28530 None:intergenic 60.0%
!! CAGAGAGCACCAGTGCAACC+AGG + tig0024530:28589-28608 Msa1417830:CDS 60.0%
GCACCAGTGCAACCAGGGTA+TGG + tig0024530:28595-28614 Msa1417830:CDS 60.0%
GGACCATACCCTGGTTGCAC+TGG - tig0024530:28601-28620 None:intergenic 60.0%
! TAGCTAGGCTGGCCACCTTG+AGG - tig0024530:28640-28659 None:intergenic 60.0%
CAAGGTGGCCAGCCTAGCTA+TGG + tig0024530:28640-28659 Msa1417830:CDS 60.0%
GAGTCTGGCCATAGCTAGGC+TGG - tig0024530:28651-28670 None:intergenic 60.0%
GGTGGAGTCTGGCCATAGCT+AGG - tig0024530:28655-28674 None:intergenic 60.0%
GGCCAGACTCCACCGTCATA+TGG + tig0024530:28661-28680 Msa1417830:CDS 60.0%
GCTCCATCGCTAGCATACGC+TGG - tig0024530:28721-28740 None:intergenic 60.0%
GAGTTCGATGTCCGTGGCGG+TGG - tig0024530:24863-24882 None:intergenic 65.0%
! GTAGGAGAGTGGTGGAGCGC+CGG - tig0024530:24944-24963 None:intergenic 65.0%
GCTGAAGCTGGGGCTTCTGG+CGG + tig0024530:26198-26217 Msa1417830:CDS 65.0%
TGGCGGTGGCACTAGACGGA+TGG + tig0024530:26215-26234 Msa1417830:CDS 65.0%
AGCCCAGCTAGACGGTGGTC+GGG - tig0024530:27792-27811 None:intergenic 65.0%
GAGCCCAGCTAGACGGTGGT+CGG - tig0024530:27793-27812 None:intergenic 65.0%
GCAGGAGGAGCCCAGCTAGA+CGG - tig0024530:27800-27819 None:intergenic 65.0%
GGTCCTCCACAGCCAGCTGA+TGG + tig0024530:28049-28068 Msa1417830:CDS 65.0%
GACCCATCAGCTGGCTGTGG+AGG - tig0024530:28055-28074 None:intergenic 65.0%
GCAGACCCATCAGCTGGCTG+TGG - tig0024530:28058-28077 None:intergenic 65.0%
GGTAGCCCCTACCTCCCAAG+CGG + tig0024530:28378-28397 Msa1417830:CDS 65.0%
CCATAGGCCGCTTGGGAGGT+AGG - tig0024530:28388-28407 None:intergenic 65.0%
CCTACCTCCCAAGCGGCCTA+TGG + tig0024530:28385-28404 Msa1417830:CDS 65.0%
CAGTCACCTAGCCCAGCAGG+AGG + tig0024530:28496-28515 Msa1417830:CDS 65.0%
CCATAGCCTCCTGCTGGGCT+AGG - tig0024530:28505-28524 None:intergenic 65.0%
CCTAGCCCAGCAGGAGGCTA+TGG + tig0024530:28502-28521 Msa1417830:CDS 65.0%
CATATCCAGAAGGCGGGGCC+TGG - tig0024530:28549-28568 None:intergenic 65.0%
GAAGCTGGGGCTTCTGGCGG+TGG + tig0024530:26201-26220 Msa1417830:CDS 70.0%
GGAGGAGCCCAGCTAGACGG+TGG - tig0024530:27797-27816 None:intergenic 70.0%
GAAGGCGGGGCCTGGCTAGA+GGG - tig0024530:28541-28560 None:intergenic 70.0%
AGAAGGCGGGGCCTGGCTAG+AGG - tig0024530:28542-28561 None:intergenic 70.0%
TCTAGCCAGGCCCCGCCTTC+TGG + tig0024530:28541-28560 Msa1417830:CDS 70.0%
GCTGGCTGTGGAGGACCCCC+AGG - tig0024530:28046-28065 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
tig0024530 gene 24717 29977 24717 ID=Msa1417830;Name=Msa1417830
tig0024530 mRNA 24717 29977 24717 ID=Msa1417830-mRNA-1;Parent=Msa1417830;Name=Msa1417830-mRNA-1;_AED=0.06;_eAED=0.06;_QI=91|1|1|1|0.8|0.66|6|390|605
tig0024530 exon 24717 25281 24717 ID=Msa1417830-mRNA-1:exon:70;Parent=Msa1417830-mRNA-1
tig0024530 exon 26198 26287 26198 ID=Msa1417830-mRNA-1:exon:71;Parent=Msa1417830-mRNA-1
tig0024530 exon 26385 26456 26385 ID=Msa1417830-mRNA-1:exon:72;Parent=Msa1417830-mRNA-1
tig0024530 exon 26625 26744 26625 ID=Msa1417830-mRNA-1:exon:73;Parent=Msa1417830-mRNA-1
tig0024530 exon 27734 29009 27734 ID=Msa1417830-mRNA-1:exon:74;Parent=Msa1417830-mRNA-1
tig0024530 exon 29802 29977 29802 ID=Msa1417830-mRNA-1:exon:75;Parent=Msa1417830-mRNA-1
tig0024530 five_prime_UTR 24717 24807 24717 ID=Msa1417830-mRNA-1:five_prime_utr;Parent=Msa1417830-mRNA-1
tig0024530 CDS 24808 25281 24808 ID=Msa1417830-mRNA-1:cds;Parent=Msa1417830-mRNA-1
tig0024530 CDS 26198 26287 26198 ID=Msa1417830-mRNA-1:cds;Parent=Msa1417830-mRNA-1
tig0024530 CDS 26385 26456 26385 ID=Msa1417830-mRNA-1:cds;Parent=Msa1417830-mRNA-1
tig0024530 CDS 26625 26744 26625 ID=Msa1417830-mRNA-1:cds;Parent=Msa1417830-mRNA-1
tig0024530 CDS 27734 28795 27734 ID=Msa1417830-mRNA-1:cds;Parent=Msa1417830-mRNA-1
tig0024530 three_prime_UTR 28796 29009 28796 ID=Msa1417830-mRNA-1:three_prime_utr;Parent=Msa1417830-mRNA-1
tig0024530 three_prime_UTR 29802 29977 29802 ID=Msa1417830-mRNA-1:three_prime_utr;Parent=Msa1417830-mRNA-1
Gene Sequence

>Msa1417830

ATGGCGGAAGAAGCACAGTACGCAACCCTAAAACGCAAGTACGATGAACAACCCACCGCCACGGACATCGAACTCGAAGTCGCAAACGCCAAACAACGAGCTCAAGAAGTTGCCGCTCGTCTTCTCAGCGTCACCGGCGCTCCACCACTCTCCTACGATCCCAAACGAACCAAGTCCGATAACGGTGCTCCACAATCGGGGTTTGATTCTTACGATTTGAAGCCGCAATACTCGCAGCAAGGTGGTAGTTATGGTTCTAGTAAGAAGATTGAAATACCTAATGGTAGGGTTGGTGTTCTTATTGGTAAAGGAGGTGAAACTATTAAGTATCTTCAGATGCAATCTGGTGCTAAGATTCAAGTTACTCGTGATATGGATGCTGATCCTAATTCTCAGACTAGGATGGTTGAACTTATGGGTACTCCTGACGCTGTTTCTTCTGCTGAGAAACTCATCAATGAAGTCCTTGCTGAGGCTGAAGCTGGGGCTTCTGGCGGTGGCACTAGACGGATGGTTGCACAATCTGGGGGTGATGAATTTGTGATGCAAATACCAAACAATAAGGTTGGCCTTATAATCGGTAAAGGAGGAGAAACAATAAAGAGTATGCAAGCTTCTACCGGGGCACGAATTCAGGTGATACCTTTGCATCCTCCCCCAGGTGATACATCAACAGAAAGAACATTAAAAATCGATGGGACCCCTGATCAAATTGAATCAGCAAAGCAATTGGTTAATCAAATCCTCACTGGTGAGAATCGTCTCAGAAATTCAGGGAACTCAGGTGGTTATACTCAGCAAGGTTACCAATCCCGACCACCGTCTAGCTGGGCTCCTCCTGCTGCTCCTGCACAACAAGCTGGTTATGGCTATGGGCAACCTGGATCATACTCTGGTCCATCACCGCAGTATAACATGCCTCAGCCACCATATGCAGGCTATCCTCCTCAGCAACCCGGTGGATATTCCGCCAACTGGGACCAATCGACTGCTCCATCTCACCAGCAGTCTACTCATGCAAGTGGTTATGATTATTACAACCAACAACCCCAGCAACAGCAAAATCCTGGGGGTCCTCCACAGCCAGCTGATGGGTCTGCATACAGTTACAGTCAACCTCCTTCCTCTGGTTATAGGCAACCTGGACAGGGTTATGGTCAGGAAAGCTATGGTGCGTATAATGCGCAACAACAATCTGGGTATGGTCAGCCACAAACATATGATCAGCAACAAGGTTATGGCTCTGCTCCCAGTTATGGCAGTGGGAGTAATCCAACCCAAGAGGGGCACACTTCCAACTATGGATCACAAGCAGATACCTCCCAAACTTCCCAACCCACTACTGTTGCCCAGCAAGGCTATGCTACCAACCAACAAGAAACTCCTCAACCAGGTTATGGGGTAGCCCCTACCTCCCAAGCGGCCTATGGAAGTCAACCACAGTCTGGTTATGGACCTGGTTATGGTGCTCCTCCCTCTCAAAAGCCAAGTGCAAATCCACCTGCTTATGGTCAATCACAGTCACCTAGCCCAGCAGGAGGCTATGGTCAGTCAGCATATCCCTCTAGCCAGGCCCCGCCTTCTGGATATGCTCAGCCAGAGTTAGGCACTCAGAGAGCACCAGTGCAACCAGGGTATGGTCCGCAATCATATGGTGCTCCTCAAGGTGGCCAGCCTAGCTATGGCCAGACTCCACCGTCATATGGAAATAGTTCTTATGGTGCTAGTTATGCTCAGGCTCCAGCGTATGCTAGCGATGGAGCAACTGCACAGGCTGTTCCACAGGGCAGTGTTGCTAAAGTGTCACCCAAGAGTTGA
Protein sequence

>Msa1417830

MAEEAQYATLKRKYDEQPTATDIELEVANAKQRAQEVAARLLSVTGAPPLSYDPKRTKSDNGAPQSGFDSYDLKPQYSQQGGSYGSSKKIEIPNGRVGVLIGKGGETIKYLQMQSGAKIQVTRDMDADPNSQTRMVELMGTPDAVSSAEKLINEVLAEAEAGASGGGTRRMVAQSGGDEFVMQIPNNKVGLIIGKGGETIKSMQASTGARIQVIPLHPPPGDTSTERTLKIDGTPDQIESAKQLVNQILTGENRLRNSGNSGGYTQQGYQSRPPSSWAPPAAPAQQAGYGYGQPGSYSGPSPQYNMPQPPYAGYPPQQPGGYSANWDQSTAPSHQQSTHASGYDYYNQQPQQQQNPGGPPQPADGSAYSYSQPPSSGYRQPGQGYGQESYGAYNAQQQSGYGQPQTYDQQQGYGSAPSYGSGSNPTQEGHTSNYGSQADTSQTSQPTTVAQQGYATNQQETPQPGYGVAPTSQAAYGSQPQSGYGPGYGAPPSQKPSANPPAYGQSQSPSPAGGYGQSAYPSSQAPPSGYAQPELGTQRAPVQPGYGPQSYGAPQGGQPSYGQTPPSYGNSSYGASYAQAPAYASDGATAQAVPQGSVAKVSPKS*