Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene35575.t1 | XP_013460926.1 | 99.4 | 316 | 2 | 0 | 1 | 316 | 1 | 316 | 1.10E-185 | 659.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene35575.t1 | Q9ZPE4 | 55.4 | 323 | 131 | 6 | 1 | 316 | 1 | 317 | 2.8e-94 | 346.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene35575.t1 | A0A072V9V7 | 99.4 | 316 | 2 | 0 | 1 | 316 | 1 | 316 | 7.6e-186 | 659.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049142 | MS.gene35575 | 0.842588 | 2.36E-58 | -1.69E-46 |
| MS.gene049254 | MS.gene35575 | 0.835886 | 1.29E-56 | -1.69E-46 |
| MS.gene049343 | MS.gene35575 | 0.806609 | 7.57E-50 | -1.69E-46 |
| MS.gene049350 | MS.gene35575 | 0.868076 | 8.54E-66 | -1.69E-46 |
| MS.gene049368 | MS.gene35575 | 0.823186 | 1.59E-53 | -1.69E-46 |
| MS.gene049404 | MS.gene35575 | 0.816875 | 4.41E-52 | -1.69E-46 |
| MS.gene049672 | MS.gene35575 | 0.800702 | 1.27E-48 | -1.69E-46 |
| MS.gene049711 | MS.gene35575 | 0.864903 | 8.70E-65 | -1.69E-46 |
| MS.gene049807 | MS.gene35575 | 0.825284 | 5.10E-54 | -1.69E-46 |
| MS.gene049821 | MS.gene35575 | 0.840336 | 9.25E-58 | -1.69E-46 |
| MS.gene049824 | MS.gene35575 | 0.820981 | 5.15E-53 | -1.69E-46 |
| MS.gene049825 | MS.gene35575 | 0.833102 | 6.47E-56 | -1.69E-46 |
| MS.gene049850 | MS.gene35575 | 0.848452 | 6.07E-60 | -1.69E-46 |
| MS.gene049873 | MS.gene35575 | 0.81648 | 5.41E-52 | -1.69E-46 |
| MS.gene050125 | MS.gene35575 | 0.805462 | 1.32E-49 | -1.69E-46 |
| MS.gene050156 | MS.gene35575 | 0.80924 | 2.09E-50 | -1.69E-46 |
| MS.gene050237 | MS.gene35575 | 0.809825 | 1.56E-50 | -1.69E-46 |
| MS.gene050253 | MS.gene35575 | 0.808264 | 3.37E-50 | -1.69E-46 |
| MS.gene05045 | MS.gene35575 | 0.821821 | 3.29E-53 | -1.69E-46 |
| MS.gene050559 | MS.gene35575 | 0.815567 | 8.65E-52 | -1.69E-46 |
| MS.gene050561 | MS.gene35575 | 0.811404 | 7.12E-51 | -1.69E-46 |
| MS.gene050562 | MS.gene35575 | 0.801091 | 1.06E-48 | -1.69E-46 |
| MS.gene050807 | MS.gene35575 | 0.825282 | 5.10E-54 | -1.69E-46 |
| MS.gene050901 | MS.gene35575 | 0.827749 | 1.32E-54 | -1.69E-46 |
| MS.gene051018 | MS.gene35575 | 0.80671 | 7.21E-50 | -1.69E-46 |
| MS.gene051247 | MS.gene35575 | 0.850047 | 2.19E-60 | -1.69E-46 |
| MS.gene051279 | MS.gene35575 | 0.838431 | 2.89E-57 | -1.69E-46 |
| MS.gene051328 | MS.gene35575 | 0.816219 | 6.19E-52 | -1.69E-46 |
| MS.gene051388 | MS.gene35575 | 0.816193 | 6.27E-52 | -1.69E-46 |
| MS.gene05157 | MS.gene35575 | 0.808435 | 3.10E-50 | -1.69E-46 |
| MS.gene051700 | MS.gene35575 | 0.844015 | 9.82E-59 | -1.69E-46 |
| MS.gene051719 | MS.gene35575 | 0.884295 | 2.17E-71 | -1.69E-46 |
| MS.gene051720 | MS.gene35575 | 0.889623 | 2.05E-73 | -1.69E-46 |
| MS.gene051744 | MS.gene35575 | 0.838981 | 2.08E-57 | -1.69E-46 |
| MS.gene051957 | MS.gene35575 | 0.822144 | 2.77E-53 | -1.69E-46 |
| MS.gene052000 | MS.gene35575 | 0.81034 | 1.21E-50 | -1.69E-46 |
| MS.gene052020 | MS.gene35575 | 0.805285 | 1.44E-49 | -1.69E-46 |
| MS.gene052133 | MS.gene35575 | 0.818907 | 1.53E-52 | -1.69E-46 |
| MS.gene052463 | MS.gene35575 | 0.819035 | 1.43E-52 | -1.69E-46 |
| MS.gene052516 | MS.gene35575 | 0.859219 | 4.81E-63 | -1.69E-46 |
| MS.gene052519 | MS.gene35575 | 0.847522 | 1.10E-59 | -1.69E-46 |
| MS.gene052561 | MS.gene35575 | 0.804159 | 2.47E-49 | -1.69E-46 |
| MS.gene052582 | MS.gene35575 | 0.836555 | 8.74E-57 | -1.69E-46 |
| MS.gene052584 | MS.gene35575 | 0.849867 | 2.45E-60 | -1.69E-46 |
| MS.gene052611 | MS.gene35575 | 0.81506 | 1.12E-51 | -1.69E-46 |
| MS.gene052665 | MS.gene35575 | 0.804819 | 1.80E-49 | -1.69E-46 |
| MS.gene052673 | MS.gene35575 | -0.809774 | 1.60E-50 | -1.69E-46 |
| MS.gene052773 | MS.gene35575 | 0.836761 | 7.74E-57 | -1.69E-46 |
| MS.gene052863 | MS.gene35575 | 0.841733 | 3.97E-58 | -1.69E-46 |
| MS.gene052896 | MS.gene35575 | 0.830646 | 2.61E-55 | -1.69E-46 |
| MS.gene053008 | MS.gene35575 | 0.801383 | 9.24E-49 | -1.69E-46 |
| MS.gene053079 | MS.gene35575 | 0.81219 | 4.80E-51 | -1.69E-46 |
| MS.gene053122 | MS.gene35575 | 0.820035 | 8.49E-53 | -1.69E-46 |
| MS.gene053144 | MS.gene35575 | 0.849328 | 3.47E-60 | -1.69E-46 |
| MS.gene053164 | MS.gene35575 | 0.806482 | 8.05E-50 | -1.69E-46 |
| MS.gene053221 | MS.gene35575 | 0.819336 | 1.23E-52 | -1.69E-46 |
| MS.gene053226 | MS.gene35575 | 0.874756 | 5.27E-68 | -1.69E-46 |
| MS.gene053536 | MS.gene35575 | 0.811142 | 8.12E-51 | -1.69E-46 |
| MS.gene053538 | MS.gene35575 | 0.811964 | 5.38E-51 | -1.69E-46 |
| MS.gene053581 | MS.gene35575 | 0.833214 | 6.06E-56 | -1.69E-46 |
| MS.gene053597 | MS.gene35575 | 0.810465 | 1.14E-50 | -1.69E-46 |
| MS.gene053599 | MS.gene35575 | 0.846015 | 2.83E-59 | -1.69E-46 |
| MS.gene05364 | MS.gene35575 | 0.825278 | 5.11E-54 | -1.69E-46 |
| MS.gene053678 | MS.gene35575 | 0.804576 | 2.02E-49 | -1.69E-46 |
| MS.gene053883 | MS.gene35575 | 0.823703 | 1.20E-53 | -1.69E-46 |
| MS.gene054142 | MS.gene35575 | 0.818106 | 2.33E-52 | -1.69E-46 |
| MS.gene05415 | MS.gene35575 | 0.802685 | 4.99E-49 | -1.69E-46 |
| MS.gene05423 | MS.gene35575 | 0.832411 | 9.60E-56 | -1.69E-46 |
| MS.gene054584 | MS.gene35575 | 0.845874 | 3.09E-59 | -1.69E-46 |
| MS.gene05458 | MS.gene35575 | 0.848866 | 4.66E-60 | -1.69E-46 |
| MS.gene054651 | MS.gene35575 | 0.857177 | 1.95E-62 | -1.69E-46 |
| MS.gene054775 | MS.gene35575 | 0.826878 | 2.13E-54 | -1.69E-46 |
| MS.gene054991 | MS.gene35575 | 0.819152 | 1.35E-52 | -1.69E-46 |
| MS.gene055144 | MS.gene35575 | 0.832018 | 1.20E-55 | -1.69E-46 |
| MS.gene055227 | MS.gene35575 | 0.807226 | 5.60E-50 | -1.69E-46 |
| MS.gene055465 | MS.gene35575 | 0.852789 | 3.67E-61 | -1.69E-46 |
| MS.gene055466 | MS.gene35575 | 0.861919 | 7.32E-64 | -1.69E-46 |
| MS.gene055468 | MS.gene35575 | 0.859659 | 3.55E-63 | -1.69E-46 |
| MS.gene055469 | MS.gene35575 | 0.812406 | 4.31E-51 | -1.69E-46 |
| MS.gene055512 | MS.gene35575 | 0.823186 | 1.59E-53 | -1.69E-46 |
| MS.gene055513 | MS.gene35575 | 0.809761 | 1.61E-50 | -1.69E-46 |
| MS.gene055537 | MS.gene35575 | 0.838464 | 2.83E-57 | -1.69E-46 |
| MS.gene055555 | MS.gene35575 | 0.811867 | 5.65E-51 | -1.69E-46 |
| MS.gene055580 | MS.gene35575 | -0.848929 | 4.48E-60 | -1.69E-46 |
| MS.gene055694 | MS.gene35575 | 0.827153 | 1.83E-54 | -1.69E-46 |
| MS.gene055778 | MS.gene35575 | 0.826336 | 2.87E-54 | -1.69E-46 |
| MS.gene055818 | MS.gene35575 | 0.839156 | 1.88E-57 | -1.69E-46 |
| MS.gene055890 | MS.gene35575 | 0.825512 | 4.50E-54 | -1.69E-46 |
| MS.gene055891 | MS.gene35575 | 0.833569 | 4.95E-56 | -1.69E-46 |
| MS.gene055926 | MS.gene35575 | 0.802245 | 6.15E-49 | -1.69E-46 |
| MS.gene056005 | MS.gene35575 | 0.813243 | 2.82E-51 | -1.69E-46 |
| MS.gene056043 | MS.gene35575 | -0.832654 | 8.35E-56 | -1.69E-46 |
| MS.gene05604 | MS.gene35575 | 0.815432 | 9.27E-52 | -1.69E-46 |
| MS.gene056050 | MS.gene35575 | 0.834063 | 3.72E-56 | -1.69E-46 |
| MS.gene056174 | MS.gene35575 | 0.824022 | 1.01E-53 | -1.69E-46 |
| MS.gene056215 | MS.gene35575 | 0.804543 | 2.05E-49 | -1.69E-46 |
| MS.gene056308 | MS.gene35575 | 0.85887 | 6.12E-63 | -1.69E-46 |
| MS.gene056366 | MS.gene35575 | 0.844669 | 6.55E-59 | -1.69E-46 |
| MS.gene056553 | MS.gene35575 | 0.809624 | 1.73E-50 | -1.69E-46 |
| MS.gene056595 | MS.gene35575 | 0.829443 | 5.13E-55 | -1.69E-46 |
| MS.gene056859 | MS.gene35575 | 0.801383 | 9.24E-49 | -1.69E-46 |
| MS.gene05686 | MS.gene35575 | 0.819817 | 9.52E-53 | -1.69E-46 |
| MS.gene057102 | MS.gene35575 | 0.835673 | 1.46E-56 | -1.69E-46 |
| MS.gene057132 | MS.gene35575 | 0.803178 | 3.95E-49 | -1.69E-46 |
| MS.gene057287 | MS.gene35575 | 0.810133 | 1.34E-50 | -1.69E-46 |
| MS.gene057414 | MS.gene35575 | 0.806589 | 7.64E-50 | -1.69E-46 |
| MS.gene057444 | MS.gene35575 | 0.840913 | 6.53E-58 | -1.69E-46 |
| MS.gene057446 | MS.gene35575 | 0.802513 | 5.41E-49 | -1.69E-46 |
| MS.gene057598 | MS.gene35575 | 0.814826 | 1.26E-51 | -1.69E-46 |
| MS.gene057915 | MS.gene35575 | 0.840584 | 7.96E-58 | -1.69E-46 |
| MS.gene058037 | MS.gene35575 | 0.819928 | 8.98E-53 | -1.69E-46 |
| MS.gene058330 | MS.gene35575 | 0.804374 | 2.23E-49 | -1.69E-46 |
| MS.gene058339 | MS.gene35575 | 0.807619 | 4.63E-50 | -1.69E-46 |
| MS.gene05847 | MS.gene35575 | 0.805093 | 1.58E-49 | -1.69E-46 |
| MS.gene058625 | MS.gene35575 | 0.855417 | 6.40E-62 | -1.69E-46 |
| MS.gene058636 | MS.gene35575 | 0.810881 | 9.24E-51 | -1.69E-46 |
| MS.gene058783 | MS.gene35575 | 0.800584 | 1.35E-48 | -1.69E-46 |
| MS.gene058829 | MS.gene35575 | 0.821435 | 4.04E-53 | -1.69E-46 |
| MS.gene058852 | MS.gene35575 | 0.83133 | 1.77E-55 | -1.69E-46 |
| MS.gene05894 | MS.gene35575 | 0.84465 | 6.63E-59 | -1.69E-46 |
| MS.gene058979 | MS.gene35575 | 0.816454 | 5.48E-52 | -1.69E-46 |
| MS.gene059015 | MS.gene35575 | 0.830129 | 3.49E-55 | -1.69E-46 |
| MS.gene059084 | MS.gene35575 | 0.824254 | 8.92E-54 | -1.69E-46 |
| MS.gene059227 | MS.gene35575 | 0.809268 | 2.06E-50 | -1.69E-46 |
| MS.gene059424 | MS.gene35575 | 0.807613 | 4.64E-50 | -1.69E-46 |
| MS.gene05954 | MS.gene35575 | 0.825678 | 4.11E-54 | -1.69E-46 |
| MS.gene059570 | MS.gene35575 | 0.809183 | 2.15E-50 | -1.69E-46 |
| MS.gene059625 | MS.gene35575 | 0.853693 | 2.02E-61 | -1.69E-46 |
| MS.gene059725 | MS.gene35575 | 0.823533 | 1.32E-53 | -1.69E-46 |
| MS.gene059842 | MS.gene35575 | 0.810711 | 1.01E-50 | -1.69E-46 |
| MS.gene059937 | MS.gene35575 | 0.808279 | 3.35E-50 | -1.69E-46 |
| MS.gene060365 | MS.gene35575 | 0.821748 | 3.42E-53 | -1.69E-46 |
| MS.gene060429 | MS.gene35575 | 0.857482 | 1.58E-62 | -1.69E-46 |
| MS.gene060519 | MS.gene35575 | 0.855825 | 4.86E-62 | -1.69E-46 |
| MS.gene060521 | MS.gene35575 | 0.817943 | 2.54E-52 | -1.69E-46 |
| MS.gene060587 | MS.gene35575 | 0.848431 | 6.16E-60 | -1.69E-46 |
| MS.gene060603 | MS.gene35575 | 0.812331 | 4.47E-51 | -1.69E-46 |
| MS.gene060634 | MS.gene35575 | -0.820731 | 5.87E-53 | -1.69E-46 |
| MS.gene060935 | MS.gene35575 | 0.805259 | 1.46E-49 | -1.69E-46 |
| MS.gene061100 | MS.gene35575 | 0.835587 | 1.54E-56 | -1.69E-46 |
| MS.gene061176 | MS.gene35575 | 0.80928 | 2.05E-50 | -1.69E-46 |
| MS.gene061177 | MS.gene35575 | 0.808871 | 2.50E-50 | -1.69E-46 |
| MS.gene061178 | MS.gene35575 | 0.808781 | 2.62E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene35575.t1 | MTR_3g074900 | 99.367 | 316 | 2 | 0 | 1 | 316 | 1 | 316 | 0.0 | 648 |
| MS.gene35575.t1 | MTR_5g064480 | 57.729 | 317 | 132 | 2 | 1 | 316 | 1 | 316 | 5.84e-121 | 350 |
| MS.gene35575.t1 | MTR_5g098180 | 52.542 | 295 | 96 | 6 | 1 | 295 | 1 | 251 | 1.88e-94 | 280 |
| MS.gene35575.t1 | MTR_1g045100 | 34.914 | 232 | 139 | 6 | 9 | 231 | 22 | 250 | 2.64e-30 | 116 |
| MS.gene35575.t1 | MTR_1g044795 | 32.231 | 242 | 153 | 6 | 9 | 242 | 21 | 259 | 7.12e-26 | 104 |
| MS.gene35575.t1 | MTR_8g091730 | 29.565 | 230 | 149 | 4 | 9 | 229 | 22 | 247 | 4.91e-24 | 100 |
| MS.gene35575.t1 | MTR_3g067615 | 29.389 | 262 | 163 | 7 | 9 | 262 | 4 | 251 | 2.12e-23 | 97.8 |
| MS.gene35575.t1 | MTR_3g065610 | 28.980 | 245 | 163 | 7 | 5 | 243 | 18 | 257 | 1.82e-22 | 95.5 |
| MS.gene35575.t1 | MTR_2g018940 | 29.386 | 228 | 156 | 5 | 3 | 228 | 19 | 243 | 3.99e-22 | 95.1 |
| MS.gene35575.t1 | MTR_3g080360 | 27.203 | 261 | 175 | 8 | 2 | 256 | 33 | 284 | 7.42e-22 | 93.6 |
| MS.gene35575.t1 | MTR_2g018950 | 31.092 | 238 | 147 | 7 | 3 | 228 | 18 | 250 | 2.61e-21 | 92.8 |
| MS.gene35575.t1 | MTR_3g065590 | 28.571 | 266 | 177 | 8 | 5 | 262 | 18 | 278 | 4.07e-20 | 89.4 |
| MS.gene35575.t1 | MTR_8g040130 | 26.818 | 220 | 141 | 4 | 9 | 223 | 9 | 213 | 4.64e-20 | 87.4 |
| MS.gene35575.t1 | MTR_3g067630 | 29.730 | 222 | 148 | 6 | 9 | 228 | 20 | 235 | 6.96e-20 | 89.0 |
| MS.gene35575.t1 | MTR_3g067990 | 29.004 | 231 | 132 | 7 | 9 | 231 | 22 | 228 | 9.39e-20 | 87.4 |
| MS.gene35575.t1 | MTR_3g065620 | 28.195 | 266 | 180 | 6 | 9 | 273 | 17 | 272 | 1.09e-19 | 87.4 |
| MS.gene35575.t1 | MTR_3g067625 | 30.631 | 222 | 146 | 6 | 9 | 228 | 20 | 235 | 1.58e-19 | 89.0 |
| MS.gene35575.t1 | MTR_2g018910 | 26.866 | 268 | 179 | 8 | 8 | 262 | 26 | 289 | 1.98e-19 | 87.4 |
| MS.gene35575.t1 | MTR_5g027890 | 27.273 | 231 | 160 | 5 | 2 | 230 | 13 | 237 | 2.14e-19 | 86.3 |
| MS.gene35575.t1 | MTR_3g067645 | 29.386 | 228 | 153 | 5 | 2 | 228 | 14 | 234 | 1.10e-18 | 85.5 |
| MS.gene35575.t1 | MTR_4g130620 | 26.820 | 261 | 160 | 6 | 10 | 242 | 9 | 266 | 8.97e-17 | 79.7 |
| MS.gene35575.t1 | MTR_6g015900 | 26.496 | 234 | 160 | 6 | 2 | 228 | 9 | 237 | 3.19e-16 | 77.8 |
| MS.gene35575.t1 | MTR_6g015890 | 25.271 | 277 | 185 | 8 | 2 | 271 | 12 | 273 | 2.05e-15 | 75.9 |
| MS.gene35575.t1 | MTR_3g080280 | 27.753 | 227 | 157 | 6 | 9 | 234 | 24 | 244 | 2.80e-15 | 75.1 |
| MS.gene35575.t1 | MTR_3g080330 | 25.385 | 260 | 176 | 7 | 9 | 262 | 12 | 259 | 7.59e-15 | 73.6 |
| MS.gene35575.t1 | MTR_3g080310 | 27.197 | 239 | 165 | 5 | 9 | 243 | 12 | 245 | 9.68e-15 | 73.2 |
| MS.gene35575.t1 | MTR_3g065840 | 28.488 | 172 | 118 | 3 | 56 | 225 | 3 | 171 | 3.51e-14 | 70.9 |
| MS.gene35575.t1 | MTR_3g065820 | 26.829 | 246 | 171 | 5 | 9 | 248 | 20 | 262 | 4.71e-14 | 72.0 |
| MS.gene35575.t1 | MTR_3g065890 | 27.376 | 263 | 146 | 8 | 9 | 265 | 15 | 238 | 2.85e-13 | 68.6 |
| MS.gene35575.t1 | MTR_3g065850 | 27.442 | 215 | 152 | 3 | 9 | 221 | 18 | 230 | 4.54e-13 | 68.6 |
| MS.gene35575.t1 | MTR_7g047530 | 34.746 | 118 | 70 | 3 | 111 | 228 | 74 | 184 | 4.89e-13 | 67.8 |
| MS.gene35575.t1 | MTR_5g036740 | 25.095 | 263 | 183 | 6 | 9 | 260 | 12 | 271 | 5.43e-13 | 68.6 |
| MS.gene35575.t1 | MTR_7g451730 | 34.746 | 118 | 70 | 3 | 111 | 228 | 83 | 193 | 6.71e-13 | 67.4 |
| MS.gene35575.t1 | MTR_4g130630 | 27.751 | 209 | 130 | 5 | 10 | 217 | 30 | 218 | 8.52e-13 | 67.0 |
| MS.gene35575.t1 | MTR_3g080320 | 29.221 | 154 | 104 | 3 | 79 | 231 | 12 | 161 | 2.74e-11 | 62.0 |
| MS.gene35575.t1 | MTR_3g065730 | 28.846 | 156 | 102 | 5 | 68 | 221 | 59 | 207 | 3.73e-11 | 62.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene35575.t1 | AT4G08980 | 56.481 | 324 | 126 | 8 | 1 | 316 | 1 | 317 | 1.89e-117 | 341 |
| MS.gene35575.t1 | AT4G08980 | 56.481 | 324 | 126 | 8 | 1 | 316 | 1 | 317 | 1.89e-117 | 341 |
| MS.gene35575.t1 | AT4G08980 | 56.481 | 324 | 126 | 8 | 1 | 316 | 1 | 317 | 1.89e-117 | 341 |
| MS.gene35575.t1 | AT4G08980 | 56.481 | 324 | 126 | 8 | 1 | 316 | 1 | 317 | 1.89e-117 | 341 |
| MS.gene35575.t1 | AT4G08980 | 56.481 | 324 | 126 | 8 | 1 | 316 | 1 | 317 | 1.89e-117 | 341 |
| MS.gene35575.t1 | AT4G05460 | 31.834 | 289 | 180 | 8 | 3 | 289 | 12 | 285 | 3.02e-32 | 122 |
| MS.gene35575.t1 | AT5G57900 | 31.381 | 239 | 136 | 6 | 10 | 223 | 8 | 243 | 5.75e-24 | 99.8 |
| MS.gene35575.t1 | AT4G05470 | 30.645 | 248 | 140 | 10 | 6 | 231 | 42 | 279 | 5.44e-22 | 94.4 |
| MS.gene35575.t1 | AT4G05497 | 30.870 | 230 | 148 | 4 | 5 | 228 | 16 | 240 | 6.64e-22 | 92.8 |
| MS.gene35575.t1 | AT4G30640 | 30.126 | 239 | 141 | 6 | 10 | 223 | 20 | 257 | 9.19e-19 | 85.5 |
| MS.gene35575.t1 | AT4G05490 | 29.204 | 226 | 146 | 4 | 9 | 228 | 26 | 243 | 3.26e-18 | 84.0 |
| MS.gene35575.t1 | AT4G05475 | 26.582 | 237 | 153 | 8 | 9 | 231 | 39 | 268 | 4.34e-16 | 77.8 |
| MS.gene35575.t1 | AT4G03630 | 30.675 | 163 | 110 | 3 | 67 | 228 | 24 | 184 | 2.49e-15 | 74.3 |
| MS.gene35575.t1 | AT5G52480 | 34.911 | 169 | 104 | 4 | 76 | 244 | 23 | 185 | 1.26e-14 | 72.8 |
Find 64 sgRNAs with CRISPR-Local
Find 82 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTCAGAAAGCTGTGTGTTTC+TGG | 0.141960 | 3.3:+64423185 | MS.gene35575:CDS |
| ATAGATGATGAGCTTGAATT+TGG | 0.208213 | 3.3:+64424170 | MS.gene35575:CDS |
| TTTGGATCTGAGGGGTTGTT+GGG | 0.263491 | 3.3:+64423944 | MS.gene35575:CDS |
| TCATGGTGTAAAGCAGTTTC+TGG | 0.263962 | 3.3:+64423056 | MS.gene35575:CDS |
| GGCCCCAAAACTTTAAGTTT+TGG | 0.282942 | 3.3:-64424008 | None:intergenic |
| TTCAGCAATGAAAGTGAAAA+TGG | 0.303416 | 3.3:-64423222 | None:intergenic |
| GAATTGATTCCTGATGCATT+AGG | 0.312469 | 3.3:+64422972 | MS.gene35575:CDS |
| TATCATAGGATCAGCACTTC+GGG | 0.323828 | 3.3:+64423882 | MS.gene35575:CDS |
| GTGAGCTATTGTATCAAAAT+TGG | 0.365727 | 3.3:+64423702 | MS.gene35575:CDS |
| TCTATCTCTTGCCAACAATT+AGG | 0.369302 | 3.3:-64423080 | None:intergenic |
| AATTGATTCCTGATGCATTA+GGG | 0.374472 | 3.3:+64422973 | MS.gene35575:CDS |
| GTCATCTTGTAATGGCTTGC+CGG | 0.380621 | 3.3:-64423805 | None:intergenic |
| CACCATGATTTACATACCCT+TGG | 0.409233 | 3.3:-64423041 | None:intergenic |
| AAGGAGCAATATGAGCGATT+TGG | 0.420691 | 3.3:+64423632 | MS.gene35575:CDS |
| TTGGATTTGATGGGAGAAGC+AGG | 0.430121 | 3.3:+64422930 | None:intergenic |
| CTTGAATTTGGATTATATGA+AGG | 0.433911 | 3.3:+64424182 | MS.gene35575:CDS |
| TTGGTTGTGGAACAGATTGC+TGG | 0.436111 | 3.3:+64423651 | MS.gene35575:CDS |
| AGCAGGTGAATTACGAAGTT+GGG | 0.441077 | 3.3:+64422947 | MS.gene35575:CDS |
| AGCATCTGATCAAGTTTGTC+AGG | 0.441867 | 3.3:-64423131 | None:intergenic |
| TTGCAAGTGCTGGTTCCCTT+CGG | 0.442483 | 3.3:+64423595 | MS.gene35575:intron |
| ATTTCAAGATGCTTGAGCTT+CGG | 0.446197 | 3.3:-64423855 | None:intergenic |
| CAGTTTCTGGACCTAATTGT+TGG | 0.459386 | 3.3:+64423069 | MS.gene35575:CDS |
| GAAGCTCAAGCATCTTGAAA+TGG | 0.459501 | 3.3:+64423857 | MS.gene35575:CDS |
| TGCTTATGAGAGTGATGGTT+GGG | 0.462180 | 3.3:+64424043 | MS.gene35575:CDS |
| ATCTTGAAATGGCTTATCAT+AGG | 0.462972 | 3.3:+64423868 | MS.gene35575:CDS |
| AAGATCACCCCTAATGCATC+AGG | 0.469258 | 3.3:-64422981 | None:intergenic |
| TTGGATCTGAGGGGTTGTTG+GGG | 0.470223 | 3.3:+64423945 | MS.gene35575:CDS |
| CAATATGAGCGATTTGGTTG+TGG | 0.479679 | 3.3:+64423638 | MS.gene35575:CDS |
| TAGAAGATGCAGGAATGTAT+TGG | 0.493202 | 3.3:+64424207 | MS.gene35575:CDS |
| ATCAGATGAGTATCTAGCTT+GGG | 0.501324 | 3.3:+64424088 | MS.gene35575:CDS |
| TCATAAGCACCAAGAACAAA+AGG | 0.501629 | 3.3:-64424029 | None:intergenic |
| AGAGAGTGACAGTGATTCCA+AGG | 0.502069 | 3.3:+64423024 | MS.gene35575:CDS |
| AAGCAGGTGAATTACGAAGT+TGG | 0.504117 | 3.3:+64422946 | MS.gene35575:CDS |
| GCGTGTGCAATTGAGATGAT+AGG | 0.513987 | 3.3:+64423726 | MS.gene35575:CDS |
| TCTGATCAAGTTTGTCAGGT+TGG | 0.524395 | 3.3:-64423127 | None:intergenic |
| ATACAATCAAATTATGGTGA+TGG | 0.527049 | 3.3:-64424233 | None:intergenic |
| AAATCGCTCATATTGCTCCT+TGG | 0.539756 | 3.3:-64423630 | None:intergenic |
| CTTGGTGCTTATGAGAGTGA+TGG | 0.542339 | 3.3:+64424038 | MS.gene35575:CDS |
| GGCTTGCCGGCGGTATCCAA+TGG | 0.545652 | 3.3:-64423792 | None:intergenic |
| ATAGTGATGGTTATGAAGGA+AGG | 0.546896 | 3.3:+64424147 | MS.gene35575:CDS |
| TATGAAGGTATAGAAGATGC+AGG | 0.548479 | 3.3:+64424197 | MS.gene35575:CDS |
| GATGATAGTGATGGTTATGA+AGG | 0.552809 | 3.3:+64424143 | MS.gene35575:CDS |
| TTATCATAGGATCAGCACTT+CGG | 0.552891 | 3.3:+64423881 | MS.gene35575:CDS |
| TATGCCTCGTCATCTTGTAA+TGG | 0.553402 | 3.3:-64423813 | None:intergenic |
| TATCAGATGAGTATCTAGCT+TGG | 0.554785 | 3.3:+64424087 | MS.gene35575:CDS |
| TTCCAAGGGTATGTAAATCA+TGG | 0.555605 | 3.3:+64423039 | MS.gene35575:CDS |
| CAATCAAATTATGGTGATGG+AGG | 0.576770 | 3.3:-64424230 | None:intergenic |
| TTGGTAGTCTCAAACTCCGA+AGG | 0.580644 | 3.3:-64423611 | None:intergenic |
| ATGCTTATCAGTAAAAGTTG+TGG | 0.582915 | 3.3:+64423158 | MS.gene35575:CDS |
| AAGAGATAGATATTGAAGAA+TGG | 0.583086 | 3.3:+64423093 | MS.gene35575:CDS |
| ATGCATCCATTGGATACCGC+CGG | 0.587177 | 3.3:+64423786 | MS.gene35575:CDS |
| GTGTAGGAATATGCATCCAT+TGG | 0.590372 | 3.3:+64423776 | MS.gene35575:CDS |
| AACTGCTAGAAGAGTTGTGT+AGG | 0.601293 | 3.3:+64423760 | MS.gene35575:CDS |
| ATCATAGGATCAGCACTTCG+GGG | 0.610680 | 3.3:+64423883 | MS.gene35575:CDS |
| ATGCTTGAGCTTCGGCATTG+TGG | 0.616375 | 3.3:-64423847 | None:intergenic |
| TGGTAGTCTCAAACTCCGAA+GGG | 0.622847 | 3.3:-64423610 | None:intergenic |
| TCATAGGATCAGCACTTCGG+GGG | 0.633493 | 3.3:+64423884 | MS.gene35575:CDS |
| GTGCTTATGAGAGTGATGGT+TGG | 0.638986 | 3.3:+64424042 | MS.gene35575:CDS |
| CAAGCCATTACAAGATGACG+AGG | 0.644746 | 3.3:+64423809 | MS.gene35575:CDS |
| GAGAGTGACAGTGATTCCAA+GGG | 0.645348 | 3.3:+64423025 | MS.gene35575:CDS |
| ATCTTGTAATGGCTTGCCGG+CGG | 0.652260 | 3.3:-64423802 | None:intergenic |
| TATGTTGATGATGATAGTGA+TGG | 0.653534 | 3.3:+64424134 | MS.gene35575:CDS |
| ATTGATTCCTGATGCATTAG+GGG | 0.669573 | 3.3:+64422974 | MS.gene35575:CDS |
| TTCGGAGTTTGAGACTACCA+AGG | 0.691268 | 3.3:+64423613 | MS.gene35575:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AGATGAAAAAACATAAAATT+TGG | + | chr3.3:64423458-64423477 | MS.gene35575:intron | 15.0% |
| !! | TTGTTAAAATGTTTAACACA+AGG | + | chr3.3:64423338-64423357 | MS.gene35575:intron | 20.0% |
| !!! | ATTTCATTTTTCTTTCTTAC+TGG | + | chr3.3:64423527-64423546 | MS.gene35575:intron | 20.0% |
| !!! | ATTTTCTATGATAACTTTCT+TGG | + | chr3.3:64423677-64423696 | MS.gene35575:CDS | 20.0% |
| !!! | TTTCCAAAACTTAAAGTTTT+GGG | + | chr3.3:64424005-64424024 | MS.gene35575:CDS | 20.0% |
| !!! | TTTTCCAAAACTTAAAGTTT+TGG | + | chr3.3:64424004-64424023 | MS.gene35575:CDS | 20.0% |
| ! | AAGAGATAGATATTGAAGAA+TGG | + | chr3.3:64423093-64423112 | MS.gene35575:CDS | 25.0% |
| ! | CTTGAATTTGGATTATATGA+AGG | + | chr3.3:64424182-64424201 | MS.gene35575:CDS | 25.0% |
| !! | TCTAAAATGAAGTAAGACTA+TGG | - | chr3.3:64423266-64423285 | None:intergenic | 25.0% |
| !! | TTCCAAAACTTAAAGTTTTG+GGG | + | chr3.3:64424006-64424025 | MS.gene35575:CDS | 25.0% |
| !!! | ATAGTCTTACTTCATTTTAG+AGG | + | chr3.3:64423265-64423284 | MS.gene35575:intron | 25.0% |
| AGATCCAAAAATTCAAGCTT+TGG | - | chr3.3:64423933-64423952 | None:intergenic | 30.0% | |
| ATAGATGATGAGCTTGAATT+TGG | + | chr3.3:64424170-64424189 | MS.gene35575:CDS | 30.0% | |
| ATCTTGAAATGGCTTATCAT+AGG | + | chr3.3:64423868-64423887 | MS.gene35575:CDS | 30.0% | |
| ATGCTTATCAGTAAAAGTTG+TGG | + | chr3.3:64423158-64423177 | MS.gene35575:CDS | 30.0% | |
| GTGAGCTATTGTATCAAAAT+TGG | + | chr3.3:64423702-64423721 | MS.gene35575:CDS | 30.0% | |
| TTCAGCAATGAAAGTGAAAA+TGG | - | chr3.3:64423225-64423244 | None:intergenic | 30.0% | |
| ! | AATTGATTCCTGATGCATTA+GGG | + | chr3.3:64422973-64422992 | MS.gene35575:CDS | 30.0% |
| ! | ACTTGATTTTTGAATGCTGA+TGG | + | chr3.3:64423374-64423393 | MS.gene35575:intron | 30.0% |
| !! | TATGTTGATGATGATAGTGA+TGG | + | chr3.3:64424134-64424153 | MS.gene35575:CDS | 30.0% |
| ATAGTGATGGTTATGAAGGA+AGG | + | chr3.3:64424147-64424166 | MS.gene35575:CDS | 35.0% | |
| ATTTCAAGATGCTTGAGCTT+CGG | - | chr3.3:64423858-64423877 | None:intergenic | 35.0% | |
| TAGAAGATGCAGGAATGTAT+TGG | + | chr3.3:64424207-64424226 | MS.gene35575:CDS | 35.0% | |
| TATCAGATGAGTATCTAGCT+TGG | + | chr3.3:64424087-64424106 | MS.gene35575:CDS | 35.0% | |
| TCATAAGCACCAAGAACAAA+AGG | - | chr3.3:64424032-64424051 | None:intergenic | 35.0% | |
| TCTATCTCTTGCCAACAATT+AGG | - | chr3.3:64423083-64423102 | None:intergenic | 35.0% | |
| TTATCATAGGATCAGCACTT+CGG | + | chr3.3:64423881-64423900 | MS.gene35575:CDS | 35.0% | |
| ! | ATCAGATGAGTATCTAGCTT+GGG | + | chr3.3:64424088-64424107 | MS.gene35575:CDS | 35.0% |
| ! | ATTGATTCCTGATGCATTAG+GGG | + | chr3.3:64422974-64422993 | MS.gene35575:CDS | 35.0% |
| ! | CTGTCCAAAGCTTGAATTTT+TGG | + | chr3.3:64423926-64423945 | MS.gene35575:CDS | 35.0% |
| ! | GAATTGATTCCTGATGCATT+AGG | + | chr3.3:64422972-64422991 | MS.gene35575:CDS | 35.0% |
| ! | GATGATAGTGATGGTTATGA+AGG | + | chr3.3:64424143-64424162 | MS.gene35575:CDS | 35.0% |
| ! | TATGAAGGTATAGAAGATGC+AGG | + | chr3.3:64424197-64424216 | MS.gene35575:CDS | 35.0% |
| ! | TTATACTCTTTTGCAAGTGC+TGG | + | chr3.3:64423585-64423604 | MS.gene35575:intron | 35.0% |
| ! | TTCCAAGGGTATGTAAATCA+TGG | + | chr3.3:64423039-64423058 | MS.gene35575:CDS | 35.0% |
| !! | AGCTTGAATTTTTGGATCTG+AGG | + | chr3.3:64423934-64423953 | MS.gene35575:CDS | 35.0% |
| !! | CTTGAATTTTTGGATCTGAG+GGG | + | chr3.3:64423936-64423955 | MS.gene35575:CDS | 35.0% |
| !! | GCTTGAATTTTTGGATCTGA+GGG | + | chr3.3:64423935-64423954 | MS.gene35575:CDS | 35.0% |
| !!! | TTGCTGATTTGTTTTCGTCT+AGG | - | chr3.3:64423977-64423996 | None:intergenic | 35.0% |
| AAATCGCTCATATTGCTCCT+TGG | - | chr3.3:64423633-64423652 | None:intergenic | 40.0% | |
| AACTGCTAGAAGAGTTGTGT+AGG | + | chr3.3:64423760-64423779 | MS.gene35575:CDS | 40.0% | |
| AAGCAGGTGAATTACGAAGT+TGG | + | chr3.3:64422946-64422965 | MS.gene35575:CDS | 40.0% | |
| AAGGAGCAATATGAGCGATT+TGG | + | chr3.3:64423632-64423651 | MS.gene35575:CDS | 40.0% | |
| AGCAGGTGAATTACGAAGTT+GGG | + | chr3.3:64422947-64422966 | MS.gene35575:CDS | 40.0% | |
| AGCATCTGATCAAGTTTGTC+AGG | - | chr3.3:64423134-64423153 | None:intergenic | 40.0% | |
| CACCATGATTTACATACCCT+TGG | - | chr3.3:64423044-64423063 | None:intergenic | 40.0% | |
| GAAGCTCAAGCATCTTGAAA+TGG | + | chr3.3:64423857-64423876 | MS.gene35575:CDS | 40.0% | |
| GTGTAGGAATATGCATCCAT+TGG | + | chr3.3:64423776-64423795 | MS.gene35575:CDS | 40.0% | |
| TATCATAGGATCAGCACTTC+GGG | + | chr3.3:64423882-64423901 | MS.gene35575:CDS | 40.0% | |
| TATGCCTCGTCATCTTGTAA+TGG | - | chr3.3:64423816-64423835 | None:intergenic | 40.0% | |
| TCATGGTGTAAAGCAGTTTC+TGG | + | chr3.3:64423056-64423075 | MS.gene35575:CDS | 40.0% | |
| TCTGATCAAGTTTGTCAGGT+TGG | - | chr3.3:64423130-64423149 | None:intergenic | 40.0% | |
| TGAATGCTGATGGTTCATGA+AGG | + | chr3.3:64423384-64423403 | MS.gene35575:intron | 40.0% | |
| TGCTTATGAGAGTGATGGTT+GGG | + | chr3.3:64424043-64424062 | MS.gene35575:CDS | 40.0% | |
| ! | CAGTTTCTGGACCTAATTGT+TGG | + | chr3.3:64423069-64423088 | MS.gene35575:CDS | 40.0% |
| !! | CAATATGAGCGATTTGGTTG+TGG | + | chr3.3:64423638-64423657 | MS.gene35575:CDS | 40.0% |
| !! | GGCCCCAAAACTTTAAGTTT+TGG | - | chr3.3:64424011-64424030 | None:intergenic | 40.0% |
| AAGATCACCCCTAATGCATC+AGG | - | chr3.3:64422984-64423003 | None:intergenic | 45.0% | |
| AGAGAGTGACAGTGATTCCA+AGG | + | chr3.3:64423024-64423043 | MS.gene35575:CDS | 45.0% | |
| ATCATAGGATCAGCACTTCG+GGG | + | chr3.3:64423883-64423902 | MS.gene35575:CDS | 45.0% | |
| CAAGCCATTACAAGATGACG+AGG | + | chr3.3:64423809-64423828 | MS.gene35575:CDS | 45.0% | |
| CTCAGAAAGCTGTGTGTTTC+TGG | + | chr3.3:64423185-64423204 | MS.gene35575:CDS | 45.0% | |
| GAGAGTGACAGTGATTCCAA+GGG | + | chr3.3:64423025-64423044 | MS.gene35575:CDS | 45.0% | |
| GCGTGTGCAATTGAGATGAT+AGG | + | chr3.3:64423726-64423745 | MS.gene35575:CDS | 45.0% | |
| GTGCTTATGAGAGTGATGGT+TGG | + | chr3.3:64424042-64424061 | MS.gene35575:CDS | 45.0% | |
| TGGTAGTCTCAAACTCCGAA+GGG | - | chr3.3:64423613-64423632 | None:intergenic | 45.0% | |
| TTGGTTGTGGAACAGATTGC+TGG | + | chr3.3:64423651-64423670 | MS.gene35575:CDS | 45.0% | |
| TTTGGATCTGAGGGGTTGTT+GGG | + | chr3.3:64423944-64423963 | MS.gene35575:CDS | 45.0% | |
| ! | CTAGCTTGGGATTTTGTAGC+TGG | + | chr3.3:64424101-64424120 | MS.gene35575:CDS | 45.0% |
| ! | GTCATCTTGTAATGGCTTGC+CGG | - | chr3.3:64423808-64423827 | None:intergenic | 45.0% |
| ! | TTCGGAGTTTGAGACTACCA+AGG | + | chr3.3:64423613-64423632 | MS.gene35575:CDS | 45.0% |
| ! | TTGGTAGTCTCAAACTCCGA+AGG | - | chr3.3:64423614-64423633 | None:intergenic | 45.0% |
| ! | TTTTGGATCTGAGGGGTTGT+TGG | + | chr3.3:64423943-64423962 | MS.gene35575:CDS | 45.0% |
| !! | CTTGGTGCTTATGAGAGTGA+TGG | + | chr3.3:64424038-64424057 | MS.gene35575:CDS | 45.0% |
| !!! | GTTTTGGGGCCTTTTGTTCT+TGG | + | chr3.3:64424020-64424039 | MS.gene35575:CDS | 45.0% |
| ATGCATCCATTGGATACCGC+CGG | + | chr3.3:64423786-64423805 | MS.gene35575:CDS | 50.0% | |
| ATGCTTGAGCTTCGGCATTG+TGG | - | chr3.3:64423850-64423869 | None:intergenic | 50.0% | |
| TCATAGGATCAGCACTTCGG+GGG | + | chr3.3:64423884-64423903 | MS.gene35575:CDS | 50.0% | |
| TTGGATCTGAGGGGTTGTTG+GGG | + | chr3.3:64423945-64423964 | MS.gene35575:CDS | 50.0% | |
| ! | ATCTTGTAATGGCTTGCCGG+CGG | - | chr3.3:64423805-64423824 | None:intergenic | 50.0% |
| !! | TTGCAAGTGCTGGTTCCCTT+CGG | + | chr3.3:64423595-64423614 | MS.gene35575:intron | 50.0% |
| GGCTTGCCGGCGGTATCCAA+TGG | - | chr3.3:64423795-64423814 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 64422939 | 64424244 | 64422939 | ID=MS.gene35575 |
| chr3.3 | mRNA | 64422939 | 64424244 | 64422939 | ID=MS.gene35575.t1;Parent=MS.gene35575 |
| chr3.3 | exon | 64422939 | 64423246 | 64422939 | ID=MS.gene35575.t1.exon1;Parent=MS.gene35575.t1 |
| chr3.3 | CDS | 64422939 | 64423246 | 64422939 | ID=cds.MS.gene35575.t1;Parent=MS.gene35575.t1 |
| chr3.3 | exon | 64423602 | 64424244 | 64423602 | ID=MS.gene35575.t1.exon2;Parent=MS.gene35575.t1 |
| chr3.3 | CDS | 64423602 | 64424244 | 64423602 | ID=cds.MS.gene35575.t1;Parent=MS.gene35575.t1 |
| Gene Sequence |
| Protein sequence |
