Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29807.t1 | XP_013460926.1 | 99.4 | 316 | 2 | 0 | 1 | 316 | 1 | 316 | 1.10E-185 | 659.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29807.t1 | Q9ZPE4 | 55.4 | 323 | 131 | 6 | 1 | 316 | 1 | 317 | 2.8e-94 | 346.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29807.t1 | A0A072V9V7 | 99.4 | 316 | 2 | 0 | 1 | 316 | 1 | 316 | 7.6e-186 | 659.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049142 | MS.gene29807 | 0.838665 | 2.51E-57 | -1.69E-46 |
| MS.gene049254 | MS.gene29807 | 0.833766 | 4.42E-56 | -1.69E-46 |
| MS.gene049350 | MS.gene29807 | 0.867552 | 1.26E-65 | -1.69E-46 |
| MS.gene049368 | MS.gene29807 | 0.819021 | 1.45E-52 | -1.69E-46 |
| MS.gene049404 | MS.gene29807 | 0.816174 | 6.34E-52 | -1.69E-46 |
| MS.gene049672 | MS.gene29807 | 0.800277 | 1.55E-48 | -1.69E-46 |
| MS.gene049711 | MS.gene29807 | 0.868918 | 4.57E-66 | -1.69E-46 |
| MS.gene049807 | MS.gene29807 | 0.830878 | 2.29E-55 | -1.69E-46 |
| MS.gene049808 | MS.gene29807 | 0.804933 | 1.70E-49 | -1.69E-46 |
| MS.gene049821 | MS.gene29807 | 0.842067 | 3.24E-58 | -1.69E-46 |
| MS.gene049824 | MS.gene29807 | 0.820638 | 6.17E-53 | -1.69E-46 |
| MS.gene049825 | MS.gene29807 | 0.829162 | 6.01E-55 | -1.69E-46 |
| MS.gene049850 | MS.gene29807 | 0.852382 | 4.79E-61 | -1.69E-46 |
| MS.gene049873 | MS.gene29807 | 0.81351 | 2.47E-51 | -1.69E-46 |
| MS.gene050125 | MS.gene29807 | 0.804079 | 2.57E-49 | -1.69E-46 |
| MS.gene050156 | MS.gene29807 | 0.804688 | 1.92E-49 | -1.69E-46 |
| MS.gene050237 | MS.gene29807 | 0.813873 | 2.05E-51 | -1.69E-46 |
| MS.gene050253 | MS.gene29807 | 0.808615 | 2.84E-50 | -1.69E-46 |
| MS.gene05045 | MS.gene29807 | 0.820427 | 6.90E-53 | -1.69E-46 |
| MS.gene050559 | MS.gene29807 | 0.815436 | 9.26E-52 | -1.69E-46 |
| MS.gene050561 | MS.gene29807 | 0.810348 | 1.21E-50 | -1.69E-46 |
| MS.gene050562 | MS.gene29807 | 0.800689 | 1.28E-48 | -1.69E-46 |
| MS.gene050807 | MS.gene29807 | 0.829498 | 4.98E-55 | -1.69E-46 |
| MS.gene050808 | MS.gene29807 | 0.803264 | 3.79E-49 | -1.69E-46 |
| MS.gene050901 | MS.gene29807 | 0.82666 | 2.40E-54 | -1.69E-46 |
| MS.gene051018 | MS.gene29807 | 0.804758 | 1.85E-49 | -1.69E-46 |
| MS.gene051247 | MS.gene29807 | 0.846648 | 1.90E-59 | -1.69E-46 |
| MS.gene051279 | MS.gene29807 | 0.840723 | 7.32E-58 | -1.69E-46 |
| MS.gene051328 | MS.gene29807 | 0.815967 | 7.05E-52 | -1.69E-46 |
| MS.gene051388 | MS.gene29807 | 0.816259 | 6.06E-52 | -1.69E-46 |
| MS.gene05157 | MS.gene29807 | 0.806566 | 7.73E-50 | -1.69E-46 |
| MS.gene051700 | MS.gene29807 | 0.841718 | 4.01E-58 | -1.69E-46 |
| MS.gene051719 | MS.gene29807 | 0.884192 | 2.36E-71 | -1.69E-46 |
| MS.gene051720 | MS.gene29807 | 0.889136 | 3.17E-73 | -1.69E-46 |
| MS.gene051744 | MS.gene29807 | 0.832565 | 8.79E-56 | -1.69E-46 |
| MS.gene051957 | MS.gene29807 | 0.82789 | 1.22E-54 | -1.69E-46 |
| MS.gene052000 | MS.gene29807 | 0.807678 | 4.50E-50 | -1.69E-46 |
| MS.gene052020 | MS.gene29807 | 0.801817 | 7.53E-49 | -1.69E-46 |
| MS.gene052133 | MS.gene29807 | 0.830037 | 3.68E-55 | -1.69E-46 |
| MS.gene052463 | MS.gene29807 | 0.816114 | 6.53E-52 | -1.69E-46 |
| MS.gene052516 | MS.gene29807 | 0.8612 | 1.21E-63 | -1.69E-46 |
| MS.gene052519 | MS.gene29807 | 0.840861 | 6.74E-58 | -1.69E-46 |
| MS.gene052561 | MS.gene29807 | 0.805373 | 1.38E-49 | -1.69E-46 |
| MS.gene052582 | MS.gene29807 | 0.830035 | 3.68E-55 | -1.69E-46 |
| MS.gene052584 | MS.gene29807 | 0.839031 | 2.02E-57 | -1.69E-46 |
| MS.gene052611 | MS.gene29807 | 0.813519 | 2.46E-51 | -1.69E-46 |
| MS.gene052665 | MS.gene29807 | 0.810675 | 1.02E-50 | -1.69E-46 |
| MS.gene052673 | MS.gene29807 | -0.809458 | 1.87E-50 | -1.69E-46 |
| MS.gene052773 | MS.gene29807 | 0.832726 | 8.02E-56 | -1.69E-46 |
| MS.gene052863 | MS.gene29807 | 0.837743 | 4.34E-57 | -1.69E-46 |
| MS.gene052896 | MS.gene29807 | 0.827775 | 1.30E-54 | -1.69E-46 |
| MS.gene053079 | MS.gene29807 | 0.809538 | 1.80E-50 | -1.69E-46 |
| MS.gene053122 | MS.gene29807 | 0.810521 | 1.11E-50 | -1.69E-46 |
| MS.gene053144 | MS.gene29807 | 0.853347 | 2.54E-61 | -1.69E-46 |
| MS.gene053164 | MS.gene29807 | 0.806183 | 9.31E-50 | -1.69E-46 |
| MS.gene053221 | MS.gene29807 | 0.816912 | 4.33E-52 | -1.69E-46 |
| MS.gene053226 | MS.gene29807 | 0.867561 | 1.25E-65 | -1.69E-46 |
| MS.gene053536 | MS.gene29807 | 0.810202 | 1.30E-50 | -1.69E-46 |
| MS.gene053538 | MS.gene29807 | 0.810641 | 1.04E-50 | -1.69E-46 |
| MS.gene053581 | MS.gene29807 | 0.837019 | 6.65E-57 | -1.69E-46 |
| MS.gene053597 | MS.gene29807 | 0.816017 | 6.87E-52 | -1.69E-46 |
| MS.gene053599 | MS.gene29807 | 0.846234 | 2.47E-59 | -1.69E-46 |
| MS.gene05364 | MS.gene29807 | 0.828944 | 6.78E-55 | -1.69E-46 |
| MS.gene053678 | MS.gene29807 | 0.80991 | 1.50E-50 | -1.69E-46 |
| MS.gene053883 | MS.gene29807 | 0.824003 | 1.02E-53 | -1.69E-46 |
| MS.gene054142 | MS.gene29807 | 0.814164 | 1.77E-51 | -1.69E-46 |
| MS.gene05415 | MS.gene29807 | 0.801225 | 9.96E-49 | -1.69E-46 |
| MS.gene05423 | MS.gene29807 | 0.827158 | 1.83E-54 | -1.69E-46 |
| MS.gene054584 | MS.gene29807 | 0.850723 | 1.41E-60 | -1.69E-46 |
| MS.gene05458 | MS.gene29807 | 0.844588 | 6.89E-59 | -1.69E-46 |
| MS.gene054651 | MS.gene29807 | 0.851043 | 1.15E-60 | -1.69E-46 |
| MS.gene054775 | MS.gene29807 | 0.818746 | 1.67E-52 | -1.69E-46 |
| MS.gene054991 | MS.gene29807 | 0.81438 | 1.59E-51 | -1.69E-46 |
| MS.gene055144 | MS.gene29807 | 0.838206 | 3.30E-57 | -1.69E-46 |
| MS.gene055227 | MS.gene29807 | 0.808779 | 2.62E-50 | -1.69E-46 |
| MS.gene055465 | MS.gene29807 | 0.862685 | 4.25E-64 | -1.69E-46 |
| MS.gene055466 | MS.gene29807 | 0.866597 | 2.54E-65 | -1.69E-46 |
| MS.gene055468 | MS.gene29807 | 0.866906 | 2.02E-65 | -1.69E-46 |
| MS.gene055469 | MS.gene29807 | 0.820036 | 8.48E-53 | -1.69E-46 |
| MS.gene055512 | MS.gene29807 | 0.824852 | 6.45E-54 | -1.69E-46 |
| MS.gene055537 | MS.gene29807 | 0.837798 | 4.20E-57 | -1.69E-46 |
| MS.gene055555 | MS.gene29807 | 0.81075 | 9.87E-51 | -1.69E-46 |
| MS.gene055580 | MS.gene29807 | -0.846721 | 1.82E-59 | -1.69E-46 |
| MS.gene055694 | MS.gene29807 | 0.818519 | 1.88E-52 | -1.69E-46 |
| MS.gene055778 | MS.gene29807 | 0.828483 | 8.77E-55 | -1.69E-46 |
| MS.gene055818 | MS.gene29807 | 0.837181 | 6.05E-57 | -1.69E-46 |
| MS.gene055890 | MS.gene29807 | 0.83628 | 1.03E-56 | -1.69E-46 |
| MS.gene055891 | MS.gene29807 | 0.84335 | 1.48E-58 | -1.69E-46 |
| MS.gene055926 | MS.gene29807 | 0.801692 | 7.99E-49 | -1.69E-46 |
| MS.gene056005 | MS.gene29807 | 0.811879 | 5.61E-51 | -1.69E-46 |
| MS.gene056043 | MS.gene29807 | -0.830169 | 3.42E-55 | -1.69E-46 |
| MS.gene05604 | MS.gene29807 | 0.817846 | 2.67E-52 | -1.69E-46 |
| MS.gene056050 | MS.gene29807 | 0.826533 | 2.58E-54 | -1.69E-46 |
| MS.gene056174 | MS.gene29807 | 0.818344 | 2.06E-52 | -1.69E-46 |
| MS.gene056215 | MS.gene29807 | 0.804413 | 2.19E-49 | -1.69E-46 |
| MS.gene056308 | MS.gene29807 | 0.858201 | 9.69E-63 | -1.69E-46 |
| MS.gene056366 | MS.gene29807 | 0.838685 | 2.48E-57 | -1.69E-46 |
| MS.gene056553 | MS.gene29807 | 0.810423 | 1.16E-50 | -1.69E-46 |
| MS.gene056595 | MS.gene29807 | 0.829109 | 6.19E-55 | -1.69E-46 |
| MS.gene056859 | MS.gene29807 | 0.806747 | 7.08E-50 | -1.69E-46 |
| MS.gene05686 | MS.gene29807 | 0.817544 | 3.12E-52 | -1.69E-46 |
| MS.gene057060 | MS.gene29807 | 0.800398 | 1.47E-48 | -1.69E-46 |
| MS.gene057102 | MS.gene29807 | 0.832589 | 8.67E-56 | -1.69E-46 |
| MS.gene057132 | MS.gene29807 | 0.806674 | 7.34E-50 | -1.69E-46 |
| MS.gene057287 | MS.gene29807 | 0.819086 | 1.40E-52 | -1.69E-46 |
| MS.gene057314 | MS.gene29807 | 0.801257 | 9.81E-49 | -1.69E-46 |
| MS.gene057414 | MS.gene29807 | 0.804887 | 1.74E-49 | -1.69E-46 |
| MS.gene057444 | MS.gene29807 | 0.835664 | 1.47E-56 | -1.69E-46 |
| MS.gene057446 | MS.gene29807 | 0.801823 | 7.51E-49 | -1.69E-46 |
| MS.gene057598 | MS.gene29807 | 0.81097 | 8.84E-51 | -1.69E-46 |
| MS.gene057915 | MS.gene29807 | 0.841293 | 5.19E-58 | -1.69E-46 |
| MS.gene058037 | MS.gene29807 | 0.815524 | 8.84E-52 | -1.69E-46 |
| MS.gene058087 | MS.gene29807 | 0.808038 | 3.77E-50 | -1.69E-46 |
| MS.gene058216 | MS.gene29807 | 0.804014 | 2.65E-49 | -1.69E-46 |
| MS.gene058330 | MS.gene29807 | 0.802901 | 4.50E-49 | -1.69E-46 |
| MS.gene058339 | MS.gene29807 | 0.809053 | 2.29E-50 | -1.69E-46 |
| MS.gene05847 | MS.gene29807 | 0.804962 | 1.68E-49 | -1.69E-46 |
| MS.gene058625 | MS.gene29807 | 0.848693 | 5.21E-60 | -1.69E-46 |
| MS.gene058636 | MS.gene29807 | 0.806982 | 6.31E-50 | -1.69E-46 |
| MS.gene058829 | MS.gene29807 | 0.821892 | 3.17E-53 | -1.69E-46 |
| MS.gene058852 | MS.gene29807 | 0.834413 | 3.04E-56 | -1.69E-46 |
| MS.gene05894 | MS.gene29807 | 0.842285 | 2.84E-58 | -1.69E-46 |
| MS.gene058979 | MS.gene29807 | 0.810936 | 9.00E-51 | -1.69E-46 |
| MS.gene059015 | MS.gene29807 | 0.838053 | 3.61E-57 | -1.69E-46 |
| MS.gene059084 | MS.gene29807 | 0.822823 | 1.93E-53 | -1.69E-46 |
| MS.gene059227 | MS.gene29807 | 0.807362 | 5.25E-50 | -1.69E-46 |
| MS.gene059424 | MS.gene29807 | 0.805069 | 1.59E-49 | -1.69E-46 |
| MS.gene05954 | MS.gene29807 | 0.822086 | 2.86E-53 | -1.69E-46 |
| MS.gene059570 | MS.gene29807 | 0.801262 | 9.78E-49 | -1.69E-46 |
| MS.gene059625 | MS.gene29807 | 0.850294 | 1.86E-60 | -1.69E-46 |
| MS.gene059725 | MS.gene29807 | 0.823682 | 1.21E-53 | -1.69E-46 |
| MS.gene059842 | MS.gene29807 | 0.80033 | 1.52E-48 | -1.69E-46 |
| MS.gene059937 | MS.gene29807 | 0.806262 | 8.96E-50 | -1.69E-46 |
| MS.gene060365 | MS.gene29807 | 0.814518 | 1.48E-51 | -1.69E-46 |
| MS.gene060429 | MS.gene29807 | 0.853711 | 2.00E-61 | -1.69E-46 |
| MS.gene060519 | MS.gene29807 | 0.858487 | 7.96E-63 | -1.69E-46 |
| MS.gene060521 | MS.gene29807 | 0.813259 | 2.80E-51 | -1.69E-46 |
| MS.gene060587 | MS.gene29807 | 0.855598 | 5.67E-62 | -1.69E-46 |
| MS.gene060603 | MS.gene29807 | 0.817045 | 4.04E-52 | -1.69E-46 |
| MS.gene060634 | MS.gene29807 | -0.817693 | 2.89E-52 | -1.69E-46 |
| MS.gene060935 | MS.gene29807 | 0.800412 | 1.46E-48 | -1.69E-46 |
| MS.gene061100 | MS.gene29807 | 0.833199 | 6.12E-56 | -1.69E-46 |
| MS.gene061176 | MS.gene29807 | 0.818383 | 2.02E-52 | -1.69E-46 |
| MS.gene061177 | MS.gene29807 | 0.817409 | 3.35E-52 | -1.69E-46 |
| MS.gene061178 | MS.gene29807 | 0.817843 | 2.67E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29807.t1 | MTR_3g074900 | 99.367 | 316 | 2 | 0 | 1 | 316 | 1 | 316 | 0.0 | 648 |
| MS.gene29807.t1 | MTR_5g064480 | 57.729 | 317 | 132 | 2 | 1 | 316 | 1 | 316 | 5.84e-121 | 350 |
| MS.gene29807.t1 | MTR_5g098180 | 52.542 | 295 | 96 | 6 | 1 | 295 | 1 | 251 | 1.88e-94 | 280 |
| MS.gene29807.t1 | MTR_1g045100 | 34.914 | 232 | 139 | 6 | 9 | 231 | 22 | 250 | 2.64e-30 | 116 |
| MS.gene29807.t1 | MTR_1g044795 | 32.231 | 242 | 153 | 6 | 9 | 242 | 21 | 259 | 7.12e-26 | 104 |
| MS.gene29807.t1 | MTR_8g091730 | 29.565 | 230 | 149 | 4 | 9 | 229 | 22 | 247 | 4.91e-24 | 100 |
| MS.gene29807.t1 | MTR_3g067615 | 29.389 | 262 | 163 | 7 | 9 | 262 | 4 | 251 | 2.12e-23 | 97.8 |
| MS.gene29807.t1 | MTR_3g065610 | 28.980 | 245 | 163 | 7 | 5 | 243 | 18 | 257 | 1.82e-22 | 95.5 |
| MS.gene29807.t1 | MTR_2g018940 | 29.386 | 228 | 156 | 5 | 3 | 228 | 19 | 243 | 3.99e-22 | 95.1 |
| MS.gene29807.t1 | MTR_3g080360 | 27.203 | 261 | 175 | 8 | 2 | 256 | 33 | 284 | 7.42e-22 | 93.6 |
| MS.gene29807.t1 | MTR_2g018950 | 31.092 | 238 | 147 | 7 | 3 | 228 | 18 | 250 | 2.61e-21 | 92.8 |
| MS.gene29807.t1 | MTR_3g065590 | 28.571 | 266 | 177 | 8 | 5 | 262 | 18 | 278 | 4.07e-20 | 89.4 |
| MS.gene29807.t1 | MTR_8g040130 | 26.818 | 220 | 141 | 4 | 9 | 223 | 9 | 213 | 4.64e-20 | 87.4 |
| MS.gene29807.t1 | MTR_3g067630 | 29.730 | 222 | 148 | 6 | 9 | 228 | 20 | 235 | 6.96e-20 | 89.0 |
| MS.gene29807.t1 | MTR_3g067990 | 29.004 | 231 | 132 | 7 | 9 | 231 | 22 | 228 | 9.39e-20 | 87.4 |
| MS.gene29807.t1 | MTR_3g065620 | 28.195 | 266 | 180 | 6 | 9 | 273 | 17 | 272 | 1.09e-19 | 87.4 |
| MS.gene29807.t1 | MTR_3g067625 | 30.631 | 222 | 146 | 6 | 9 | 228 | 20 | 235 | 1.58e-19 | 89.0 |
| MS.gene29807.t1 | MTR_2g018910 | 26.866 | 268 | 179 | 8 | 8 | 262 | 26 | 289 | 1.98e-19 | 87.4 |
| MS.gene29807.t1 | MTR_5g027890 | 27.273 | 231 | 160 | 5 | 2 | 230 | 13 | 237 | 2.14e-19 | 86.3 |
| MS.gene29807.t1 | MTR_3g067645 | 29.386 | 228 | 153 | 5 | 2 | 228 | 14 | 234 | 1.10e-18 | 85.5 |
| MS.gene29807.t1 | MTR_4g130620 | 26.820 | 261 | 160 | 6 | 10 | 242 | 9 | 266 | 8.97e-17 | 79.7 |
| MS.gene29807.t1 | MTR_6g015900 | 26.496 | 234 | 160 | 6 | 2 | 228 | 9 | 237 | 3.19e-16 | 77.8 |
| MS.gene29807.t1 | MTR_6g015890 | 25.271 | 277 | 185 | 8 | 2 | 271 | 12 | 273 | 2.05e-15 | 75.9 |
| MS.gene29807.t1 | MTR_3g080280 | 27.753 | 227 | 157 | 6 | 9 | 234 | 24 | 244 | 2.80e-15 | 75.1 |
| MS.gene29807.t1 | MTR_3g080330 | 25.385 | 260 | 176 | 7 | 9 | 262 | 12 | 259 | 7.59e-15 | 73.6 |
| MS.gene29807.t1 | MTR_3g080310 | 27.197 | 239 | 165 | 5 | 9 | 243 | 12 | 245 | 9.68e-15 | 73.2 |
| MS.gene29807.t1 | MTR_3g065840 | 28.488 | 172 | 118 | 3 | 56 | 225 | 3 | 171 | 3.51e-14 | 70.9 |
| MS.gene29807.t1 | MTR_3g065820 | 26.829 | 246 | 171 | 5 | 9 | 248 | 20 | 262 | 4.71e-14 | 72.0 |
| MS.gene29807.t1 | MTR_3g065890 | 27.376 | 263 | 146 | 8 | 9 | 265 | 15 | 238 | 2.85e-13 | 68.6 |
| MS.gene29807.t1 | MTR_3g065850 | 27.442 | 215 | 152 | 3 | 9 | 221 | 18 | 230 | 4.54e-13 | 68.6 |
| MS.gene29807.t1 | MTR_7g047530 | 34.746 | 118 | 70 | 3 | 111 | 228 | 74 | 184 | 4.89e-13 | 67.8 |
| MS.gene29807.t1 | MTR_5g036740 | 25.095 | 263 | 183 | 6 | 9 | 260 | 12 | 271 | 5.43e-13 | 68.6 |
| MS.gene29807.t1 | MTR_7g451730 | 34.746 | 118 | 70 | 3 | 111 | 228 | 83 | 193 | 6.71e-13 | 67.4 |
| MS.gene29807.t1 | MTR_4g130630 | 27.751 | 209 | 130 | 5 | 10 | 217 | 30 | 218 | 8.52e-13 | 67.0 |
| MS.gene29807.t1 | MTR_3g080320 | 29.221 | 154 | 104 | 3 | 79 | 231 | 12 | 161 | 2.74e-11 | 62.0 |
| MS.gene29807.t1 | MTR_3g065730 | 28.846 | 156 | 102 | 5 | 68 | 221 | 59 | 207 | 3.73e-11 | 62.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29807.t1 | AT4G08980 | 56.481 | 324 | 126 | 8 | 1 | 316 | 1 | 317 | 1.89e-117 | 341 |
| MS.gene29807.t1 | AT4G08980 | 56.481 | 324 | 126 | 8 | 1 | 316 | 1 | 317 | 1.89e-117 | 341 |
| MS.gene29807.t1 | AT4G08980 | 56.481 | 324 | 126 | 8 | 1 | 316 | 1 | 317 | 1.89e-117 | 341 |
| MS.gene29807.t1 | AT4G08980 | 56.481 | 324 | 126 | 8 | 1 | 316 | 1 | 317 | 1.89e-117 | 341 |
| MS.gene29807.t1 | AT4G08980 | 56.481 | 324 | 126 | 8 | 1 | 316 | 1 | 317 | 1.89e-117 | 341 |
| MS.gene29807.t1 | AT4G05460 | 31.834 | 289 | 180 | 8 | 3 | 289 | 12 | 285 | 3.02e-32 | 122 |
| MS.gene29807.t1 | AT5G57900 | 31.381 | 239 | 136 | 6 | 10 | 223 | 8 | 243 | 5.75e-24 | 99.8 |
| MS.gene29807.t1 | AT4G05470 | 30.645 | 248 | 140 | 10 | 6 | 231 | 42 | 279 | 5.44e-22 | 94.4 |
| MS.gene29807.t1 | AT4G05497 | 30.870 | 230 | 148 | 4 | 5 | 228 | 16 | 240 | 6.64e-22 | 92.8 |
| MS.gene29807.t1 | AT4G30640 | 30.126 | 239 | 141 | 6 | 10 | 223 | 20 | 257 | 9.19e-19 | 85.5 |
| MS.gene29807.t1 | AT4G05490 | 29.204 | 226 | 146 | 4 | 9 | 228 | 26 | 243 | 3.26e-18 | 84.0 |
| MS.gene29807.t1 | AT4G05475 | 26.582 | 237 | 153 | 8 | 9 | 231 | 39 | 268 | 4.34e-16 | 77.8 |
| MS.gene29807.t1 | AT4G03630 | 30.675 | 163 | 110 | 3 | 67 | 228 | 24 | 184 | 2.49e-15 | 74.3 |
| MS.gene29807.t1 | AT5G52480 | 34.911 | 169 | 104 | 4 | 76 | 244 | 23 | 185 | 1.26e-14 | 72.8 |
Find 64 sgRNAs with CRISPR-Local
Find 82 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTCAGAAAGCTGTGTGTTTC+TGG | 0.141960 | 3.4:+73157487 | MS.gene29807:CDS |
| ATAGATGATGAGCTTGAATT+TGG | 0.208213 | 3.4:+73158472 | MS.gene29807:CDS |
| TTTGGATCTGAGGGGTTGTT+GGG | 0.263491 | 3.4:+73158246 | MS.gene29807:CDS |
| TCATGGTGTAAAGCAGTTTC+TGG | 0.263962 | 3.4:+73157358 | MS.gene29807:CDS |
| GGCCCCAAAACTTTAAGTTT+TGG | 0.282942 | 3.4:-73158310 | None:intergenic |
| TTCAGCAATGAAAGTGAAAA+TGG | 0.303416 | 3.4:-73157524 | None:intergenic |
| GAATTGATTCCTGATGCATT+AGG | 0.312469 | 3.4:+73157274 | MS.gene29807:CDS |
| TATCATAGGATCAGCACTTC+GGG | 0.323828 | 3.4:+73158184 | MS.gene29807:CDS |
| GTGAGCTATTGTATCAAAAT+TGG | 0.365727 | 3.4:+73158004 | MS.gene29807:CDS |
| TCTATCTCTTGCCAACAATT+AGG | 0.369302 | 3.4:-73157382 | None:intergenic |
| AATTGATTCCTGATGCATTA+GGG | 0.374472 | 3.4:+73157275 | MS.gene29807:CDS |
| GTCATCTTGTAATGGCTTGC+CGG | 0.380621 | 3.4:-73158107 | None:intergenic |
| CACCATGATTTACATACCCT+TGG | 0.409233 | 3.4:-73157343 | None:intergenic |
| AAGGAGCAATATGAGCGATT+TGG | 0.420691 | 3.4:+73157934 | MS.gene29807:CDS |
| TTGGATTTGATGGGAGAAGC+AGG | 0.430121 | 3.4:+73157232 | None:intergenic |
| CTTGAATTTGGATTATATGA+AGG | 0.433911 | 3.4:+73158484 | MS.gene29807:CDS |
| TTGGTTGTGGAACAGATTGC+TGG | 0.436111 | 3.4:+73157953 | MS.gene29807:CDS |
| AGCAGGTGAATTACGAAGTT+GGG | 0.441077 | 3.4:+73157249 | MS.gene29807:CDS |
| AGCATCTGATCAAGTTTGTC+AGG | 0.441867 | 3.4:-73157433 | None:intergenic |
| TTGCAAGTGCTGGTTCCCTT+CGG | 0.442483 | 3.4:+73157897 | MS.gene29807:intron |
| ATTTCAAGATGCTTGAGCTT+CGG | 0.446197 | 3.4:-73158157 | None:intergenic |
| CAGTTTCTGGACCTAATTGT+TGG | 0.459386 | 3.4:+73157371 | MS.gene29807:CDS |
| GAAGCTCAAGCATCTTGAAA+TGG | 0.459501 | 3.4:+73158159 | MS.gene29807:CDS |
| TGCTTATGAGAGTGATGGTT+GGG | 0.462180 | 3.4:+73158345 | MS.gene29807:CDS |
| ATCTTGAAATGGCTTATCAT+AGG | 0.462972 | 3.4:+73158170 | MS.gene29807:CDS |
| AAGATCACCCCTAATGCATC+AGG | 0.469258 | 3.4:-73157283 | None:intergenic |
| TTGGATCTGAGGGGTTGTTG+GGG | 0.470223 | 3.4:+73158247 | MS.gene29807:CDS |
| CAATATGAGCGATTTGGTTG+TGG | 0.479679 | 3.4:+73157940 | MS.gene29807:CDS |
| TAGAAGATGCAGGAATGTAT+TGG | 0.493202 | 3.4:+73158509 | MS.gene29807:CDS |
| ATCAGATGAGTATCTAGCTT+GGG | 0.501324 | 3.4:+73158390 | MS.gene29807:CDS |
| TCATAAGCACCAAGAACAAA+AGG | 0.501629 | 3.4:-73158331 | None:intergenic |
| AGAGAGTGACAGTGATTCCA+AGG | 0.502069 | 3.4:+73157326 | MS.gene29807:CDS |
| AAGCAGGTGAATTACGAAGT+TGG | 0.504117 | 3.4:+73157248 | MS.gene29807:CDS |
| GCGTGTGCAATTGAGATGAT+AGG | 0.513987 | 3.4:+73158028 | MS.gene29807:CDS |
| TCTGATCAAGTTTGTCAGGT+TGG | 0.524395 | 3.4:-73157429 | None:intergenic |
| ATACAATCAAATTATGGTGA+TGG | 0.527049 | 3.4:-73158535 | None:intergenic |
| AAATCGCTCATATTGCTCCT+TGG | 0.539756 | 3.4:-73157932 | None:intergenic |
| CTTGGTGCTTATGAGAGTGA+TGG | 0.542339 | 3.4:+73158340 | MS.gene29807:CDS |
| GGCTTGCCGGCGGTATCCAA+TGG | 0.545652 | 3.4:-73158094 | None:intergenic |
| ATAGTGATGGTTATGAAGGA+AGG | 0.546896 | 3.4:+73158449 | MS.gene29807:CDS |
| TATGAAGGTATAGAAGATGC+AGG | 0.548479 | 3.4:+73158499 | MS.gene29807:CDS |
| GATGATAGTGATGGTTATGA+AGG | 0.552809 | 3.4:+73158445 | MS.gene29807:CDS |
| TTATCATAGGATCAGCACTT+CGG | 0.552891 | 3.4:+73158183 | MS.gene29807:CDS |
| TATGCCTCGTCATCTTGTAA+TGG | 0.553402 | 3.4:-73158115 | None:intergenic |
| TATCAGATGAGTATCTAGCT+TGG | 0.554785 | 3.4:+73158389 | MS.gene29807:CDS |
| TTCCAAGGGTATGTAAATCA+TGG | 0.555605 | 3.4:+73157341 | MS.gene29807:CDS |
| CAATCAAATTATGGTGATGG+AGG | 0.576770 | 3.4:-73158532 | None:intergenic |
| TTGGTAGTCTCAAACTCCGA+AGG | 0.580644 | 3.4:-73157913 | None:intergenic |
| ATGCTTATCAGTAAAAGTTG+TGG | 0.582915 | 3.4:+73157460 | MS.gene29807:CDS |
| AAGAGATAGATATTGAAGAA+TGG | 0.583086 | 3.4:+73157395 | MS.gene29807:CDS |
| ATGCATCCATTGGATACCGC+CGG | 0.587177 | 3.4:+73158088 | MS.gene29807:CDS |
| GTGTAGGAATATGCATCCAT+TGG | 0.590372 | 3.4:+73158078 | MS.gene29807:CDS |
| AACTGCTAGAAGAGTTGTGT+AGG | 0.601293 | 3.4:+73158062 | MS.gene29807:CDS |
| ATCATAGGATCAGCACTTCG+GGG | 0.610680 | 3.4:+73158185 | MS.gene29807:CDS |
| ATGCTTGAGCTTCGGCATTG+TGG | 0.616375 | 3.4:-73158149 | None:intergenic |
| TGGTAGTCTCAAACTCCGAA+GGG | 0.622847 | 3.4:-73157912 | None:intergenic |
| TCATAGGATCAGCACTTCGG+GGG | 0.633493 | 3.4:+73158186 | MS.gene29807:CDS |
| GTGCTTATGAGAGTGATGGT+TGG | 0.638986 | 3.4:+73158344 | MS.gene29807:CDS |
| CAAGCCATTACAAGATGACG+AGG | 0.644746 | 3.4:+73158111 | MS.gene29807:CDS |
| GAGAGTGACAGTGATTCCAA+GGG | 0.645348 | 3.4:+73157327 | MS.gene29807:CDS |
| ATCTTGTAATGGCTTGCCGG+CGG | 0.652260 | 3.4:-73158104 | None:intergenic |
| TATGTTGATGATGATAGTGA+TGG | 0.653534 | 3.4:+73158436 | MS.gene29807:CDS |
| ATTGATTCCTGATGCATTAG+GGG | 0.669573 | 3.4:+73157276 | MS.gene29807:CDS |
| TTCGGAGTTTGAGACTACCA+AGG | 0.691268 | 3.4:+73157915 | MS.gene29807:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AGATGAAAAAACATAAAATT+TGG | + | chr3.4:73157760-73157779 | MS.gene29807:intron | 15.0% |
| !! | TTGTTAAAATGTTTAACACA+AGG | + | chr3.4:73157640-73157659 | MS.gene29807:intron | 20.0% |
| !!! | ATTTCATTTTTCTTTCTTAC+TGG | + | chr3.4:73157829-73157848 | MS.gene29807:intron | 20.0% |
| !!! | ATTTTCTATGATAACTTTCT+TGG | + | chr3.4:73157979-73157998 | MS.gene29807:CDS | 20.0% |
| !!! | TTTCCAAAACTTAAAGTTTT+GGG | + | chr3.4:73158307-73158326 | MS.gene29807:CDS | 20.0% |
| !!! | TTTTCCAAAACTTAAAGTTT+TGG | + | chr3.4:73158306-73158325 | MS.gene29807:CDS | 20.0% |
| ! | AAGAGATAGATATTGAAGAA+TGG | + | chr3.4:73157395-73157414 | MS.gene29807:CDS | 25.0% |
| ! | CTTGAATTTGGATTATATGA+AGG | + | chr3.4:73158484-73158503 | MS.gene29807:CDS | 25.0% |
| !! | TCTAAAATGAAGTAAGACTA+TGG | - | chr3.4:73157568-73157587 | None:intergenic | 25.0% |
| !! | TTCCAAAACTTAAAGTTTTG+GGG | + | chr3.4:73158308-73158327 | MS.gene29807:CDS | 25.0% |
| !!! | ATAGTCTTACTTCATTTTAG+AGG | + | chr3.4:73157567-73157586 | MS.gene29807:intron | 25.0% |
| AGATCCAAAAATTCAAGCTT+TGG | - | chr3.4:73158235-73158254 | None:intergenic | 30.0% | |
| ATAGATGATGAGCTTGAATT+TGG | + | chr3.4:73158472-73158491 | MS.gene29807:CDS | 30.0% | |
| ATCTTGAAATGGCTTATCAT+AGG | + | chr3.4:73158170-73158189 | MS.gene29807:CDS | 30.0% | |
| ATGCTTATCAGTAAAAGTTG+TGG | + | chr3.4:73157460-73157479 | MS.gene29807:CDS | 30.0% | |
| GTGAGCTATTGTATCAAAAT+TGG | + | chr3.4:73158004-73158023 | MS.gene29807:CDS | 30.0% | |
| TTCAGCAATGAAAGTGAAAA+TGG | - | chr3.4:73157527-73157546 | None:intergenic | 30.0% | |
| ! | AATTGATTCCTGATGCATTA+GGG | + | chr3.4:73157275-73157294 | MS.gene29807:CDS | 30.0% |
| ! | ACTTGATTTTTGAATGCTGA+TGG | + | chr3.4:73157676-73157695 | MS.gene29807:intron | 30.0% |
| !! | TATGTTGATGATGATAGTGA+TGG | + | chr3.4:73158436-73158455 | MS.gene29807:CDS | 30.0% |
| ATAGTGATGGTTATGAAGGA+AGG | + | chr3.4:73158449-73158468 | MS.gene29807:CDS | 35.0% | |
| ATTTCAAGATGCTTGAGCTT+CGG | - | chr3.4:73158160-73158179 | None:intergenic | 35.0% | |
| TAGAAGATGCAGGAATGTAT+TGG | + | chr3.4:73158509-73158528 | MS.gene29807:CDS | 35.0% | |
| TATCAGATGAGTATCTAGCT+TGG | + | chr3.4:73158389-73158408 | MS.gene29807:CDS | 35.0% | |
| TCATAAGCACCAAGAACAAA+AGG | - | chr3.4:73158334-73158353 | None:intergenic | 35.0% | |
| TCTATCTCTTGCCAACAATT+AGG | - | chr3.4:73157385-73157404 | None:intergenic | 35.0% | |
| TTATCATAGGATCAGCACTT+CGG | + | chr3.4:73158183-73158202 | MS.gene29807:CDS | 35.0% | |
| ! | ATCAGATGAGTATCTAGCTT+GGG | + | chr3.4:73158390-73158409 | MS.gene29807:CDS | 35.0% |
| ! | ATTGATTCCTGATGCATTAG+GGG | + | chr3.4:73157276-73157295 | MS.gene29807:CDS | 35.0% |
| ! | CTGTCCAAAGCTTGAATTTT+TGG | + | chr3.4:73158228-73158247 | MS.gene29807:CDS | 35.0% |
| ! | GAATTGATTCCTGATGCATT+AGG | + | chr3.4:73157274-73157293 | MS.gene29807:CDS | 35.0% |
| ! | GATGATAGTGATGGTTATGA+AGG | + | chr3.4:73158445-73158464 | MS.gene29807:CDS | 35.0% |
| ! | TATGAAGGTATAGAAGATGC+AGG | + | chr3.4:73158499-73158518 | MS.gene29807:CDS | 35.0% |
| ! | TTATACTCTTTTGCAAGTGC+TGG | + | chr3.4:73157887-73157906 | MS.gene29807:intron | 35.0% |
| ! | TTCCAAGGGTATGTAAATCA+TGG | + | chr3.4:73157341-73157360 | MS.gene29807:CDS | 35.0% |
| !! | AGCTTGAATTTTTGGATCTG+AGG | + | chr3.4:73158236-73158255 | MS.gene29807:CDS | 35.0% |
| !! | CTTGAATTTTTGGATCTGAG+GGG | + | chr3.4:73158238-73158257 | MS.gene29807:CDS | 35.0% |
| !! | GCTTGAATTTTTGGATCTGA+GGG | + | chr3.4:73158237-73158256 | MS.gene29807:CDS | 35.0% |
| !!! | TTGCTGATTTGTTTTCGTCT+AGG | - | chr3.4:73158279-73158298 | None:intergenic | 35.0% |
| AAATCGCTCATATTGCTCCT+TGG | - | chr3.4:73157935-73157954 | None:intergenic | 40.0% | |
| AACTGCTAGAAGAGTTGTGT+AGG | + | chr3.4:73158062-73158081 | MS.gene29807:CDS | 40.0% | |
| AAGCAGGTGAATTACGAAGT+TGG | + | chr3.4:73157248-73157267 | MS.gene29807:CDS | 40.0% | |
| AAGGAGCAATATGAGCGATT+TGG | + | chr3.4:73157934-73157953 | MS.gene29807:CDS | 40.0% | |
| AGCAGGTGAATTACGAAGTT+GGG | + | chr3.4:73157249-73157268 | MS.gene29807:CDS | 40.0% | |
| AGCATCTGATCAAGTTTGTC+AGG | - | chr3.4:73157436-73157455 | None:intergenic | 40.0% | |
| CACCATGATTTACATACCCT+TGG | - | chr3.4:73157346-73157365 | None:intergenic | 40.0% | |
| GAAGCTCAAGCATCTTGAAA+TGG | + | chr3.4:73158159-73158178 | MS.gene29807:CDS | 40.0% | |
| GTGTAGGAATATGCATCCAT+TGG | + | chr3.4:73158078-73158097 | MS.gene29807:CDS | 40.0% | |
| TATCATAGGATCAGCACTTC+GGG | + | chr3.4:73158184-73158203 | MS.gene29807:CDS | 40.0% | |
| TATGCCTCGTCATCTTGTAA+TGG | - | chr3.4:73158118-73158137 | None:intergenic | 40.0% | |
| TCATGGTGTAAAGCAGTTTC+TGG | + | chr3.4:73157358-73157377 | MS.gene29807:CDS | 40.0% | |
| TCTGATCAAGTTTGTCAGGT+TGG | - | chr3.4:73157432-73157451 | None:intergenic | 40.0% | |
| TGAATGCTGATGGTTCATGA+AGG | + | chr3.4:73157686-73157705 | MS.gene29807:intron | 40.0% | |
| TGCTTATGAGAGTGATGGTT+GGG | + | chr3.4:73158345-73158364 | MS.gene29807:CDS | 40.0% | |
| ! | CAGTTTCTGGACCTAATTGT+TGG | + | chr3.4:73157371-73157390 | MS.gene29807:CDS | 40.0% |
| !! | CAATATGAGCGATTTGGTTG+TGG | + | chr3.4:73157940-73157959 | MS.gene29807:CDS | 40.0% |
| !! | GGCCCCAAAACTTTAAGTTT+TGG | - | chr3.4:73158313-73158332 | None:intergenic | 40.0% |
| AAGATCACCCCTAATGCATC+AGG | - | chr3.4:73157286-73157305 | None:intergenic | 45.0% | |
| AGAGAGTGACAGTGATTCCA+AGG | + | chr3.4:73157326-73157345 | MS.gene29807:CDS | 45.0% | |
| ATCATAGGATCAGCACTTCG+GGG | + | chr3.4:73158185-73158204 | MS.gene29807:CDS | 45.0% | |
| CAAGCCATTACAAGATGACG+AGG | + | chr3.4:73158111-73158130 | MS.gene29807:CDS | 45.0% | |
| CTCAGAAAGCTGTGTGTTTC+TGG | + | chr3.4:73157487-73157506 | MS.gene29807:CDS | 45.0% | |
| GAGAGTGACAGTGATTCCAA+GGG | + | chr3.4:73157327-73157346 | MS.gene29807:CDS | 45.0% | |
| GCGTGTGCAATTGAGATGAT+AGG | + | chr3.4:73158028-73158047 | MS.gene29807:CDS | 45.0% | |
| GTGCTTATGAGAGTGATGGT+TGG | + | chr3.4:73158344-73158363 | MS.gene29807:CDS | 45.0% | |
| TGGTAGTCTCAAACTCCGAA+GGG | - | chr3.4:73157915-73157934 | None:intergenic | 45.0% | |
| TTGGTTGTGGAACAGATTGC+TGG | + | chr3.4:73157953-73157972 | MS.gene29807:CDS | 45.0% | |
| TTTGGATCTGAGGGGTTGTT+GGG | + | chr3.4:73158246-73158265 | MS.gene29807:CDS | 45.0% | |
| ! | CTAGCTTGGGATTTTGTAGC+TGG | + | chr3.4:73158403-73158422 | MS.gene29807:CDS | 45.0% |
| ! | GTCATCTTGTAATGGCTTGC+CGG | - | chr3.4:73158110-73158129 | None:intergenic | 45.0% |
| ! | TTCGGAGTTTGAGACTACCA+AGG | + | chr3.4:73157915-73157934 | MS.gene29807:CDS | 45.0% |
| ! | TTGGTAGTCTCAAACTCCGA+AGG | - | chr3.4:73157916-73157935 | None:intergenic | 45.0% |
| ! | TTTTGGATCTGAGGGGTTGT+TGG | + | chr3.4:73158245-73158264 | MS.gene29807:CDS | 45.0% |
| !! | CTTGGTGCTTATGAGAGTGA+TGG | + | chr3.4:73158340-73158359 | MS.gene29807:CDS | 45.0% |
| !!! | GTTTTGGGGCCTTTTGTTCT+TGG | + | chr3.4:73158322-73158341 | MS.gene29807:CDS | 45.0% |
| ATGCATCCATTGGATACCGC+CGG | + | chr3.4:73158088-73158107 | MS.gene29807:CDS | 50.0% | |
| ATGCTTGAGCTTCGGCATTG+TGG | - | chr3.4:73158152-73158171 | None:intergenic | 50.0% | |
| TCATAGGATCAGCACTTCGG+GGG | + | chr3.4:73158186-73158205 | MS.gene29807:CDS | 50.0% | |
| TTGGATCTGAGGGGTTGTTG+GGG | + | chr3.4:73158247-73158266 | MS.gene29807:CDS | 50.0% | |
| ! | ATCTTGTAATGGCTTGCCGG+CGG | - | chr3.4:73158107-73158126 | None:intergenic | 50.0% |
| !! | TTGCAAGTGCTGGTTCCCTT+CGG | + | chr3.4:73157897-73157916 | MS.gene29807:intron | 50.0% |
| GGCTTGCCGGCGGTATCCAA+TGG | - | chr3.4:73158097-73158116 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 73157241 | 73158546 | 73157241 | ID=MS.gene29807 |
| chr3.4 | mRNA | 73157241 | 73158546 | 73157241 | ID=MS.gene29807.t1;Parent=MS.gene29807 |
| chr3.4 | exon | 73157241 | 73157548 | 73157241 | ID=MS.gene29807.t1.exon1;Parent=MS.gene29807.t1 |
| chr3.4 | CDS | 73157241 | 73157548 | 73157241 | ID=cds.MS.gene29807.t1;Parent=MS.gene29807.t1 |
| chr3.4 | exon | 73157904 | 73158546 | 73157904 | ID=MS.gene29807.t1.exon2;Parent=MS.gene29807.t1 |
| chr3.4 | CDS | 73157904 | 73158546 | 73157904 | ID=cds.MS.gene29807.t1;Parent=MS.gene29807.t1 |
| Gene Sequence |
| Protein sequence |
