Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene98394.t1 | XP_013463688.1 | 98.8 | 164 | 2 | 0 | 1 | 164 | 1 | 164 | 6.50E-86 | 326.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene98394.t1 | B7FGQ9 | 98.8 | 164 | 2 | 0 | 1 | 164 | 1 | 164 | 4.7e-86 | 326.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049142 | MS.gene98394 | 0.855088 | 7.97E-62 | -1.69E-46 |
| MS.gene049159 | MS.gene98394 | 0.8544 | 1.26E-61 | -1.69E-46 |
| MS.gene04918 | MS.gene98394 | 0.808081 | 3.69E-50 | -1.69E-46 |
| MS.gene049254 | MS.gene98394 | 0.851892 | 6.60E-61 | -1.69E-46 |
| MS.gene049350 | MS.gene98394 | 0.805905 | 1.07E-49 | -1.69E-46 |
| MS.gene049404 | MS.gene98394 | 0.849595 | 2.92E-60 | -1.69E-46 |
| MS.gene049435 | MS.gene98394 | 0.802457 | 5.56E-49 | -1.69E-46 |
| MS.gene049452 | MS.gene98394 | 0.82786 | 1.24E-54 | -1.69E-46 |
| MS.gene049499 | MS.gene98394 | 0.80641 | 8.34E-50 | -1.69E-46 |
| MS.gene049501 | MS.gene98394 | 0.841791 | 3.83E-58 | -1.69E-46 |
| MS.gene049647 | MS.gene98394 | 0.818315 | 2.09E-52 | -1.69E-46 |
| MS.gene049711 | MS.gene98394 | 0.831327 | 1.78E-55 | -1.69E-46 |
| MS.gene049807 | MS.gene98394 | 0.803977 | 2.69E-49 | -1.69E-46 |
| MS.gene049821 | MS.gene98394 | 0.830448 | 2.92E-55 | -1.69E-46 |
| MS.gene049850 | MS.gene98394 | 0.813261 | 2.80E-51 | -1.69E-46 |
| MS.gene049983 | MS.gene98394 | 0.84609 | 2.70E-59 | -1.69E-46 |
| MS.gene050026 | MS.gene98394 | 0.810175 | 1.31E-50 | -1.69E-46 |
| MS.gene050237 | MS.gene98394 | 0.81724 | 3.65E-52 | -1.69E-46 |
| MS.gene050273 | MS.gene98394 | 0.846241 | 2.46E-59 | -1.69E-46 |
| MS.gene050442 | MS.gene98394 | 0.811399 | 7.14E-51 | -1.69E-46 |
| MS.gene050559 | MS.gene98394 | 0.826092 | 3.28E-54 | -1.69E-46 |
| MS.gene050561 | MS.gene98394 | 0.82494 | 6.15E-54 | -1.69E-46 |
| MS.gene050562 | MS.gene98394 | 0.813296 | 2.75E-51 | -1.69E-46 |
| MS.gene050654 | MS.gene98394 | 0.805078 | 1.59E-49 | -1.69E-46 |
| MS.gene050689 | MS.gene98394 | 0.801947 | 7.08E-49 | -1.69E-46 |
| MS.gene050759 | MS.gene98394 | 0.829459 | 5.09E-55 | -1.69E-46 |
| MS.gene050807 | MS.gene98394 | 0.854877 | 9.18E-62 | -1.69E-46 |
| MS.gene050808 | MS.gene98394 | 0.809394 | 1.93E-50 | -1.69E-46 |
| MS.gene050815 | MS.gene98394 | 0.808866 | 2.51E-50 | -1.69E-46 |
| MS.gene050826 | MS.gene98394 | 0.82829 | 9.76E-55 | -1.69E-46 |
| MS.gene050962 | MS.gene98394 | 0.818531 | 1.87E-52 | -1.69E-46 |
| MS.gene051102 | MS.gene98394 | 0.811437 | 7.00E-51 | -1.69E-46 |
| MS.gene051198 | MS.gene98394 | 0.87014 | 1.83E-66 | -1.69E-46 |
| MS.gene051247 | MS.gene98394 | 0.862279 | 5.67E-64 | -1.69E-46 |
| MS.gene051279 | MS.gene98394 | 0.853805 | 1.87E-61 | -1.69E-46 |
| MS.gene051328 | MS.gene98394 | 0.830356 | 3.08E-55 | -1.69E-46 |
| MS.gene051332 | MS.gene98394 | 0.814259 | 1.69E-51 | -1.69E-46 |
| MS.gene051388 | MS.gene98394 | 0.814928 | 1.20E-51 | -1.69E-46 |
| MS.gene051577 | MS.gene98394 | 0.80272 | 4.91E-49 | -1.69E-46 |
| MS.gene05157 | MS.gene98394 | 0.803217 | 3.87E-49 | -1.69E-46 |
| MS.gene051700 | MS.gene98394 | 0.832643 | 8.41E-56 | -1.69E-46 |
| MS.gene051719 | MS.gene98394 | 0.84073 | 7.29E-58 | -1.69E-46 |
| MS.gene051720 | MS.gene98394 | 0.845326 | 4.35E-59 | -1.69E-46 |
| MS.gene051744 | MS.gene98394 | 0.829938 | 3.89E-55 | -1.69E-46 |
| MS.gene051800 | MS.gene98394 | 0.840674 | 7.54E-58 | -1.69E-46 |
| MS.gene051957 | MS.gene98394 | 0.805297 | 1.43E-49 | -1.69E-46 |
| MS.gene052037 | MS.gene98394 | 0.816717 | 4.79E-52 | -1.69E-46 |
| MS.gene052133 | MS.gene98394 | 0.806826 | 6.81E-50 | -1.69E-46 |
| MS.gene052239 | MS.gene98394 | -0.818932 | 1.51E-52 | -1.69E-46 |
| MS.gene052459 | MS.gene98394 | 0.824234 | 9.01E-54 | -1.69E-46 |
| MS.gene052463 | MS.gene98394 | 0.846469 | 2.13E-59 | -1.69E-46 |
| MS.gene052516 | MS.gene98394 | 0.868438 | 6.53E-66 | -1.69E-46 |
| MS.gene052519 | MS.gene98394 | 0.850779 | 1.36E-60 | -1.69E-46 |
| MS.gene052561 | MS.gene98394 | 0.824635 | 7.25E-54 | -1.69E-46 |
| MS.gene052582 | MS.gene98394 | 0.837612 | 4.69E-57 | -1.69E-46 |
| MS.gene052584 | MS.gene98394 | 0.823985 | 1.03E-53 | -1.69E-46 |
| MS.gene052611 | MS.gene98394 | 0.804425 | 2.17E-49 | -1.69E-46 |
| MS.gene052665 | MS.gene98394 | 0.817487 | 3.21E-52 | -1.69E-46 |
| MS.gene052773 | MS.gene98394 | 0.819103 | 1.38E-52 | -1.69E-46 |
| MS.gene052863 | MS.gene98394 | 0.838501 | 2.77E-57 | -1.69E-46 |
| MS.gene052896 | MS.gene98394 | 0.801509 | 8.71E-49 | -1.69E-46 |
| MS.gene053006 | MS.gene98394 | 0.804624 | 1.98E-49 | -1.69E-46 |
| MS.gene053008 | MS.gene98394 | 0.829108 | 6.19E-55 | -1.69E-46 |
| MS.gene053079 | MS.gene98394 | 0.844614 | 6.78E-59 | -1.69E-46 |
| MS.gene053144 | MS.gene98394 | 0.828047 | 1.12E-54 | -1.69E-46 |
| MS.gene05315 | MS.gene98394 | 0.809282 | 2.04E-50 | -1.69E-46 |
| MS.gene053164 | MS.gene98394 | 0.80216 | 6.40E-49 | -1.69E-46 |
| MS.gene053166 | MS.gene98394 | 0.806867 | 6.68E-50 | -1.69E-46 |
| MS.gene053226 | MS.gene98394 | 0.848655 | 5.34E-60 | -1.69E-46 |
| MS.gene053581 | MS.gene98394 | 0.834269 | 3.31E-56 | -1.69E-46 |
| MS.gene053621 | MS.gene98394 | 0.806442 | 8.21E-50 | -1.69E-46 |
| MS.gene05364 | MS.gene98394 | 0.831879 | 1.30E-55 | -1.69E-46 |
| MS.gene053678 | MS.gene98394 | 0.839354 | 1.67E-57 | -1.69E-46 |
| MS.gene053931 | MS.gene98394 | 0.816693 | 4.85E-52 | -1.69E-46 |
| MS.gene05414 | MS.gene98394 | 0.814455 | 1.53E-51 | -1.69E-46 |
| MS.gene05415 | MS.gene98394 | 0.822156 | 2.75E-53 | -1.69E-46 |
| MS.gene054236 | MS.gene98394 | 0.849871 | 2.45E-60 | -1.69E-46 |
| MS.gene05423 | MS.gene98394 | 0.817893 | 2.60E-52 | -1.69E-46 |
| MS.gene054472 | MS.gene98394 | 0.825224 | 5.27E-54 | -1.69E-46 |
| MS.gene054576 | MS.gene98394 | 0.800131 | 1.66E-48 | -1.69E-46 |
| MS.gene054584 | MS.gene98394 | 0.830502 | 2.83E-55 | -1.69E-46 |
| MS.gene05458 | MS.gene98394 | 0.837251 | 5.80E-57 | -1.69E-46 |
| MS.gene05462 | MS.gene98394 | 0.811725 | 6.06E-51 | -1.69E-46 |
| MS.gene054651 | MS.gene98394 | 0.862562 | 4.64E-64 | -1.69E-46 |
| MS.gene054775 | MS.gene98394 | 0.84786 | 8.85E-60 | -1.69E-46 |
| MS.gene054801 | MS.gene98394 | 0.805717 | 1.17E-49 | -1.69E-46 |
| MS.gene054991 | MS.gene98394 | 0.832243 | 1.06E-55 | -1.69E-46 |
| MS.gene055144 | MS.gene98394 | 0.823525 | 1.32E-53 | -1.69E-46 |
| MS.gene05517 | MS.gene98394 | 0.809698 | 1.66E-50 | -1.69E-46 |
| MS.gene055227 | MS.gene98394 | 0.818385 | 2.02E-52 | -1.69E-46 |
| MS.gene055228 | MS.gene98394 | 0.837861 | 4.05E-57 | -1.69E-46 |
| MS.gene055310 | MS.gene98394 | 0.804816 | 1.80E-49 | -1.69E-46 |
| MS.gene055464 | MS.gene98394 | 0.822032 | 2.94E-53 | -1.69E-46 |
| MS.gene055465 | MS.gene98394 | 0.851168 | 1.06E-60 | -1.69E-46 |
| MS.gene055466 | MS.gene98394 | 0.862945 | 3.54E-64 | -1.69E-46 |
| MS.gene055468 | MS.gene98394 | 0.860169 | 2.49E-63 | -1.69E-46 |
| MS.gene055469 | MS.gene98394 | 0.829528 | 4.89E-55 | -1.69E-46 |
| MS.gene055512 | MS.gene98394 | 0.809618 | 1.73E-50 | -1.69E-46 |
| MS.gene055513 | MS.gene98394 | 0.825343 | 4.94E-54 | -1.69E-46 |
| MS.gene055580 | MS.gene98394 | -0.829096 | 6.23E-55 | -1.69E-46 |
| MS.gene055608 | MS.gene98394 | 0.831463 | 1.65E-55 | -1.69E-46 |
| MS.gene055623 | MS.gene98394 | 0.814481 | 1.51E-51 | -1.69E-46 |
| MS.gene055724 | MS.gene98394 | 0.806129 | 9.55E-50 | -1.69E-46 |
| MS.gene055778 | MS.gene98394 | 0.806723 | 7.16E-50 | -1.69E-46 |
| MS.gene055818 | MS.gene98394 | 0.831388 | 1.72E-55 | -1.69E-46 |
| MS.gene055841 | MS.gene98394 | 0.825012 | 5.91E-54 | -1.69E-46 |
| MS.gene055926 | MS.gene98394 | 0.848794 | 4.88E-60 | -1.69E-46 |
| MS.gene056043 | MS.gene98394 | -0.819375 | 1.20E-52 | -1.69E-46 |
| MS.gene05604 | MS.gene98394 | 0.816235 | 6.14E-52 | -1.69E-46 |
| MS.gene056050 | MS.gene98394 | 0.80541 | 1.35E-49 | -1.69E-46 |
| MS.gene056162 | MS.gene98394 | 0.807655 | 4.55E-50 | -1.69E-46 |
| MS.gene056174 | MS.gene98394 | 0.838504 | 2.76E-57 | -1.69E-46 |
| MS.gene056215 | MS.gene98394 | 0.833021 | 6.77E-56 | -1.69E-46 |
| MS.gene056252 | MS.gene98394 | 0.828391 | 9.23E-55 | -1.69E-46 |
| MS.gene056308 | MS.gene98394 | 0.840842 | 6.82E-58 | -1.69E-46 |
| MS.gene056366 | MS.gene98394 | 0.823197 | 1.58E-53 | -1.69E-46 |
| MS.gene056553 | MS.gene98394 | 0.813812 | 2.12E-51 | -1.69E-46 |
| MS.gene056595 | MS.gene98394 | 0.852473 | 4.51E-61 | -1.69E-46 |
| MS.gene056699 | MS.gene98394 | 0.803867 | 2.84E-49 | -1.69E-46 |
| MS.gene056776 | MS.gene98394 | 0.803308 | 3.71E-49 | -1.69E-46 |
| MS.gene05686 | MS.gene98394 | 0.832379 | 9.77E-56 | -1.69E-46 |
| MS.gene05690 | MS.gene98394 | 0.841134 | 5.71E-58 | -1.69E-46 |
| MS.gene057034 | MS.gene98394 | 0.811304 | 7.49E-51 | -1.69E-46 |
| MS.gene057060 | MS.gene98394 | 0.817464 | 3.25E-52 | -1.69E-46 |
| MS.gene057208 | MS.gene98394 | 0.838493 | 2.78E-57 | -1.69E-46 |
| MS.gene057287 | MS.gene98394 | 0.812037 | 5.19E-51 | -1.69E-46 |
| MS.gene057314 | MS.gene98394 | 0.814668 | 1.37E-51 | -1.69E-46 |
| MS.gene057371 | MS.gene98394 | 0.801591 | 8.38E-49 | -1.69E-46 |
| MS.gene057444 | MS.gene98394 | 0.84678 | 1.75E-59 | -1.69E-46 |
| MS.gene057446 | MS.gene98394 | 0.812519 | 4.07E-51 | -1.69E-46 |
| MS.gene057693 | MS.gene98394 | 0.821738 | 3.44E-53 | -1.69E-46 |
| MS.gene057694 | MS.gene98394 | 0.808518 | 2.98E-50 | -1.69E-46 |
| MS.gene057705 | MS.gene98394 | 0.805908 | 1.06E-49 | -1.69E-46 |
| MS.gene057869 | MS.gene98394 | 0.815799 | 7.68E-52 | -1.69E-46 |
| MS.gene057915 | MS.gene98394 | 0.818924 | 1.52E-52 | -1.69E-46 |
| MS.gene058008 | MS.gene98394 | 0.803155 | 3.99E-49 | -1.69E-46 |
| MS.gene058009 | MS.gene98394 | 0.833163 | 6.24E-56 | -1.69E-46 |
| MS.gene058010 | MS.gene98394 | 0.876608 | 1.22E-68 | -1.69E-46 |
| MS.gene058037 | MS.gene98394 | 0.806773 | 6.99E-50 | -1.69E-46 |
| MS.gene058054 | MS.gene98394 | 0.811646 | 6.31E-51 | -1.69E-46 |
| MS.gene058330 | MS.gene98394 | 0.809152 | 2.18E-50 | -1.69E-46 |
| MS.gene058339 | MS.gene98394 | 0.848237 | 6.96E-60 | -1.69E-46 |
| MS.gene058360 | MS.gene98394 | 0.8349 | 2.29E-56 | -1.69E-46 |
| MS.gene05847 | MS.gene98394 | 0.833493 | 5.17E-56 | -1.69E-46 |
| MS.gene058548 | MS.gene98394 | 0.814091 | 1.84E-51 | -1.69E-46 |
| MS.gene058625 | MS.gene98394 | 0.841756 | 3.92E-58 | -1.69E-46 |
| MS.gene058781 | MS.gene98394 | 0.814533 | 1.47E-51 | -1.69E-46 |
| MS.gene058783 | MS.gene98394 | 0.844433 | 7.58E-59 | -1.69E-46 |
| MS.gene058852 | MS.gene98394 | 0.803061 | 4.17E-49 | -1.69E-46 |
| MS.gene058979 | MS.gene98394 | 0.829451 | 5.11E-55 | -1.69E-46 |
| MS.gene05897 | MS.gene98394 | 0.803057 | 4.18E-49 | -1.69E-46 |
| MS.gene059015 | MS.gene98394 | 0.806175 | 9.35E-50 | -1.69E-46 |
| MS.gene059170 | MS.gene98394 | 0.821454 | 4.00E-53 | -1.69E-46 |
| MS.gene059272 | MS.gene98394 | 0.822328 | 2.51E-53 | -1.69E-46 |
| MS.gene059283 | MS.gene98394 | 0.811714 | 6.10E-51 | -1.69E-46 |
| MS.gene059439 | MS.gene98394 | 0.808135 | 3.59E-50 | -1.69E-46 |
| MS.gene05954 | MS.gene98394 | 0.805464 | 1.32E-49 | -1.69E-46 |
| MS.gene059570 | MS.gene98394 | 0.814234 | 1.71E-51 | -1.69E-46 |
| MS.gene059584 | MS.gene98394 | 0.817156 | 3.82E-52 | -1.69E-46 |
| MS.gene059625 | MS.gene98394 | 0.842622 | 2.31E-58 | -1.69E-46 |
| MS.gene059842 | MS.gene98394 | 0.859583 | 3.74E-63 | -1.69E-46 |
| MS.gene059937 | MS.gene98394 | 0.81551 | 8.91E-52 | -1.69E-46 |
| MS.gene060011 | MS.gene98394 | 0.819494 | 1.13E-52 | -1.69E-46 |
| MS.gene060167 | MS.gene98394 | 0.827443 | 1.56E-54 | -1.69E-46 |
| MS.gene060310 | MS.gene98394 | 0.855793 | 4.97E-62 | -1.69E-46 |
| MS.gene060322 | MS.gene98394 | 0.836636 | 8.33E-57 | -1.69E-46 |
| MS.gene060365 | MS.gene98394 | 0.808917 | 2.45E-50 | -1.69E-46 |
| MS.gene060429 | MS.gene98394 | 0.846901 | 1.62E-59 | -1.69E-46 |
| MS.gene060521 | MS.gene98394 | 0.808107 | 3.64E-50 | -1.69E-46 |
| MS.gene06052 | MS.gene98394 | 0.835121 | 2.02E-56 | -1.69E-46 |
| MS.gene060587 | MS.gene98394 | 0.825337 | 4.95E-54 | -1.69E-46 |
| MS.gene060603 | MS.gene98394 | 0.805337 | 1.40E-49 | -1.69E-46 |
| MS.gene060637 | MS.gene98394 | 0.80133 | 9.47E-49 | -1.69E-46 |
| MS.gene060802 | MS.gene98394 | 0.803548 | 3.31E-49 | -1.69E-46 |
| MS.gene060803 | MS.gene98394 | 0.811375 | 7.23E-51 | -1.69E-46 |
| MS.gene060932 | MS.gene98394 | 0.811319 | 7.43E-51 | -1.69E-46 |
| MS.gene060935 | MS.gene98394 | 0.808982 | 2.37E-50 | -1.69E-46 |
| MS.gene060998 | MS.gene98394 | 0.80568 | 1.19E-49 | -1.69E-46 |
| MS.gene061100 | MS.gene98394 | 0.823287 | 1.50E-53 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene98394.t1 | MTR_2g046150 | 98.780 | 164 | 2 | 0 | 1 | 164 | 1 | 164 | 5.01e-118 | 330 |
| MS.gene98394.t1 | MTR_7g111900 | 46.479 | 142 | 75 | 1 | 6 | 146 | 2 | 143 | 5.66e-38 | 128 |
| MS.gene98394.t1 | MTR_1g084200 | 43.137 | 153 | 86 | 1 | 6 | 157 | 2 | 154 | 1.49e-36 | 124 |
| MS.gene98394.t1 | MTR_7g103200 | 43.382 | 136 | 76 | 1 | 6 | 140 | 2 | 137 | 2.05e-36 | 123 |
| MS.gene98394.t1 | MTR_2g019480 | 38.129 | 139 | 86 | 0 | 15 | 153 | 16 | 154 | 4.71e-32 | 112 |
| MS.gene98394.t1 | MTR_2g091215 | 40.909 | 132 | 78 | 0 | 11 | 142 | 3 | 134 | 9.45e-28 | 100 |
| MS.gene98394.t1 | MTR_2g091210 | 38.462 | 130 | 80 | 0 | 11 | 140 | 3 | 132 | 7.39e-27 | 98.6 |
| MS.gene98394.t1 | MTR_4g122930 | 36.986 | 146 | 85 | 4 | 7 | 147 | 3 | 146 | 5.99e-24 | 91.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene98394.t1 | AT4G24130 | 68.667 | 150 | 46 | 1 | 1 | 149 | 1 | 150 | 5.38e-72 | 214 |
| MS.gene98394.t1 | AT1G09310 | 46.207 | 145 | 76 | 2 | 7 | 150 | 3 | 146 | 1.29e-34 | 119 |
| MS.gene98394.t1 | AT1G56580 | 44.595 | 148 | 79 | 3 | 7 | 151 | 3 | 150 | 3.13e-34 | 118 |
| MS.gene98394.t1 | AT5G46230 | 37.121 | 132 | 83 | 0 | 9 | 140 | 8 | 139 | 1.61e-31 | 110 |
| MS.gene98394.t1 | AT1G30020 | 33.846 | 130 | 82 | 1 | 7 | 136 | 6 | 131 | 1.02e-25 | 96.3 |
| MS.gene98394.t1 | AT5G49600 | 34.694 | 147 | 85 | 4 | 7 | 143 | 1 | 146 | 1.38e-20 | 83.6 |
Find 29 sgRNAs with CRISPR-Local
Find 35 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAAAGGTGTTCTTCCCTTAA+AGG | 0.146605 | 2.4:+44870095 | MS.gene98394:CDS |
| ACATTCAACAAGATCCTTTA+AGG | 0.179628 | 2.4:-44870109 | None:intergenic |
| AGAGTAAGCAATTGTTTGTT+TGG | 0.287883 | 2.4:+44870280 | MS.gene98394:CDS |
| TGTGGAAGAGTTAGAGAAAC+TGG | 0.316514 | 2.4:+44870129 | MS.gene98394:CDS |
| TCAATACTCATTTCAACTAT+AGG | 0.386964 | 2.4:-44870306 | None:intergenic |
| CTTTAAGGGAAGAACACCTT+TGG | 0.399056 | 2.4:-44870094 | None:intergenic |
| GAGTAAGCAATTGTTTGTTT+GGG | 0.413681 | 2.4:+44870281 | MS.gene98394:CDS |
| GAAGTTGCAATTGAAGGATA+AGG | 0.421440 | 2.4:+44870431 | MS.gene98394:CDS |
| CATTCAACAAGATCCTTTAA+GGG | 0.423103 | 2.4:-44870108 | None:intergenic |
| TTTAAGGGAAGAACACCTTT+GGG | 0.434347 | 2.4:-44870093 | None:intergenic |
| ATACAACTCTTAGAAGAGCT+TGG | 0.448905 | 2.4:+44870066 | MS.gene98394:CDS |
| TTTAAGACTCCTATGGGGAT+TGG | 0.453850 | 2.4:+44870354 | MS.gene98394:CDS |
| GTATGAGAAGTTGCAATTGA+AGG | 0.453990 | 2.4:+44870425 | MS.gene98394:CDS |
| AATTGAAGTTACTGCTTATG+TGG | 0.459578 | 2.4:+44870224 | MS.gene98394:CDS |
| ATAGTTGAAATGAGTATTGA+GGG | 0.460794 | 2.4:+44870309 | MS.gene98394:CDS |
| AAGCTCTTCTAAGAGTTGTA+TGG | 0.469293 | 2.4:-44870064 | None:intergenic |
| CCTTCAAAATAATGTTCACT+TGG | 0.482969 | 2.4:-44870177 | None:intergenic |
| TATAGTTGAAATGAGTATTG+AGG | 0.501110 | 2.4:+44870308 | MS.gene98394:CDS |
| TTAAAGGATCTTGTTGAATG+TGG | 0.521582 | 2.4:+44870111 | MS.gene98394:CDS |
| CTTCTAAGAGTTGTATGGAA+TGG | 0.521965 | 2.4:-44870059 | None:intergenic |
| GTTGCAATTGAAGGATAAGG+AGG | 0.546376 | 2.4:+44870434 | MS.gene98394:CDS |
| GCAGGTGCAGAAATAGTGTA+TGG | 0.551940 | 2.4:+44870018 | MS.gene98394:CDS |
| TACTTCATTTATGAGTGTTG+AGG | 0.556318 | 2.4:+44870392 | MS.gene98394:CDS |
| TTCAAGATGAAGAAAATGAG+TGG | 0.567086 | 2.4:+44870252 | MS.gene98394:CDS |
| ACAAAGACTCTTGTGAGCTA+CGG | 0.601286 | 2.4:+44870201 | MS.gene98394:CDS |
| GAAGAGCTTGGATTTCCCAA+AGG | 0.601476 | 2.4:+44870078 | MS.gene98394:CDS |
| ATGGTAACAAATGAACGTGC+AGG | 0.612544 | 2.4:+44870000 | MS.gene98394:CDS |
| AAAGACTTACCAATCCCCAT+AGG | 0.653062 | 2.4:-44870363 | None:intergenic |
| AATGGCTAGCAACAGCACAA+TGG | 0.699467 | 2.4:+44869981 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| ! | TCAATACTCATTTCAACTAT+AGG | - | chr2.4:44870309-44870328 | None:intergenic | 25.0% |
| !! | TATAGTTGAAATGAGTATTG+AGG | + | chr2.4:44870308-44870327 | MS.gene98394:CDS | 25.0% |
| !!! | ATAGTTGAAATGAGTATTGA+GGG | + | chr2.4:44870309-44870328 | MS.gene98394:CDS | 25.0% |
| !!! | ATGTATTTTAAGACTCCTAT+GGG | + | chr2.4:44870348-44870367 | MS.gene98394:CDS | 25.0% |
| !!! | TTTTGTTTGGATGAAACAAA+AGG | + | chr2.4:44870152-44870171 | MS.gene98394:CDS | 25.0% |
| AATTGAAGTTACTGCTTATG+TGG | + | chr2.4:44870224-44870243 | MS.gene98394:CDS | 30.0% | |
| ACATTCAACAAGATCCTTTA+AGG | - | chr2.4:44870112-44870131 | None:intergenic | 30.0% | |
| AGAGTAAGCAATTGTTTGTT+TGG | + | chr2.4:44870280-44870299 | MS.gene98394:CDS | 30.0% | |
| CATTCAACAAGATCCTTTAA+GGG | - | chr2.4:44870111-44870130 | None:intergenic | 30.0% | |
| CCTTCAAAATAATGTTCACT+TGG | - | chr2.4:44870180-44870199 | None:intergenic | 30.0% | |
| GAGTAAGCAATTGTTTGTTT+GGG | + | chr2.4:44870281-44870300 | MS.gene98394:CDS | 30.0% | |
| TTAAAGGATCTTGTTGAATG+TGG | + | chr2.4:44870111-44870130 | MS.gene98394:CDS | 30.0% | |
| TTCAAGATGAAGAAAATGAG+TGG | + | chr2.4:44870252-44870271 | MS.gene98394:CDS | 30.0% | |
| ! | TACTTCATTTATGAGTGTTG+AGG | + | chr2.4:44870392-44870411 | MS.gene98394:CDS | 30.0% |
| !!! | ATGAGTATTGAGGGTTTTAA+TGG | + | chr2.4:44870318-44870337 | MS.gene98394:CDS | 30.0% |
| !!! | CCAAGTGAACATTATTTTGA+AGG | + | chr2.4:44870177-44870196 | MS.gene98394:CDS | 30.0% |
| !!! | GATGTATTTTAAGACTCCTA+TGG | + | chr2.4:44870347-44870366 | MS.gene98394:CDS | 30.0% |
| !!! | TGTATTTTAAGACTCCTATG+GGG | + | chr2.4:44870349-44870368 | MS.gene98394:CDS | 30.0% |
| !!! | TTAGAGAAACTGGTTTTGTT+TGG | + | chr2.4:44870139-44870158 | MS.gene98394:CDS | 30.0% |
| ATACAACTCTTAGAAGAGCT+TGG | + | chr2.4:44870066-44870085 | MS.gene98394:CDS | 35.0% | |
| GAAGTTGCAATTGAAGGATA+AGG | + | chr2.4:44870431-44870450 | MS.gene98394:CDS | 35.0% | |
| GTATGAGAAGTTGCAATTGA+AGG | + | chr2.4:44870425-44870444 | MS.gene98394:CDS | 35.0% | |
| TTTAAGGGAAGAACACCTTT+GGG | - | chr2.4:44870096-44870115 | None:intergenic | 35.0% | |
| ! | AAGCTCTTCTAAGAGTTGTA+TGG | - | chr2.4:44870067-44870086 | None:intergenic | 35.0% |
| ! | CTTCTAAGAGTTGTATGGAA+TGG | - | chr2.4:44870062-44870081 | None:intergenic | 35.0% |
| AAAGACTTACCAATCCCCAT+AGG | - | chr2.4:44870366-44870385 | None:intergenic | 40.0% | |
| ACAAAGACTCTTGTGAGCTA+CGG | + | chr2.4:44870201-44870220 | MS.gene98394:CDS | 40.0% | |
| ATGGTAACAAATGAACGTGC+AGG | + | chr2.4:44870000-44870019 | MS.gene98394:CDS | 40.0% | |
| GTTGCAATTGAAGGATAAGG+AGG | + | chr2.4:44870434-44870453 | MS.gene98394:CDS | 40.0% | |
| TGTGGAAGAGTTAGAGAAAC+TGG | + | chr2.4:44870129-44870148 | MS.gene98394:CDS | 40.0% | |
| ! | CTTTAAGGGAAGAACACCTT+TGG | - | chr2.4:44870097-44870116 | None:intergenic | 40.0% |
| ! | TTTAAGACTCCTATGGGGAT+TGG | + | chr2.4:44870354-44870373 | MS.gene98394:CDS | 40.0% |
| !! | CAAAGGTGTTCTTCCCTTAA+AGG | + | chr2.4:44870095-44870114 | MS.gene98394:CDS | 40.0% |
| GAAGAGCTTGGATTTCCCAA+AGG | + | chr2.4:44870078-44870097 | MS.gene98394:CDS | 45.0% | |
| GCAGGTGCAGAAATAGTGTA+TGG | + | chr2.4:44870018-44870037 | MS.gene98394:CDS | 45.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2.4 | gene | 44869982 | 44870476 | 44869982 | ID=MS.gene98394 |
| chr2.4 | mRNA | 44869982 | 44870476 | 44869982 | ID=MS.gene98394.t1;Parent=MS.gene98394 |
| chr2.4 | exon | 44869982 | 44870476 | 44869982 | ID=MS.gene98394.t1.exon1;Parent=MS.gene98394.t1 |
| chr2.4 | CDS | 44869982 | 44870476 | 44869982 | ID=cds.MS.gene98394.t1;Parent=MS.gene98394.t1 |
| Gene Sequence |
| Protein sequence |
