Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene60163.t1 | XP_003608579.1 | 98.9 | 91 | 1 | 0 | 1 | 91 | 1 | 91 | 2.90E-41 | 180.3 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene60163.t1 | G7JFA7 | 98.9 | 91 | 1 | 0 | 1 | 91 | 1 | 91 | 2.1e-41 | 180.3 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene049142 | MS.gene60163 | 0.892362 | 1.70E-74 | -1.69E-46 |
MS.gene049159 | MS.gene60163 | 0.822072 | 2.88E-53 | -1.69E-46 |
MS.gene049178 | MS.gene60163 | 0.802818 | 4.68E-49 | -1.69E-46 |
MS.gene049227 | MS.gene60163 | 0.81167 | 6.23E-51 | -1.69E-46 |
MS.gene049254 | MS.gene60163 | 0.807384 | 5.19E-50 | -1.69E-46 |
MS.gene049350 | MS.gene60163 | 0.824475 | 7.91E-54 | -1.69E-46 |
MS.gene049368 | MS.gene60163 | 0.817129 | 3.87E-52 | -1.69E-46 |
MS.gene049501 | MS.gene60163 | 0.816943 | 4.26E-52 | -1.69E-46 |
MS.gene049711 | MS.gene60163 | 0.807725 | 4.39E-50 | -1.69E-46 |
MS.gene049786 | MS.gene60163 | 0.823993 | 1.03E-53 | -1.69E-46 |
MS.gene049807 | MS.gene60163 | 0.830533 | 2.78E-55 | -1.69E-46 |
MS.gene049887 | MS.gene60163 | 0.848205 | 7.11E-60 | -1.69E-46 |
MS.gene049983 | MS.gene60163 | 0.815295 | 9.95E-52 | -1.69E-46 |
MS.gene050213 | MS.gene60163 | 0.816155 | 6.40E-52 | -1.69E-46 |
MS.gene050224 | MS.gene60163 | 0.830082 | 3.59E-55 | -1.69E-46 |
MS.gene050439 | MS.gene60163 | 0.801028 | 1.09E-48 | -1.69E-46 |
MS.gene050551 | MS.gene60163 | 0.830941 | 2.21E-55 | -1.69E-46 |
MS.gene050556 | MS.gene60163 | 0.826998 | 1.99E-54 | -1.69E-46 |
MS.gene050654 | MS.gene60163 | 0.834169 | 3.50E-56 | -1.69E-46 |
MS.gene050657 | MS.gene60163 | 0.837744 | 4.34E-57 | -1.69E-46 |
MS.gene050737 | MS.gene60163 | 0.833342 | 5.63E-56 | -1.69E-46 |
MS.gene050826 | MS.gene60163 | 0.821093 | 4.85E-53 | -1.69E-46 |
MS.gene050838 | MS.gene60163 | 0.812692 | 3.73E-51 | -1.69E-46 |
MS.gene050941 | MS.gene60163 | 0.84048 | 8.48E-58 | -1.69E-46 |
MS.gene051003 | MS.gene60163 | 0.809751 | 1.62E-50 | -1.69E-46 |
MS.gene051102 | MS.gene60163 | 0.834718 | 2.55E-56 | -1.69E-46 |
MS.gene051198 | MS.gene60163 | 0.817229 | 3.68E-52 | -1.69E-46 |
MS.gene051234 | MS.gene60163 | 0.801802 | 7.58E-49 | -1.69E-46 |
MS.gene051247 | MS.gene60163 | 0.806136 | 9.52E-50 | -1.69E-46 |
MS.gene051381 | MS.gene60163 | 0.802832 | 4.65E-49 | -1.69E-46 |
MS.gene051388 | MS.gene60163 | 0.82888 | 7.03E-55 | -1.69E-46 |
MS.gene051490 | MS.gene60163 | 0.812735 | 3.65E-51 | -1.69E-46 |
MS.gene05150 | MS.gene60163 | 0.805434 | 1.34E-49 | -1.69E-46 |
MS.gene051719 | MS.gene60163 | 0.801644 | 8.17E-49 | -1.69E-46 |
MS.gene051720 | MS.gene60163 | 0.810911 | 9.11E-51 | -1.69E-46 |
MS.gene051744 | MS.gene60163 | 0.821696 | 3.52E-53 | -1.69E-46 |
MS.gene051800 | MS.gene60163 | 0.814449 | 1.53E-51 | -1.69E-46 |
MS.gene051852 | MS.gene60163 | 0.822294 | 2.56E-53 | -1.69E-46 |
MS.gene052016 | MS.gene60163 | 0.805241 | 1.47E-49 | -1.69E-46 |
MS.gene052037 | MS.gene60163 | 0.805648 | 1.21E-49 | -1.69E-46 |
MS.gene052307 | MS.gene60163 | 0.872258 | 3.65E-67 | -1.69E-46 |
MS.gene052311 | MS.gene60163 | 0.8237 | 1.20E-53 | -1.69E-46 |
MS.gene052335 | MS.gene60163 | 0.802671 | 5.02E-49 | -1.69E-46 |
MS.gene052342 | MS.gene60163 | 0.80651 | 7.94E-50 | -1.69E-46 |
MS.gene052397 | MS.gene60163 | 0.803255 | 3.80E-49 | -1.69E-46 |
MS.gene052459 | MS.gene60163 | 0.807213 | 5.64E-50 | -1.69E-46 |
MS.gene052463 | MS.gene60163 | 0.842057 | 3.26E-58 | -1.69E-46 |
MS.gene052516 | MS.gene60163 | 0.856214 | 3.74E-62 | -1.69E-46 |
MS.gene052609 | MS.gene60163 | 0.874014 | 9.40E-68 | -1.69E-46 |
MS.gene052665 | MS.gene60163 | 0.805172 | 1.52E-49 | -1.69E-46 |
MS.gene052773 | MS.gene60163 | 0.804701 | 1.90E-49 | -1.69E-46 |
MS.gene052776 | MS.gene60163 | 0.809568 | 1.77E-50 | -1.69E-46 |
MS.gene052863 | MS.gene60163 | 0.814996 | 1.16E-51 | -1.69E-46 |
MS.gene052896 | MS.gene60163 | 0.822166 | 2.74E-53 | -1.69E-46 |
MS.gene053079 | MS.gene60163 | 0.858263 | 9.29E-63 | -1.69E-46 |
MS.gene053143 | MS.gene60163 | 0.848387 | 6.33E-60 | -1.69E-46 |
MS.gene053144 | MS.gene60163 | 0.871396 | 7.06E-67 | -1.69E-46 |
MS.gene05315 | MS.gene60163 | 0.809035 | 2.31E-50 | -1.69E-46 |
MS.gene053164 | MS.gene60163 | 0.821739 | 3.44E-53 | -1.69E-46 |
MS.gene053226 | MS.gene60163 | 0.814309 | 1.64E-51 | -1.69E-46 |
MS.gene053581 | MS.gene60163 | 0.813509 | 2.47E-51 | -1.69E-46 |
MS.gene054480 | MS.gene60163 | 0.803322 | 3.68E-49 | -1.69E-46 |
MS.gene054576 | MS.gene60163 | 0.811061 | 8.45E-51 | -1.69E-46 |
MS.gene054584 | MS.gene60163 | 0.858636 | 7.19E-63 | -1.69E-46 |
MS.gene05458 | MS.gene60163 | 0.819728 | 9.97E-53 | -1.69E-46 |
MS.gene054651 | MS.gene60163 | 0.80174 | 7.81E-49 | -1.69E-46 |
MS.gene054824 | MS.gene60163 | 0.844743 | 6.26E-59 | -1.69E-46 |
MS.gene054943 | MS.gene60163 | 0.828483 | 8.77E-55 | -1.69E-46 |
MS.gene055310 | MS.gene60163 | 0.83234 | 1.00E-55 | -1.69E-46 |
MS.gene055311 | MS.gene60163 | 0.812182 | 4.82E-51 | -1.69E-46 |
MS.gene055313 | MS.gene60163 | 0.837841 | 4.10E-57 | -1.69E-46 |
MS.gene055465 | MS.gene60163 | 0.831487 | 1.62E-55 | -1.69E-46 |
MS.gene055466 | MS.gene60163 | 0.820729 | 5.88E-53 | -1.69E-46 |
MS.gene055468 | MS.gene60163 | 0.827189 | 1.79E-54 | -1.69E-46 |
MS.gene055469 | MS.gene60163 | 0.857422 | 1.65E-62 | -1.69E-46 |
MS.gene055513 | MS.gene60163 | 0.890877 | 6.62E-74 | -1.69E-46 |
MS.gene055537 | MS.gene60163 | 0.800353 | 1.50E-48 | -1.69E-46 |
MS.gene055580 | MS.gene60163 | -0.808625 | 2.82E-50 | -1.69E-46 |
MS.gene055864 | MS.gene60163 | 0.810166 | 1.32E-50 | -1.69E-46 |
MS.gene055926 | MS.gene60163 | 0.833921 | 4.04E-56 | -1.69E-46 |
MS.gene056043 | MS.gene60163 | -0.809957 | 1.46E-50 | -1.69E-46 |
MS.gene056045 | MS.gene60163 | 0.806287 | 8.85E-50 | -1.69E-46 |
MS.gene056050 | MS.gene60163 | 0.802537 | 5.35E-49 | -1.69E-46 |
MS.gene056174 | MS.gene60163 | 0.800185 | 1.62E-48 | -1.69E-46 |
MS.gene056181 | MS.gene60163 | 0.850495 | 1.64E-60 | -1.69E-46 |
MS.gene056308 | MS.gene60163 | 0.870954 | 9.87E-67 | -1.69E-46 |
MS.gene056390 | MS.gene60163 | 0.813446 | 2.55E-51 | -1.69E-46 |
MS.gene056507 | MS.gene60163 | 0.843235 | 1.59E-58 | -1.69E-46 |
MS.gene056538 | MS.gene60163 | 0.80219 | 6.31E-49 | -1.69E-46 |
MS.gene056595 | MS.gene60163 | 0.814057 | 1.87E-51 | -1.69E-46 |
MS.gene056699 | MS.gene60163 | 0.826803 | 2.22E-54 | -1.69E-46 |
MS.gene056831 | MS.gene60163 | 0.841593 | 4.33E-58 | -1.69E-46 |
MS.gene057034 | MS.gene60163 | 0.831423 | 1.68E-55 | -1.69E-46 |
MS.gene057294 | MS.gene60163 | 0.806598 | 7.61E-50 | -1.69E-46 |
MS.gene057360 | MS.gene60163 | 0.81001 | 1.43E-50 | -1.69E-46 |
MS.gene057915 | MS.gene60163 | 0.82982 | 4.16E-55 | -1.69E-46 |
MS.gene058010 | MS.gene60163 | 0.837245 | 5.82E-57 | -1.69E-46 |
MS.gene058292 | MS.gene60163 | 0.810861 | 9.34E-51 | -1.69E-46 |
MS.gene058330 | MS.gene60163 | 0.816441 | 5.52E-52 | -1.69E-46 |
MS.gene058339 | MS.gene60163 | 0.818064 | 2.38E-52 | -1.69E-46 |
MS.gene058360 | MS.gene60163 | 0.802441 | 5.60E-49 | -1.69E-46 |
MS.gene058625 | MS.gene60163 | 0.800241 | 1.58E-48 | -1.69E-46 |
MS.gene058638 | MS.gene60163 | 0.829835 | 4.12E-55 | -1.69E-46 |
MS.gene058639 | MS.gene60163 | 0.83796 | 3.82E-57 | -1.69E-46 |
MS.gene058647 | MS.gene60163 | 0.817978 | 2.49E-52 | -1.69E-46 |
MS.gene058649 | MS.gene60163 | 0.847453 | 1.15E-59 | -1.69E-46 |
MS.gene058668 | MS.gene60163 | 0.805612 | 1.23E-49 | -1.69E-46 |
MS.gene058758 | MS.gene60163 | 0.81565 | 8.29E-52 | -1.69E-46 |
MS.gene058852 | MS.gene60163 | 0.828193 | 1.03E-54 | -1.69E-46 |
MS.gene059170 | MS.gene60163 | 0.836678 | 8.13E-57 | -1.69E-46 |
MS.gene059171 | MS.gene60163 | 0.812836 | 3.47E-51 | -1.69E-46 |
MS.gene059283 | MS.gene60163 | 0.821697 | 3.52E-53 | -1.69E-46 |
MS.gene059439 | MS.gene60163 | 0.83946 | 1.56E-57 | -1.69E-46 |
MS.gene059570 | MS.gene60163 | 0.872718 | 2.56E-67 | -1.69E-46 |
MS.gene059713 | MS.gene60163 | 0.813568 | 2.40E-51 | -1.69E-46 |
MS.gene059725 | MS.gene60163 | 0.828278 | 9.82E-55 | -1.69E-46 |
MS.gene059842 | MS.gene60163 | 0.820949 | 5.23E-53 | -1.69E-46 |
MS.gene059965 | MS.gene60163 | 0.819347 | 1.22E-52 | -1.69E-46 |
MS.gene060296 | MS.gene60163 | 0.823754 | 1.17E-53 | -1.69E-46 |
MS.gene060380 | MS.gene60163 | 0.823377 | 1.43E-53 | -1.69E-46 |
MS.gene06052 | MS.gene60163 | 0.837596 | 4.74E-57 | -1.69E-46 |
MS.gene060637 | MS.gene60163 | 0.855162 | 7.59E-62 | -1.69E-46 |
MS.gene060777 | MS.gene60163 | 0.829264 | 5.67E-55 | -1.69E-46 |
MS.gene060870 | MS.gene60163 | 0.812979 | 3.23E-51 | -1.69E-46 |
MS.gene060932 | MS.gene60163 | 0.856434 | 3.23E-62 | -1.69E-46 |
MS.gene060937 | MS.gene60163 | 0.800022 | 1.75E-48 | -1.69E-46 |
MS.gene061006 | MS.gene60163 | 0.852157 | 5.55E-61 | -1.69E-46 |
MS.gene061100 | MS.gene60163 | 0.868584 | 5.86E-66 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene60163.t1 | MTR_4g097790 | 88.685 | 654 | 49 | 4 | 1 | 629 | 1 | 654 | 0.0 | 917 |
MS.gene60163.t1 | MTR_5g005430 | 44.156 | 77 | 31 | 3 | 1 | 68 | 1 | 74 | 2.41e-14 | 76.6 |
MS.gene60163.t1 | MTR_1g105890 | 35.025 | 197 | 97 | 8 | 1 | 185 | 1 | 178 | 6.55e-14 | 75.1 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene60163.t1 | AT4G33740 | 51.429 | 70 | 25 | 2 | 8 | 68 | 7 | 76 | 2.83e-17 | 85.5 |
MS.gene60163.t1 | AT4G33740 | 51.429 | 70 | 25 | 2 | 8 | 68 | 7 | 76 | 2.83e-17 | 85.5 |
MS.gene60163.t1 | AT4G33740 | 51.429 | 70 | 25 | 2 | 8 | 68 | 7 | 76 | 2.83e-17 | 85.5 |
MS.gene60163.t1 | AT4G33740 | 51.429 | 70 | 25 | 2 | 8 | 68 | 7 | 76 | 2.83e-17 | 85.5 |
MS.gene60163.t1 | AT4G33740 | 51.429 | 70 | 25 | 2 | 8 | 68 | 7 | 76 | 2.83e-17 | 85.5 |
Find 110 sgRNAs with CRISPR-Local
Find 120 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TTTCCTCCACATGAGGTTTA+AGG | 0.231421 | 8.2:+24305538 | None:intergenic |
GTTTGGTTAGTTTATCAAAT+TGG | 0.237146 | 8.2:-24305639 | MS.gene60163:CDS |
GCATGACGAGCAAACAAAAT+TGG | 0.258368 | 8.2:-24305454 | MS.gene60163:CDS |
GAGGAGAATTAGGCATGTTT+AGG | 0.292908 | 8.2:-24305746 | None:intergenic |
GGCAATGAAGTTGTTAAGTT+AGG | 0.297885 | 8.2:-24305570 | MS.gene60163:CDS |
CTCTCCTCCTTCTGTTCCAT+TGG | 0.306465 | 8.2:+24304735 | None:intergenic |
AGAAGAACAATTTGACAAAA+AGG | 0.307480 | 8.2:-24304557 | MS.gene60163:CDS |
GATTTAGAATCTTCATTGTT+TGG | 0.315496 | 8.2:+24304223 | None:intergenic |
AGAGAATGAGGAAATCAAAA+AGG | 0.319492 | 8.2:-24305259 | MS.gene60163:CDS |
CCTTCGCATCACTACCATTC+TGG | 0.322961 | 8.2:+24304809 | None:intergenic |
CTCTACACTTTCCCTCTCCT+TGG | 0.335719 | 8.2:+24305284 | None:intergenic |
ACAAAATTGGATGATGTTAA+TGG | 0.336252 | 8.2:-24305441 | MS.gene60163:CDS |
CCATTCTGCGATGATGTATT+CGG | 0.342453 | 8.2:+24304328 | None:intergenic |
CTTAGATCTTTGACTCCTCC+TGG | 0.358867 | 8.2:+24305716 | None:intergenic |
AGAAGGGCATGATAAGATTC+AGG | 0.361284 | 8.2:-24304710 | MS.gene60163:CDS |
GAAAACCCGGAAAAGAATTC+TGG | 0.364276 | 8.2:-24304100 | MS.gene60163:CDS |
CCCGAGTTTGCATTGTCATT+CGG | 0.373470 | 8.2:+24303923 | None:intergenic |
AATGAAGAGAACAAAGAAAC+TGG | 0.374256 | 8.2:-24305183 | MS.gene60163:CDS |
GAAGTAGAGGACACAGAAAC+TGG | 0.375669 | 8.2:-24305237 | MS.gene60163:CDS |
TTCTTGTTGGTGTTTGTGTT+TGG | 0.390640 | 8.2:-24305656 | MS.gene60163:CDS |
CTTGTTTACTATCTTGCTCA+TGG | 0.391649 | 8.2:+24304770 | None:intergenic |
TTCATCTGATAATCAGGTTC+AGG | 0.393266 | 8.2:-24304680 | MS.gene60163:CDS |
CCTTCTCACTCTCACTTCCT+TGG | 0.393945 | 8.2:+24304458 | None:intergenic |
CTACAAATATGTGTTCTTGT+TGG | 0.398603 | 8.2:-24305669 | MS.gene60163:CDS |
AGAGACTTCATCTGATAATC+AGG | 0.414886 | 8.2:-24304686 | MS.gene60163:CDS |
GTCATTAGCACTTTCATCAC+TGG | 0.424247 | 8.2:+24303886 | None:intergenic |
ATCAGATGTTGCTGGAGATC+AGG | 0.424407 | 8.2:-24304203 | MS.gene60163:CDS |
CGGAGTTTGTACATCATCCT+TGG | 0.439676 | 8.2:+24304348 | None:intergenic |
GCTAGGGAGGAAAATTATTC+CGG | 0.440944 | 8.2:-24304637 | MS.gene60163:CDS |
AAGATCTAAGAACGGCTTCA+AGG | 0.444974 | 8.2:-24305703 | MS.gene60163:CDS |
TTCTGAGCATAAAGAGGATT+CGG | 0.445078 | 8.2:-24305406 | MS.gene60163:CDS |
GCAATGAAGTTGTTAAGTTA+GGG | 0.446418 | 8.2:-24305569 | MS.gene60163:CDS |
TCCTTGGCTGTTTCGTGTGA+CGG | 0.462243 | 8.2:+24304474 | None:intergenic |
CAAGATGGCAATACAAATCA+TGG | 0.470308 | 8.2:-24304145 | MS.gene60163:CDS |
GAGAATGAAAAGATCAAAGA+TGG | 0.475291 | 8.2:-24304976 | MS.gene60163:CDS |
GATTCTAAATCAGATGTTGC+TGG | 0.478943 | 8.2:-24304211 | MS.gene60163:CDS |
GAGAATGAAGAGAACAAAGA+TGG | 0.485331 | 8.2:-24305054 | MS.gene60163:CDS |
GAGAATGAAGAGAACAAAGA+TGG | 0.485331 | 8.2:-24305093 | MS.gene60163:CDS |
AAGTGAGAGTGAGAAGGATC+AGG | 0.486082 | 8.2:-24304452 | MS.gene60163:CDS |
ATCTTTGTTGTCAAATGTGT+TGG | 0.490461 | 8.2:+24304045 | None:intergenic |
ACCGAATGACAATGCAAACT+CGG | 0.494622 | 8.2:-24303924 | MS.gene60163:CDS |
CCGAATACATCATCGCAGAA+TGG | 0.499005 | 8.2:-24304328 | MS.gene60163:CDS |
TTAGATCTTTGACTCCTCCT+GGG | 0.501240 | 8.2:+24305717 | None:intergenic |
CGAATACATCATCGCAGAAT+GGG | 0.506493 | 8.2:-24304327 | MS.gene60163:CDS |
AAGTGTAGAGAAAGAGAATG+AGG | 0.515167 | 8.2:-24305271 | MS.gene60163:CDS |
TGAGACAAAGAGTAACGATA+AGG | 0.520367 | 8.2:-24304848 | MS.gene60163:CDS |
AGATGCAAACTCAAAGAAAG+AGG | 0.524658 | 8.2:-24304269 | MS.gene60163:CDS |
TTCTGAGGAAGATGTAGTAG+TGG | 0.531925 | 8.2:+24304171 | None:intergenic |
ACAGAAGGAGGAGAGAAAGA+AGG | 0.532633 | 8.2:-24304727 | MS.gene60163:CDS |
TAATGCCTCCAGTGCTGTAG+TGG | 0.536214 | 8.2:-24304611 | MS.gene60163:CDS |
ATGAAGTTGTTAAGTTAGGG+AGG | 0.537095 | 8.2:-24305566 | MS.gene60163:CDS |
TTTGTTATCCACTACAGCAC+TGG | 0.540846 | 8.2:+24304603 | None:intergenic |
AGCACTGGAGGCATTATCTC+CGG | 0.541329 | 8.2:+24304618 | None:intergenic |
AGTTGTTAAGTTAGGGAGGA+AGG | 0.542263 | 8.2:-24305562 | MS.gene60163:CDS |
TCAAAATGCTAAGACTGACT+TGG | 0.542530 | 8.2:-24305358 | MS.gene60163:CDS |
CAGAAGGAGGAGAGAAAGAA+GGG | 0.549074 | 8.2:-24304726 | MS.gene60163:CDS |
CATGAGCAAGATAGTAAACA+AGG | 0.550003 | 8.2:-24304769 | MS.gene60163:CDS |
CAAGGGACGGCGGAGACCAA+TGG | 0.550548 | 8.2:-24304751 | MS.gene60163:CDS |
TGAGGAAGATGTAGTAGTGG+TGG | 0.552598 | 8.2:+24304174 | None:intergenic |
GTGAAAAGAACAATGAGGCT+AGG | 0.556837 | 8.2:-24304654 | MS.gene60163:CDS |
GACAGAAAATGATTCACAGA+AGG | 0.558166 | 8.2:-24304425 | MS.gene60163:CDS |
GAAAAGAATTCTGGTCAAGA+AGG | 0.566269 | 8.2:-24304091 | MS.gene60163:CDS |
TACAAATCATGGTGAATACA+AGG | 0.567359 | 8.2:-24304134 | MS.gene60163:CDS |
GCATGTTTAGGTTATCTCCC+AGG | 0.568543 | 8.2:-24305734 | MS.gene60163:CDS |
GCGGAGACCAATGGAACAGA+AGG | 0.571738 | 8.2:-24304742 | MS.gene60163:CDS |
AGAATTACTTTCTGCACTCG+AGG | 0.576669 | 8.2:+24303955 | None:intergenic |
CCAGAATGGTAGTGATGCGA+AGG | 0.580966 | 8.2:-24304809 | MS.gene60163:CDS |
TGAAAAGAACAATGAGGCTA+GGG | 0.583974 | 8.2:-24304653 | MS.gene60163:CDS |
GAGACCAATGGAACAGAAGG+AGG | 0.585754 | 8.2:-24304739 | MS.gene60163:CDS |
TGACAACAAAGATTCTAGCC+AGG | 0.586204 | 8.2:-24303867 | None:intergenic |
AGATAATTCTGAGCATAAAG+AGG | 0.586342 | 8.2:-24305412 | MS.gene60163:CDS |
ATTGCCATCTTGAGTTTCTG+AGG | 0.586725 | 8.2:+24304156 | None:intergenic |
GAATGACAATGCAGAGACCA+AGG | 0.588611 | 8.2:-24305301 | MS.gene60163:CDS |
ACAGAAGTTTCCTCCACATG+AGG | 0.598636 | 8.2:+24305531 | None:intergenic |
TACTACCTCTGATACCTCAT+CGG | 0.598827 | 8.2:-24303996 | MS.gene60163:CDS |
CCAAGGAAGTGAGAGTGAGA+AGG | 0.602518 | 8.2:-24304458 | MS.gene60163:CDS |
AATGAAGAAAGCAACCAGAA+TGG | 0.603174 | 8.2:-24304823 | MS.gene60163:CDS |
GAAGGACCTTAAACCTCATG+TGG | 0.607015 | 8.2:-24305544 | MS.gene60163:CDS |
AATGCTAAGACTGACTTGGA+AGG | 0.608284 | 8.2:-24305354 | MS.gene60163:CDS |
GTTATCCACTACAGCACTGG+AGG | 0.610249 | 8.2:+24304606 | None:intergenic |
TTGTTCCGATGAGGTATCAG+AGG | 0.610717 | 8.2:+24303991 | None:intergenic |
ACAGAAAATGATTCACAGAA+GGG | 0.613293 | 8.2:-24304424 | MS.gene60163:CDS |
CAAGAAGGAACACAAGAAAG+TGG | 0.614187 | 8.2:-24304076 | MS.gene60163:CDS |
TCTTCCTCAGAAACTCAAGA+TGG | 0.618250 | 8.2:-24304160 | MS.gene60163:CDS |
CCGAATGACAATGCAAACTC+GGG | 0.619630 | 8.2:-24303923 | MS.gene60163:CDS |
ACCGTCACACGAAACAGCCA+AGG | 0.625338 | 8.2:-24304475 | MS.gene60163:CDS |
ATTGGATGATGTTAATGGTG+TGG | 0.625827 | 8.2:-24305436 | MS.gene60163:CDS |
GCAAGATAGTAAACAAGGGA+CGG | 0.627652 | 8.2:-24304764 | MS.gene60163:CDS |
CAATGCAGAGACCAAGGAGA+GGG | 0.630030 | 8.2:-24305295 | MS.gene60163:CDS |
GGACACCACTAATGAAAACC+CGG | 0.633456 | 8.2:-24304113 | MS.gene60163:CDS |
AAAGAACAATGAGGCTAGGG+AGG | 0.643597 | 8.2:-24304650 | MS.gene60163:CDS |
AGAAACTGGAGAAAGTAATG+AGG | 0.649473 | 8.2:-24305223 | MS.gene60163:CDS |
TCTGATAATCAGGTTCAGGA+TGG | 0.650784 | 8.2:-24304676 | MS.gene60163:CDS |
TGTTATAGATGCAAGACACA+AGG | 0.650888 | 8.2:-24305511 | MS.gene60163:CDS |
TCGTGTGACGGTAGAAACAG+TGG | 0.651794 | 8.2:+24304486 | None:intergenic |
TGCAAGACACAAGGAAGACG+AGG | 0.658957 | 8.2:-24305502 | MS.gene60163:CDS |
GGACCTTAAACCTCATGTGG+AGG | 0.664100 | 8.2:-24305541 | MS.gene60163:CDS |
AGGAGTCAAAGATCTAAGAA+CGG | 0.671099 | 8.2:-24305711 | MS.gene60163:CDS |
ACAATGCAGAGACCAAGGAG+AGG | 0.673196 | 8.2:-24305296 | MS.gene60163:CDS |
TAGTGATGCGAAGGATCAAG+CGG | 0.673292 | 8.2:-24304800 | MS.gene60163:CDS |
AGATAGTAAACAAGGGACGG+CGG | 0.680895 | 8.2:-24304761 | MS.gene60163:CDS |
AAGACACAAGGAAGACGAGG+AGG | 0.683212 | 8.2:-24305499 | MS.gene60163:CDS |
GGATGGTGAAAAGAACAATG+AGG | 0.685838 | 8.2:-24304659 | MS.gene60163:CDS |
TGATGCGAAGGATCAAGCGG+AGG | 0.696334 | 8.2:-24304797 | MS.gene60163:CDS |
TGTTTAGGTTATCTCCCAGG+AGG | 0.705901 | 8.2:-24305731 | MS.gene60163:CDS |
AGAAACCGGAGAAATTACAG+AGG | 0.706376 | 8.2:-24304902 | MS.gene60163:CDS |
ATGAGCAAGATAGTAAACAA+GGG | 0.719871 | 8.2:-24304768 | MS.gene60163:CDS |
CAAAGATGCTACTAGCAACG+AGG | 0.727750 | 8.2:-24304029 | MS.gene60163:CDS |
AGAGCAGAATAACATCACCA+AGG | 0.736602 | 8.2:-24304365 | MS.gene60163:CDS |
AGAAACTGGAGAAAGTACCG+AGG | 0.756900 | 8.2:-24305169 | MS.gene60163:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
! | AATGAAGAGAAGAAAAATGA+AGG | - | chr8.2:24304666-24304685 | MS.gene60163:CDS | 25.0% |
! | ACAAAATTGGATGATGTTAA+TGG | - | chr8.2:24304159-24304178 | MS.gene60163:CDS | 25.0% |
! | AGAAGAACAATTTGACAAAA+AGG | - | chr8.2:24305043-24305062 | MS.gene60163:CDS | 25.0% |
! | ATGAAGAGAAGAAAAATGAA+GGG | - | chr8.2:24304667-24304686 | MS.gene60163:CDS | 25.0% |
!! | GATTTAGAATCTTCATTGTT+TGG | + | chr8.2:24305380-24305399 | None:intergenic | 25.0% |
!!! | GTTTGGTTAGTTTATCAAAT+TGG | - | chr8.2:24303961-24303980 | MS.gene60163:CDS | 25.0% |
AATGAAGAGAACAAAGAAAC+TGG | - | chr8.2:24304417-24304436 | MS.gene60163:CDS | 30.0% | |
ACAGAAAATGATTCACAGAA+GGG | - | chr8.2:24305176-24305195 | MS.gene60163:CDS | 30.0% | |
AGAGAATGAGGAAATCAAAA+AGG | - | chr8.2:24304341-24304360 | MS.gene60163:CDS | 30.0% | |
AGATAATTCTGAGCATAAAG+AGG | - | chr8.2:24304188-24304207 | MS.gene60163:CDS | 30.0% | |
ATGAGCAAGATAGTAAACAA+GGG | - | chr8.2:24304832-24304851 | MS.gene60163:CDS | 30.0% | |
CTACAAATATGTGTTCTTGT+TGG | - | chr8.2:24303931-24303950 | MS.gene60163:CDS | 30.0% | |
GAGAATGAAAAGATCAAAGA+TGG | - | chr8.2:24304624-24304643 | MS.gene60163:CDS | 30.0% | |
GCAATGAAGTTGTTAAGTTA+GGG | - | chr8.2:24304031-24304050 | MS.gene60163:CDS | 30.0% | |
TACAAATCATGGTGAATACA+AGG | - | chr8.2:24305466-24305485 | MS.gene60163:CDS | 30.0% | |
TGAAGAGAAGAAAAATGAAG+GGG | - | chr8.2:24304668-24304687 | MS.gene60163:CDS | 30.0% | |
! | ATCTTTGTTGTCAAATGTGT+TGG | + | chr8.2:24305558-24305577 | None:intergenic | 30.0% |
AAGTGTAGAGAAAGAGAATG+AGG | - | chr8.2:24304329-24304348 | MS.gene60163:CDS | 35.0% | |
AATGAAGAAAGCAACCAGAA+TGG | - | chr8.2:24304777-24304796 | MS.gene60163:CDS | 35.0% | |
AGAAACTGGAGAAAGTAATG+AGG | - | chr8.2:24304377-24304396 | MS.gene60163:CDS | 35.0% | |
AGAGACTTCATCTGATAATC+AGG | - | chr8.2:24304914-24304933 | MS.gene60163:CDS | 35.0% | |
AGATGCAAACTCAAAGAAAG+AGG | - | chr8.2:24305331-24305350 | MS.gene60163:CDS | 35.0% | |
AGGAGTCAAAGATCTAAGAA+CGG | - | chr8.2:24303889-24303908 | MS.gene60163:CDS | 35.0% | |
ATGAAGTTGTTAAGTTAGGG+AGG | - | chr8.2:24304034-24304053 | MS.gene60163:CDS | 35.0% | |
ATTGGATGATGTTAATGGTG+TGG | - | chr8.2:24304164-24304183 | MS.gene60163:CDS | 35.0% | |
CAAGATGGCAATACAAATCA+TGG | - | chr8.2:24305455-24305474 | MS.gene60163:CDS | 35.0% | |
CATGAGCAAGATAGTAAACA+AGG | - | chr8.2:24304831-24304850 | MS.gene60163:CDS | 35.0% | |
CTTGTTTACTATCTTGCTCA+TGG | + | chr8.2:24304833-24304852 | None:intergenic | 35.0% | |
GAAAAGAATTCTGGTCAAGA+AGG | - | chr8.2:24305509-24305528 | MS.gene60163:CDS | 35.0% | |
GAAGAGAAGAAAAATGAAGG+GGG | - | chr8.2:24304669-24304688 | MS.gene60163:CDS | 35.0% | |
GACAGAAAATGATTCACAGA+AGG | - | chr8.2:24305175-24305194 | MS.gene60163:CDS | 35.0% | |
GAGAATGAAGAGAACAAAGA+TGG | - | chr8.2:24304468-24304487 | MS.gene60163:CDS | 35.0% | |
GATTCTAAATCAGATGTTGC+TGG | - | chr8.2:24305389-24305408 | MS.gene60163:CDS | 35.0% | |
GGAAATCAAAAAGGAAGTAG+AGG | - | chr8.2:24304350-24304369 | MS.gene60163:CDS | 35.0% | |
GGCAATGAAGTTGTTAAGTT+AGG | - | chr8.2:24304030-24304049 | MS.gene60163:CDS | 35.0% | |
TCAAAATGCTAAGACTGACT+TGG | - | chr8.2:24304242-24304261 | MS.gene60163:CDS | 35.0% | |
TGAAAAGAACAATGAGGCTA+GGG | - | chr8.2:24304947-24304966 | MS.gene60163:CDS | 35.0% | |
TGAGACAAAGAGTAACGATA+AGG | - | chr8.2:24304752-24304771 | MS.gene60163:CDS | 35.0% | |
TGTTATAGATGCAAGACACA+AGG | - | chr8.2:24304089-24304108 | MS.gene60163:CDS | 35.0% | |
TTCATCTGATAATCAGGTTC+AGG | - | chr8.2:24304920-24304939 | MS.gene60163:CDS | 35.0% | |
TTCTGAGCATAAAGAGGATT+CGG | - | chr8.2:24304194-24304213 | MS.gene60163:CDS | 35.0% | |
! | ATCTTTCTTTTGTTCCGATG+AGG | + | chr8.2:24305621-24305640 | None:intergenic | 35.0% |
! | CTTTTCCTCTGTAATTTCTC+CGG | + | chr8.2:24304706-24304725 | None:intergenic | 35.0% |
! | TCTTGACCAGAATTCTTTTC+CGG | + | chr8.2:24305509-24305528 | None:intergenic | 35.0% |
! | TTCTTGTTGGTGTTTGTGTT+TGG | - | chr8.2:24303944-24303963 | MS.gene60163:CDS | 35.0% |
AAGATCTAAGAACGGCTTCA+AGG | - | chr8.2:24303897-24303916 | MS.gene60163:CDS | 40.0% | |
ACCGAATGACAATGCAAACT+CGG | - | chr8.2:24305676-24305695 | MS.gene60163:CDS | 40.0% | |
AGAAACCGGAGAAATTACAG+AGG | - | chr8.2:24304698-24304717 | MS.gene60163:CDS | 40.0% | |
AGAATTACTTTCTGCACTCG+AGG | + | chr8.2:24305648-24305667 | None:intergenic | 40.0% | |
AGAGCAGAATAACATCACCA+AGG | - | chr8.2:24305235-24305254 | MS.gene60163:CDS | 40.0% | |
AGTTGTTAAGTTAGGGAGGA+AGG | - | chr8.2:24304038-24304057 | MS.gene60163:CDS | 40.0% | |
ATTGCCATCTTGAGTTTCTG+AGG | + | chr8.2:24305447-24305466 | None:intergenic | 40.0% | |
CAAGAAGGAACACAAGAAAG+TGG | - | chr8.2:24305524-24305543 | MS.gene60163:CDS | 40.0% | |
CCATTCTGCGATGATGTATT+CGG | + | chr8.2:24305275-24305294 | None:intergenic | 40.0% | |
CGAATACATCATCGCAGAAT+GGG | - | chr8.2:24305273-24305292 | MS.gene60163:CDS | 40.0% | |
GAAAACCCGGAAAAGAATTC+TGG | - | chr8.2:24305500-24305519 | MS.gene60163:CDS | 40.0% | |
GCAAGATAGTAAACAAGGGA+CGG | - | chr8.2:24304836-24304855 | MS.gene60163:CDS | 40.0% | |
GCATGACGAGCAAACAAAAT+TGG | - | chr8.2:24304146-24304165 | MS.gene60163:CDS | 40.0% | |
GCTAGGGAGGAAAATTATTC+CGG | - | chr8.2:24304963-24304982 | MS.gene60163:CDS | 40.0% | |
GGATGGTGAAAAGAACAATG+AGG | - | chr8.2:24304941-24304960 | MS.gene60163:CDS | 40.0% | |
GTCATTAGCACTTTCATCAC+TGG | + | chr8.2:24305717-24305736 | None:intergenic | 40.0% | |
GTGAAAAGAACAATGAGGCT+AGG | - | chr8.2:24304946-24304965 | MS.gene60163:CDS | 40.0% | |
TACTACCTCTGATACCTCAT+CGG | - | chr8.2:24305604-24305623 | MS.gene60163:CDS | 40.0% | |
TCTGATAATCAGGTTCAGGA+TGG | - | chr8.2:24304924-24304943 | MS.gene60163:CDS | 40.0% | |
TCTTCCTCAGAAACTCAAGA+TGG | - | chr8.2:24305440-24305459 | MS.gene60163:CDS | 40.0% | |
TTAGATCTTTGACTCCTCCT+GGG | + | chr8.2:24303886-24303905 | None:intergenic | 40.0% | |
TTTCCTCCACATGAGGTTTA+AGG | + | chr8.2:24304065-24304084 | None:intergenic | 40.0% | |
! | AGAAGGGCATGATAAGATTC+AGG | - | chr8.2:24304890-24304909 | MS.gene60163:CDS | 40.0% |
! | CTCTAGATGACTCTTTTCCT+CGG | + | chr8.2:24304451-24304470 | None:intergenic | 40.0% |
! | CTTGACCAGAATTCTTTTCC+GGG | + | chr8.2:24305508-24305527 | None:intergenic | 40.0% |
! | CTTTTCCGGGTTTTCATTAG+TGG | + | chr8.2:24305495-24305514 | None:intergenic | 40.0% |
! | TTCTGAGGAAGATGTAGTAG+TGG | + | chr8.2:24305432-24305451 | None:intergenic | 40.0% |
! | TTTGTTATCCACTACAGCAC+TGG | + | chr8.2:24305000-24305019 | None:intergenic | 40.0% |
!! | AATGCTAAGACTGACTTGGA+AGG | - | chr8.2:24304246-24304265 | MS.gene60163:CDS | 40.0% |
AAAGAACAATGAGGCTAGGG+AGG | - | chr8.2:24304950-24304969 | MS.gene60163:CDS | 45.0% | |
AAGTGAGAGTGAGAAGGATC+AGG | - | chr8.2:24305148-24305167 | MS.gene60163:CDS | 45.0% | |
ACAGAAGGAGGAGAGAAAGA+AGG | - | chr8.2:24304873-24304892 | MS.gene60163:CDS | 45.0% | |
ACAGAAGTTTCCTCCACATG+AGG | + | chr8.2:24304072-24304091 | None:intergenic | 45.0% | |
AGATAGTAAACAAGGGACGG+CGG | - | chr8.2:24304839-24304858 | MS.gene60163:CDS | 45.0% | |
ATCAGATGTTGCTGGAGATC+AGG | - | chr8.2:24305397-24305416 | MS.gene60163:CDS | 45.0% | |
CAAAGATGCTACTAGCAACG+AGG | - | chr8.2:24305571-24305590 | MS.gene60163:CDS | 45.0% | |
CAGAAGGAGGAGAGAAAGAA+GGG | - | chr8.2:24304874-24304893 | MS.gene60163:CDS | 45.0% | |
CCCGAGTTTGCATTGTCATT+CGG | + | chr8.2:24305680-24305699 | None:intergenic | 45.0% | |
CCGAATACATCATCGCAGAA+TGG | - | chr8.2:24305272-24305291 | MS.gene60163:CDS | 45.0% | |
CCGAATGACAATGCAAACTC+GGG | - | chr8.2:24305677-24305696 | MS.gene60163:CDS | 45.0% | |
CGGAGTTTGTACATCATCCT+TGG | + | chr8.2:24305255-24305274 | None:intergenic | 45.0% | |
CTTAGATCTTTGACTCCTCC+TGG | + | chr8.2:24303887-24303906 | None:intergenic | 45.0% | |
GAAGGACCTTAAACCTCATG+TGG | - | chr8.2:24304056-24304075 | MS.gene60163:CDS | 45.0% | |
GAAGTAGAGGACACAGAAAC+TGG | - | chr8.2:24304363-24304382 | MS.gene60163:CDS | 45.0% | |
GAATGACAATGCAGAGACCA+AGG | - | chr8.2:24304299-24304318 | MS.gene60163:CDS | 45.0% | |
GGACACCACTAATGAAAACC+CGG | - | chr8.2:24305487-24305506 | MS.gene60163:CDS | 45.0% | |
TAGTGATGCGAAGGATCAAG+CGG | - | chr8.2:24304800-24304819 | MS.gene60163:CDS | 45.0% | |
TATGGAGCGAGCACAAAAAC+TGG | - | chr8.2:24304009-24304028 | MS.gene60163:CDS | 45.0% | |
TGAGGAAGATGTAGTAGTGG+TGG | + | chr8.2:24305429-24305448 | None:intergenic | 45.0% | |
! | TGTTTAGGTTATCTCCCAGG+AGG | - | chr8.2:24303869-24303888 | MS.gene60163:CDS | 45.0% |
! | TTGTTCCGATGAGGTATCAG+AGG | + | chr8.2:24305612-24305631 | None:intergenic | 45.0% |
!! | AGAAACTGGAGAAAGTACCG+AGG | - | chr8.2:24304431-24304450 | MS.gene60163:CDS | 45.0% |
AAGACACAAGGAAGACGAGG+AGG | - | chr8.2:24304101-24304120 | MS.gene60163:CDS | 50.0% | |
ACAATGCAGAGACCAAGGAG+AGG | - | chr8.2:24304304-24304323 | MS.gene60163:CDS | 50.0% | |
CAATGCAGAGACCAAGGAGA+GGG | - | chr8.2:24304305-24304324 | MS.gene60163:CDS | 50.0% | |
CCAAGGAAGTGAGAGTGAGA+AGG | - | chr8.2:24305142-24305161 | MS.gene60163:CDS | 50.0% | |
CCTTCGCATCACTACCATTC+TGG | + | chr8.2:24304794-24304813 | None:intergenic | 50.0% | |
CCTTCTCACTCTCACTTCCT+TGG | + | chr8.2:24305145-24305164 | None:intergenic | 50.0% | |
CTCTACACTTTCCCTCTCCT+TGG | + | chr8.2:24304319-24304338 | None:intergenic | 50.0% | |
CTCTCCTCCTTCTGTTCCAT+TGG | + | chr8.2:24304868-24304887 | None:intergenic | 50.0% | |
GAAGGGGGAGAGAAAGAAAC+CGG | - | chr8.2:24304684-24304703 | MS.gene60163:CDS | 50.0% | |
GAGACCAATGGAACAGAAGG+AGG | - | chr8.2:24304861-24304880 | MS.gene60163:CDS | 50.0% | |
GGACCTTAAACCTCATGTGG+AGG | - | chr8.2:24304059-24304078 | MS.gene60163:CDS | 50.0% | |
TAATGCCTCCAGTGCTGTAG+TGG | - | chr8.2:24304989-24305008 | MS.gene60163:CDS | 50.0% | |
TCGTGTGACGGTAGAAACAG+TGG | + | chr8.2:24305117-24305136 | None:intergenic | 50.0% | |
TGCAAGACACAAGGAAGACG+AGG | - | chr8.2:24304098-24304117 | MS.gene60163:CDS | 50.0% | |
! | CCAGAATGGTAGTGATGCGA+AGG | - | chr8.2:24304791-24304810 | MS.gene60163:CDS | 50.0% |
! | GTTATCCACTACAGCACTGG+AGG | + | chr8.2:24304997-24305016 | None:intergenic | 50.0% |
! | TCCTTGGCTGTTTCGTGTGA+CGG | + | chr8.2:24305129-24305148 | None:intergenic | 50.0% |
!! | AGCACTGGAGGCATTATCTC+CGG | + | chr8.2:24304985-24305004 | None:intergenic | 50.0% |
!! | CGCGAGCAAAAAGCGTCTTA+TGG | - | chr8.2:24303991-24304010 | MS.gene60163:CDS | 50.0% |
ACCGTCACACGAAACAGCCA+AGG | - | chr8.2:24305125-24305144 | MS.gene60163:CDS | 55.0% | |
GCGGAGACCAATGGAACAGA+AGG | - | chr8.2:24304858-24304877 | MS.gene60163:CDS | 55.0% | |
TGATGCGAAGGATCAAGCGG+AGG | - | chr8.2:24304803-24304822 | MS.gene60163:CDS | 55.0% | |
CAAGGGACGGCGGAGACCAA+TGG | - | chr8.2:24304849-24304868 | MS.gene60163:CDS | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr8.2 | gene | 24303868 | 24305754 | 24303868 | ID=MS.gene60163 |
chr8.2 | mRNA | 24303868 | 24305754 | 24303868 | ID=MS.gene60163.t1;Parent=MS.gene60163 |
chr8.2 | exon | 24303868 | 24305754 | 24303868 | ID=MS.gene60163.t1.exon1;Parent=MS.gene60163.t1 |
chr8.2 | CDS | 24303868 | 24305754 | 24303868 | ID=cds.MS.gene60163.t1;Parent=MS.gene60163.t1 |
Gene Sequence |
Protein sequence |