AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene60163


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene60163.t1 MTR_4g097790 88.685 654 49 4 1 629 1 654 0.0 917
MS.gene60163.t1 MTR_5g005430 44.156 77 31 3 1 68 1 74 2.41e-14 76.6
MS.gene60163.t1 MTR_1g105890 35.025 197 97 8 1 185 1 178 6.55e-14 75.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene60163.t1 AT4G33740 51.429 70 25 2 8 68 7 76 2.83e-17 85.5
MS.gene60163.t1 AT4G33740 51.429 70 25 2 8 68 7 76 2.83e-17 85.5
MS.gene60163.t1 AT4G33740 51.429 70 25 2 8 68 7 76 2.83e-17 85.5
MS.gene60163.t1 AT4G33740 51.429 70 25 2 8 68 7 76 2.83e-17 85.5
MS.gene60163.t1 AT4G33740 51.429 70 25 2 8 68 7 76 2.83e-17 85.5

Find 110 sgRNAs with CRISPR-Local

Find 120 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTCCTCCACATGAGGTTTA+AGG 0.231421 8.2:+24305538 None:intergenic
GTTTGGTTAGTTTATCAAAT+TGG 0.237146 8.2:-24305639 MS.gene60163:CDS
GCATGACGAGCAAACAAAAT+TGG 0.258368 8.2:-24305454 MS.gene60163:CDS
GAGGAGAATTAGGCATGTTT+AGG 0.292908 8.2:-24305746 None:intergenic
GGCAATGAAGTTGTTAAGTT+AGG 0.297885 8.2:-24305570 MS.gene60163:CDS
CTCTCCTCCTTCTGTTCCAT+TGG 0.306465 8.2:+24304735 None:intergenic
AGAAGAACAATTTGACAAAA+AGG 0.307480 8.2:-24304557 MS.gene60163:CDS
GATTTAGAATCTTCATTGTT+TGG 0.315496 8.2:+24304223 None:intergenic
AGAGAATGAGGAAATCAAAA+AGG 0.319492 8.2:-24305259 MS.gene60163:CDS
CCTTCGCATCACTACCATTC+TGG 0.322961 8.2:+24304809 None:intergenic
CTCTACACTTTCCCTCTCCT+TGG 0.335719 8.2:+24305284 None:intergenic
ACAAAATTGGATGATGTTAA+TGG 0.336252 8.2:-24305441 MS.gene60163:CDS
CCATTCTGCGATGATGTATT+CGG 0.342453 8.2:+24304328 None:intergenic
CTTAGATCTTTGACTCCTCC+TGG 0.358867 8.2:+24305716 None:intergenic
AGAAGGGCATGATAAGATTC+AGG 0.361284 8.2:-24304710 MS.gene60163:CDS
GAAAACCCGGAAAAGAATTC+TGG 0.364276 8.2:-24304100 MS.gene60163:CDS
CCCGAGTTTGCATTGTCATT+CGG 0.373470 8.2:+24303923 None:intergenic
AATGAAGAGAACAAAGAAAC+TGG 0.374256 8.2:-24305183 MS.gene60163:CDS
GAAGTAGAGGACACAGAAAC+TGG 0.375669 8.2:-24305237 MS.gene60163:CDS
TTCTTGTTGGTGTTTGTGTT+TGG 0.390640 8.2:-24305656 MS.gene60163:CDS
CTTGTTTACTATCTTGCTCA+TGG 0.391649 8.2:+24304770 None:intergenic
TTCATCTGATAATCAGGTTC+AGG 0.393266 8.2:-24304680 MS.gene60163:CDS
CCTTCTCACTCTCACTTCCT+TGG 0.393945 8.2:+24304458 None:intergenic
CTACAAATATGTGTTCTTGT+TGG 0.398603 8.2:-24305669 MS.gene60163:CDS
AGAGACTTCATCTGATAATC+AGG 0.414886 8.2:-24304686 MS.gene60163:CDS
GTCATTAGCACTTTCATCAC+TGG 0.424247 8.2:+24303886 None:intergenic
ATCAGATGTTGCTGGAGATC+AGG 0.424407 8.2:-24304203 MS.gene60163:CDS
CGGAGTTTGTACATCATCCT+TGG 0.439676 8.2:+24304348 None:intergenic
GCTAGGGAGGAAAATTATTC+CGG 0.440944 8.2:-24304637 MS.gene60163:CDS
AAGATCTAAGAACGGCTTCA+AGG 0.444974 8.2:-24305703 MS.gene60163:CDS
TTCTGAGCATAAAGAGGATT+CGG 0.445078 8.2:-24305406 MS.gene60163:CDS
GCAATGAAGTTGTTAAGTTA+GGG 0.446418 8.2:-24305569 MS.gene60163:CDS
TCCTTGGCTGTTTCGTGTGA+CGG 0.462243 8.2:+24304474 None:intergenic
CAAGATGGCAATACAAATCA+TGG 0.470308 8.2:-24304145 MS.gene60163:CDS
GAGAATGAAAAGATCAAAGA+TGG 0.475291 8.2:-24304976 MS.gene60163:CDS
GATTCTAAATCAGATGTTGC+TGG 0.478943 8.2:-24304211 MS.gene60163:CDS
GAGAATGAAGAGAACAAAGA+TGG 0.485331 8.2:-24305054 MS.gene60163:CDS
GAGAATGAAGAGAACAAAGA+TGG 0.485331 8.2:-24305093 MS.gene60163:CDS
AAGTGAGAGTGAGAAGGATC+AGG 0.486082 8.2:-24304452 MS.gene60163:CDS
ATCTTTGTTGTCAAATGTGT+TGG 0.490461 8.2:+24304045 None:intergenic
ACCGAATGACAATGCAAACT+CGG 0.494622 8.2:-24303924 MS.gene60163:CDS
CCGAATACATCATCGCAGAA+TGG 0.499005 8.2:-24304328 MS.gene60163:CDS
TTAGATCTTTGACTCCTCCT+GGG 0.501240 8.2:+24305717 None:intergenic
CGAATACATCATCGCAGAAT+GGG 0.506493 8.2:-24304327 MS.gene60163:CDS
AAGTGTAGAGAAAGAGAATG+AGG 0.515167 8.2:-24305271 MS.gene60163:CDS
TGAGACAAAGAGTAACGATA+AGG 0.520367 8.2:-24304848 MS.gene60163:CDS
AGATGCAAACTCAAAGAAAG+AGG 0.524658 8.2:-24304269 MS.gene60163:CDS
TTCTGAGGAAGATGTAGTAG+TGG 0.531925 8.2:+24304171 None:intergenic
ACAGAAGGAGGAGAGAAAGA+AGG 0.532633 8.2:-24304727 MS.gene60163:CDS
TAATGCCTCCAGTGCTGTAG+TGG 0.536214 8.2:-24304611 MS.gene60163:CDS
ATGAAGTTGTTAAGTTAGGG+AGG 0.537095 8.2:-24305566 MS.gene60163:CDS
TTTGTTATCCACTACAGCAC+TGG 0.540846 8.2:+24304603 None:intergenic
AGCACTGGAGGCATTATCTC+CGG 0.541329 8.2:+24304618 None:intergenic
AGTTGTTAAGTTAGGGAGGA+AGG 0.542263 8.2:-24305562 MS.gene60163:CDS
TCAAAATGCTAAGACTGACT+TGG 0.542530 8.2:-24305358 MS.gene60163:CDS
CAGAAGGAGGAGAGAAAGAA+GGG 0.549074 8.2:-24304726 MS.gene60163:CDS
CATGAGCAAGATAGTAAACA+AGG 0.550003 8.2:-24304769 MS.gene60163:CDS
CAAGGGACGGCGGAGACCAA+TGG 0.550548 8.2:-24304751 MS.gene60163:CDS
TGAGGAAGATGTAGTAGTGG+TGG 0.552598 8.2:+24304174 None:intergenic
GTGAAAAGAACAATGAGGCT+AGG 0.556837 8.2:-24304654 MS.gene60163:CDS
GACAGAAAATGATTCACAGA+AGG 0.558166 8.2:-24304425 MS.gene60163:CDS
GAAAAGAATTCTGGTCAAGA+AGG 0.566269 8.2:-24304091 MS.gene60163:CDS
TACAAATCATGGTGAATACA+AGG 0.567359 8.2:-24304134 MS.gene60163:CDS
GCATGTTTAGGTTATCTCCC+AGG 0.568543 8.2:-24305734 MS.gene60163:CDS
GCGGAGACCAATGGAACAGA+AGG 0.571738 8.2:-24304742 MS.gene60163:CDS
AGAATTACTTTCTGCACTCG+AGG 0.576669 8.2:+24303955 None:intergenic
CCAGAATGGTAGTGATGCGA+AGG 0.580966 8.2:-24304809 MS.gene60163:CDS
TGAAAAGAACAATGAGGCTA+GGG 0.583974 8.2:-24304653 MS.gene60163:CDS
GAGACCAATGGAACAGAAGG+AGG 0.585754 8.2:-24304739 MS.gene60163:CDS
TGACAACAAAGATTCTAGCC+AGG 0.586204 8.2:-24303867 None:intergenic
AGATAATTCTGAGCATAAAG+AGG 0.586342 8.2:-24305412 MS.gene60163:CDS
ATTGCCATCTTGAGTTTCTG+AGG 0.586725 8.2:+24304156 None:intergenic
GAATGACAATGCAGAGACCA+AGG 0.588611 8.2:-24305301 MS.gene60163:CDS
ACAGAAGTTTCCTCCACATG+AGG 0.598636 8.2:+24305531 None:intergenic
TACTACCTCTGATACCTCAT+CGG 0.598827 8.2:-24303996 MS.gene60163:CDS
CCAAGGAAGTGAGAGTGAGA+AGG 0.602518 8.2:-24304458 MS.gene60163:CDS
AATGAAGAAAGCAACCAGAA+TGG 0.603174 8.2:-24304823 MS.gene60163:CDS
GAAGGACCTTAAACCTCATG+TGG 0.607015 8.2:-24305544 MS.gene60163:CDS
AATGCTAAGACTGACTTGGA+AGG 0.608284 8.2:-24305354 MS.gene60163:CDS
GTTATCCACTACAGCACTGG+AGG 0.610249 8.2:+24304606 None:intergenic
TTGTTCCGATGAGGTATCAG+AGG 0.610717 8.2:+24303991 None:intergenic
ACAGAAAATGATTCACAGAA+GGG 0.613293 8.2:-24304424 MS.gene60163:CDS
CAAGAAGGAACACAAGAAAG+TGG 0.614187 8.2:-24304076 MS.gene60163:CDS
TCTTCCTCAGAAACTCAAGA+TGG 0.618250 8.2:-24304160 MS.gene60163:CDS
CCGAATGACAATGCAAACTC+GGG 0.619630 8.2:-24303923 MS.gene60163:CDS
ACCGTCACACGAAACAGCCA+AGG 0.625338 8.2:-24304475 MS.gene60163:CDS
ATTGGATGATGTTAATGGTG+TGG 0.625827 8.2:-24305436 MS.gene60163:CDS
GCAAGATAGTAAACAAGGGA+CGG 0.627652 8.2:-24304764 MS.gene60163:CDS
CAATGCAGAGACCAAGGAGA+GGG 0.630030 8.2:-24305295 MS.gene60163:CDS
GGACACCACTAATGAAAACC+CGG 0.633456 8.2:-24304113 MS.gene60163:CDS
AAAGAACAATGAGGCTAGGG+AGG 0.643597 8.2:-24304650 MS.gene60163:CDS
AGAAACTGGAGAAAGTAATG+AGG 0.649473 8.2:-24305223 MS.gene60163:CDS
TCTGATAATCAGGTTCAGGA+TGG 0.650784 8.2:-24304676 MS.gene60163:CDS
TGTTATAGATGCAAGACACA+AGG 0.650888 8.2:-24305511 MS.gene60163:CDS
TCGTGTGACGGTAGAAACAG+TGG 0.651794 8.2:+24304486 None:intergenic
TGCAAGACACAAGGAAGACG+AGG 0.658957 8.2:-24305502 MS.gene60163:CDS
GGACCTTAAACCTCATGTGG+AGG 0.664100 8.2:-24305541 MS.gene60163:CDS
AGGAGTCAAAGATCTAAGAA+CGG 0.671099 8.2:-24305711 MS.gene60163:CDS
ACAATGCAGAGACCAAGGAG+AGG 0.673196 8.2:-24305296 MS.gene60163:CDS
TAGTGATGCGAAGGATCAAG+CGG 0.673292 8.2:-24304800 MS.gene60163:CDS
AGATAGTAAACAAGGGACGG+CGG 0.680895 8.2:-24304761 MS.gene60163:CDS
AAGACACAAGGAAGACGAGG+AGG 0.683212 8.2:-24305499 MS.gene60163:CDS
GGATGGTGAAAAGAACAATG+AGG 0.685838 8.2:-24304659 MS.gene60163:CDS
TGATGCGAAGGATCAAGCGG+AGG 0.696334 8.2:-24304797 MS.gene60163:CDS
TGTTTAGGTTATCTCCCAGG+AGG 0.705901 8.2:-24305731 MS.gene60163:CDS
AGAAACCGGAGAAATTACAG+AGG 0.706376 8.2:-24304902 MS.gene60163:CDS
ATGAGCAAGATAGTAAACAA+GGG 0.719871 8.2:-24304768 MS.gene60163:CDS
CAAAGATGCTACTAGCAACG+AGG 0.727750 8.2:-24304029 MS.gene60163:CDS
AGAGCAGAATAACATCACCA+AGG 0.736602 8.2:-24304365 MS.gene60163:CDS
AGAAACTGGAGAAAGTACCG+AGG 0.756900 8.2:-24305169 MS.gene60163:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
! AATGAAGAGAAGAAAAATGA+AGG - chr8.2:24304666-24304685 MS.gene60163:CDS 25.0%
! ACAAAATTGGATGATGTTAA+TGG - chr8.2:24304159-24304178 MS.gene60163:CDS 25.0%
! AGAAGAACAATTTGACAAAA+AGG - chr8.2:24305043-24305062 MS.gene60163:CDS 25.0%
! ATGAAGAGAAGAAAAATGAA+GGG - chr8.2:24304667-24304686 MS.gene60163:CDS 25.0%
!! GATTTAGAATCTTCATTGTT+TGG + chr8.2:24305380-24305399 None:intergenic 25.0%
!!! GTTTGGTTAGTTTATCAAAT+TGG - chr8.2:24303961-24303980 MS.gene60163:CDS 25.0%
AATGAAGAGAACAAAGAAAC+TGG - chr8.2:24304417-24304436 MS.gene60163:CDS 30.0%
ACAGAAAATGATTCACAGAA+GGG - chr8.2:24305176-24305195 MS.gene60163:CDS 30.0%
AGAGAATGAGGAAATCAAAA+AGG - chr8.2:24304341-24304360 MS.gene60163:CDS 30.0%
AGATAATTCTGAGCATAAAG+AGG - chr8.2:24304188-24304207 MS.gene60163:CDS 30.0%
ATGAGCAAGATAGTAAACAA+GGG - chr8.2:24304832-24304851 MS.gene60163:CDS 30.0%
CTACAAATATGTGTTCTTGT+TGG - chr8.2:24303931-24303950 MS.gene60163:CDS 30.0%
GAGAATGAAAAGATCAAAGA+TGG - chr8.2:24304624-24304643 MS.gene60163:CDS 30.0%
GCAATGAAGTTGTTAAGTTA+GGG - chr8.2:24304031-24304050 MS.gene60163:CDS 30.0%
TACAAATCATGGTGAATACA+AGG - chr8.2:24305466-24305485 MS.gene60163:CDS 30.0%
TGAAGAGAAGAAAAATGAAG+GGG - chr8.2:24304668-24304687 MS.gene60163:CDS 30.0%
! ATCTTTGTTGTCAAATGTGT+TGG + chr8.2:24305558-24305577 None:intergenic 30.0%
AAGTGTAGAGAAAGAGAATG+AGG - chr8.2:24304329-24304348 MS.gene60163:CDS 35.0%
AATGAAGAAAGCAACCAGAA+TGG - chr8.2:24304777-24304796 MS.gene60163:CDS 35.0%
AGAAACTGGAGAAAGTAATG+AGG - chr8.2:24304377-24304396 MS.gene60163:CDS 35.0%
AGAGACTTCATCTGATAATC+AGG - chr8.2:24304914-24304933 MS.gene60163:CDS 35.0%
AGATGCAAACTCAAAGAAAG+AGG - chr8.2:24305331-24305350 MS.gene60163:CDS 35.0%
AGGAGTCAAAGATCTAAGAA+CGG - chr8.2:24303889-24303908 MS.gene60163:CDS 35.0%
ATGAAGTTGTTAAGTTAGGG+AGG - chr8.2:24304034-24304053 MS.gene60163:CDS 35.0%
ATTGGATGATGTTAATGGTG+TGG - chr8.2:24304164-24304183 MS.gene60163:CDS 35.0%
CAAGATGGCAATACAAATCA+TGG - chr8.2:24305455-24305474 MS.gene60163:CDS 35.0%
CATGAGCAAGATAGTAAACA+AGG - chr8.2:24304831-24304850 MS.gene60163:CDS 35.0%
CTTGTTTACTATCTTGCTCA+TGG + chr8.2:24304833-24304852 None:intergenic 35.0%
GAAAAGAATTCTGGTCAAGA+AGG - chr8.2:24305509-24305528 MS.gene60163:CDS 35.0%
GAAGAGAAGAAAAATGAAGG+GGG - chr8.2:24304669-24304688 MS.gene60163:CDS 35.0%
GACAGAAAATGATTCACAGA+AGG - chr8.2:24305175-24305194 MS.gene60163:CDS 35.0%
GAGAATGAAGAGAACAAAGA+TGG - chr8.2:24304468-24304487 MS.gene60163:CDS 35.0%
GATTCTAAATCAGATGTTGC+TGG - chr8.2:24305389-24305408 MS.gene60163:CDS 35.0%
GGAAATCAAAAAGGAAGTAG+AGG - chr8.2:24304350-24304369 MS.gene60163:CDS 35.0%
GGCAATGAAGTTGTTAAGTT+AGG - chr8.2:24304030-24304049 MS.gene60163:CDS 35.0%
TCAAAATGCTAAGACTGACT+TGG - chr8.2:24304242-24304261 MS.gene60163:CDS 35.0%
TGAAAAGAACAATGAGGCTA+GGG - chr8.2:24304947-24304966 MS.gene60163:CDS 35.0%
TGAGACAAAGAGTAACGATA+AGG - chr8.2:24304752-24304771 MS.gene60163:CDS 35.0%
TGTTATAGATGCAAGACACA+AGG - chr8.2:24304089-24304108 MS.gene60163:CDS 35.0%
TTCATCTGATAATCAGGTTC+AGG - chr8.2:24304920-24304939 MS.gene60163:CDS 35.0%
TTCTGAGCATAAAGAGGATT+CGG - chr8.2:24304194-24304213 MS.gene60163:CDS 35.0%
! ATCTTTCTTTTGTTCCGATG+AGG + chr8.2:24305621-24305640 None:intergenic 35.0%
! CTTTTCCTCTGTAATTTCTC+CGG + chr8.2:24304706-24304725 None:intergenic 35.0%
! TCTTGACCAGAATTCTTTTC+CGG + chr8.2:24305509-24305528 None:intergenic 35.0%
! TTCTTGTTGGTGTTTGTGTT+TGG - chr8.2:24303944-24303963 MS.gene60163:CDS 35.0%
AAGATCTAAGAACGGCTTCA+AGG - chr8.2:24303897-24303916 MS.gene60163:CDS 40.0%
ACCGAATGACAATGCAAACT+CGG - chr8.2:24305676-24305695 MS.gene60163:CDS 40.0%
AGAAACCGGAGAAATTACAG+AGG - chr8.2:24304698-24304717 MS.gene60163:CDS 40.0%
AGAATTACTTTCTGCACTCG+AGG + chr8.2:24305648-24305667 None:intergenic 40.0%
AGAGCAGAATAACATCACCA+AGG - chr8.2:24305235-24305254 MS.gene60163:CDS 40.0%
AGTTGTTAAGTTAGGGAGGA+AGG - chr8.2:24304038-24304057 MS.gene60163:CDS 40.0%
ATTGCCATCTTGAGTTTCTG+AGG + chr8.2:24305447-24305466 None:intergenic 40.0%
CAAGAAGGAACACAAGAAAG+TGG - chr8.2:24305524-24305543 MS.gene60163:CDS 40.0%
CCATTCTGCGATGATGTATT+CGG + chr8.2:24305275-24305294 None:intergenic 40.0%
CGAATACATCATCGCAGAAT+GGG - chr8.2:24305273-24305292 MS.gene60163:CDS 40.0%
GAAAACCCGGAAAAGAATTC+TGG - chr8.2:24305500-24305519 MS.gene60163:CDS 40.0%
GCAAGATAGTAAACAAGGGA+CGG - chr8.2:24304836-24304855 MS.gene60163:CDS 40.0%
GCATGACGAGCAAACAAAAT+TGG - chr8.2:24304146-24304165 MS.gene60163:CDS 40.0%
GCTAGGGAGGAAAATTATTC+CGG - chr8.2:24304963-24304982 MS.gene60163:CDS 40.0%
GGATGGTGAAAAGAACAATG+AGG - chr8.2:24304941-24304960 MS.gene60163:CDS 40.0%
GTCATTAGCACTTTCATCAC+TGG + chr8.2:24305717-24305736 None:intergenic 40.0%
GTGAAAAGAACAATGAGGCT+AGG - chr8.2:24304946-24304965 MS.gene60163:CDS 40.0%
TACTACCTCTGATACCTCAT+CGG - chr8.2:24305604-24305623 MS.gene60163:CDS 40.0%
TCTGATAATCAGGTTCAGGA+TGG - chr8.2:24304924-24304943 MS.gene60163:CDS 40.0%
TCTTCCTCAGAAACTCAAGA+TGG - chr8.2:24305440-24305459 MS.gene60163:CDS 40.0%
TTAGATCTTTGACTCCTCCT+GGG + chr8.2:24303886-24303905 None:intergenic 40.0%
TTTCCTCCACATGAGGTTTA+AGG + chr8.2:24304065-24304084 None:intergenic 40.0%
! AGAAGGGCATGATAAGATTC+AGG - chr8.2:24304890-24304909 MS.gene60163:CDS 40.0%
! CTCTAGATGACTCTTTTCCT+CGG + chr8.2:24304451-24304470 None:intergenic 40.0%
! CTTGACCAGAATTCTTTTCC+GGG + chr8.2:24305508-24305527 None:intergenic 40.0%
! CTTTTCCGGGTTTTCATTAG+TGG + chr8.2:24305495-24305514 None:intergenic 40.0%
! TTCTGAGGAAGATGTAGTAG+TGG + chr8.2:24305432-24305451 None:intergenic 40.0%
! TTTGTTATCCACTACAGCAC+TGG + chr8.2:24305000-24305019 None:intergenic 40.0%
!! AATGCTAAGACTGACTTGGA+AGG - chr8.2:24304246-24304265 MS.gene60163:CDS 40.0%
AAAGAACAATGAGGCTAGGG+AGG - chr8.2:24304950-24304969 MS.gene60163:CDS 45.0%
AAGTGAGAGTGAGAAGGATC+AGG - chr8.2:24305148-24305167 MS.gene60163:CDS 45.0%
ACAGAAGGAGGAGAGAAAGA+AGG - chr8.2:24304873-24304892 MS.gene60163:CDS 45.0%
ACAGAAGTTTCCTCCACATG+AGG + chr8.2:24304072-24304091 None:intergenic 45.0%
AGATAGTAAACAAGGGACGG+CGG - chr8.2:24304839-24304858 MS.gene60163:CDS 45.0%
ATCAGATGTTGCTGGAGATC+AGG - chr8.2:24305397-24305416 MS.gene60163:CDS 45.0%
CAAAGATGCTACTAGCAACG+AGG - chr8.2:24305571-24305590 MS.gene60163:CDS 45.0%
CAGAAGGAGGAGAGAAAGAA+GGG - chr8.2:24304874-24304893 MS.gene60163:CDS 45.0%
CCCGAGTTTGCATTGTCATT+CGG + chr8.2:24305680-24305699 None:intergenic 45.0%
CCGAATACATCATCGCAGAA+TGG - chr8.2:24305272-24305291 MS.gene60163:CDS 45.0%
CCGAATGACAATGCAAACTC+GGG - chr8.2:24305677-24305696 MS.gene60163:CDS 45.0%
CGGAGTTTGTACATCATCCT+TGG + chr8.2:24305255-24305274 None:intergenic 45.0%
CTTAGATCTTTGACTCCTCC+TGG + chr8.2:24303887-24303906 None:intergenic 45.0%
GAAGGACCTTAAACCTCATG+TGG - chr8.2:24304056-24304075 MS.gene60163:CDS 45.0%
GAAGTAGAGGACACAGAAAC+TGG - chr8.2:24304363-24304382 MS.gene60163:CDS 45.0%
GAATGACAATGCAGAGACCA+AGG - chr8.2:24304299-24304318 MS.gene60163:CDS 45.0%
GGACACCACTAATGAAAACC+CGG - chr8.2:24305487-24305506 MS.gene60163:CDS 45.0%
TAGTGATGCGAAGGATCAAG+CGG - chr8.2:24304800-24304819 MS.gene60163:CDS 45.0%
TATGGAGCGAGCACAAAAAC+TGG - chr8.2:24304009-24304028 MS.gene60163:CDS 45.0%
TGAGGAAGATGTAGTAGTGG+TGG + chr8.2:24305429-24305448 None:intergenic 45.0%
! TGTTTAGGTTATCTCCCAGG+AGG - chr8.2:24303869-24303888 MS.gene60163:CDS 45.0%
! TTGTTCCGATGAGGTATCAG+AGG + chr8.2:24305612-24305631 None:intergenic 45.0%
!! AGAAACTGGAGAAAGTACCG+AGG - chr8.2:24304431-24304450 MS.gene60163:CDS 45.0%
AAGACACAAGGAAGACGAGG+AGG - chr8.2:24304101-24304120 MS.gene60163:CDS 50.0%
ACAATGCAGAGACCAAGGAG+AGG - chr8.2:24304304-24304323 MS.gene60163:CDS 50.0%
CAATGCAGAGACCAAGGAGA+GGG - chr8.2:24304305-24304324 MS.gene60163:CDS 50.0%
CCAAGGAAGTGAGAGTGAGA+AGG - chr8.2:24305142-24305161 MS.gene60163:CDS 50.0%
CCTTCGCATCACTACCATTC+TGG + chr8.2:24304794-24304813 None:intergenic 50.0%
CCTTCTCACTCTCACTTCCT+TGG + chr8.2:24305145-24305164 None:intergenic 50.0%
CTCTACACTTTCCCTCTCCT+TGG + chr8.2:24304319-24304338 None:intergenic 50.0%
CTCTCCTCCTTCTGTTCCAT+TGG + chr8.2:24304868-24304887 None:intergenic 50.0%
GAAGGGGGAGAGAAAGAAAC+CGG - chr8.2:24304684-24304703 MS.gene60163:CDS 50.0%
GAGACCAATGGAACAGAAGG+AGG - chr8.2:24304861-24304880 MS.gene60163:CDS 50.0%
GGACCTTAAACCTCATGTGG+AGG - chr8.2:24304059-24304078 MS.gene60163:CDS 50.0%
TAATGCCTCCAGTGCTGTAG+TGG - chr8.2:24304989-24305008 MS.gene60163:CDS 50.0%
TCGTGTGACGGTAGAAACAG+TGG + chr8.2:24305117-24305136 None:intergenic 50.0%
TGCAAGACACAAGGAAGACG+AGG - chr8.2:24304098-24304117 MS.gene60163:CDS 50.0%
! CCAGAATGGTAGTGATGCGA+AGG - chr8.2:24304791-24304810 MS.gene60163:CDS 50.0%
! GTTATCCACTACAGCACTGG+AGG + chr8.2:24304997-24305016 None:intergenic 50.0%
! TCCTTGGCTGTTTCGTGTGA+CGG + chr8.2:24305129-24305148 None:intergenic 50.0%
!! AGCACTGGAGGCATTATCTC+CGG + chr8.2:24304985-24305004 None:intergenic 50.0%
!! CGCGAGCAAAAAGCGTCTTA+TGG - chr8.2:24303991-24304010 MS.gene60163:CDS 50.0%
ACCGTCACACGAAACAGCCA+AGG - chr8.2:24305125-24305144 MS.gene60163:CDS 55.0%
GCGGAGACCAATGGAACAGA+AGG - chr8.2:24304858-24304877 MS.gene60163:CDS 55.0%
TGATGCGAAGGATCAAGCGG+AGG - chr8.2:24304803-24304822 MS.gene60163:CDS 55.0%
CAAGGGACGGCGGAGACCAA+TGG - chr8.2:24304849-24304868 MS.gene60163:CDS 65.0%


Chromosome Type Strat End Strand Name
chr8.2 gene 24303868 24305754 24303868 ID=MS.gene60163
chr8.2 mRNA 24303868 24305754 24303868 ID=MS.gene60163.t1;Parent=MS.gene60163
chr8.2 exon 24303868 24305754 24303868 ID=MS.gene60163.t1.exon1;Parent=MS.gene60163.t1
chr8.2 CDS 24303868 24305754 24303868 ID=cds.MS.gene60163.t1;Parent=MS.gene60163.t1
Gene Sequence

>MS.gene60163

ATGTTTAGGTTATCTCCCAGGAGGAGTCAAAGATCTAAGAACGGCTTCAAGGTGAAGCATGCTCTACAAATATGTGTTCTTGTTGGTGTTTGTGTTTGGTTAGTTTATCAAATTGGACATTCACGCGAGCAAAAAGCGTCTTATGGAGCGAGCACAAAAACTGGCAATGAAGTTGTTAAGTTAGGGAGGAAGGACCTTAAACCTCATGTGGAGGAAACTTCTGTTATAGATGCAAGACACAAGGAAGACGAGGAGGAAGCAGATGAACTAGACAATAAGCATGACGAGCAAACAAAATTGGATGATGTTAATGGTGTGGAAGATAATTCTGAGCATAAAGAGGATTCGGTAGAGCAAGAGAGTGAAGAGAGTTCTCAAAATGCTAAGACTGACTTGGAAGGTGAACAGCATACAGAGAAAGTTGATGAAGAGAATGACAATGCAGAGACCAAGGAGAGGGAAAGTGTAGAGAAAGAGAATGAGGAAATCAAAAAGGAAGTAGAGGACACAGAAACTGGAGAAAGTAATGAGGAAAAGAGTCATTTAGAAAATGAAGAGAACAAAGAAACTGGAGAAAGTACCGAGGAAAAGAGTCATCTAGAGAATGAAGAGAACAAAGATGAAGAAAAGAGTCAGCAAGAGAATGAAGAGAACAAAGATGGAGAAAAGATTCAGCAAGAGAATGAAGAGAACAAAGATGGAGAAAAGATTCAGCAAGAGAATGAAGAGAACAAAGATGAAGAAAAGAGTCAGCAAGAGAATGAAAAGATCAAAGATGGAGAAAAGATTCAGCAAGAGAATGAAGAGAAGAAAAATGAAGGGGGAGAGAAAGAAACCGGAGAAATTACAGAGGAAAAGAGTAAGCAAGAGAATGAAGAGACAAGTGAGACAAAGAGTAACGATAAGGAGAATGAAGAAAGCAACCAGAATGGTAGTGATGCGAAGGATCAAGCGGAGGAAAACCATGAGCAAGATAGTAAACAAGGGACGGCGGAGACCAATGGAACAGAAGGAGGAGAGAAAGAAGGGCATGATAAGATTCAGGAAGAGACTTCATCTGATAATCAGGTTCAGGATGGTGAAAAGAACAATGAGGCTAGGGAGGAAAATTATTCCGGAGATAATGCCTCCAGTGCTGTAGTGGATAACAAATCACAAGAAAGTTCTAACAAGACAGAAGAACAATTTGACAAAAAGGAAAAGAATGAGTTTGAGTCTCAGAAAAATAGTGATGAAACTACTGAATCCACTGTTTCTACCGTCACACGAAACAGCCAAGGAAGTGAGAGTGAGAAGGATCAGGCACAGACAGAAAATGATTCACAGAAGGGTTCTGCATCAGAGTCAGATGAACAGAAGCAAGAGCAAGAGCAGAATAACATCACCAAGGATGATGTACAAACTCCGAATACATCATCGCAGAATGGGAATGACACAGCTGAAAAACAGAATGAAAAATCTGAAGATGCAAACTCAAAGAAAGAGGACTCTAGCGCGCAAAATACAACGCCAAACAATGAAGATTCTAAATCAGATGTTGCTGGAGATCAGGCTGATTCCACCACTACTACATCTTCCTCAGAAACTCAAGATGGCAATACAAATCATGGTGAATACAAGGACACCACTAATGAAAACCCGGAAAAGAATTCTGGTCAAGAAGGAACACAAGAAAGTGGTTCATCATCCAACACATTTGACAACAAAGATGCTACTAGCAACGAGGTTAAACTAACTACTACCTCTGATACCTCATCGGAACAAAAGAAAGATGAATCCTCGAGTGCAGAAAGTAATTCTGAATCTTCACCGAATGACAATGCAAACTCGGGTCAAAGCAACACAACCAGTGATGAAAGTGCTAATGACAACAAAGATTCTAGCCAG

Protein sequence

>MS.gene60163.t1

MFRLSPRRSQRSKNGFKVKHALQICVLVGVCVWLVYQIGHSREQKASYGASTKTGNEVVKLGRKDLKPHVEETSVIDARHKEDEEEADELDNKHDEQTKLDDVNGVEDNSEHKEDSVEQESEESSQNAKTDLEGEQHTEKVDEENDNAETKERESVEKENEEIKKEVEDTETGESNEEKSHLENEENKETGESTEEKSHLENEENKDEEKSQQENEENKDGEKIQQENEENKDGEKIQQENEENKDEEKSQQENEKIKDGEKIQQENEEKKNEGGEKETGEITEEKSKQENEETSETKSNDKENEESNQNGSDAKDQAEENHEQDSKQGTAETNGTEGGEKEGHDKIQEETSSDNQVQDGEKNNEAREENYSGDNASSAVVDNKSQESSNKTEEQFDKKEKNEFESQKNSDETTESTVSTVTRNSQGSESEKDQAQTENDSQKGSASESDEQKQEQEQNNITKDDVQTPNTSSQNGNDTAEKQNEKSEDANSKKEDSSAQNTTPNNEDSKSDVAGDQADSTTTTSSSETQDGNTNHGEYKDTTNENPEKNSGQEGTQESGSSSNTFDNKDATSNEVKLTTTSDTSSEQKKDESSSAESNSESSPNDNANSGQSNTTSDESANDNKDSSQ