Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene066436.t1 | KEH44517.1 | 87.3 | 126 | 16 | 0 | 10 | 135 | 334 | 459 | 2.50E-49 | 204.9 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene066436.t1 | A0A072W2Q0 | 87.3 | 126 | 16 | 0 | 10 | 135 | 162 | 287 | 1.8e-49 | 204.9 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene049142 | MS.gene066436 | 0.864128 | 1.52E-64 | -1.69E-46 |
MS.gene049159 | MS.gene066436 | 0.870429 | 1.47E-66 | -1.69E-46 |
MS.gene049254 | MS.gene066436 | 0.829276 | 5.64E-55 | -1.69E-46 |
MS.gene049404 | MS.gene066436 | 0.81536 | 9.62E-52 | -1.69E-46 |
MS.gene049435 | MS.gene066436 | 0.83877 | 2.36E-57 | -1.69E-46 |
MS.gene049452 | MS.gene066436 | 0.814469 | 1.52E-51 | -1.69E-46 |
MS.gene049501 | MS.gene066436 | 0.841591 | 4.33E-58 | -1.69E-46 |
MS.gene049567 | MS.gene066436 | 0.804474 | 2.12E-49 | -1.69E-46 |
MS.gene049585 | MS.gene066436 | 0.817946 | 2.53E-52 | -1.69E-46 |
MS.gene049647 | MS.gene066436 | 0.819171 | 1.34E-52 | -1.69E-46 |
MS.gene049711 | MS.gene066436 | 0.802535 | 5.36E-49 | -1.69E-46 |
MS.gene049850 | MS.gene066436 | 0.835724 | 1.42E-56 | -1.69E-46 |
MS.gene050026 | MS.gene066436 | 0.805193 | 1.50E-49 | -1.69E-46 |
MS.gene050226 | MS.gene066436 | 0.804687 | 1.92E-49 | -1.69E-46 |
MS.gene050227 | MS.gene066436 | 0.808281 | 3.34E-50 | -1.69E-46 |
MS.gene050228 | MS.gene066436 | 0.80303 | 4.23E-49 | -1.69E-46 |
MS.gene050237 | MS.gene066436 | 0.800723 | 1.26E-48 | -1.69E-46 |
MS.gene050273 | MS.gene066436 | 0.813961 | 1.96E-51 | -1.69E-46 |
MS.gene050442 | MS.gene066436 | 0.842818 | 2.05E-58 | -1.69E-46 |
MS.gene050559 | MS.gene066436 | 0.811731 | 6.05E-51 | -1.69E-46 |
MS.gene050561 | MS.gene066436 | 0.821067 | 4.92E-53 | -1.69E-46 |
MS.gene050562 | MS.gene066436 | 0.814877 | 1.23E-51 | -1.69E-46 |
MS.gene050657 | MS.gene066436 | 0.80568 | 1.19E-49 | -1.69E-46 |
MS.gene050719 | MS.gene066436 | 0.83204 | 1.19E-55 | -1.69E-46 |
MS.gene050721 | MS.gene066436 | 0.832546 | 8.89E-56 | -1.69E-46 |
MS.gene050724 | MS.gene066436 | 0.842547 | 2.42E-58 | -1.69E-46 |
MS.gene050759 | MS.gene066436 | 0.846266 | 2.42E-59 | -1.69E-46 |
MS.gene050780 | MS.gene066436 | 0.819924 | 9.00E-53 | -1.69E-46 |
MS.gene050807 | MS.gene066436 | 0.810175 | 1.31E-50 | -1.69E-46 |
MS.gene050826 | MS.gene066436 | 0.81486 | 1.24E-51 | -1.69E-46 |
MS.gene050844 | MS.gene066436 | 0.830625 | 2.64E-55 | -1.69E-46 |
MS.gene050962 | MS.gene066436 | 0.836775 | 7.68E-57 | -1.69E-46 |
MS.gene051102 | MS.gene066436 | 0.815908 | 7.27E-52 | -1.69E-46 |
MS.gene051147 | MS.gene066436 | 0.806412 | 8.33E-50 | -1.69E-46 |
MS.gene051180 | MS.gene066436 | 0.814212 | 1.73E-51 | -1.69E-46 |
MS.gene051198 | MS.gene066436 | 0.838422 | 2.90E-57 | -1.69E-46 |
MS.gene051210 | MS.gene066436 | 0.814021 | 1.90E-51 | -1.69E-46 |
MS.gene051247 | MS.gene066436 | 0.845896 | 3.05E-59 | -1.69E-46 |
MS.gene051265 | MS.gene066436 | 0.828668 | 7.91E-55 | -1.69E-46 |
MS.gene051279 | MS.gene066436 | 0.83318 | 6.18E-56 | -1.69E-46 |
MS.gene051388 | MS.gene066436 | 0.805809 | 1.12E-49 | -1.69E-46 |
MS.gene051490 | MS.gene066436 | 0.803356 | 3.63E-49 | -1.69E-46 |
MS.gene05157 | MS.gene066436 | 0.824457 | 7.99E-54 | -1.69E-46 |
MS.gene051710 | MS.gene066436 | 0.810859 | 9.35E-51 | -1.69E-46 |
MS.gene051719 | MS.gene066436 | 0.832502 | 9.11E-56 | -1.69E-46 |
MS.gene051720 | MS.gene066436 | 0.821884 | 3.18E-53 | -1.69E-46 |
MS.gene051744 | MS.gene066436 | 0.864857 | 8.99E-65 | -1.69E-46 |
MS.gene051800 | MS.gene066436 | 0.833913 | 4.06E-56 | -1.69E-46 |
MS.gene052012 | MS.gene066436 | 0.808872 | 2.50E-50 | -1.69E-46 |
MS.gene052020 | MS.gene066436 | 0.857205 | 1.91E-62 | -1.69E-46 |
MS.gene052037 | MS.gene066436 | 0.800156 | 1.65E-48 | -1.69E-46 |
MS.gene05215 | MS.gene066436 | 0.817086 | 3.96E-52 | -1.69E-46 |
MS.gene052208 | MS.gene066436 | 0.808028 | 3.79E-50 | -1.69E-46 |
MS.gene052323 | MS.gene066436 | 0.829142 | 6.07E-55 | -1.69E-46 |
MS.gene052459 | MS.gene066436 | 0.80431 | 2.30E-49 | -1.69E-46 |
MS.gene052463 | MS.gene066436 | 0.811085 | 8.35E-51 | -1.69E-46 |
MS.gene052516 | MS.gene066436 | 0.834177 | 3.48E-56 | -1.69E-46 |
MS.gene052519 | MS.gene066436 | 0.831647 | 1.48E-55 | -1.69E-46 |
MS.gene052561 | MS.gene066436 | 0.804288 | 2.32E-49 | -1.69E-46 |
MS.gene052582 | MS.gene066436 | 0.828665 | 7.92E-55 | -1.69E-46 |
MS.gene052584 | MS.gene066436 | 0.828938 | 6.81E-55 | -1.69E-46 |
MS.gene052609 | MS.gene066436 | 0.810999 | 8.72E-51 | -1.69E-46 |
MS.gene052611 | MS.gene066436 | 0.839663 | 1.39E-57 | -1.69E-46 |
MS.gene052612 | MS.gene066436 | 0.805548 | 1.27E-49 | -1.69E-46 |
MS.gene052665 | MS.gene066436 | 0.808615 | 2.84E-50 | -1.69E-46 |
MS.gene052773 | MS.gene066436 | 0.831328 | 1.78E-55 | -1.69E-46 |
MS.gene052863 | MS.gene066436 | 0.84119 | 5.52E-58 | -1.69E-46 |
MS.gene052896 | MS.gene066436 | 0.850086 | 2.13E-60 | -1.69E-46 |
MS.gene053008 | MS.gene066436 | 0.831219 | 1.89E-55 | -1.69E-46 |
MS.gene053079 | MS.gene066436 | 0.837895 | 3.97E-57 | -1.69E-46 |
MS.gene053144 | MS.gene066436 | 0.818304 | 2.10E-52 | -1.69E-46 |
MS.gene053164 | MS.gene066436 | 0.827833 | 1.26E-54 | -1.69E-46 |
MS.gene053166 | MS.gene066436 | 0.805518 | 1.28E-49 | -1.69E-46 |
MS.gene053226 | MS.gene066436 | 0.854304 | 1.35E-61 | -1.69E-46 |
MS.gene053621 | MS.gene066436 | 0.817382 | 3.39E-52 | -1.69E-46 |
MS.gene053647 | MS.gene066436 | 0.811019 | 8.63E-51 | -1.69E-46 |
MS.gene053966 | MS.gene066436 | 0.803438 | 3.49E-49 | -1.69E-46 |
MS.gene053998 | MS.gene066436 | 0.812661 | 3.79E-51 | -1.69E-46 |
MS.gene05414 | MS.gene066436 | 0.832883 | 7.33E-56 | -1.69E-46 |
MS.gene05415 | MS.gene066436 | 0.837974 | 3.79E-57 | -1.69E-46 |
MS.gene05417 | MS.gene066436 | 0.830716 | 2.51E-55 | -1.69E-46 |
MS.gene054236 | MS.gene066436 | 0.853629 | 2.11E-61 | -1.69E-46 |
MS.gene05423 | MS.gene066436 | 0.825477 | 4.59E-54 | -1.69E-46 |
MS.gene054291 | MS.gene066436 | -0.811593 | 6.48E-51 | -1.69E-46 |
MS.gene054467 | MS.gene066436 | 0.83893 | 2.15E-57 | -1.69E-46 |
MS.gene054468 | MS.gene066436 | 0.809925 | 1.49E-50 | -1.69E-46 |
MS.gene054472 | MS.gene066436 | 0.814434 | 1.54E-51 | -1.69E-46 |
MS.gene054576 | MS.gene066436 | 0.817775 | 2.77E-52 | -1.69E-46 |
MS.gene054584 | MS.gene066436 | 0.822546 | 2.24E-53 | -1.69E-46 |
MS.gene05458 | MS.gene066436 | 0.80287 | 4.57E-49 | -1.69E-46 |
MS.gene05462 | MS.gene066436 | 0.802808 | 4.71E-49 | -1.69E-46 |
MS.gene054651 | MS.gene066436 | 0.848963 | 4.38E-60 | -1.69E-46 |
MS.gene05468 | MS.gene066436 | 0.828864 | 7.09E-55 | -1.69E-46 |
MS.gene054775 | MS.gene066436 | 0.831854 | 1.32E-55 | -1.69E-46 |
MS.gene054801 | MS.gene066436 | 0.828958 | 6.73E-55 | -1.69E-46 |
MS.gene055222 | MS.gene066436 | 0.802001 | 6.90E-49 | -1.69E-46 |
MS.gene055227 | MS.gene066436 | 0.847578 | 1.06E-59 | -1.69E-46 |
MS.gene055228 | MS.gene066436 | 0.817594 | 3.04E-52 | -1.69E-46 |
MS.gene055310 | MS.gene066436 | 0.806692 | 7.27E-50 | -1.69E-46 |
MS.gene055465 | MS.gene066436 | 0.830063 | 3.63E-55 | -1.69E-46 |
MS.gene055466 | MS.gene066436 | 0.834119 | 3.60E-56 | -1.69E-46 |
MS.gene055468 | MS.gene066436 | 0.803994 | 2.67E-49 | -1.69E-46 |
MS.gene055469 | MS.gene066436 | 0.811172 | 8.00E-51 | -1.69E-46 |
MS.gene055513 | MS.gene066436 | 0.818296 | 2.11E-52 | -1.69E-46 |
MS.gene055586 | MS.gene066436 | 0.812555 | 4.00E-51 | -1.69E-46 |
MS.gene055589 | MS.gene066436 | 0.818595 | 1.81E-52 | -1.69E-46 |
MS.gene055608 | MS.gene066436 | 0.804232 | 2.38E-49 | -1.69E-46 |
MS.gene055623 | MS.gene066436 | 0.826271 | 2.97E-54 | -1.69E-46 |
MS.gene055778 | MS.gene066436 | 0.841176 | 5.57E-58 | -1.69E-46 |
MS.gene055818 | MS.gene066436 | 0.854381 | 1.28E-61 | -1.69E-46 |
MS.gene055864 | MS.gene066436 | 0.808906 | 2.46E-50 | -1.69E-46 |
MS.gene055875 | MS.gene066436 | 0.815513 | 8.90E-52 | -1.69E-46 |
MS.gene055926 | MS.gene066436 | 0.854585 | 1.12E-61 | -1.69E-46 |
MS.gene05604 | MS.gene066436 | 0.835543 | 1.58E-56 | -1.69E-46 |
MS.gene056050 | MS.gene066436 | 0.813417 | 2.59E-51 | -1.69E-46 |
MS.gene056173 | MS.gene066436 | 0.835196 | 1.93E-56 | -1.69E-46 |
MS.gene056174 | MS.gene066436 | 0.847838 | 8.98E-60 | -1.69E-46 |
MS.gene056308 | MS.gene066436 | 0.834431 | 3.01E-56 | -1.69E-46 |
MS.gene056366 | MS.gene066436 | 0.817299 | 3.54E-52 | -1.69E-46 |
MS.gene056506 | MS.gene066436 | 0.831381 | 1.72E-55 | -1.69E-46 |
MS.gene056507 | MS.gene066436 | 0.832839 | 7.52E-56 | -1.69E-46 |
MS.gene056553 | MS.gene066436 | 0.838476 | 2.81E-57 | -1.69E-46 |
MS.gene05686 | MS.gene066436 | 0.818541 | 1.86E-52 | -1.69E-46 |
MS.gene05690 | MS.gene066436 | 0.807038 | 6.14E-50 | -1.69E-46 |
MS.gene057026 | MS.gene066436 | 0.813584 | 2.38E-51 | -1.69E-46 |
MS.gene057034 | MS.gene066436 | 0.807857 | 4.12E-50 | -1.69E-46 |
MS.gene057314 | MS.gene066436 | 0.810206 | 1.29E-50 | -1.69E-46 |
MS.gene057414 | MS.gene066436 | 0.801775 | 7.68E-49 | -1.69E-46 |
MS.gene057444 | MS.gene066436 | 0.844353 | 7.97E-59 | -1.69E-46 |
MS.gene057446 | MS.gene066436 | 0.81303 | 3.15E-51 | -1.69E-46 |
MS.gene057693 | MS.gene066436 | 0.806001 | 1.02E-49 | -1.69E-46 |
MS.gene057855 | MS.gene066436 | 0.806012 | 1.01E-49 | -1.69E-46 |
MS.gene057869 | MS.gene066436 | 0.861835 | 7.76E-64 | -1.69E-46 |
MS.gene057915 | MS.gene066436 | 0.87143 | 6.88E-67 | -1.69E-46 |
MS.gene058010 | MS.gene066436 | 0.859359 | 4.37E-63 | -1.69E-46 |
MS.gene058037 | MS.gene066436 | 0.819909 | 9.07E-53 | -1.69E-46 |
MS.gene058289 | MS.gene066436 | 0.803051 | 4.19E-49 | -1.69E-46 |
MS.gene058515 | MS.gene066436 | 0.806942 | 6.44E-50 | -1.69E-46 |
MS.gene058548 | MS.gene066436 | 0.803632 | 3.18E-49 | -1.69E-46 |
MS.gene058625 | MS.gene066436 | 0.83594 | 1.25E-56 | -1.69E-46 |
MS.gene058829 | MS.gene066436 | 0.80959 | 1.76E-50 | -1.69E-46 |
MS.gene058919 | MS.gene066436 | 0.812718 | 3.68E-51 | -1.69E-46 |
MS.gene058979 | MS.gene066436 | 0.85822 | 9.56E-63 | -1.69E-46 |
MS.gene059272 | MS.gene066436 | 0.812951 | 3.27E-51 | -1.69E-46 |
MS.gene059283 | MS.gene066436 | 0.825552 | 4.40E-54 | -1.69E-46 |
MS.gene059331 | MS.gene066436 | 0.803459 | 3.45E-49 | -1.69E-46 |
MS.gene059439 | MS.gene066436 | 0.813914 | 2.01E-51 | -1.69E-46 |
MS.gene059570 | MS.gene066436 | 0.831237 | 1.87E-55 | -1.69E-46 |
MS.gene059625 | MS.gene066436 | 0.829704 | 4.44E-55 | -1.69E-46 |
MS.gene059713 | MS.gene066436 | 0.830283 | 3.20E-55 | -1.69E-46 |
MS.gene059725 | MS.gene066436 | 0.827818 | 1.27E-54 | -1.69E-46 |
MS.gene05973 | MS.gene066436 | 0.812179 | 4.83E-51 | -1.69E-46 |
MS.gene059842 | MS.gene066436 | 0.829915 | 3.94E-55 | -1.69E-46 |
MS.gene059937 | MS.gene066436 | 0.80563 | 1.22E-49 | -1.69E-46 |
MS.gene060011 | MS.gene066436 | 0.8405 | 8.38E-58 | -1.69E-46 |
MS.gene060137 | MS.gene066436 | -0.808813 | 2.58E-50 | -1.69E-46 |
MS.gene060167 | MS.gene066436 | 0.860986 | 1.41E-63 | -1.69E-46 |
MS.gene060310 | MS.gene066436 | 0.832635 | 8.45E-56 | -1.69E-46 |
MS.gene060312 | MS.gene066436 | 0.831401 | 1.70E-55 | -1.69E-46 |
MS.gene060322 | MS.gene066436 | 0.844922 | 5.60E-59 | -1.69E-46 |
MS.gene060373 | MS.gene066436 | 0.832989 | 6.90E-56 | -1.69E-46 |
MS.gene06052 | MS.gene066436 | 0.85366 | 2.06E-61 | -1.69E-46 |
MS.gene060587 | MS.gene066436 | 0.808525 | 2.97E-50 | -1.69E-46 |
MS.gene060637 | MS.gene066436 | 0.821979 | 3.03E-53 | -1.69E-46 |
MS.gene060683 | MS.gene066436 | 0.812679 | 3.75E-51 | -1.69E-46 |
MS.gene060685 | MS.gene066436 | 0.81424 | 1.70E-51 | -1.69E-46 |
MS.gene060802 | MS.gene066436 | 0.824584 | 7.46E-54 | -1.69E-46 |
MS.gene060803 | MS.gene066436 | 0.827225 | 1.76E-54 | -1.69E-46 |
MS.gene060919 | MS.gene066436 | 0.801938 | 7.11E-49 | -1.69E-46 |
MS.gene060998 | MS.gene066436 | 0.839876 | 1.22E-57 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene066436.t1 | MTR_1g115610 | 96.748 | 123 | 4 | 0 | 10 | 132 | 334 | 456 | 3.93e-78 | 239 |
MS.gene066436.t1 | MTR_1g115610 | 96.748 | 123 | 4 | 0 | 10 | 132 | 162 | 284 | 5.52e-78 | 239 |
MS.gene066436.t1 | MTR_1g115610 | 96.748 | 123 | 4 | 0 | 10 | 132 | 334 | 456 | 6.33e-78 | 239 |
MS.gene066436.t1 | MTR_1g115610 | 96.748 | 123 | 4 | 0 | 10 | 132 | 406 | 528 | 3.68e-77 | 239 |
MS.gene066436.t1 | MTR_1g115610 | 96.748 | 123 | 4 | 0 | 10 | 132 | 272 | 394 | 9.11e-77 | 239 |
MS.gene066436.t1 | MTR_1g115610 | 96.748 | 123 | 4 | 0 | 10 | 132 | 334 | 456 | 2.77e-76 | 239 |
MS.gene066436.t1 | MTR_1g067400 | 50.400 | 125 | 62 | 0 | 11 | 135 | 330 | 454 | 1.54e-27 | 107 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene066436.t1 | AT5G13560 | 66.116 | 121 | 41 | 0 | 11 | 131 | 329 | 449 | 5.83e-48 | 164 |
MS.gene066436.t1 | AT2G37370 | 53.788 | 132 | 55 | 1 | 11 | 136 | 329 | 460 | 1.29e-39 | 139 |
MS.gene066436.t1 | AT2G37370 | 53.788 | 132 | 55 | 1 | 11 | 136 | 329 | 460 | 4.06e-39 | 139 |
MS.gene066436.t1 | AT2G37370 | 53.788 | 132 | 55 | 1 | 11 | 136 | 329 | 460 | 4.06e-39 | 139 |
MS.gene066436.t1 | AT2G37370 | 53.788 | 132 | 55 | 1 | 11 | 136 | 329 | 460 | 4.06e-39 | 139 |
Find 30 sgRNAs with CRISPR-Local
Find 150 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CAAAACGTGGATCAACTTTC+TGG | 0.265233 | 1.2:-85756340 | MS.gene066436:CDS |
CATGTTTATTCTGCTGAATC+AGG | 0.285111 | 1.2:+85756110 | None:intergenic |
GTTGTAGGTTAATACTTCTT+TGG | 0.286653 | 1.2:-85756618 | MS.gene066436:intron |
TCTTGAAGCTGAACTGAAAA+AGG | 0.292038 | 1.2:-85757713 | MS.gene066436:intron |
GACCCTGCACGGTTGGTTCC+TGG | 0.320861 | 1.2:+85758700 | None:intergenic |
TCAACTTTCTGGAAGATACT+TGG | 0.382032 | 1.2:-85756329 | MS.gene066436:CDS |
AAATTTCTGTATTTGACTGC+TGG | 0.391944 | 1.2:+85756301 | None:intergenic |
AGTTGAGCATCTGAAGATAA+AGG | 0.396507 | 1.2:-85756525 | MS.gene066436:intron |
GATTGTTTGCTTCCTCAAAC+TGG | 0.403188 | 1.2:+85756552 | None:intergenic |
TTCTGCTGAATCAGGTCTAT+CGG | 0.407342 | 1.2:+85756118 | None:intergenic |
TACAGAAATTTATGAGAAGC+AGG | 0.470345 | 1.2:-85756289 | MS.gene066436:CDS |
GTGACTAAAGGTGGTGAAAC+TGG | 0.471373 | 1.2:-85758569 | MS.gene066436:CDS |
CAGGTCTATCGGGTGGACTA+TGG | 0.480802 | 1.2:+85756129 | None:intergenic |
AAATTTATGAGAAGCAGGTC+AGG | 0.484747 | 1.2:-85756284 | MS.gene066436:intron |
CAACTTTCTGGAAGATACTT+GGG | 0.487980 | 1.2:-85756328 | MS.gene066436:CDS |
TTAAAAGTTCGCGTGACTAA+AGG | 0.500180 | 1.2:-85758581 | MS.gene066436:CDS |
AGGTGGTGAAACTGGTGAAA+AGG | 0.507701 | 1.2:-85758561 | MS.gene066436:CDS |
AAAATAAGACCCTGCACGGT+TGG | 0.507744 | 1.2:+85758693 | None:intergenic |
TCTGCTGAATCAGGTCTATC+GGG | 0.510184 | 1.2:+85756119 | None:intergenic |
AAACCAGGAACCAACCGTGC+AGG | 0.515988 | 1.2:-85758703 | MS.gene066436:CDS |
CTGCTGCTCAAGCACGATTG+TGG | 0.526248 | 1.2:-85756595 | MS.gene066436:CDS |
GGAAGAGAGAGACCAGTTTG+AGG | 0.527497 | 1.2:-85756564 | MS.gene066436:CDS |
AGCACGATTGTGGAACGTGA+GGG | 0.577368 | 1.2:-85756585 | MS.gene066436:CDS |
AACCAGGAACCAACCGTGCA+GGG | 0.583086 | 1.2:-85758702 | MS.gene066436:intron |
CAGCTTATGTAGATGAAACC+AGG | 0.585731 | 1.2:-85758718 | None:intergenic |
AAAGTTCGCGTGACTAAAGG+TGG | 0.602456 | 1.2:-85758578 | MS.gene066436:CDS |
GCTGAATCAGGTCTATCGGG+TGG | 0.619970 | 1.2:+85756122 | None:intergenic |
AAGCACGATTGTGGAACGTG+AGG | 0.636747 | 1.2:-85756586 | MS.gene066436:CDS |
TGAAACTGGTGAAAAGGAGA+AGG | 0.639219 | 1.2:-85758555 | MS.gene066436:intron |
AATCAGATGTCATCAAAACG+TGG | 0.712961 | 1.2:-85756353 | MS.gene066436:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | AATACTTTTAAATTAAAAGA+AGG | + | chr1.2:85757553-85757572 | None:intergenic | 10.0% |
!!! | TAAGTTTTTAAATTTCAAAT+AGG | + | chr1.2:85757382-85757401 | None:intergenic | 10.0% |
!! | AAACTTAAAAAACTTCAAAT+AGG | - | chr1.2:85757395-85757414 | MS.gene066436:intron | 15.0% |
!! | TGAAACTTAAAAAAACTTAA+AGG | - | chr1.2:85757449-85757468 | MS.gene066436:intron | 15.0% |
!! | TTACTAGTATTTATTACATT+AGG | - | chr1.2:85758664-85758683 | MS.gene066436:intron | 15.0% |
!! | TTTATTAGATACACAAAATT+AGG | - | chr1.2:85758640-85758659 | MS.gene066436:intron | 15.0% |
!!! | ATTTTCCTTAATTTAATCAA+CGG | - | chr1.2:85756690-85756709 | MS.gene066436:intron | 15.0% |
!!! | TTTGAAATTATCTTTTTTCT+TGG | - | chr1.2:85758319-85758338 | MS.gene066436:intron | 15.0% |
!! | AAAATTTGAACCAATTGAAA+GGG | + | chr1.2:85756931-85756950 | None:intergenic | 20.0% |
!! | AAGGAGAAAATTACAAATTT+AGG | + | chr1.2:85756582-85756601 | None:intergenic | 20.0% |
!! | AGAAGAAAACAAAAATCAAT+TGG | + | chr1.2:85757028-85757047 | None:intergenic | 20.0% |
!! | ATATAAAGAGAAAAAAGCAA+TGG | + | chr1.2:85757619-85757638 | None:intergenic | 20.0% |
!! | TACAACTCAAATTTAAACTT+TGG | + | chr1.2:85758189-85758208 | None:intergenic | 20.0% |
!! | TCAAATCAAAATATCAAACT+GGG | + | chr1.2:85758395-85758414 | None:intergenic | 20.0% |
!! | TTGAAACTTAAAAAACGTAA+AGG | - | chr1.2:85757478-85757497 | MS.gene066436:intron | 20.0% |
!!! | AAAGTTTAAATTTGAGTTGT+AGG | - | chr1.2:85758188-85758207 | MS.gene066436:intron | 20.0% |
!!! | AAATTTGTAATTTTCTCCTT+TGG | - | chr1.2:85756582-85756601 | MS.gene066436:CDS | 20.0% |
!!! | ACGTTTTTTAAGTTTCAAAT+AGG | + | chr1.2:85757476-85757495 | None:intergenic | 20.0% |
!!! | CTAAACATGTTATTCTTTTA+AGG | - | chr1.2:85757278-85757297 | MS.gene066436:intron | 20.0% |
!!! | TATATTTTTGTCAGACTTAA+AGG | + | chr1.2:85757322-85757341 | None:intergenic | 20.0% |
!!! | TTTCAATTGGTTCAAATTTT+CGG | - | chr1.2:85756931-85756950 | MS.gene066436:intron | 20.0% |
! | AAACTTTAACTCATGAAAAG+TGG | + | chr1.2:85758146-85758165 | None:intergenic | 25.0% |
! | AAATTAACCCTATCAACTAT+TGG | - | chr1.2:85757785-85757804 | MS.gene066436:intron | 25.0% |
! | AAGTGGTTAAATATTGTGAT+TGG | + | chr1.2:85758129-85758148 | None:intergenic | 25.0% |
! | AAGTTATTACACACAGATTA+AGG | - | chr1.2:85757724-85757743 | MS.gene066436:CDS | 25.0% |
! | AGTGAAATTACTATTACTGA+AGG | + | chr1.2:85757249-85757268 | None:intergenic | 25.0% |
! | AGTGTACTAGTAATAATTAG+AGG | - | chr1.2:85757858-85757877 | MS.gene066436:intron | 25.0% |
! | ATCTTGTACAAACTATATCA+CGG | + | chr1.2:85756785-85756804 | None:intergenic | 25.0% |
! | ATTTCAAATAGGTCCTTAAA+AGG | + | chr1.2:85757371-85757390 | None:intergenic | 25.0% |
! | CAGTTTCTTCATAAAGAAAA+TGG | + | chr1.2:85757140-85757159 | None:intergenic | 25.0% |
! | GAAAATTTGAACCAATTGAA+AGG | + | chr1.2:85756932-85756951 | None:intergenic | 25.0% |
! | GCATCAAATTAACAACTTAA+AGG | - | chr1.2:85757419-85757438 | MS.gene066436:intron | 25.0% |
! | GTCAAATCAAAATATCAAAC+TGG | + | chr1.2:85758396-85758415 | None:intergenic | 25.0% |
! | GTGTACTAGTAATAATTAGA+GGG | - | chr1.2:85757859-85757878 | MS.gene066436:intron | 25.0% |
! | TAATAGTAATTTCACTCTTC+TGG | - | chr1.2:85757253-85757272 | MS.gene066436:intron | 25.0% |
! | TTTCAAATAGGTCCTTAAAA+GGG | + | chr1.2:85757370-85757389 | None:intergenic | 25.0% |
! | TTTCTTTATGAAGAAACTGT+TGG | - | chr1.2:85757141-85757160 | MS.gene066436:intron | 25.0% |
!! | AAATGAGGGTTTAATTTAAG+AGG | - | chr1.2:85756495-85756514 | MS.gene066436:intron | 25.0% |
!! | AGAAGGCTAAATACTTATTT+TGG | + | chr1.2:85757536-85757555 | None:intergenic | 25.0% |
!! | ATTACAGATTCTACAGATTT+TGG | - | chr1.2:85757190-85757209 | MS.gene066436:intron | 25.0% |
!! | ATTCTCCGTTGATTAAATTA+AGG | + | chr1.2:85756698-85756717 | None:intergenic | 25.0% |
!!! | CAAGATTATCTTTTTTCTGT+TGG | + | chr1.2:85757093-85757112 | None:intergenic | 25.0% |
!!! | GAAATTATCTTTTTTCTTGG+CGG | - | chr1.2:85758322-85758341 | MS.gene066436:intron | 25.0% |
!!! | GGTATTTTTGTCAAACTTAA+AGG | - | chr1.2:85757509-85757528 | MS.gene066436:intron | 25.0% |
!!! | TTCAATTGGTTCAAATTTTC+GGG | - | chr1.2:85756932-85756951 | MS.gene066436:intron | 25.0% |
AAAAACGTAAAGGACTAACT+CGG | - | chr1.2:85757488-85757507 | MS.gene066436:intron | 30.0% | |
AAAGTAGAAGATAGTGCTTT+GGG | - | chr1.2:85757832-85757851 | MS.gene066436:intron | 30.0% | |
AAATTTCTGTATTTGACTGC+TGG | + | chr1.2:85758523-85758542 | None:intergenic | 30.0% | |
AATCAAAATATCAAACTGGG+CGG | + | chr1.2:85758392-85758411 | None:intergenic | 30.0% | |
ACCAAATAAGTTGTTACCTA+CGG | - | chr1.2:85758072-85758091 | MS.gene066436:intron | 30.0% | |
AGAAGACATGATTTAGTGTT+TGG | + | chr1.2:85756181-85756200 | None:intergenic | 30.0% | |
ATACCTTTATCCCTTTCAAT+TGG | - | chr1.2:85756918-85756937 | MS.gene066436:intron | 30.0% | |
ATTTGACAGACAACAAAAAG+AGG | - | chr1.2:85756212-85756231 | MS.gene066436:intron | 30.0% | |
GAAAATGCTCAATATTACGA+AGG | + | chr1.2:85756676-85756695 | None:intergenic | 30.0% | |
GAACACTGTATTGAAAATGA+GGG | - | chr1.2:85756481-85756500 | MS.gene066436:intron | 30.0% | |
GTTATGTTATACCGTATGAA+TGG | - | chr1.2:85756521-85756540 | MS.gene066436:intron | 30.0% | |
GTTGTAGGTTAATACTTCTT+TGG | - | chr1.2:85758203-85758222 | MS.gene066436:intron | 30.0% | |
TAAACAAACATGTTCCTGTA+AGG | + | chr1.2:85756731-85756750 | None:intergenic | 30.0% | |
TAAAGTAGAAGATAGTGCTT+TGG | - | chr1.2:85757831-85757850 | MS.gene066436:intron | 30.0% | |
TACAGAAATTTATGAGAAGC+AGG | - | chr1.2:85758532-85758551 | MS.gene066436:intron | 30.0% | |
TACTATTACTGAAGGATTAG+AGG | + | chr1.2:85757241-85757260 | None:intergenic | 30.0% | |
TATGTCAACTTTGTGTTCAT+AGG | - | chr1.2:85756992-85757011 | MS.gene066436:intron | 30.0% | |
TGAACACTGTATTGAAAATG+AGG | - | chr1.2:85756480-85756499 | MS.gene066436:intron | 30.0% | |
! | ATACACACCAATAGTTGATA+GGG | + | chr1.2:85757795-85757814 | None:intergenic | 30.0% |
! | GTGATATAGTTTGTACAAGA+TGG | - | chr1.2:85756784-85756803 | MS.gene066436:intron | 30.0% |
! | TCTTTTATCCATCACTTCAA+CGG | - | chr1.2:85756454-85756473 | MS.gene066436:intron | 30.0% |
!! | TAACGACACTCATTTTGAAA+CGG | + | chr1.2:85757704-85757723 | None:intergenic | 30.0% |
!! | TCAATTGGTTCAAATTTTCG+GGG | - | chr1.2:85756933-85756952 | MS.gene066436:intron | 30.0% |
!! | TGTGGATTTTGACAATTACA+GGG | + | chr1.2:85756620-85756639 | None:intergenic | 30.0% |
AAAAAGAACACCCAAGTGAT+GGG | + | chr1.2:85756837-85756856 | None:intergenic | 35.0% | |
AAACGACACTCGTTATGAAA+CGG | - | chr1.2:85757959-85757978 | MS.gene066436:intron | 35.0% | |
AAATTTATGAGAAGCAGGTC+AGG | - | chr1.2:85758537-85758556 | MS.gene066436:intron | 35.0% | |
AAGAAAAATAAGACCCTGCA+CGG | + | chr1.2:85756135-85756154 | None:intergenic | 35.0% | |
AAGCAATGGAACAGAATCAA+AGG | + | chr1.2:85757605-85757624 | None:intergenic | 35.0% | |
AATCAGATGTCATCAAAACG+TGG | - | chr1.2:85758468-85758487 | MS.gene066436:intron | 35.0% | |
ACGGACTTAAAGAACTAACA+CGG | + | chr1.2:85757345-85757364 | None:intergenic | 35.0% | |
AGTTGAGCATCTGAAGATAA+AGG | - | chr1.2:85758296-85758315 | MS.gene066436:intron | 35.0% | |
ATAGGTCCTTAAAAGGGTAA+CGG | + | chr1.2:85757364-85757383 | None:intergenic | 35.0% | |
CACGGAAAAGATACATATCA+TGG | + | chr1.2:85756767-85756786 | None:intergenic | 35.0% | |
GAACCAATTGAAAGGGATAA+AGG | + | chr1.2:85756924-85756943 | None:intergenic | 35.0% | |
GAATATCCTTAATGCCTTAC+AGG | - | chr1.2:85756714-85756733 | MS.gene066436:intron | 35.0% | |
GATACACACCAATAGTTGAT+AGG | + | chr1.2:85757796-85757815 | None:intergenic | 35.0% | |
GTTATACCGTATGAATGGAA+TGG | - | chr1.2:85756526-85756545 | MS.gene066436:CDS | 35.0% | |
TCATTCGCTTATAATGCAGA+AGG | - | chr1.2:85756874-85756893 | MS.gene066436:intron | 35.0% | |
TCCGTAGGTAACAACTTATT+TGG | + | chr1.2:85758076-85758095 | None:intergenic | 35.0% | |
TCTTGAAGCTGAACTGAAAA+AGG | - | chr1.2:85757108-85757127 | MS.gene066436:intron | 35.0% | |
TGTCAGTTCCTGAAAACAAA+AGG | + | chr1.2:85757053-85757072 | None:intergenic | 35.0% | |
TTAAAAGTTCGCGTGACTAA+AGG | - | chr1.2:85756240-85756259 | MS.gene066436:intron | 35.0% | |
TTTCATCTTCCTGTCAATCA+AGG | + | chr1.2:85758418-85758437 | None:intergenic | 35.0% | |
! | CAACTTTCTGGAAGATACTT+GGG | - | chr1.2:85758493-85758512 | MS.gene066436:intron | 35.0% |
! | TCAACTTTCTGGAAGATACT+TGG | - | chr1.2:85758492-85758511 | MS.gene066436:intron | 35.0% |
! | TCGATATGTCTTGTTCTATG+AGG | - | chr1.2:85758048-85758067 | MS.gene066436:intron | 35.0% |
! | TTAAGGCCAAATACCTCTTT+TGG | - | chr1.2:85757295-85757314 | MS.gene066436:intron | 35.0% |
! | TTAAGTCCGTTACCCTTTTA+AGG | - | chr1.2:85757355-85757374 | MS.gene066436:intron | 35.0% |
! | TTGATTTGACCTTGATTGAC+AGG | - | chr1.2:85758406-85758425 | MS.gene066436:intron | 35.0% |
! | TTTGATGATTGTACATGACC+AGG | - | chr1.2:85756370-85756389 | MS.gene066436:CDS | 35.0% |
!! | AAAGGACCAAAAGAGGTATT+TGG | + | chr1.2:85757304-85757323 | None:intergenic | 35.0% |
!! | AATTGGTTCAAATTTTCGGG+GGG | - | chr1.2:85756935-85756954 | MS.gene066436:intron | 35.0% |
!! | CAATTGGTTCAAATTTTCGG+GGG | - | chr1.2:85756934-85756953 | MS.gene066436:intron | 35.0% |
!! | CTGTGGATTTTGACAATTAC+AGG | + | chr1.2:85756621-85756640 | None:intergenic | 35.0% |
!! | GGGGATGAATTTAAGTTTTG+TGG | - | chr1.2:85756960-85756979 | MS.gene066436:intron | 35.0% |
!! | TTAAGCAGCGTTGATTTAAC+AGG | + | chr1.2:85758353-85758372 | None:intergenic | 35.0% |
!!! | TCTTCTTGCCTTTTGTTTTC+AGG | - | chr1.2:85757042-85757061 | MS.gene066436:intron | 35.0% |
AAGTTGTTACCTACGGAGTT+TGG | - | chr1.2:85758079-85758098 | MS.gene066436:intron | 40.0% | |
AGTTGTTACCTACGGAGTTT+GGG | - | chr1.2:85758080-85758099 | MS.gene066436:intron | 40.0% | |
CAAAACGTGGATCAACTTTC+TGG | - | chr1.2:85758481-85758500 | MS.gene066436:intron | 40.0% | |
CAAGCATAACAATAACAGCC+TGG | + | chr1.2:85756391-85756410 | None:intergenic | 40.0% | |
CAGACTTAAAGGACCAAAAG+AGG | + | chr1.2:85757311-85757330 | None:intergenic | 40.0% | |
GAAAAAGAACACCCAAGTGA+TGG | + | chr1.2:85756838-85756857 | None:intergenic | 40.0% | |
GATTGTTTGCTTCCTCAAAC+TGG | + | chr1.2:85758272-85758291 | None:intergenic | 40.0% | |
GGTGTAGCGTGAACAAATTT+GGG | + | chr1.2:85756816-85756835 | None:intergenic | 40.0% | |
GTGTAGCGTGAACAAATTTG+GGG | + | chr1.2:85756815-85756834 | None:intergenic | 40.0% | |
GTTCATTACCGTTGAAGTGA+TGG | + | chr1.2:85756465-85756484 | None:intergenic | 40.0% | |
TCGCTTATAATGCAGAAGGT+GGG | - | chr1.2:85756878-85756897 | MS.gene066436:intron | 40.0% | |
TGAAACTGGTGAAAAGGAGA+AGG | - | chr1.2:85756266-85756285 | MS.gene066436:intron | 40.0% | |
TGACAGACAACAAAAAGAGG+AGG | - | chr1.2:85756215-85756234 | MS.gene066436:intron | 40.0% | |
TTCGCTTATAATGCAGAAGG+TGG | - | chr1.2:85756877-85756896 | MS.gene066436:intron | 40.0% | |
TTCTGCTGAATCAGGTCTAT+CGG | + | chr1.2:85758706-85758725 | None:intergenic | 40.0% | |
! | CATGTTCCTGTAAGGCATTA+AGG | + | chr1.2:85756723-85756742 | None:intergenic | 40.0% |
! | GCAAGAATTGGTTTAAGCTG+TGG | + | chr1.2:85756638-85756657 | None:intergenic | 40.0% |
!!! | GACACTCATTTTGAAACGGA+CGG | + | chr1.2:85757700-85757719 | None:intergenic | 40.0% |
AAAATAAGACCCTGCACGGT+TGG | + | chr1.2:85756131-85756150 | None:intergenic | 45.0% | |
AAAGTTCGCGTGACTAAAGG+TGG | - | chr1.2:85756243-85756262 | MS.gene066436:intron | 45.0% | |
ACGGAGTTTGGGTGAAAACA+CGG | - | chr1.2:85758091-85758110 | MS.gene066436:intron | 45.0% | |
AGGTGGTGAAACTGGTGAAA+AGG | - | chr1.2:85756260-85756279 | MS.gene066436:intron | 45.0% | |
CGTCTGCCATTCCATTCATA+CGG | + | chr1.2:85756535-85756554 | None:intergenic | 45.0% | |
GACACTCGTTATGAAACGGA+GGG | - | chr1.2:85757963-85757982 | MS.gene066436:intron | 45.0% | |
GAGAGACGAAACGCAAGAAT+TGG | + | chr1.2:85756650-85756669 | None:intergenic | 45.0% | |
GGGTGTAGCGTGAACAAATT+TGG | + | chr1.2:85756817-85756836 | None:intergenic | 45.0% | |
GTGACTAAAGGTGGTGAAAC+TGG | - | chr1.2:85756252-85756271 | MS.gene066436:intron | 45.0% | |
TCTGCTGAATCAGGTCTATC+GGG | + | chr1.2:85758705-85758724 | None:intergenic | 45.0% | |
! | AGGGACATGATTTGTGCCAA+AGG | + | chr1.2:85756601-85756620 | None:intergenic | 45.0% |
! | TGTTTTCACCCAAACTCCGT+AGG | + | chr1.2:85758091-85758110 | None:intergenic | 45.0% |
AAGCACGATTGTGGAACGTG+AGG | - | chr1.2:85758235-85758254 | MS.gene066436:intron | 50.0% | |
AGCACGATTGTGGAACGTGA+GGG | - | chr1.2:85758236-85758255 | MS.gene066436:intron | 50.0% | |
CGACACTCGTTATGAAACGG+AGG | - | chr1.2:85757962-85757981 | MS.gene066436:intron | 50.0% | |
GAGTTTGGGTGAAAACACGG+TGG | - | chr1.2:85758094-85758113 | MS.gene066436:intron | 50.0% | |
GGAAGAGAGAGACCAGTTTG+AGG | - | chr1.2:85758257-85758276 | MS.gene066436:intron | 50.0% | |
TCACGCTACACCCATCACTT+GGG | - | chr1.2:85756824-85756843 | MS.gene066436:intron | 50.0% | |
TTCACGCTACACCCATCACT+TGG | - | chr1.2:85756823-85756842 | MS.gene066436:intron | 50.0% | |
!! | GGTTCAAATTTTCGGGGGGT+GGG | - | chr1.2:85756939-85756958 | MS.gene066436:intron | 50.0% |
!! | GTTCAAATTTTCGGGGGGTG+GGG | - | chr1.2:85756940-85756959 | MS.gene066436:intron | 50.0% |
!! | TGGTTCAAATTTTCGGGGGG+TGG | - | chr1.2:85756938-85756957 | MS.gene066436:intron | 50.0% |
!! | TTCAAATTTTCGGGGGGTGG+GGG | - | chr1.2:85756941-85756960 | MS.gene066436:intron | 50.0% |
AAACCAGGAACCAACCGTGC+AGG | - | chr1.2:85756118-85756137 | MS.gene066436:CDS | 55.0% | |
AACCAGGAACCAACCGTGCA+GGG | - | chr1.2:85756119-85756138 | MS.gene066436:CDS | 55.0% | |
CTGCTGCTCAAGCACGATTG+TGG | - | chr1.2:85758226-85758245 | MS.gene066436:intron | 55.0% | |
GCTGAATCAGGTCTATCGGG+TGG | + | chr1.2:85758702-85758721 | None:intergenic | 55.0% | |
!! | CAGGTCTATCGGGTGGACTA+TGG | + | chr1.2:85758695-85758714 | None:intergenic | 55.0% |
! | GACCCTGCACGGTTGGTTCC+TGG | + | chr1.2:85756124-85756143 | None:intergenic | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1.2 | gene | 85756115 | 85758728 | 85756115 | ID=MS.gene066436 |
chr1.2 | mRNA | 85756115 | 85758728 | 85756115 | ID=MS.gene066436.t1;Parent=MS.gene066436 |
chr1.2 | exon | 85758703 | 85758728 | 85758703 | ID=MS.gene066436.t1.exon1;Parent=MS.gene066436.t1 |
chr1.2 | CDS | 85758703 | 85758728 | 85758703 | ID=cds.MS.gene066436.t1;Parent=MS.gene066436.t1 |
chr1.2 | exon | 85758556 | 85758622 | 85758556 | ID=MS.gene066436.t1.exon2;Parent=MS.gene066436.t1 |
chr1.2 | CDS | 85758556 | 85758622 | 85758556 | ID=cds.MS.gene066436.t1;Parent=MS.gene066436.t1 |
chr1.2 | exon | 85757714 | 85757779 | 85757714 | ID=MS.gene066436.t1.exon3;Parent=MS.gene066436.t1 |
chr1.2 | CDS | 85757714 | 85757779 | 85757714 | ID=cds.MS.gene066436.t1;Parent=MS.gene066436.t1 |
chr1.2 | exon | 85756526 | 85756633 | 85756526 | ID=MS.gene066436.t1.exon4;Parent=MS.gene066436.t1 |
chr1.2 | CDS | 85756526 | 85756633 | 85756526 | ID=cds.MS.gene066436.t1;Parent=MS.gene066436.t1 |
chr1.2 | exon | 85756285 | 85756415 | 85756285 | ID=MS.gene066436.t1.exon5;Parent=MS.gene066436.t1 |
chr1.2 | CDS | 85756285 | 85756415 | 85756285 | ID=cds.MS.gene066436.t1;Parent=MS.gene066436.t1 |
chr1.2 | exon | 85756115 | 85756157 | 85756115 | ID=MS.gene066436.t1.exon6;Parent=MS.gene066436.t1 |
chr1.2 | CDS | 85756115 | 85756157 | 85756115 | ID=cds.MS.gene066436.t1;Parent=MS.gene066436.t1 |
Gene Sequence |
Protein sequence |