Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene066957.t1 | XP_013452660.1 | 93.3 | 209 | 13 | 1 | 1 | 208 | 1 | 209 | 2.30E-96 | 361.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene066957.t1 | Q9SJ52 | 42.7 | 171 | 90 | 6 | 26 | 194 | 60 | 224 | 6.3e-26 | 119.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene066957.t1 | A0A072UCB3 | 93.3 | 209 | 13 | 1 | 1 | 208 | 1 | 209 | 1.7e-96 | 361.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049171 | MS.gene066957 | -0.815214 | 1.04E-51 | -1.69E-46 |
| MS.gene049281 | MS.gene066957 | 0.819355 | 1.21E-52 | -1.69E-46 |
| MS.gene049320 | MS.gene066957 | -0.825128 | 5.55E-54 | -1.69E-46 |
| MS.gene049549 | MS.gene066957 | 0.801402 | 9.16E-49 | -1.69E-46 |
| MS.gene049611 | MS.gene066957 | 0.813476 | 2.51E-51 | -1.69E-46 |
| MS.gene049634 | MS.gene066957 | 0.82978 | 4.25E-55 | -1.69E-46 |
| MS.gene050095 | MS.gene066957 | 0.807115 | 5.92E-50 | -1.69E-46 |
| MS.gene050096 | MS.gene066957 | 0.820662 | 6.09E-53 | -1.69E-46 |
| MS.gene050363 | MS.gene066957 | 0.810105 | 1.36E-50 | -1.69E-46 |
| MS.gene050381 | MS.gene066957 | 0.861904 | 7.39E-64 | -1.69E-46 |
| MS.gene050504 | MS.gene066957 | -0.81841 | 1.99E-52 | -1.69E-46 |
| MS.gene050547 | MS.gene066957 | 0.813422 | 2.58E-51 | -1.69E-46 |
| MS.gene050612 | MS.gene066957 | -0.815568 | 8.65E-52 | -1.69E-46 |
| MS.gene050699 | MS.gene066957 | -0.803632 | 3.18E-49 | -1.69E-46 |
| MS.gene05080 | MS.gene066957 | -0.801345 | 9.41E-49 | -1.69E-46 |
| MS.gene050868 | MS.gene066957 | -0.82541 | 4.76E-54 | -1.69E-46 |
| MS.gene050871 | MS.gene066957 | -0.820975 | 5.16E-53 | -1.69E-46 |
| MS.gene050883 | MS.gene066957 | 0.825604 | 4.28E-54 | -1.69E-46 |
| MS.gene051044 | MS.gene066957 | 0.83099 | 2.15E-55 | -1.69E-46 |
| MS.gene05104 | MS.gene066957 | 0.813973 | 1.95E-51 | -1.69E-46 |
| MS.gene051127 | MS.gene066957 | 0.852615 | 4.11E-61 | -1.69E-46 |
| MS.gene051138 | MS.gene066957 | 0.864342 | 1.30E-64 | -1.69E-46 |
| MS.gene051364 | MS.gene066957 | 0.810577 | 1.08E-50 | -1.69E-46 |
| MS.gene05141 | MS.gene066957 | 0.811758 | 5.96E-51 | -1.69E-46 |
| MS.gene051632 | MS.gene066957 | 0.805045 | 1.61E-49 | -1.69E-46 |
| MS.gene051694 | MS.gene066957 | -0.808823 | 2.56E-50 | -1.69E-46 |
| MS.gene051858 | MS.gene066957 | -0.806437 | 8.23E-50 | -1.69E-46 |
| MS.gene051946 | MS.gene066957 | 0.833156 | 6.27E-56 | -1.69E-46 |
| MS.gene051973 | MS.gene066957 | 0.803406 | 3.54E-49 | -1.69E-46 |
| MS.gene052211 | MS.gene066957 | 0.821953 | 3.07E-53 | -1.69E-46 |
| MS.gene05234 | MS.gene066957 | 0.802294 | 6.01E-49 | -1.69E-46 |
| MS.gene05240 | MS.gene066957 | 0.801208 | 1.00E-48 | -1.69E-46 |
| MS.gene053203 | MS.gene066957 | -0.807948 | 3.94E-50 | -1.69E-46 |
| MS.gene053406 | MS.gene066957 | 0.812458 | 4.20E-51 | -1.69E-46 |
| MS.gene053420 | MS.gene066957 | 0.870539 | 1.35E-66 | -1.69E-46 |
| MS.gene053488 | MS.gene066957 | 0.867871 | 9.94E-66 | -1.69E-46 |
| MS.gene053549 | MS.gene066957 | 0.800595 | 1.34E-48 | -1.69E-46 |
| MS.gene053561 | MS.gene066957 | 0.858069 | 1.06E-62 | -1.69E-46 |
| MS.gene053887 | MS.gene066957 | 0.8322 | 1.08E-55 | -1.69E-46 |
| MS.gene054054 | MS.gene066957 | 0.812973 | 3.24E-51 | -1.69E-46 |
| MS.gene054146 | MS.gene066957 | 0.803989 | 2.68E-49 | -1.69E-46 |
| MS.gene054708 | MS.gene066957 | 0.838354 | 3.02E-57 | -1.69E-46 |
| MS.gene05470 | MS.gene066957 | -0.805135 | 1.54E-49 | -1.69E-46 |
| MS.gene054959 | MS.gene066957 | 0.828748 | 7.57E-55 | -1.69E-46 |
| MS.gene055124 | MS.gene066957 | 0.835532 | 1.59E-56 | -1.69E-46 |
| MS.gene055154 | MS.gene066957 | 0.861802 | 7.94E-64 | -1.69E-46 |
| MS.gene055202 | MS.gene066957 | 0.822315 | 2.53E-53 | -1.69E-46 |
| MS.gene055240 | MS.gene066957 | 0.801942 | 7.10E-49 | -1.69E-46 |
| MS.gene055362 | MS.gene066957 | -0.819875 | 9.23E-53 | -1.69E-46 |
| MS.gene055502 | MS.gene066957 | -0.828004 | 1.14E-54 | -1.69E-46 |
| MS.gene055577 | MS.gene066957 | -0.816197 | 6.26E-52 | -1.69E-46 |
| MS.gene05589 | MS.gene066957 | -0.815049 | 1.13E-51 | -1.69E-46 |
| MS.gene056224 | MS.gene066957 | 0.838201 | 3.31E-57 | -1.69E-46 |
| MS.gene056310 | MS.gene066957 | 0.815526 | 8.84E-52 | -1.69E-46 |
| MS.gene056311 | MS.gene066957 | 0.840585 | 7.96E-58 | -1.69E-46 |
| MS.gene056313 | MS.gene066957 | 0.823499 | 1.34E-53 | -1.69E-46 |
| MS.gene056504 | MS.gene066957 | -0.815046 | 1.13E-51 | -1.69E-46 |
| MS.gene056657 | MS.gene066957 | -0.800441 | 1.44E-48 | -1.69E-46 |
| MS.gene056748 | MS.gene066957 | 0.804174 | 2.45E-49 | -1.69E-46 |
| MS.gene056856 | MS.gene066957 | 0.816939 | 4.27E-52 | -1.69E-46 |
| MS.gene056988 | MS.gene066957 | 0.801259 | 9.80E-49 | -1.69E-46 |
| MS.gene057014 | MS.gene066957 | 0.853503 | 2.29E-61 | -1.69E-46 |
| MS.gene057261 | MS.gene066957 | 0.800245 | 1.58E-48 | -1.69E-46 |
| MS.gene058068 | MS.gene066957 | 0.808643 | 2.80E-50 | -1.69E-46 |
| MS.gene058093 | MS.gene066957 | 0.804983 | 1.66E-49 | -1.69E-46 |
| MS.gene058099 | MS.gene066957 | 0.830263 | 3.24E-55 | -1.69E-46 |
| MS.gene058109 | MS.gene066957 | 0.801731 | 7.84E-49 | -1.69E-46 |
| MS.gene058117 | MS.gene066957 | 0.817813 | 2.71E-52 | -1.69E-46 |
| MS.gene058171 | MS.gene066957 | 0.826853 | 2.16E-54 | -1.69E-46 |
| MS.gene058173 | MS.gene066957 | 0.817372 | 3.41E-52 | -1.69E-46 |
| MS.gene058175 | MS.gene066957 | 0.831226 | 1.88E-55 | -1.69E-46 |
| MS.gene05837 | MS.gene066957 | -0.808944 | 2.42E-50 | -1.69E-46 |
| MS.gene058419 | MS.gene066957 | -0.812724 | 3.67E-51 | -1.69E-46 |
| MS.gene058493 | MS.gene066957 | 0.832388 | 9.72E-56 | -1.69E-46 |
| MS.gene058494 | MS.gene066957 | 0.826654 | 2.41E-54 | -1.69E-46 |
| MS.gene058603 | MS.gene066957 | 0.877815 | 4.64E-69 | -1.69E-46 |
| MS.gene058840 | MS.gene066957 | 0.814142 | 1.79E-51 | -1.69E-46 |
| MS.gene059022 | MS.gene066957 | -0.829869 | 4.04E-55 | -1.69E-46 |
| MS.gene059023 | MS.gene066957 | -0.807739 | 4.36E-50 | -1.69E-46 |
| MS.gene059223 | MS.gene066957 | 0.843113 | 1.71E-58 | -1.69E-46 |
| MS.gene059677 | MS.gene066957 | -0.810952 | 8.92E-51 | -1.69E-46 |
| MS.gene059690 | MS.gene066957 | 0.811867 | 5.65E-51 | -1.69E-46 |
| MS.gene059691 | MS.gene066957 | 0.805255 | 1.46E-49 | -1.69E-46 |
| MS.gene059694 | MS.gene066957 | 0.822311 | 2.54E-53 | -1.69E-46 |
| MS.gene059697 | MS.gene066957 | 0.821235 | 4.50E-53 | -1.69E-46 |
| MS.gene059718 | MS.gene066957 | -0.812181 | 4.82E-51 | -1.69E-46 |
| MS.gene059865 | MS.gene066957 | -0.813463 | 2.53E-51 | -1.69E-46 |
| MS.gene059902 | MS.gene066957 | -0.817405 | 3.35E-52 | -1.69E-46 |
| MS.gene059916 | MS.gene066957 | 0.822581 | 2.19E-53 | -1.69E-46 |
| MS.gene059953 | MS.gene066957 | 0.802332 | 5.90E-49 | -1.69E-46 |
| MS.gene060595 | MS.gene066957 | 0.801975 | 6.99E-49 | -1.69E-46 |
| MS.gene060762 | MS.gene066957 | -0.815475 | 9.07E-52 | -1.69E-46 |
| MS.gene06077 | MS.gene066957 | -0.823607 | 1.26E-53 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene066957.t1 | MTR_6g471080 | 90.521 | 211 | 19 | 1 | 1 | 210 | 1 | 211 | 5.90e-126 | 354 |
| MS.gene066957.t1 | MTR_6g471090 | 80.488 | 205 | 39 | 1 | 3 | 206 | 6 | 210 | 3.58e-115 | 327 |
| MS.gene066957.t1 | MTR_6g071410 | 75.943 | 212 | 45 | 2 | 3 | 208 | 7 | 218 | 2.28e-107 | 307 |
| MS.gene066957.t1 | MTR_6g070890 | 75.943 | 212 | 45 | 2 | 3 | 208 | 7 | 218 | 2.28e-107 | 307 |
| MS.gene066957.t1 | MTR_6g070900 | 72.596 | 208 | 55 | 2 | 3 | 208 | 7 | 214 | 4.37e-99 | 286 |
| MS.gene066957.t1 | MTR_6g071400 | 72.596 | 208 | 55 | 2 | 3 | 208 | 7 | 214 | 4.37e-99 | 286 |
| MS.gene066957.t1 | MTR_6g071710 | 72.368 | 152 | 41 | 1 | 58 | 208 | 11 | 162 | 5.49e-69 | 208 |
| MS.gene066957.t1 | MTR_2g048270 | 59.091 | 154 | 55 | 5 | 45 | 197 | 2 | 148 | 9.51e-57 | 177 |
| MS.gene066957.t1 | MTR_1g057270 | 43.827 | 162 | 81 | 7 | 24 | 182 | 74 | 228 | 5.06e-32 | 116 |
| MS.gene066957.t1 | MTR_4g119428 | 46.212 | 132 | 68 | 3 | 17 | 146 | 65 | 195 | 4.49e-31 | 114 |
| MS.gene066957.t1 | MTR_7g106030 | 34.483 | 203 | 112 | 8 | 6 | 194 | 33 | 228 | 1.64e-30 | 112 |
| MS.gene066957.t1 | MTR_7g106010 | 36.170 | 188 | 110 | 6 | 11 | 194 | 43 | 224 | 2.29e-30 | 112 |
| MS.gene066957.t1 | MTR_7g105870 | 43.871 | 155 | 80 | 5 | 22 | 174 | 58 | 207 | 1.19e-25 | 99.8 |
| MS.gene066957.t1 | MTR_7g105970 | 31.553 | 206 | 112 | 10 | 5 | 194 | 31 | 223 | 1.34e-24 | 97.1 |
| MS.gene066957.t1 | MTR_7g106000 | 33.505 | 194 | 106 | 9 | 5 | 183 | 31 | 216 | 1.51e-24 | 96.7 |
| MS.gene066957.t1 | MTR_1g057400 | 31.606 | 193 | 104 | 9 | 5 | 178 | 10 | 193 | 3.77e-21 | 87.4 |
| MS.gene066957.t1 | MTR_6g453010 | 36.047 | 172 | 84 | 5 | 11 | 176 | 17 | 168 | 7.49e-20 | 83.2 |
| MS.gene066957.t1 | MTR_2g011350 | 34.884 | 86 | 55 | 1 | 20 | 104 | 37 | 122 | 1.95e-14 | 69.3 |
| MS.gene066957.t1 | MTR_7g106050 | 28.931 | 159 | 105 | 5 | 6 | 161 | 19 | 172 | 2.32e-14 | 69.3 |
| MS.gene066957.t1 | MTR_3g063310 | 34.815 | 135 | 75 | 5 | 21 | 148 | 83 | 211 | 8.91e-14 | 68.6 |
| MS.gene066957.t1 | MTR_1g057290 | 34.503 | 171 | 97 | 8 | 30 | 193 | 51 | 213 | 1.47e-12 | 64.7 |
| MS.gene066957.t1 | MTR_2g086790 | 26.316 | 171 | 109 | 5 | 4 | 161 | 16 | 182 | 2.14e-12 | 64.3 |
| MS.gene066957.t1 | MTR_1g019920 | 42.105 | 76 | 38 | 3 | 19 | 89 | 3 | 77 | 4.56e-12 | 60.1 |
| MS.gene066957.t1 | MTR_2g087000 | 26.136 | 176 | 117 | 4 | 9 | 180 | 52 | 218 | 5.04e-12 | 63.2 |
| MS.gene066957.t1 | MTR_5g076170 | 33.071 | 127 | 82 | 3 | 24 | 148 | 97 | 222 | 7.33e-12 | 63.2 |
| MS.gene066957.t1 | MTR_1g057420 | 32.609 | 138 | 87 | 5 | 26 | 161 | 39 | 172 | 2.21e-11 | 61.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene066957.t1 | AT2G35980 | 44.318 | 176 | 81 | 6 | 12 | 174 | 35 | 206 | 1.26e-36 | 128 |
| MS.gene066957.t1 | AT5G06320 | 39.247 | 186 | 102 | 8 | 11 | 194 | 52 | 228 | 2.24e-31 | 114 |
| MS.gene066957.t1 | AT2G35460 | 35.263 | 190 | 113 | 7 | 7 | 194 | 54 | 235 | 9.43e-31 | 113 |
| MS.gene066957.t1 | AT3G11650 | 32.812 | 192 | 121 | 6 | 4 | 194 | 52 | 236 | 3.01e-29 | 109 |
| MS.gene066957.t1 | AT3G52470 | 34.545 | 110 | 70 | 2 | 4 | 111 | 16 | 125 | 2.50e-16 | 74.7 |
| MS.gene066957.t1 | AT1G32270 | 30.968 | 155 | 100 | 5 | 28 | 180 | 1 | 150 | 6.84e-16 | 75.5 |
| MS.gene066957.t1 | AT1G32270 | 30.968 | 155 | 100 | 5 | 28 | 180 | 1 | 150 | 1.58e-15 | 74.7 |
| MS.gene066957.t1 | AT3G11660 | 29.940 | 167 | 99 | 6 | 4 | 161 | 15 | 172 | 1.33e-14 | 70.1 |
| MS.gene066957.t1 | AT4G09590 | 29.139 | 151 | 102 | 5 | 6 | 154 | 21 | 168 | 6.06e-14 | 68.2 |
| MS.gene066957.t1 | AT2G35960 | 30.769 | 143 | 93 | 5 | 21 | 161 | 35 | 173 | 1.31e-12 | 64.7 |
| MS.gene066957.t1 | AT2G35970 | 29.139 | 151 | 102 | 5 | 6 | 154 | 21 | 168 | 1.46e-12 | 64.3 |
| MS.gene066957.t1 | AT5G22870 | 25.532 | 188 | 118 | 6 | 10 | 184 | 24 | 202 | 1.65e-12 | 64.3 |
| MS.gene066957.t1 | AT1G65690 | 29.448 | 163 | 100 | 6 | 9 | 157 | 71 | 232 | 9.62e-12 | 62.8 |
| MS.gene066957.t1 | AT3G44220 | 30.612 | 147 | 94 | 6 | 16 | 160 | 31 | 171 | 1.12e-11 | 62.0 |
Find 38 sgRNAs with CRISPR-Local
Find 43 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTCTAGGACTAAGAGAAAA+TGG | 0.290514 | 6.4:-48014659 | None:intergenic |
| TCTTGGGATTTATAAAGATT+TGG | 0.312711 | 6.4:+48014502 | MS.gene066957:CDS |
| TAATCACCATCATCGTCTTC+TGG | 0.338455 | 6.4:+48014162 | MS.gene066957:CDS |
| GAACCACTGTTACATCTTCT+AGG | 0.339363 | 6.4:-48014674 | None:intergenic |
| TTTATAAAAGCTTCCATACT+TGG | 0.377157 | 6.4:-48014552 | None:intergenic |
| TCGGCGTTTGAGAGTTCCTT+TGG | 0.409123 | 6.4:+48014607 | MS.gene066957:CDS |
| GTTCGAATTAGGGCCAAGTA+TGG | 0.417987 | 6.4:+48014539 | MS.gene066957:CDS |
| AAACGCCGACACTGGACAAC+CGG | 0.453051 | 6.4:-48014593 | None:intergenic |
| ACGTGAAATTTCACACTTGA+GGG | 0.456152 | 6.4:-48014197 | None:intergenic |
| ATAGACTATGATGTTGTTGT+TGG | 0.461075 | 6.4:-48014303 | None:intergenic |
| TAGACTATGATGTTGTTGTT+GGG | 0.464761 | 6.4:-48014302 | None:intergenic |
| CTGCTGCTTTATTTGCATCA+CGG | 0.469747 | 6.4:-48014709 | None:intergenic |
| ACTTTGACACCCTTTGATCA+AGG | 0.484433 | 6.4:+48014380 | MS.gene066957:CDS |
| TGGTGATGATGAGTTACTAT+TGG | 0.487019 | 6.4:-48014639 | None:intergenic |
| TATTCTGAAGAGACACGTCT+TGG | 0.496905 | 6.4:+48014485 | MS.gene066957:CDS |
| GGAAATTCTATCATCAAACT+TGG | 0.500531 | 6.4:+48014443 | MS.gene066957:CDS |
| CTTGGACCTATCGAATTCAA+AGG | 0.500883 | 6.4:+48014422 | MS.gene066957:CDS |
| AAGTGGTCGGTTTAATCCAC+CGG | 0.502974 | 6.4:+48014574 | MS.gene066957:CDS |
| GAACTCTCAAACGCCGACAC+TGG | 0.505962 | 6.4:-48014601 | None:intergenic |
| ACCTCACCACAAATATGGGT+TGG | 0.517407 | 6.4:+48014093 | None:intergenic |
| CCTCACCACAAATATGGGTT+GGG | 0.518502 | 6.4:+48014094 | None:intergenic |
| ATTCTGAAGAGACACGTCTT+GGG | 0.539671 | 6.4:+48014486 | MS.gene066957:CDS |
| AGTCTATTATCGAAGAATCA+AGG | 0.541807 | 6.4:+48014319 | MS.gene066957:CDS |
| ATCCACCGGTTGTCCAGTGT+CGG | 0.543668 | 6.4:+48014588 | MS.gene066957:CDS |
| AGACTATGATGTTGTTGTTG+GGG | 0.552465 | 6.4:-48014301 | None:intergenic |
| TTCGATAGGTCCAAGAAAAG+TGG | 0.557190 | 6.4:-48014414 | None:intergenic |
| GAAGAATCAAGGCCATTGCT+TGG | 0.570010 | 6.4:+48014330 | MS.gene066957:CDS |
| AATATAAGTTGTTGTTTGTG+AGG | 0.572559 | 6.4:-48014247 | None:intergenic |
| TACGTGAAATTTCACACTTG+AGG | 0.573509 | 6.4:-48014198 | None:intergenic |
| GAATTTCCTTTGAATTCGAT+AGG | 0.573832 | 6.4:-48014428 | None:intergenic |
| CGCCGACACTGGACAACCGG+TGG | 0.576977 | 6.4:-48014590 | None:intergenic |
| ATTGTCTTTGTACCAAGCAA+TGG | 0.580644 | 6.4:-48014342 | None:intergenic |
| TATTATCCAGAAGACGATGA+TGG | 0.595315 | 6.4:-48014168 | None:intergenic |
| GTTGTTTGTGAGGTTGAACT+CGG | 0.599773 | 6.4:-48014237 | None:intergenic |
| GAACTCGGTGAGAGTTGCAT+CGG | 0.601986 | 6.4:-48014222 | None:intergenic |
| CGATGATGGTGATTACGAAG+AGG | 0.658850 | 6.4:-48014154 | None:intergenic |
| AGTCCTAGAAGATGTAACAG+TGG | 0.698011 | 6.4:+48014671 | MS.gene066957:CDS |
| CTATTGGAAGAAGAAACCAA+AGG | 0.773456 | 6.4:-48014623 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| ! | TCTTGGGATTTATAAAGATT+TGG | + | chr6.4:48014502-48014521 | MS.gene066957:CDS | 25.0% |
| ! | TTTATAAAAGCTTCCATACT+TGG | - | chr6.4:48014555-48014574 | None:intergenic | 25.0% |
| !! | TATGGAAGCTTTTATAAAAG+TGG | + | chr6.4:48014557-48014576 | MS.gene066957:CDS | 25.0% |
| !!! | AATATAAGTTGTTGTTTGTG+AGG | - | chr6.4:48014250-48014269 | None:intergenic | 25.0% |
| !!! | TGATTTTGATGTTCGAATTA+GGG | + | chr6.4:48014529-48014548 | MS.gene066957:CDS | 25.0% |
| !!! | TTGATTTTGATGTTCGAATT+AGG | + | chr6.4:48014528-48014547 | MS.gene066957:CDS | 25.0% |
| AGTCTATTATCGAAGAATCA+AGG | + | chr6.4:48014319-48014338 | MS.gene066957:CDS | 30.0% | |
| ATAGACTATGATGTTGTTGT+TGG | - | chr6.4:48014306-48014325 | None:intergenic | 30.0% | |
| GAATTTCCTTTGAATTCGAT+AGG | - | chr6.4:48014431-48014450 | None:intergenic | 30.0% | |
| GGAAATTCTATCATCAAACT+TGG | + | chr6.4:48014443-48014462 | MS.gene066957:CDS | 30.0% | |
| ! | ATTTTTGTGTCCTTGATCAA+AGG | - | chr6.4:48014393-48014412 | None:intergenic | 30.0% |
| ! | GAAGCTTTTATAAAAGTGGT+CGG | + | chr6.4:48014561-48014580 | MS.gene066957:CDS | 30.0% |
| ! | TAGACTATGATGTTGTTGTT+GGG | - | chr6.4:48014305-48014324 | None:intergenic | 30.0% |
| ! | TTTTTGTGTCCTTGATCAAA+GGG | - | chr6.4:48014392-48014411 | None:intergenic | 30.0% |
| !! | CACAAAAATACCACTTTTCT+TGG | + | chr6.4:48014404-48014423 | MS.gene066957:CDS | 30.0% |
| ACGTGAAATTTCACACTTGA+GGG | - | chr6.4:48014200-48014219 | None:intergenic | 35.0% | |
| ATTGTCTTTGTACCAAGCAA+TGG | - | chr6.4:48014345-48014364 | None:intergenic | 35.0% | |
| CTATTGGAAGAAGAAACCAA+AGG | - | chr6.4:48014626-48014645 | None:intergenic | 35.0% | |
| TACGTGAAATTTCACACTTG+AGG | - | chr6.4:48014201-48014220 | None:intergenic | 35.0% | |
| TATTATCCAGAAGACGATGA+TGG | - | chr6.4:48014171-48014190 | None:intergenic | 35.0% | |
| ! | AGACTATGATGTTGTTGTTG+GGG | - | chr6.4:48014304-48014323 | None:intergenic | 35.0% |
| ! | TGGTGATGATGAGTTACTAT+TGG | - | chr6.4:48014642-48014661 | None:intergenic | 35.0% |
| !! | CTTCTAGGACTAAGAGAAAA+TGG | - | chr6.4:48014662-48014681 | None:intergenic | 35.0% |
| ACTTTGACACCCTTTGATCA+AGG | + | chr6.4:48014380-48014399 | MS.gene066957:CDS | 40.0% | |
| AGTCCTAGAAGATGTAACAG+TGG | + | chr6.4:48014671-48014690 | MS.gene066957:CDS | 40.0% | |
| CTTGGACCTATCGAATTCAA+AGG | + | chr6.4:48014422-48014441 | MS.gene066957:CDS | 40.0% | |
| GAACCACTGTTACATCTTCT+AGG | - | chr6.4:48014677-48014696 | None:intergenic | 40.0% | |
| GTTGTTTGTGAGGTTGAACT+CGG | - | chr6.4:48014240-48014259 | None:intergenic | 40.0% | |
| TAATCACCATCATCGTCTTC+TGG | + | chr6.4:48014162-48014181 | MS.gene066957:CDS | 40.0% | |
| TTCGATAGGTCCAAGAAAAG+TGG | - | chr6.4:48014417-48014436 | None:intergenic | 40.0% | |
| ! | ATTCTGAAGAGACACGTCTT+GGG | + | chr6.4:48014486-48014505 | MS.gene066957:CDS | 40.0% |
| ! | TATTCTGAAGAGACACGTCT+TGG | + | chr6.4:48014485-48014504 | MS.gene066957:CDS | 40.0% |
| !! | CTGCTGCTTTATTTGCATCA+CGG | - | chr6.4:48014712-48014731 | None:intergenic | 40.0% |
| GAAGAATCAAGGCCATTGCT+TGG | + | chr6.4:48014330-48014349 | MS.gene066957:CDS | 45.0% | |
| GTTCGAATTAGGGCCAAGTA+TGG | + | chr6.4:48014539-48014558 | MS.gene066957:CDS | 45.0% | |
| ! | AAGTGGTCGGTTTAATCCAC+CGG | + | chr6.4:48014574-48014593 | MS.gene066957:CDS | 45.0% |
| ! | CGATGATGGTGATTACGAAG+AGG | - | chr6.4:48014157-48014176 | None:intergenic | 45.0% |
| TCGGCGTTTGAGAGTTCCTT+TGG | + | chr6.4:48014607-48014626 | MS.gene066957:CDS | 50.0% | |
| ! | GAACTCGGTGAGAGTTGCAT+CGG | - | chr6.4:48014225-48014244 | None:intergenic | 50.0% |
| AAACGCCGACACTGGACAAC+CGG | - | chr6.4:48014596-48014615 | None:intergenic | 55.0% | |
| GAACTCTCAAACGCCGACAC+TGG | - | chr6.4:48014604-48014623 | None:intergenic | 55.0% | |
| ! | ATCCACCGGTTGTCCAGTGT+CGG | + | chr6.4:48014588-48014607 | MS.gene066957:CDS | 55.0% |
| CGCCGACACTGGACAACCGG+TGG | - | chr6.4:48014593-48014612 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6.4 | gene | 48014107 | 48014739 | 48014107 | ID=MS.gene066957 |
| chr6.4 | mRNA | 48014107 | 48014739 | 48014107 | ID=MS.gene066957.t1;Parent=MS.gene066957 |
| chr6.4 | exon | 48014107 | 48014739 | 48014107 | ID=MS.gene066957.t1.exon1;Parent=MS.gene066957.t1 |
| chr6.4 | CDS | 48014107 | 48014739 | 48014107 | ID=cds.MS.gene066957.t1;Parent=MS.gene066957.t1 |
| Gene Sequence |
| Protein sequence |
