AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene072430


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene072430.t1 MTR_7g114070 98.113 318 5 1 1 317 7 324 0.0 630
MS.gene072430.t1 MTR_7g114080 98.258 287 5 0 317 603 82 368 0.0 594
MS.gene072430.t1 MTR_7g114080 95.122 287 5 1 317 603 82 359 0.0 568
MS.gene072430.t1 MTR_7g114080 99.545 220 1 0 317 536 82 301 4.02e-160 462
MS.gene072430.t1 MTR_7g114070 97.817 229 4 1 1 228 7 235 4.94e-157 451
MS.gene072430.t1 MTR_7g114070 97.817 229 4 1 1 228 7 235 5.39e-157 451
MS.gene072430.t1 MTR_7g114070 93.776 241 14 1 1 240 7 247 1.08e-155 450
MS.gene072430.t1 MTR_7g114080 99.438 178 1 0 317 494 82 259 5.20e-126 375
MS.gene072430.t1 MTR_7g088350 34.694 147 70 3 395 541 163 283 2.24e-21 97.8
MS.gene072430.t1 MTR_6g033315 27.652 264 133 8 308 541 41 276 7.19e-21 96.3
MS.gene072430.t1 MTR_3g098840 27.692 195 114 3 395 589 151 318 4.00e-20 93.6
MS.gene072430.t1 MTR_4g116160 32.292 192 111 4 272 445 236 426 1.13e-19 93.2
MS.gene072430.t1 MTR_6g038020 29.767 215 103 5 353 541 71 263 1.14e-19 92.4
MS.gene072430.t1 MTR_6g038020 29.767 215 103 5 353 541 74 266 1.34e-19 92.0
MS.gene072430.t1 MTR_4g116160 30.964 197 107 6 272 445 63 253 1.53e-19 92.4
MS.gene072430.t1 MTR_4g116160 30.964 197 107 6 272 445 236 426 1.93e-19 92.8
MS.gene072430.t1 MTR_1g112830 39.167 120 66 2 355 471 418 533 1.93e-19 92.8
MS.gene072430.t1 MTR_1g098390 33.333 147 79 2 395 541 136 263 1.05e-18 89.4
MS.gene072430.t1 MTR_4g092760 34.932 146 82 3 312 444 178 323 3.55e-18 88.2
MS.gene072430.t1 MTR_7g083480 28.365 208 122 3 397 604 152 332 5.62e-18 87.4
MS.gene072430.t1 MTR_4g092760 35.374 147 81 4 312 444 266 412 7.34e-18 87.4
MS.gene072430.t1 MTR_2g066060 28.782 271 179 6 53 321 123 381 1.00e-17 85.9
MS.gene072430.t1 MTR_4g021795 28.571 175 100 4 301 458 3 169 1.84e-16 80.9
MS.gene072430.t1 MTR_7g088360 31.757 148 75 2 395 541 162 284 2.43e-16 82.0
MS.gene072430.t1 MTR_1g094610 35.659 129 73 5 355 475 55 181 4.01e-16 79.3
MS.gene072430.t1 MTR_5g023230 38.554 83 43 2 397 479 170 244 1.42e-13 71.2
MS.gene072430.t1 MTR_5g023230 30.769 143 72 3 397 539 150 265 4.54e-13 71.2
MS.gene072430.t1 MTR_5g023230 31.429 140 69 3 397 536 170 282 5.53e-13 71.2
MS.gene072430.t1 MTR_5g042870 59.091 44 18 0 397 440 181 224 1.52e-12 70.9
MS.gene072430.t1 MTR_4g082560 50.000 54 27 0 397 450 181 234 1.71e-12 70.9
MS.gene072430.t1 MTR_1g085980 37.255 102 49 4 362 452 114 211 2.35e-12 70.1
MS.gene072430.t1 MTR_7g118050 33.333 93 46 2 362 438 76 168 3.00e-12 67.0
MS.gene072430.t1 MTR_7g118050 33.333 93 46 2 362 438 76 168 4.68e-12 67.8
MS.gene072430.t1 MTR_4g023760 25.758 264 137 10 313 550 22 252 1.36e-11 66.2
MS.gene072430.t1 MTR_4g074600 30.233 129 81 3 397 518 76 202 2.47e-11 65.1
MS.gene072430.t1 MTR_4g074600 31.008 129 80 3 397 518 172 298 6.39e-11 65.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene072430.t1 AT5G27290 76.610 295 68 1 24 317 31 325 4.77e-164 472
MS.gene072430.t1 AT3G04970 64.311 283 92 3 326 602 4 283 2.67e-131 387
MS.gene072430.t1 AT3G04970 63.356 292 98 3 317 602 82 370 3.21e-131 390
MS.gene072430.t1 AT5G27290 75.862 232 55 1 24 254 31 262 2.93e-125 370
MS.gene072430.t1 AT3G04970 73.009 226 61 0 317 542 82 307 4.82e-124 369
MS.gene072430.t1 AT1G54680 31.922 307 152 4 20 317 9 267 4.02e-41 151
MS.gene072430.t1 AT1G54680 31.629 313 151 4 20 317 9 273 1.70e-40 149
MS.gene072430.t1 AT1G54680 32.107 299 140 4 34 317 12 262 5.11e-40 148
MS.gene072430.t1 AT1G54680 42.105 152 78 2 175 317 51 201 2.64e-35 133
MS.gene072430.t1 AT5G50020 28.679 265 136 6 353 593 72 307 4.96e-22 99.4
MS.gene072430.t1 AT5G50020 28.679 265 136 6 353 593 102 337 7.88e-22 99.4
MS.gene072430.t1 AT3G26935 27.490 251 133 5 359 587 91 314 5.98e-21 96.7
MS.gene072430.t1 AT5G41060 29.703 202 102 4 359 540 24 205 1.04e-20 94.4
MS.gene072430.t1 AT5G41060 29.703 202 102 4 359 540 24 205 1.04e-20 94.4
MS.gene072430.t1 AT5G41060 29.703 202 102 4 359 540 76 257 1.79e-20 94.4
MS.gene072430.t1 AT5G41060 29.703 202 102 4 359 540 91 272 2.03e-20 94.4
MS.gene072430.t1 AT1G56180 30.698 215 135 5 110 321 175 378 3.22e-20 93.6
MS.gene072430.t1 AT2G14255 42.857 98 46 2 358 445 316 413 4.46e-20 94.7
MS.gene072430.t1 AT4G24630 34.694 147 76 2 395 541 136 262 1.50e-19 91.7
MS.gene072430.t1 AT3G56930 29.954 217 122 4 395 611 146 332 2.34e-19 92.0
MS.gene072430.t1 AT3G48760 30.180 222 108 5 347 541 83 284 4.59e-19 90.9
MS.gene072430.t1 AT5G50020 27.547 265 132 7 353 593 72 300 1.01e-17 86.3
MS.gene072430.t1 AT3G56920 34.694 147 72 3 395 541 142 264 2.79e-17 84.0
MS.gene072430.t1 AT5G05070 31.757 148 75 2 395 541 171 293 2.97e-17 84.7
MS.gene072430.t1 AT2G40990 33.333 147 75 3 395 541 160 283 1.07e-16 83.2
MS.gene072430.t1 AT5G20350 30.233 172 104 4 280 436 242 412 5.24e-16 82.0
MS.gene072430.t1 AT1G69420 50.000 68 32 2 397 462 165 232 5.02e-14 75.9
MS.gene072430.t1 AT1G69420 50.000 68 32 2 397 462 165 232 5.02e-14 75.9
MS.gene072430.t1 AT3G09320 34.028 144 69 4 395 536 97 216 5.11e-14 73.6
MS.gene072430.t1 AT5G04270 33.333 90 60 0 369 458 66 155 2.99e-13 70.9
MS.gene072430.t1 AT4G00840 38.824 85 43 3 362 438 71 154 3.95e-13 69.7
MS.gene072430.t1 AT4G00840 34.247 146 72 7 313 438 13 154 1.22e-12 69.3
MS.gene072430.t1 AT3G51390 40.984 61 36 0 397 457 159 219 1.45e-11 66.6
MS.gene072430.t1 AT3G51390 40.984 61 36 0 397 457 164 224 1.45e-11 66.6
MS.gene072430.t1 AT4G01730 27.778 180 101 7 362 527 116 280 1.89e-11 67.4
MS.gene072430.t1 AT4G15080 28.743 167 93 6 397 558 176 321 8.77e-11 65.5
MS.gene072430.t1 AT4G15080 28.743 167 93 6 397 558 176 321 8.77e-11 65.5
MS.gene072430.t1 AT3G60800 25.926 270 145 9 313 554 22 264 8.84e-11 63.9

Find 145 sgRNAs with CRISPR-Local

Find 0 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATGGAATTGAAAATTCATTT+TGG 0.153553 7.3:-2868858 MS.gene072430:CDS
CTTAACTTTGCAGTTTATTA+TGG 0.173681 7.3:-2868877 MS.gene072430:intron
AAGAATAATGTTTACAATAA+AGG 0.202965 7.3:-2867910 MS.gene072430:intron
TATTATCATGCAGTGGTTAT+TGG 0.211095 7.3:-2868728 MS.gene072430:intron
AGGATATACACTTTCTAGTT+TGG 0.265974 7.3:-2874411 MS.gene072430:CDS
GTTGCTGCTTGGAATGTCTT+TGG 0.278212 7.3:-2875459 MS.gene072430:CDS
TGCACTGAGTATCTTATATA+TGG 0.284619 7.3:-2873809 MS.gene072430:CDS
TTGACCAGCTTTACTGATCC+TGG 0.302736 7.3:-2870176 MS.gene072430:CDS
ATTCTCACCCTTGCAAGTTT+AGG 0.304336 7.3:+2875914 None:intergenic
ATTATCATGCAGTGGTTATT+GGG 0.310919 7.3:-2868727 MS.gene072430:intron
CTAGAAAGTGTATATCCTTT+AGG 0.318332 7.3:+2874416 None:intergenic
AAAGTTGTCTATATTCTAAC+AGG 0.323299 7.3:-2868977 MS.gene072430:intron
GTTTCTGTGGACTCTGGATT+TGG 0.325214 7.3:-2875394 MS.gene072430:intron
TTGGACGAATTGAAGCTAAA+TGG 0.341057 7.3:-2875570 MS.gene072430:CDS
TATGTAAAAGATTTGTTGTT+GGG 0.350037 7.3:+2875431 None:intergenic
AGCTGCTCTTGCACTTGTTA+AGG 0.362242 7.3:-2875810 MS.gene072430:CDS
GCTTGCCGAGGCCATGTCTC+TGG 0.367059 7.3:-2873554 MS.gene072430:CDS
AAGAAGAATCTGAGTGTTGT+AGG 0.368816 7.3:+2868702 None:intergenic
TCAGTCAGAAATACCACAAC+AGG 0.372976 7.3:-2874583 MS.gene072430:CDS
CCCAACGGGCTTCAGTGTTT+CGG 0.378346 7.3:-2875773 MS.gene072430:CDS
CTATTAAAGGTCTTGGTAGC+TGG 0.380467 7.3:-2867785 MS.gene072430:intron
TAAATAGTATCCAGGGATAT+AGG 0.387946 7.3:+2870348 None:intergenic
GCAATTGTTGGGATGCTGTT+AGG 0.392269 7.3:-2868667 MS.gene072430:CDS
TCAAGCTGGCACAGCCTTTG+TGG 0.393475 7.3:-2874357 MS.gene072430:CDS
CATTTCCTTCTATGTATGTA+TGG 0.394359 7.3:-2869046 MS.gene072430:CDS
TACTGATCCTGGGACAATAA+AGG 0.405997 7.3:-2870165 MS.gene072430:CDS
TGGTGGAGGTCTTGGTAGCT+TGG 0.407245 7.3:-2874630 MS.gene072430:CDS
TAGTTGCACTTAAATTTGAA+TGG 0.407365 7.3:-2867761 MS.gene072430:CDS
AGATTCTTTGCTCAACGGAC+TGG 0.409538 7.3:-2873668 MS.gene072430:CDS
GAGAAACACTCGATATTTCA+TGG 0.410575 7.3:-2869779 MS.gene072430:CDS
CATGTAGTCTTGCCACTTGA+AGG 0.417053 7.3:+2868083 None:intergenic
ATTGCTGTTTCTGTGGACTC+TGG 0.428658 7.3:-2875400 MS.gene072430:CDS
TTCTCAGCCTTTATTGTCCC+AGG 0.429320 7.3:+2870158 None:intergenic
GTGTTTCGGCGCGGCTAGAC+AGG 0.430642 7.3:-2875759 MS.gene072430:intron
TCCAATGTATAAAGCCTTTG+AGG 0.434942 7.3:+2875588 None:intergenic
GCATGGTGTCTGTGTGGGCG+TGG 0.440088 7.3:-2875960 MS.gene072430:CDS
AGCTTCTTCGCAGCTGCTGT+TGG 0.443853 7.3:-2870215 MS.gene072430:CDS
GATTCTTTGCTCAACGGACT+GGG 0.445879 7.3:-2873667 MS.gene072430:CDS
ATGTATGGAACAGTTCTCAT+AGG 0.449403 7.3:-2869031 MS.gene072430:CDS
TGGTGTCATGCAGGTTAACT+CGG 0.450519 7.3:-2874005 MS.gene072430:intron
TCTTCCTTTGCCTATATCCC+TGG 0.452747 7.3:-2870358 MS.gene072430:CDS
CCGAAACACTGAAGCCCGTT+GGG 0.454050 7.3:+2875773 None:intergenic
GTGGGTCTCCCATCATCCCT+CGG 0.454251 7.3:-2875941 MS.gene072430:CDS
ATGCTGTTAGGCGGATTCTT+CGG 0.458907 7.3:-2868655 MS.gene072430:CDS
CTTCAAGTGGCAAGACTACA+TGG 0.460027 7.3:-2868082 MS.gene072430:CDS
TTTAGCTCCCCATGTTGTAC+AGG 0.468240 7.3:-2868833 MS.gene072430:intron
TTAATTATGCAGCATGAAGC+TGG 0.468510 7.3:-2874473 MS.gene072430:intron
TAGTTTGGATGGTCTGATGA+AGG 0.468887 7.3:-2874396 MS.gene072430:CDS
AATCGTTGTCAAGCAACAAA+TGG 0.469650 7.3:-2867978 MS.gene072430:CDS
TCTCCTGTGGATACAACTCT+TGG 0.469950 7.3:-2875525 MS.gene072430:CDS
TTGTTGGAGGGGTTGCTGCT+TGG 0.473306 7.3:-2875470 MS.gene072430:CDS
AGCTTGGTTGTTGATACAAT+TGG 0.475036 7.3:-2874614 MS.gene072430:CDS
AGTTGCACTTAAATTTGAAT+GGG 0.475690 7.3:-2867760 MS.gene072430:CDS
TTGATTGCTGCTATTGTTGG+AGG 0.477423 7.3:-2875483 MS.gene072430:CDS
TTGTTGATTGCTGCTATTGT+TGG 0.478556 7.3:-2875486 MS.gene072430:CDS
ACTTGCAGAATAATTGCATA+GGG 0.478657 7.3:-2869804 MS.gene072430:intron
ATTTACAAGGCAAACCCAAC+GGG 0.479735 7.3:-2875787 MS.gene072430:CDS
TATACACTTTCTAGTTTGGA+TGG 0.483671 7.3:-2874407 MS.gene072430:CDS
CTGTTCCATACATACATAGA+AGG 0.484200 7.3:+2869041 None:intergenic
ATATGTAAAAGATTTGTTGT+TGG 0.485032 7.3:+2875430 None:intergenic
GTAGACAAGGAGCTAACAAA+AGG 0.485325 7.3:-2875842 MS.gene072430:CDS
TGTAGAAAGTACCTCATTAG+TGG 0.485997 7.3:+2868600 None:intergenic
GTTGCACTTAAATAGTATCC+AGG 0.487943 7.3:+2870340 None:intergenic
CTTTGGGATTGCTGTTTCTG+TGG 0.491836 7.3:-2875407 MS.gene072430:CDS
CATTAGTGGTAGTGTTACTA+AGG 0.495405 7.3:+2868614 None:intergenic
TCCTCAAAGGCTTTATACAT+TGG 0.495811 7.3:-2875589 MS.gene072430:CDS
TTAGGTTGCCCGAGGGATGA+TGG 0.499093 7.3:+2875932 None:intergenic
CTGGTTGGAATACTTCCTAA+AGG 0.508155 7.3:-2874431 MS.gene072430:CDS
AAGATCACCTCTGGAGGATG+TGG 0.515168 7.3:-2867941 MS.gene072430:CDS
TGCGTCGGCATGAAGCGGCT+CGG 0.517038 7.3:-2873582 MS.gene072430:CDS
TTTCATGTATAGCCTTGGCC+GGG 0.517216 7.3:-2873835 MS.gene072430:CDS
TGACCAGCTTTACTGATCCT+GGG 0.517218 7.3:-2870175 MS.gene072430:CDS
CTGCAATGCTTTGATCTAGC+AGG 0.517826 7.3:+2869975 None:intergenic
AGGCAGATTCTCAAGTTAGA+TGG 0.520302 7.3:-2873630 MS.gene072430:CDS
CATGGTGTCTGTGTGGGCGT+GGG 0.521142 7.3:-2875959 MS.gene072430:CDS
GAGAAAGTTAAAAGAAGCGC+AGG 0.522389 7.3:-2868052 MS.gene072430:CDS
TAGAAACCTTGGTGGAGCAT+TGG 0.524756 7.3:+2875891 None:intergenic
GGTGTCATGCAGGTTAACTC+GGG 0.525542 7.3:-2874004 MS.gene072430:intron
GGCATGTCTCTCTACTGTTT+AGG 0.526455 7.3:-2867739 None:intergenic
TGATTGCTGCTATTGTTGGA+GGG 0.533663 7.3:-2875482 MS.gene072430:CDS
ACTGGGCTTCACACAGAAGA+AGG 0.533968 7.3:-2873650 MS.gene072430:CDS
TAGGTTGCCCGAGGGATGAT+GGG 0.534094 7.3:+2875933 None:intergenic
TAGACAAGGAGCTAACAAAA+GGG 0.534186 7.3:-2875841 MS.gene072430:CDS
CTCATAGGTTTAATTCTCGC+AGG 0.542159 7.3:-2869016 MS.gene072430:CDS
GATTGCTGCTATTGTTGGAG+GGG 0.542235 7.3:-2875481 MS.gene072430:CDS
CTTGCCGAGGCCATGTCTCT+GGG 0.545979 7.3:-2873553 MS.gene072430:CDS
TGGGTCTCCCATCATCCCTC+GGG 0.547419 7.3:-2875940 MS.gene072430:CDS
GCACTTGTTAAGGATTTACA+AGG 0.547995 7.3:-2875800 MS.gene072430:CDS
TTGTCTGCTGCTAGAAACCT+TGG 0.549145 7.3:+2875880 None:intergenic
ATAGGCAAAGGAAGAGTTGA+CGG 0.558591 7.3:+2870366 None:intergenic
TAGTTAGATTCTTTGCTCAA+CGG 0.559584 7.3:-2873673 MS.gene072430:CDS
CTGATGCATGGTGTCTGTGT+GGG 0.560006 7.3:-2875965 MS.gene072430:CDS
GCCGAAACACTGAAGCCCGT+TGG 0.562867 7.3:+2875772 None:intergenic
TGTCCCAGGATCAGTAAAGC+TGG 0.563242 7.3:+2870172 None:intergenic
TACTTGCAGAATAATTGCAT+AGG 0.565761 7.3:-2869805 MS.gene072430:intron
TCGGGCAACCTAAACTTGCA+AGG 0.567337 7.3:-2875922 MS.gene072430:CDS
CTGTATTGCAGACCTTCAAG+TGG 0.570061 7.3:-2868095 MS.gene072430:intron
TACTAAGGCAAAGCTTTGCA+TGG 0.571822 7.3:+2868629 None:intergenic
AGGTTTGGATGACATAAGAA+AGG 0.577567 7.3:-2873774 MS.gene072430:intron
AAAACCTCACCTGTACAACA+TGG 0.578089 7.3:+2868824 None:intergenic
TTTGGATGGTCTGATGAAGG+AGG 0.579418 7.3:-2874393 MS.gene072430:CDS
TTGGATGGTCTGATGAAGGA+GGG 0.582343 7.3:-2874392 MS.gene072430:CDS
TTACTATGCAGGTTCCTCAA+AGG 0.584607 7.3:-2875602 MS.gene072430:intron
CTCAGTGCATACCCCGGCCA+AGG 0.585904 7.3:+2873823 None:intergenic
GGTTCTCTCAATATTCAAGC+TGG 0.588540 7.3:-2874371 MS.gene072430:CDS
ACTTCCCAGAGACATGGCCT+CGG 0.589552 7.3:+2873549 None:intergenic
CACAGGAGATAGAAGAGACA+TGG 0.591418 7.3:+2875539 None:intergenic
TGACCATCACTGTGGATGGA+TGG 0.596777 7.3:-2869925 MS.gene072430:intron
CGGGCAACCTAAACTTGCAA+GGG 0.599823 7.3:-2875921 MS.gene072430:CDS
TAGTAACACTACCACTAATG+AGG 0.600625 7.3:-2868611 MS.gene072430:intron
GAGCCGCTTCATGCCGACGC+AGG 0.600999 7.3:+2873584 None:intergenic
AGTGGCAAGACTACATGGAC+TGG 0.601667 7.3:-2868077 MS.gene072430:CDS
TGCAAGTTTAGGTTGCCCGA+GGG 0.604363 7.3:+2875925 None:intergenic
GATTTGACCATCACTGTGGA+TGG 0.605648 7.3:-2869929 MS.gene072430:CDS
TTGCACTTAAATAGTATCCA+GGG 0.606733 7.3:+2870341 None:intergenic
GGCTCGGTCTAAGCTTGCCG+AGG 0.607634 7.3:-2873566 MS.gene072430:CDS
TCTGCTGCTAGAAACCTTGG+TGG 0.611026 7.3:+2875883 None:intergenic
ACTCCTGCGTCGGCATGAAG+CGG 0.614282 7.3:-2873587 MS.gene072430:CDS
GAACCAAGAGTTGTATCCAC+AGG 0.614813 7.3:+2875522 None:intergenic
TAACCATCCATCCACAGTGA+TGG 0.615375 7.3:+2869922 None:intergenic
GCGCTAAAACAAAGTATCAG+TGG 0.615716 7.3:-2868018 MS.gene072430:CDS
ACACAGTCTTACTCCTGCGT+CGG 0.616405 7.3:-2873597 MS.gene072430:CDS
GTATCCAGGGATATAGGCAA+AGG 0.616666 7.3:+2870354 None:intergenic
GATTTACAAGGCAAACCCAA+CGG 0.620582 7.3:-2875788 MS.gene072430:CDS
CATGTCTCTTCTATCTCCTG+TGG 0.624063 7.3:-2875538 MS.gene072430:CDS
TTCATGTATAGCCTTGGCCG+GGG 0.624932 7.3:-2873834 MS.gene072430:CDS
TTGCAAGTTTAGGTTGCCCG+AGG 0.626994 7.3:+2875924 None:intergenic
TACAGAACTTCCCAGAGACA+TGG 0.628089 7.3:+2873543 None:intergenic
AAACCTCACCTGTACAACAT+GGG 0.629986 7.3:+2868825 None:intergenic
TGACTTGAGTAACCCTGTTG+TGG 0.633706 7.3:+2874570 None:intergenic
TCTGATGCATGGTGTCTGTG+TGG 0.635410 7.3:-2875966 None:intergenic
AACCTCACCTGTACAACATG+GGG 0.636619 7.3:+2868826 None:intergenic
CTTGCAGAATAATTGCATAG+GGG 0.645521 7.3:-2869803 MS.gene072430:intron
ATTGCTTGAAAGTGTAGACA+AGG 0.647018 7.3:-2875855 MS.gene072430:CDS
GTGTCATGCAGGTTAACTCG+GGG 0.654440 7.3:-2874003 MS.gene072430:intron
ATTGTTGGGATGCTGTTAGG+CGG 0.658661 7.3:-2868664 MS.gene072430:CDS
AAGATACTCAGTGCATACCC+CGG 0.662404 7.3:+2873817 None:intergenic
GAGAAACTCAAAATCCACAA+AGG 0.662893 7.3:+2874343 None:intergenic
CGGGCTTCAGTGTTTCGGCG+CGG 0.680129 7.3:-2875768 MS.gene072430:CDS
CAGTCAGAAATACCACAACA+GGG 0.684532 7.3:-2874582 MS.gene072430:CDS
ATTGGTTTGAGTCTGATGCA+TGG 0.684860 7.3:-2875977 None:intergenic
AGACAAGGAGCTAACAAAAG+GGG 0.696044 7.3:-2875840 MS.gene072430:CDS
GAGAATCCAATGCTCCACCA+AGG 0.696493 7.3:-2875897 MS.gene072430:CDS
ACAACTACCACATCCTCCAG+AGG 0.699566 7.3:+2867934 None:intergenic
GCACGATTTGACCATCACTG+TGG 0.771092 7.3:-2869933 MS.gene072430:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content


Chromosome Type Strat End Strand Name
chr7.3 gene 2867740 2875984 2867740 ID=MS.gene072430
chr7.3 mRNA 2867740 2875984 2867740 ID=MS.gene072430.t1;Parent=MS.gene072430
chr7.3 exon 2875760 2875984 2875760 ID=MS.gene072430.t1.exon1;Parent=MS.gene072430.t1
chr7.3 CDS 2875760 2875984 2875760 ID=cds.MS.gene072430.t1;Parent=MS.gene072430.t1
chr7.3 exon 2875395 2875613 2875395 ID=MS.gene072430.t1.exon2;Parent=MS.gene072430.t1
chr7.3 CDS 2875395 2875613 2875395 ID=cds.MS.gene072430.t1;Parent=MS.gene072430.t1
chr7.3 exon 2874574 2874660 2874574 ID=MS.gene072430.t1.exon3;Parent=MS.gene072430.t1
chr7.3 CDS 2874574 2874660 2874574 ID=cds.MS.gene072430.t1;Parent=MS.gene072430.t1
chr7.3 exon 2874337 2874483 2874337 ID=MS.gene072430.t1.exon4;Parent=MS.gene072430.t1
chr7.3 CDS 2874337 2874483 2874337 ID=cds.MS.gene072430.t1;Parent=MS.gene072430.t1
chr7.3 exon 2873988 2874014 2873988 ID=MS.gene072430.t1.exon5;Parent=MS.gene072430.t1
chr7.3 CDS 2873988 2874014 2873988 ID=cds.MS.gene072430.t1;Parent=MS.gene072430.t1
chr7.3 exon 2873775 2873870 2873775 ID=MS.gene072430.t1.exon6;Parent=MS.gene072430.t1
chr7.3 CDS 2873775 2873870 2873775 ID=cds.MS.gene072430.t1;Parent=MS.gene072430.t1
chr7.3 exon 2873546 2873692 2873546 ID=MS.gene072430.t1.exon7;Parent=MS.gene072430.t1
chr7.3 CDS 2873546 2873692 2873546 ID=cds.MS.gene072430.t1;Parent=MS.gene072430.t1
chr7.3 exon 2870334 2870428 2870334 ID=MS.gene072430.t1.exon8;Parent=MS.gene072430.t1
chr7.3 CDS 2870334 2870428 2870334 ID=cds.MS.gene072430.t1;Parent=MS.gene072430.t1
chr7.3 exon 2870077 2870244 2870077 ID=MS.gene072430.t1.exon9;Parent=MS.gene072430.t1
chr7.3 CDS 2870077 2870244 2870077 ID=cds.MS.gene072430.t1;Parent=MS.gene072430.t1
chr7.3 exon 2869926 2869998 2869926 ID=MS.gene072430.t1.exon10;Parent=MS.gene072430.t1
chr7.3 CDS 2869926 2869998 2869926 ID=cds.MS.gene072430.t1;Parent=MS.gene072430.t1
chr7.3 exon 2869766 2869818 2869766 ID=MS.gene072430.t1.exon11;Parent=MS.gene072430.t1
chr7.3 CDS 2869766 2869818 2869766 ID=cds.MS.gene072430.t1;Parent=MS.gene072430.t1
chr7.3 exon 2868978 2869069 2868978 ID=MS.gene072430.t1.exon12;Parent=MS.gene072430.t1
chr7.3 CDS 2868978 2869069 2868978 ID=cds.MS.gene072430.t1;Parent=MS.gene072430.t1
chr7.3 exon 2868834 2868886 2868834 ID=MS.gene072430.t1.exon13;Parent=MS.gene072430.t1
chr7.3 CDS 2868834 2868886 2868834 ID=cds.MS.gene072430.t1;Parent=MS.gene072430.t1
chr7.3 exon 2868612 2868737 2868612 ID=MS.gene072430.t1.exon14;Parent=MS.gene072430.t1
chr7.3 CDS 2868612 2868737 2868612 ID=cds.MS.gene072430.t1;Parent=MS.gene072430.t1
chr7.3 exon 2867911 2868106 2867911 ID=MS.gene072430.t1.exon15;Parent=MS.gene072430.t1
chr7.3 CDS 2867911 2868106 2867911 ID=cds.MS.gene072430.t1;Parent=MS.gene072430.t1
chr7.3 exon 2867740 2867798 2867740 ID=MS.gene072430.t1.exon16;Parent=MS.gene072430.t1
chr7.3 CDS 2867740 2867798 2867740 ID=cds.MS.gene072430.t1;Parent=MS.gene072430.t1
Gene Sequence

>MS.gene072430

ATGCATGGTGTCTGTGTGGGCGTGGGTCTCCCATCATCCCTCGGGCAACCTAAACTTGCAAGGGTGAGAATCCAATGCTCCACCAAGGTTTCTAGCAGCAGACAACAATTGCTTGAAAGTGTAGACAAGGAGCTAACAAAAGGGGATGATAGAGCTGCTCTTGCACTTGTTAAGGATTTACAAGGCAAACCCAACGGGCTTCAGTGTTTCGGCGCGGCTAGACAGGTTGGTTAATTAAAGTGACACTAATGACCATTTTATATCCGTTCTGAGTGAATTTGATTTGATAACTCCCATCCTTGATGTTAGTCTTGAGTTATGAAGTTAGGAATTTGTAGCTTGTTTCATTTGTTGTGTGAATTACTATGCAGGTTCCTCAAAGGCTTTATACATTGGACGAATTGAAGCTAAATGGAATAGAAGCCATGTCTCTTCTATCTCCTGTGGATACAACTCTTGGTTCAATTGAGAGAAATTTGTTGATTGCTGCTATTGTTGGAGGGGTTGCTGCTTGGAATGTCTTTGGAATTTCCCAACAACAAATCTTTTACATATCTTTGGGATTGCTGTTTCTGTGGACTCTGGATTTGGTATTACTACTTGCACCTGGACTCAAATTTACTGCATTCATTCCACTATATGAAACTATGAATGAAATGAAAATGCCATGTCTCACAGAAGAACCACCTGTTTTACATATGTTAAGGATTTGTTTAGATTGGCTTATTTGAACATATCTATTGACATTAACACTTGTGTGACTTTTTGAGAGAGCATATGGATGCAGCTTATCATATGTCTATTAGCTGTTTTTAGCTTATTTTCATAAGCCCTGCTTATAAAAAGCTTATAGTTTATATGAAGAAAAAAAACTTGACTTTATTTTATATGTTGATATAGAAATATCATGTAAATATTCGCTTATCCAGACAGAATCTTTGCTGAACAAAAGCATTTGTTTACTTTTGTGATAACTAATAACTATGATACTCTACTTGTCTATTTGACTGAGCTTATTCTCTTATCTCATGCTTTTTCTACCCCTGACTTGTTGGGGTGTTGGTCATTTTAACCTTATCGAAAAATGCTATTTCAAATTTGAATGTTTCCAATACTAATGAAACATTTTATTTTCATCAACCTCGTATGCTGATTTTTCCTTATAAAACAACATCATAACTCTGAAAATCTTGACCAAGTTTGTTTATCAATCATCGCTAGCTGCTACTCAACGTCCCGTTACATCTATGTTTGTCCGCTTACATGCTACTTCAGTAACCAGTGCATGGAGATTTTTTATGCTCATCAAATTGATTGTTTTCAGGTCTCTTTTGGTGGAGGTCTTGGTAGCTTGGTTGTTGATACAATTGGTCACAAATTCAGTCAGAAATACCACAACAGGGTTACTCAAGTCAGATTCATTTTATTGTTAGCACTTACAATAATTTTATTTCTTATAGCTTACATCATGAAGTAACTAGAACAAAATTTAATTATGCAGCATGAAGCTGGCCATTTTTTAATTGCTTATCTGGTTGGAATACTTCCTAAAGGATATACACTTTCTAGTTTGGATGGTCTGATGAAGGAGGGTTCTCTCAATATTCAAGCTGGCACAGCCTTTGTGGATTTTGAGTTTCTCGAAGAAGTTGGTTGCTTTATTTGTTCCGTATATTTAATGCACTATTTTTACTTTCAAAGGTACTAGAAAGAGAGAAAAAGTATCTACTAGGAATGTGTCCTTTGCATGAATACCTGTCCTAGTAGTCTGAGTTTGACCCTTGTCGCAATTTAGCAGCAAGACCTTGTCTTTTCGCATCTATTTTAGTCCAGTGACTCCATAATATTTATGTATATGATAGAATACATGTTTTATCTCGCTTTGAACTGTTTGCTTATCGAGTAGACCATAAACTGGGGTTAGTTGACGGTTATATATGTTGATTGTTATTACCTTTGGTGTCATGCAGGTTAACTCGGGGAAAGTATCAGCTACAGTATGTTTCCGCCTTACAAACATCTAATTTTAATTGCTTTGTTTTCTTTAATCGACGTTGTGTAGATTATGAAGATAAGATTGATTATGTGACAAAACCTTTGTTTTATGTTATCAGACATTGAACAAATTTTCATGTATAGCCTTGGCCGGGGTATGCACTGAGTATCTTATATATGGATTTTCTGAAGGAGGTTTGGATGACATAAGAAAGGTAACTTGTTATTTTTGTCATGAGAAATGGATGCCCACATGGTATTTACATTAATAACTGTAGTTTTCTTAATTGTGAATAGTTAGATTCTTTGCTCAACGGACTGGGCTTCACACAGAAGAAGGCAGATTCTCAAGTTAGATGGTCTGTGCTAAACACAGTCTTACTCCTGCGTCGGCATGAAGCGGCTCGGTCTAAGCTTGCCGAGGCCATGTCTCTGGGAAGTTCTGTAGGATCCTGCATTGATACTATAGAGAATTCTATCAATGTTTCAGATCTATAACGGAAGTTGGATATACTGTGTTCCTGCCTCCTGGTACACGTTCAAGTTTCGAAAAAAATTCCATTCGGTGTTACCCTGGTCATATCTTATGCAAGCAGAATGTGAATGGCTTTTGTTACAGTTGAACGGGTTAGCAATTTCCAAGACTTCCTGTATGAAGGATCCTTTATGAAGAGAAAAAGGACAAGTGATGTAACCCTGCAAAGTAGGTTTAATTTTCAAGGATAAAGTATATATAGTTGAGGTATGCTTAAATAACTCATTTGAACATATTTGTATGGTTAGGCACCAGAAAGAGCTTGATCATTGTCTGAGCTTGTATATACAGTTCATGACTCTACAGGATAATTCAGTCTTTGACCATGTAGCTGAGGCATTGTCACTACTCACTAGCATAACGGTCCATATGTTAGACATGTGTTTTTAATTGAGATTACTTGTTGTGTCCAAGTTTACGGAGAAGTCTCTTCAACGAGGAATTCTTTGTAAGCGCAAGTCATTGACTCGCGTTGACTACGTCCATGCGCTTTGTACACATCGCCCGAATAAAAAATAGTTTTCCTTTATTTTAGAAAGAACTGCTTTATCTACATTATATTAGCTCGCGTTGACTACGTTCATGCACTTTATACACACCGTCTGAATAATTTTTTTTATCAAGTTAAACGATGATAGCAAGAAAATAAAAGTTTCCTTTATTTTTGAAAGAACTGTTGTATCTACACTGCATGGAAATAATTCTGCCCATTAAAAACATCACTGGTTACCAATACTGAAATCTTATCACAAGGCATGCATGATTGATGGAATTGGAAAGACTTCTAGCTTGCATGTTGGTTAACAATATTAAATTGTGTTTTCAGAAGTTTGACCAAACAATCGTACAAAACTTATGCTAGTAGATAAACTTAAATAAGCCAATCCAAACATGCCAAATCTGAAAATAAAATACAATTAGGTCTTGTTTGGATAAACAACTTATTTTTCAGCTTACAACATAAAACATAAGTGTTTATCATGATAAACACTTATGTATAAGTTATTTCTCTATAAACAATAGCTAAAATAAATATACATTGTTTTAGTATAAGTTATAAGTTGTTTTCATAAACCATCTTTGAGAACTTGTGAAAATATGCTGAAAAACAACTTATGCACATGAAAAATTCTTTTTTATATGTTTTTTATCAAATAGTCTCACAAATACGTATATATTACCGTATAAACTTAAATAACCTATTAAAAAAACACATAAACTTAAATAAGTAAATTCGAAAGACCCTATAAATGAATTGTTTCTCCTATTTCTTTGTAGGTGCTGTTTGTTTTTATTAAAATTAAAACAACAAAAAGAAAGGGCAATTCCATATATAAAAATTAATTAAGAGTAATATTTAATTTGTTACTTATGTTATTGACAAACACATACTAGTAAGATAAAAATGAAAGTATTAATTTTCCCCTTCCCTAATTTTTTGAAAAGGTATTACTGTAGTTTGTTTTCAGAAAAACAAACAATTAATAATTAATAAATAAATAAATGAATGTAAAGGAAGGTAAGATAAAAATGGTTGAGTCTATTATTGAATTGAATTGGTAGTGATGGGGGTAGGTTTGTTATTGGTATGCCATGGATTGGTGACAGCTTTGGTTGTGATCTCTTTCCTTTGCGGTCGATGGCCAATTTTCGAAGGCACTTTCATTCAACGCATTCACTATTTCCTCACTTTCGGCGCTTACGATTACTTCCTGTACTGTAACTAACTCTCTCTCTCAATCATTCATTTTCATGTTGTTTCACTATTTATTCATCAATCTCACTCACTAATCTCTCAGGCGTTTTGTTGGCGCTGTTTTTGGCTCCAAGTGTACCAATGCTGTTCTTTCTGTTGAATATTATTGCTGCGATCGTCCCAATCCTCTCTTACAGGTTTCAATTTTGAATTTCGATTTCTTCAACTATTGATTGTCAATTGTGATCAATTTAAATTGGTATTAATGTATTCTAAATCTTAAGATCGGTTTTCATTGTGATTCAAACCATCAATCAATTTATTTACTTCTAAATTATCACACTCTCTCCTATTTAGTACTTGAAGTATGTAAATTTAAATATAGGTCTCCAAAACATACTCCCTCCGTCTCAAAATATAGGTTTGTGCGAACTGATCAATTGTCTTGATTTTAATGGTAAAATTAGTTTCATTTACTAAAATACCCTTATTAAGTGGAATAGTTAAGTTAGATGACATTCAATGAATAAGAGTATAATAGTGGGAAAAAAACGTTGCATTGACATTCTAGATAGAGAAAAAAATGTTAAAGAGACGATAATTTTGAGACAGAGAGTATCTATTTAGTCGTACTTAGTAAATATATCTATGTTAGTCTTAGAGTATGAACACAGACATGACACCGTATCTAGTAATAATTTGAGAAAATGAATGATTTGAATGTAATCACATGTCTCAGTGTTGTATCAGTGTTGAACACGACACTCCTTTGATCAGGGGTATCAGTGCTACAAAGGTCTTAGATACTAACATGATGAATTTTCATATACTTTAGCGACTACTTATTTATTTTCACATATTGTTGGGACTGAATTGGAGAGAGAATGATACTTTAGGGACCAAATTGATGGATTATTCAACCAAATTGTGACTCAGGGTTCTGTTTGGATTGACTTATTTTTGCTTATCTACTGACATAAACACTTTCTGAAACTGTTGGAATTATAGAAATAGCTTATGGCATGTCCTAGCCTATTTTCAGATTATTTTTATAAGCTCTCTAGGATAGCTTATGAAAACAACTTGGAGCTTATATGAAAACAATTTGACTTTATTTTATCTTTTGTTGTAGAAATAACTCACATATACATAAGTTATATGATAATCGCTTATACTATCGGTGCTTAATTAAGTTGTTTATCCAAACAGGGCCCAAAACAGGGGCATTATACCTCATGAATTTGTTATAAGAAAATCTTAGAACGTTTTTTTAAACATCATTTTGTGGTGTTCTCTGTTGGTTTGATAAATAAATTTGTGTTAATTGCAGATCATATATCTTGTGATAATCAGCTTTACATATTATTTTGCCGTCAACTCTTCCTTTGCCTATATCCCTGGATACTATTTAAGTGCAACTCACAAGTAGGGTACCCGACACGCCGTTATTGTACTCTTTTCTTGATTTATGTATTCTTCAGCATTATTCTATCCTGAATTCTGTTAGACCTTAGGTACACAAGCTTCTTCGCAGCTGCTGTTGGAATTCTGCTCTTTCTTTTGACCAGCTTTACTGATCCTGGGACAATAAAGGCTGAGAATGTTTCTCAATATCTTGCTGCTTATCCTTATGATAATATCATTTTTTCAGAGAAAGAATGTTCCACTTGCAAAATTCCAAAGTGAGTTTGCTGCTAGTGTTAAATTTGGTGAAATATTAGTTAAATCTACTTATAATATTGTCTTAATTTTGTTTACAGACCTGCTAGATCAAAGCATTGCAGCATTTGTGATCGCTGTGTTGCACGATTTGACCATCACTGTGGATGGATGGTTAGTAATCTTTGAAATTTTCCTTCTTTATAGGGTCACTTAAGCGACTCTTAATAAATAAATCATCTGTTTATTTTAGATTTTACTAAATGTTTTTTTACTTGCAGAATAATTGCATAGGGGAGAGAAACACTCGATATTTCATGGCTTTTCTTTTATGGTGAGCTCTATATGTGGTGCATCTGTTTGTTATTGATAAGTTTTGTAACAGAAAGTGGAAACTTTTTAGAACTTCAAACAATGAATACACAAACACACAGATCAACATAACTGTCCTCGTCCTACCGCATGACTGCCCCAGTACACAATTAAACAACTAATCAATCACTTTCTTACCATATAACTTCCTTAATACTTATTCTGCCCCTATTATTTTCTTATGGGAAATGCTAGCAGTGCCCCCGGGACACTCTTTAAGCACCTTAAATAGTAAGTTTTATGAAAATTTGTGTATTCAATGCATTGGAAATTGAAGTATTTGACATTTTTAAAGAATGATTTCGTAATTTGTAATCCTTAAAGAGTGCCACATTAGTAGAAATGTGGAACCTGCTATAACCAGTCATATTAGGAAGTCCACAATGGACCTTAAAGAAAGGGGACCGAATTAGGGGCTCCTGTGAAATTCAATTTTAGATGTGAAACAAAAATCCCCATAAATTGTGTTTTTACTTAAATTGTTTCGCTTACATATATTAGGTAAAATAGATATTAAAAATCTAAGTCATTTCTAATTTCTCATAGTACTACAAATTTTAGTGGCTGATTTCTGCTGTGGCATTGATATGATATCCAATACAGTATGCATTTTCATTTTAGGCTCCATTCTTATTTGTGATTTTTTCGTGTCTTGTAGGCATTTCCTTCTATGTATGTATGGAACAGTTCTCATAGGTTTAATTCTCGCAGGAAGACTAAAAGAATTAAAAGTTGTCTATATTCTAACAGGTAATATAGATTTGCAAGTAAATATTTGTGTGAAGATTGAATTGTATCTTTTACTGTTTTTGATTCTTCTTTTCTTATCTTAACTTTGCAGTTTATTATGGAATTGAAAATTCATTTTGGGATTTAGCTCCCCATGTTGTACAGGTGAGGTTTTTCTTACTCGTTGATTGTCATATGTTTCTATATTTTTTTTCTTCCTATTTTCCATTTTGTGGTCAATGATATGTTATTATCATGCAGTGGTTATTGGGATCCTACAACACTCAGATTCTTCTTATAGTTTTCGTTGCAATTGTTGGGATGCTGTTAGGCGGATTCTTCGGTTACCATGCAAAGCTTTGCCTTAGTAACACTACCACTAATGAGGTACTTTCTACATCTGGCCTTGAAATGACTATGTAAGTAAATTCTAGTAAATTAGGAGGATCCAGAAAGTAGCAAGCCATACTCTCCTTTGTTCATTCAAAACAAAAATCCCTATAACATCAGTGATCTCATTACTATGGCTATAATTAGTTGAGTTAAATATGTATGGATAAACTAAACAAAACAAAAATATGTATGGATACCGCTATGTCCGTTATTTGTAAGAAAATGCTAAGCATAATACATGATTTGGAAGTTGGCATCAACTGAGATTATAGAAAGATATTTACATTATGACAAAATGACATCTTCGCTGGAGCTTTCCAGTTTAAATCCTGCTGCAATTTGATGAGAATTAGATTGTTTGATCTCTGTTTATATGTATGTGTGTTTTCCCTTTCTCTGCATCTTGTTTATTTAGAGGGGAAATACCGCTTATCAGAAGCACTAGTTATACCACGAACATGGAACTCAATGCAGCTAATGGCTTCTTTCTGTATTGCAGACCTTCAAGTGGCAAGACTACATGGACTGGCAGAGAAAGTTAAAAGAAGCGCAGGCCAGTGCTGCAGCGCTAAAACAAAGTATCAGTGGAATGAACAGTGAAAAACAATCGTTGTCAAGCAACAAATGGAAAGCATTTTTTCAAAGATCACCTCTGGAGGATGTGGTAGTTGTTAAGAATAATGTTTACAATAAAGGTTTCTTGCACAATTTTTGGGAGGTTATTTCCCCTCTCTCTACAAGGCAGTCCTTTACGAAAACAAAGTTGAAATCCAACTGAGTATGCGCGTTTCCTTTTGGCTATTAAAGGTCTTGGTAGCTGGCTAGTTGCACTTAAATTTGAATGGGCATGTCTCTCTACTGTTTAG

Protein sequence

>MS.gene072430.t1

MHGVCVGVGLPSSLGQPKLARVRIQCSTKVSSSRQQLLESVDKELTKGDDRAALALVKDLQGKPNGLQCFGAARQVPQRLYTLDELKLNGIEAMSLLSPVDTTLGSIERNLLIAAIVGGVAAWNVFGISQQQIFYISLGLLFLWTLDLVSFGGGLGSLVVDTIGHKFSQKYHNRVTQHEAGHFLIAYLVGILPKGYTLSSLDGLMKEGSLNIQAGTAFVDFEFLEEVNSGKVSATTLNKFSCIALAGVCTEYLIYGFSEGGLDDIRKLDSLLNGLGFTQKKADSQVRWSVLNTVLLLRRHEAARSKLAEAMSLGSSIIYLVIISFTYYFAVNSSFAYIPGYYLSATHKYTSFFAAAVGILLFLLTSFTDPGTIKAENVSQYLAAYPYDNIIFSEKECSTCKIPKPARSKHCSICDRCVARFDHHCGWMNNCIGERNTRYFMAFLLWHFLLCMYGTVLIGLILAGRLKELKVVYILTVYYGIENSFWDLAPHVVQWLLGSYNTQILLIVFVAIVGMLLGGFFGYHAKLCLSNTTTNETFKWQDYMDWQRKLKEAQASAAALKQSISGMNSEKQSLSSNKWKAFFQRSPLEDVVVVKNNVYNKGLGSWLVALKFEWACLSTV