Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene09660.t1 | XP_003611469.1 | 95.8 | 474 | 19 | 1 | 1 | 473 | 1 | 474 | 5.00E-240 | 840.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene09660.t1 | Q9LQK7 | 56.0 | 466 | 194 | 4 | 13 | 468 | 11 | 475 | 5.1e-140 | 499.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene09660.t1 | G7JZX3 | 95.8 | 474 | 19 | 1 | 1 | 473 | 1 | 474 | 3.6e-240 | 840.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049170 | MS.gene09660 | 0.825297 | 5.06E-54 | -1.69E-46 |
| MS.gene049351 | MS.gene09660 | 0.837761 | 4.30E-57 | -1.69E-46 |
| MS.gene049356 | MS.gene09660 | 0.813694 | 2.25E-51 | -1.69E-46 |
| MS.gene049389 | MS.gene09660 | 0.813263 | 2.80E-51 | -1.69E-46 |
| MS.gene049758 | MS.gene09660 | 0.862358 | 5.36E-64 | -1.69E-46 |
| MS.gene050099 | MS.gene09660 | 0.815916 | 7.24E-52 | -1.69E-46 |
| MS.gene050301 | MS.gene09660 | 0.884066 | 2.63E-71 | -1.69E-46 |
| MS.gene050397 | MS.gene09660 | 0.808727 | 2.69E-50 | -1.69E-46 |
| MS.gene050432 | MS.gene09660 | 0.832482 | 9.22E-56 | -1.69E-46 |
| MS.gene050464 | MS.gene09660 | 0.807305 | 5.39E-50 | -1.69E-46 |
| MS.gene050529 | MS.gene09660 | 0.832025 | 1.20E-55 | -1.69E-46 |
| MS.gene050593 | MS.gene09660 | 0.804041 | 2.61E-49 | -1.69E-46 |
| MS.gene050625 | MS.gene09660 | 0.803985 | 2.68E-49 | -1.69E-46 |
| MS.gene050670 | MS.gene09660 | 0.878726 | 2.22E-69 | -1.69E-46 |
| MS.gene050812 | MS.gene09660 | 0.825938 | 3.57E-54 | -1.69E-46 |
| MS.gene05101 | MS.gene09660 | 0.820044 | 8.44E-53 | -1.69E-46 |
| MS.gene05105 | MS.gene09660 | 0.849461 | 3.19E-60 | -1.69E-46 |
| MS.gene051360 | MS.gene09660 | 0.828105 | 1.08E-54 | -1.69E-46 |
| MS.gene051387 | MS.gene09660 | 0.837307 | 5.62E-57 | -1.69E-46 |
| MS.gene051471 | MS.gene09660 | 0.818094 | 2.34E-52 | -1.69E-46 |
| MS.gene051525 | MS.gene09660 | 0.825804 | 3.84E-54 | -1.69E-46 |
| MS.gene051582 | MS.gene09660 | 0.868493 | 6.27E-66 | -1.69E-46 |
| MS.gene051666 | MS.gene09660 | 0.827642 | 1.40E-54 | -1.69E-46 |
| MS.gene051860 | MS.gene09660 | 0.824559 | 7.56E-54 | -1.69E-46 |
| MS.gene052011 | MS.gene09660 | -0.803373 | 3.60E-49 | -1.69E-46 |
| MS.gene052077 | MS.gene09660 | 0.810404 | 1.17E-50 | -1.69E-46 |
| MS.gene052078 | MS.gene09660 | 0.840135 | 1.04E-57 | -1.69E-46 |
| MS.gene052188 | MS.gene09660 | 0.877667 | 5.23E-69 | -1.69E-46 |
| MS.gene052253 | MS.gene09660 | 0.8407 | 7.43E-58 | -1.69E-46 |
| MS.gene052310 | MS.gene09660 | 0.854721 | 1.02E-61 | -1.69E-46 |
| MS.gene052322 | MS.gene09660 | 0.8216 | 3.70E-53 | -1.69E-46 |
| MS.gene052326 | MS.gene09660 | 0.805959 | 1.04E-49 | -1.69E-46 |
| MS.gene052340 | MS.gene09660 | 0.85478 | 9.80E-62 | -1.69E-46 |
| MS.gene052481 | MS.gene09660 | 0.81881 | 1.61E-52 | -1.69E-46 |
| MS.gene052485 | MS.gene09660 | 0.846725 | 1.81E-59 | -1.69E-46 |
| MS.gene053103 | MS.gene09660 | 0.823767 | 1.16E-53 | -1.69E-46 |
| MS.gene053107 | MS.gene09660 | 0.804826 | 1.79E-49 | -1.69E-46 |
| MS.gene053169 | MS.gene09660 | 0.803743 | 3.01E-49 | -1.69E-46 |
| MS.gene053209 | MS.gene09660 | 0.861372 | 1.07E-63 | -1.69E-46 |
| MS.gene053557 | MS.gene09660 | 0.817122 | 3.88E-52 | -1.69E-46 |
| MS.gene053836 | MS.gene09660 | 0.871327 | 7.43E-67 | -1.69E-46 |
| MS.gene053928 | MS.gene09660 | 0.831704 | 1.44E-55 | -1.69E-46 |
| MS.gene054123 | MS.gene09660 | 0.831844 | 1.33E-55 | -1.69E-46 |
| MS.gene054556 | MS.gene09660 | 0.830365 | 3.06E-55 | -1.69E-46 |
| MS.gene05455 | MS.gene09660 | 0.805891 | 1.07E-49 | -1.69E-46 |
| MS.gene054917 | MS.gene09660 | 0.804009 | 2.65E-49 | -1.69E-46 |
| MS.gene054930 | MS.gene09660 | 0.803335 | 3.66E-49 | -1.69E-46 |
| MS.gene055116 | MS.gene09660 | 0.859323 | 4.48E-63 | -1.69E-46 |
| MS.gene055277 | MS.gene09660 | 0.837663 | 4.55E-57 | -1.69E-46 |
| MS.gene055390 | MS.gene09660 | 0.821312 | 4.32E-53 | -1.69E-46 |
| MS.gene055422 | MS.gene09660 | 0.866332 | 3.08E-65 | -1.69E-46 |
| MS.gene055428 | MS.gene09660 | 0.846392 | 2.24E-59 | -1.69E-46 |
| MS.gene05553 | MS.gene09660 | 0.823297 | 1.49E-53 | -1.69E-46 |
| MS.gene055564 | MS.gene09660 | 0.808198 | 3.49E-50 | -1.69E-46 |
| MS.gene055712 | MS.gene09660 | 0.808235 | 3.42E-50 | -1.69E-46 |
| MS.gene055859 | MS.gene09660 | 0.85012 | 2.08E-60 | -1.69E-46 |
| MS.gene05602 | MS.gene09660 | 0.843524 | 1.33E-58 | -1.69E-46 |
| MS.gene056407 | MS.gene09660 | 0.901589 | 2.30E-78 | -1.69E-46 |
| MS.gene056410 | MS.gene09660 | 0.841694 | 4.07E-58 | -1.69E-46 |
| MS.gene056511 | MS.gene09660 | 0.826002 | 3.44E-54 | -1.69E-46 |
| MS.gene056612 | MS.gene09660 | 0.820377 | 7.08E-53 | -1.69E-46 |
| MS.gene056659 | MS.gene09660 | 0.810444 | 1.15E-50 | -1.69E-46 |
| MS.gene056796 | MS.gene09660 | 0.838545 | 2.70E-57 | -1.69E-46 |
| MS.gene056902 | MS.gene09660 | 0.805755 | 1.15E-49 | -1.69E-46 |
| MS.gene057011 | MS.gene09660 | 0.817479 | 3.23E-52 | -1.69E-46 |
| MS.gene05702 | MS.gene09660 | 0.816309 | 5.91E-52 | -1.69E-46 |
| MS.gene057121 | MS.gene09660 | 0.814425 | 1.55E-51 | -1.69E-46 |
| MS.gene057124 | MS.gene09660 | 0.817401 | 3.36E-52 | -1.69E-46 |
| MS.gene057146 | MS.gene09660 | 0.807632 | 4.60E-50 | -1.69E-46 |
| MS.gene057448 | MS.gene09660 | 0.856658 | 2.77E-62 | -1.69E-46 |
| MS.gene057449 | MS.gene09660 | 0.845269 | 4.51E-59 | -1.69E-46 |
| MS.gene057450 | MS.gene09660 | 0.860055 | 2.70E-63 | -1.69E-46 |
| MS.gene057469 | MS.gene09660 | 0.809756 | 1.62E-50 | -1.69E-46 |
| MS.gene057749 | MS.gene09660 | 0.808685 | 2.74E-50 | -1.69E-46 |
| MS.gene057823 | MS.gene09660 | 0.812312 | 4.52E-51 | -1.69E-46 |
| MS.gene058002 | MS.gene09660 | 0.86802 | 8.90E-66 | -1.69E-46 |
| MS.gene058007 | MS.gene09660 | 0.812023 | 5.22E-51 | -1.69E-46 |
| MS.gene058082 | MS.gene09660 | 0.857936 | 1.16E-62 | -1.69E-46 |
| MS.gene05811 | MS.gene09660 | 0.872393 | 3.29E-67 | -1.69E-46 |
| MS.gene058142 | MS.gene09660 | 0.837914 | 3.92E-57 | -1.69E-46 |
| MS.gene058233 | MS.gene09660 | 0.805021 | 1.63E-49 | -1.69E-46 |
| MS.gene058276 | MS.gene09660 | 0.833755 | 4.44E-56 | -1.69E-46 |
| MS.gene058293 | MS.gene09660 | 0.880716 | 4.37E-70 | -1.69E-46 |
| MS.gene058365 | MS.gene09660 | 0.826265 | 2.98E-54 | -1.69E-46 |
| MS.gene05842 | MS.gene09660 | 0.802164 | 6.39E-49 | -1.69E-46 |
| MS.gene058660 | MS.gene09660 | 0.852461 | 4.55E-61 | -1.69E-46 |
| MS.gene058700 | MS.gene09660 | 0.849634 | 2.85E-60 | -1.69E-46 |
| MS.gene058710 | MS.gene09660 | 0.810151 | 1.33E-50 | -1.69E-46 |
| MS.gene058787 | MS.gene09660 | 0.823803 | 1.14E-53 | -1.69E-46 |
| MS.gene058845 | MS.gene09660 | 0.804919 | 1.71E-49 | -1.69E-46 |
| MS.gene05886 | MS.gene09660 | 0.820489 | 6.68E-53 | -1.69E-46 |
| MS.gene058993 | MS.gene09660 | 0.802493 | 5.47E-49 | -1.69E-46 |
| MS.gene05907 | MS.gene09660 | 0.866177 | 3.45E-65 | -1.69E-46 |
| MS.gene059141 | MS.gene09660 | 0.815533 | 8.81E-52 | -1.69E-46 |
| MS.gene059285 | MS.gene09660 | 0.803876 | 2.83E-49 | -1.69E-46 |
| MS.gene059342 | MS.gene09660 | 0.811406 | 7.11E-51 | -1.69E-46 |
| MS.gene059420 | MS.gene09660 | 0.82588 | 3.68E-54 | -1.69E-46 |
| MS.gene059518 | MS.gene09660 | 0.820059 | 8.38E-53 | -1.69E-46 |
| MS.gene059536 | MS.gene09660 | 0.805168 | 1.52E-49 | -1.69E-46 |
| MS.gene059597 | MS.gene09660 | 0.83248 | 9.23E-56 | -1.69E-46 |
| MS.gene05959 | MS.gene09660 | 0.841382 | 4.92E-58 | -1.69E-46 |
| MS.gene059676 | MS.gene09660 | 0.9007 | 5.63E-78 | -1.69E-46 |
| MS.gene059688 | MS.gene09660 | 0.881066 | 3.27E-70 | -1.69E-46 |
| MS.gene059692 | MS.gene09660 | 0.878254 | 3.26E-69 | -1.69E-46 |
| MS.gene059695 | MS.gene09660 | 0.879555 | 1.13E-69 | -1.69E-46 |
| MS.gene05984 | MS.gene09660 | 0.865996 | 3.94E-65 | -1.69E-46 |
| MS.gene059894 | MS.gene09660 | 0.82004 | 8.46E-53 | -1.69E-46 |
| MS.gene059899 | MS.gene09660 | 0.803021 | 4.25E-49 | -1.69E-46 |
| MS.gene059960 | MS.gene09660 | 0.810581 | 1.07E-50 | -1.69E-46 |
| MS.gene060403 | MS.gene09660 | 0.858915 | 5.93E-63 | -1.69E-46 |
| MS.gene060407 | MS.gene09660 | 0.809502 | 1.83E-50 | -1.69E-46 |
| MS.gene060837 | MS.gene09660 | 0.838956 | 2.11E-57 | -1.69E-46 |
| MS.gene06090 | MS.gene09660 | 0.852996 | 3.20E-61 | -1.69E-46 |
| MS.gene061049 | MS.gene09660 | 0.834783 | 2.45E-56 | -1.69E-46 |
| MS.gene061051 | MS.gene09660 | -0.83734 | 5.51E-57 | -1.69E-46 |
| MS.gene061154 | MS.gene09660 | 0.863816 | 1.90E-64 | -1.69E-46 |
| MS.gene061159 | MS.gene09660 | 0.800259 | 1.57E-48 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene09660.t1 | MTR_5g014290 | 95.570 | 474 | 20 | 1 | 1 | 473 | 1 | 474 | 0.0 | 889 |
| MS.gene09660.t1 | MTR_8g019500 | 25.559 | 313 | 201 | 9 | 170 | 468 | 243 | 537 | 2.96e-18 | 87.8 |
| MS.gene09660.t1 | MTR_7g038720 | 25.240 | 313 | 202 | 9 | 170 | 468 | 244 | 538 | 6.14e-18 | 87.0 |
| MS.gene09660.t1 | MTR_7g030030 | 25.240 | 313 | 202 | 9 | 170 | 468 | 244 | 538 | 6.14e-18 | 87.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene09660.t1 | AT1G32500 | 58.974 | 468 | 177 | 6 | 13 | 468 | 11 | 475 | 0.0 | 544 |
| MS.gene09660.t1 | AT4G04770 | 26.263 | 297 | 194 | 7 | 170 | 453 | 254 | 538 | 1.15e-19 | 92.4 |
Find 125 sgRNAs with CRISPR-Local
Find 259 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGATTGGGGCGGGGAGGATT+TGG | 0.223915 | 5.2:+6254878 | None:intergenic |
| CGGTGGTGGTGGTTGGGATT+GGG | 0.227177 | 5.2:+6254863 | None:intergenic |
| AAGTCAGATTAAAAGTTTAT+TGG | 0.227386 | 5.2:-6251920 | MS.gene09660:CDS |
| TGGACGGTGGAGATTTATTT+TGG | 0.233451 | 5.2:-6254684 | MS.gene09660:CDS |
| GGTTGAAACTCCGGTTCATT+TGG | 0.289943 | 5.2:-6254602 | MS.gene09660:CDS |
| GCGGTGGTGGTGGTTGGGAT+TGG | 0.297898 | 5.2:+6254862 | None:intergenic |
| TGCTGTTGCTAAGAGGGTTT+TGG | 0.302162 | 5.2:-6254722 | MS.gene09660:CDS |
| GATTGGGGCGGGGAGGATTT+GGG | 0.303645 | 5.2:+6254879 | None:intergenic |
| ACAGAAGTTGGCTTTGTTCC+AGG | 0.315039 | 5.2:+6252055 | None:intergenic |
| TCAGCAATGATTTGGAGATT+TGG | 0.333268 | 5.2:+6252114 | None:intergenic |
| GGAATGATAATGAGTGTTAT+TGG | 0.334871 | 5.2:-6254462 | MS.gene09660:CDS |
| GTGGTGGTTGGGATTGGGGC+GGG | 0.338823 | 5.2:+6254868 | None:intergenic |
| CTATCTCTAATGGAAGAATT+AGG | 0.339561 | 5.2:+6251949 | None:intergenic |
| GTTGAATGTGACTCTGGTTT+TGG | 0.342738 | 5.2:+6255089 | None:intergenic |
| GAACTGATCGGTTGCGGTGG+TGG | 0.347502 | 5.2:+6254849 | None:intergenic |
| AGAAGAAGATGATGGGATTA+TGG | 0.348829 | 5.2:+6255143 | None:intergenic |
| ACGGAAACGTCAAGGTTAAC+AGG | 0.350131 | 5.2:-6253204 | MS.gene09660:intron |
| TTATGTACCGGAGGGTGTTC+AGG | 0.356045 | 5.2:-6254623 | MS.gene09660:CDS |
| ACCTACAATTGTGATCATTT+AGG | 0.356993 | 5.2:+6251889 | None:intergenic |
| TGACGTCATCAGCAATGATT+TGG | 0.358930 | 5.2:+6252106 | None:intergenic |
| GGTGGTGGTGGTTGGGATTG+GGG | 0.359673 | 5.2:+6254864 | None:intergenic |
| CGGTTGCGGTGGTGGTGGTT+GGG | 0.369746 | 5.2:+6254857 | None:intergenic |
| TATATCGAATCCGAGGGTTT+TGG | 0.370433 | 5.2:-6254533 | MS.gene09660:CDS |
| GTAAGCACAGGAGGCAAACT+TGG | 0.373309 | 5.2:-6253412 | MS.gene09660:CDS |
| TTATTGGAGTAATGCTGTTT+TGG | 0.374251 | 5.2:-6254446 | MS.gene09660:CDS |
| ACTTCGTACTCTATCTCTAA+TGG | 0.380409 | 5.2:+6251939 | None:intergenic |
| TCGGTTGCGGTGGTGGTGGT+TGG | 0.381302 | 5.2:+6254856 | None:intergenic |
| TGGTGGTTGGGATTGGGGCG+GGG | 0.391272 | 5.2:+6254869 | None:intergenic |
| TTGGAGGTTGTGATTGGGGA+AGG | 0.394788 | 5.2:-6254427 | MS.gene09660:CDS |
| GTTGAAACTCCGGTTCATTT+GGG | 0.396052 | 5.2:-6254601 | MS.gene09660:CDS |
| TTGATTCAGAAACAGCTAGA+AGG | 0.399795 | 5.2:-6252014 | MS.gene09660:CDS |
| TCTTCACAGTAGTCTTGTAT+TGG | 0.400205 | 5.2:-6253299 | MS.gene09660:CDS |
| GATATAGTTGAGGAGTTTGA+AGG | 0.406381 | 5.2:-6254484 | MS.gene09660:CDS |
| TTTGGAATTGGTATCTGGAT+TGG | 0.420346 | 5.2:-6254704 | MS.gene09660:CDS |
| TGTAGGGACGGAGTCTTCTA+AGG | 0.425260 | 5.2:+6255017 | None:intergenic |
| CAAATGGACTTCTGTTCGTC+AGG | 0.432884 | 5.2:-6254350 | MS.gene09660:intron |
| ACATAAACCACCGTCAAATC+CGG | 0.439129 | 5.2:+6254640 | None:intergenic |
| TGGTTGGGATTGGGGCGGGG+AGG | 0.441570 | 5.2:+6254872 | None:intergenic |
| CTAAGACTGTGGAGAGGTTG+TGG | 0.451134 | 5.2:+6254994 | None:intergenic |
| TCAGCGAGGTCGAGAATGAA+TGG | 0.453976 | 5.2:+6255042 | None:intergenic |
| GTCAACGATGCTGACGTGGC+AGG | 0.458522 | 5.2:+6254825 | None:intergenic |
| GATTTGGGAAGAACGGAGGA+AGG | 0.459345 | 5.2:+6254894 | None:intergenic |
| GATAACTCTGTCACTGTGTC+CGG | 0.460261 | 5.2:+6253358 | None:intergenic |
| TGCTTGCCGCGCATATCAAA+TGG | 0.468727 | 5.2:-6254366 | MS.gene09660:CDS |
| CTGATCGGTTGCGGTGGTGG+TGG | 0.471002 | 5.2:+6254852 | None:intergenic |
| GTGCATTGTGGCTCATTCAC+AGG | 0.474620 | 5.2:-6253242 | MS.gene09660:CDS |
| TATGCTCAGCAGACAGATGC+TGG | 0.480588 | 5.2:-6252189 | MS.gene09660:CDS |
| TTGGTGGTGGTGGAGAATGG+TGG | 0.480612 | 5.2:-6254514 | MS.gene09660:CDS |
| GAGGTTGTGATTGGGGAAGG+TGG | 0.480973 | 5.2:-6254424 | MS.gene09660:CDS |
| CTGAATCAATGCCACGTGCT+TGG | 0.483064 | 5.2:+6252028 | None:intergenic |
| GATGATGAAGAAGAAGATGA+TGG | 0.495014 | 5.2:+6255135 | None:intergenic |
| TGTGATTGGGGAAGGTGGCA+AGG | 0.496641 | 5.2:-6254419 | MS.gene09660:CDS |
| TTGCACGAGGTTCAAGAAGA+AGG | 0.497992 | 5.2:+6252151 | None:intergenic |
| TCAACGATGCTGACGTGGCA+GGG | 0.498735 | 5.2:+6254826 | None:intergenic |
| TGAACGGTGCTGTTGCTAAG+AGG | 0.498829 | 5.2:-6254729 | MS.gene09660:CDS |
| GGTGGTGGTTGGGATTGGGG+CGG | 0.500096 | 5.2:+6254867 | None:intergenic |
| GCAGGGGAACTGATCGGTTG+CGG | 0.501772 | 5.2:+6254843 | None:intergenic |
| ACAATCAACGTCGAAAATCT+CGG | 0.501795 | 5.2:-6254791 | MS.gene09660:CDS |
| AATCTCTTCTCTCTTCTCCA+TGG | 0.503098 | 5.2:-6254957 | MS.gene09660:CDS |
| AATGGGTGCACCGGATTTGA+CGG | 0.505675 | 5.2:-6254650 | MS.gene09660:CDS |
| AATTGTGATCATTTAGGAGA+TGG | 0.509008 | 5.2:+6251895 | None:intergenic |
| GGTCACTTATTGCAGCTCCA+TGG | 0.511189 | 5.2:+6252076 | None:intergenic |
| TCATATCAAACAACTAGGTC+CGG | 0.512491 | 5.2:-6253377 | MS.gene09660:CDS |
| GATACATAACCCAAATGAAC+CGG | 0.513043 | 5.2:+6254592 | None:intergenic |
| GTCACTTATTGCAGCTCCAT+GGG | 0.518219 | 5.2:+6252077 | None:intergenic |
| TGCGTTGTTGAATGTGACTC+TGG | 0.519290 | 5.2:+6255083 | None:intergenic |
| TGTATCGTTGCAGAGTAGTA+AGG | 0.522175 | 5.2:-6254575 | MS.gene09660:CDS |
| GAACGGTGCTGTTGCTAAGA+GGG | 0.523036 | 5.2:-6254728 | MS.gene09660:CDS |
| TGCCACGTCAGCATCGTTGA+CGG | 0.523705 | 5.2:-6254823 | MS.gene09660:CDS |
| GTGCTTGGAAATACAGAAGT+TGG | 0.533653 | 5.2:+6252043 | None:intergenic |
| GAGAAGTCGTTGAAGCGAAA+AGG | 0.537869 | 5.2:+6254916 | None:intergenic |
| TTTGACGGTGGTTTATGTAC+CGG | 0.541831 | 5.2:-6254635 | MS.gene09660:CDS |
| CTGTGGAGAGGTTGTGGTGT+AGG | 0.543065 | 5.2:+6255000 | None:intergenic |
| GTCTTGTATTGGATCATCCA+AGG | 0.548517 | 5.2:-6253288 | MS.gene09660:CDS |
| TGATTCAGAAACAGCTAGAA+GGG | 0.550672 | 5.2:-6252013 | MS.gene09660:CDS |
| GGTAATTTGTCAAATTTGAA+CGG | 0.553286 | 5.2:-6254745 | MS.gene09660:CDS |
| CGGGGAGGATTTGGGAAGAA+CGG | 0.553484 | 5.2:+6254887 | None:intergenic |
| GGGGAACTGATCGGTTGCGG+TGG | 0.556807 | 5.2:+6254846 | None:intergenic |
| GAGAGGTTGTGGTGTAGGGA+CGG | 0.557143 | 5.2:+6255005 | None:intergenic |
| TCAACTTTGCACTTGTCAGT+TGG | 0.557345 | 5.2:-6253337 | MS.gene09660:CDS |
| GTTTCAACCTGAACACCCTC+CGG | 0.557730 | 5.2:+6254616 | None:intergenic |
| ATCTATCACTTCCCCTCCAA+AGG | 0.558266 | 5.2:+6251978 | None:intergenic |
| TCTTGTATTGGATCATCCAA+GGG | 0.561446 | 5.2:-6253287 | MS.gene09660:CDS |
| TGTGGAGAGGTTGTGGTGTA+GGG | 0.564194 | 5.2:+6255001 | None:intergenic |
| GCACAGGAGGCAAACTTGGA+AGG | 0.565571 | 5.2:-6253408 | MS.gene09660:CDS |
| CAACGATGCTGACGTGGCAG+GGG | 0.566271 | 5.2:+6254827 | None:intergenic |
| ATCTGACGGGAATAACCCCT+TGG | 0.566453 | 5.2:+6253271 | None:intergenic |
| TGCATTGTGGCTCATTCACA+GGG | 0.566881 | 5.2:-6253241 | MS.gene09660:CDS |
| CAATGCACTTATGAATCTGA+CGG | 0.571017 | 5.2:+6253257 | None:intergenic |
| ATATAGTTGAGGAGTTTGAA+GGG | 0.571311 | 5.2:-6254483 | MS.gene09660:CDS |
| GGGTGTTCAGGTTGAAACTC+CGG | 0.571357 | 5.2:-6254611 | MS.gene09660:CDS |
| AAGAAGCTTCTCTAAGACTG+TGG | 0.574255 | 5.2:+6254983 | None:intergenic |
| ATGATGAAGAAGAAGATGAT+GGG | 0.577329 | 5.2:+6255136 | None:intergenic |
| GAGCTTACAGAAGTAAGCAC+AGG | 0.578828 | 5.2:-6253424 | MS.gene09660:CDS |
| TCCACCACCACCAAAACCCT+CGG | 0.581717 | 5.2:+6254523 | None:intergenic |
| CAGCGAGGTCGAGAATGAAT+GGG | 0.582930 | 5.2:+6255043 | None:intergenic |
| GTCCGTCAACGATGCTGACG+TGG | 0.585668 | 5.2:+6254821 | None:intergenic |
| AATGCACTTATGAATCTGAC+GGG | 0.586814 | 5.2:+6253258 | None:intergenic |
| GGTGGTGGAGAATGGTGGTG+AGG | 0.595224 | 5.2:-6254509 | MS.gene09660:CDS |
| GAATTGGTATCTGGATTGGA+CGG | 0.597060 | 5.2:-6254700 | MS.gene09660:CDS |
| TGGAGCTGCAATAAGTGACC+TGG | 0.598264 | 5.2:-6252073 | MS.gene09660:CDS |
| GACGGTGGTTTATGTACCGG+AGG | 0.598657 | 5.2:-6254632 | MS.gene09660:CDS |
| GATTAATGGAATGGGTGCAC+CGG | 0.603821 | 5.2:-6254659 | MS.gene09660:CDS |
| AGATGTATATATCGAATCCG+AGG | 0.610367 | 5.2:-6254540 | MS.gene09660:CDS |
| CTTACAGAAGTAAGCACAGG+AGG | 0.618684 | 5.2:-6253421 | MS.gene09660:CDS |
| AATCTTCATATCAAACAACT+AGG | 0.623363 | 5.2:-6253382 | MS.gene09660:CDS |
| ATTATGGAGTTGAATGCTGC+GGG | 0.626580 | 5.2:+6255159 | None:intergenic |
| CTTCTGTATTTCCAAGCACG+TGG | 0.628093 | 5.2:-6252039 | MS.gene09660:CDS |
| GATGACGTCAAGTGTTCCCA+TGG | 0.629397 | 5.2:-6252093 | MS.gene09660:CDS |
| ACGGTGGTTTATGTACCGGA+GGG | 0.631873 | 5.2:-6254631 | MS.gene09660:CDS |
| GGGTGCACCGGATTTGACGG+TGG | 0.641084 | 5.2:-6254647 | MS.gene09660:CDS |
| GGAGGATTTGGGAAGAACGG+AGG | 0.648249 | 5.2:+6254890 | None:intergenic |
| AGAAGTCCATTTGATATGCG+CGG | 0.652340 | 5.2:+6254360 | None:intergenic |
| GTCAGTTGGTAATCAAACAC+AGG | 0.657011 | 5.2:-6253323 | MS.gene09660:CDS |
| GACGTGGCAGGGGAACTGAT+CGG | 0.662394 | 5.2:+6254837 | None:intergenic |
| TCGTTGCAGAGTAGTAAGGA+AGG | 0.668370 | 5.2:-6254571 | MS.gene09660:CDS |
| GATGTATATATCGAATCCGA+GGG | 0.671373 | 5.2:-6254539 | MS.gene09660:CDS |
| TCAGATTCATAAGTGCATTG+TGG | 0.677608 | 5.2:-6253254 | MS.gene09660:CDS |
| TGGTGAGGTTGATATAGTTG+AGG | 0.690189 | 5.2:-6254494 | MS.gene09660:CDS |
| CTTGTATTGGATCATCCAAG+GGG | 0.694144 | 5.2:-6253286 | MS.gene09660:CDS |
| TTGGTATCTGGATTGGACGG+TGG | 0.694952 | 5.2:-6254697 | MS.gene09660:CDS |
| TTAACATTTACAGTTGCACG+AGG | 0.704403 | 5.2:+6252138 | None:intergenic |
| GATTATGGAGTTGAATGCTG+CGG | 0.713690 | 5.2:+6255158 | None:intergenic |
| GCTTCTCTAAGACTGTGGAG+AGG | 0.716052 | 5.2:+6254988 | None:intergenic |
| AGTCTTCTAAGGTTTCAGCG+AGG | 0.795490 | 5.2:+6255028 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAGTTGTTATAGATTATAA+AGG | + | chr5.2:6253314-6253333 | None:intergenic | 15.0% |
| !! | ATTACTAACAAAATTAACAT+TGG | + | chr5.2:6254168-6254187 | None:intergenic | 15.0% |
| !! | TAAACATATATACAATTGTA+AGG | + | chr5.2:6254033-6254052 | None:intergenic | 15.0% |
| !! | TACAATTGTATATATGTTTA+CGG | - | chr5.2:6254033-6254052 | MS.gene09660:intron | 15.0% |
| !!! | AAATTTTTATTTATTGAGCT+AGG | - | chr5.2:6254791-6254810 | MS.gene09660:CDS | 15.0% |
| !! | AAGAAATGTGAAAAAAACAA+AGG | - | chr5.2:6254739-6254758 | MS.gene09660:CDS | 20.0% |
| !! | AAGTCAGATTAAAAGTTTAT+TGG | - | chr5.2:6255163-6255182 | MS.gene09660:CDS | 20.0% |
| !! | AAGTCATTAGATTATATTGT+GGG | + | chr5.2:6254456-6254475 | None:intergenic | 20.0% |
| !! | AAGTTAGTAGTATTAATTAG+GGG | + | chr5.2:6254614-6254633 | None:intergenic | 20.0% |
| !! | ACAAGTTAGTAGTATTAATT+AGG | + | chr5.2:6254616-6254635 | None:intergenic | 20.0% |
| !! | AGAAATGTGAAAAAAACAAA+GGG | - | chr5.2:6254740-6254759 | MS.gene09660:CDS | 20.0% |
| !! | ATTGTTAGCATTAATTATAC+TGG | - | chr5.2:6254186-6254205 | MS.gene09660:intron | 20.0% |
| !! | CAAGTTAGTAGTATTAATTA+GGG | + | chr5.2:6254615-6254634 | None:intergenic | 20.0% |
| !! | GAGTATGAATTTATTGTTTA+TGG | - | chr5.2:6252893-6252912 | MS.gene09660:intron | 20.0% |
| !! | TAAGTCATTAGATTATATTG+TGG | + | chr5.2:6254457-6254476 | None:intergenic | 20.0% |
| !! | TAGAAAAAATTTGACATGAT+TGG | - | chr5.2:6253594-6253613 | MS.gene09660:intron | 20.0% |
| !! | TTATTGTTTATGGAATGAAA+AGG | - | chr5.2:6252903-6252922 | MS.gene09660:intron | 20.0% |
| !! | TTCTTACATAAATGACTAAA+AGG | + | chr5.2:6254321-6254340 | None:intergenic | 20.0% |
| !! | TTGTTAGCATTAATTATACT+GGG | - | chr5.2:6254187-6254206 | MS.gene09660:intron | 20.0% |
| !! | TTTAATACACATACAAACAA+AGG | - | chr5.2:6254657-6254676 | MS.gene09660:CDS | 20.0% |
| ! | AATCTTCATATCAAACAACT+AGG | - | chr5.2:6253701-6253720 | MS.gene09660:intron | 25.0% |
| ! | AGTCATTAGATTATATTGTG+GGG | + | chr5.2:6254455-6254474 | None:intergenic | 25.0% |
| ! | AGTGTATTACTGATATAAAG+TGG | + | chr5.2:6254861-6254880 | None:intergenic | 25.0% |
| ! | GGACAAAAATAAAGTCAAAT+GGG | + | chr5.2:6254532-6254551 | None:intergenic | 25.0% |
| ! | GTTAGAAACTAATCGAAAAT+TGG | + | chr5.2:6253946-6253965 | None:intergenic | 25.0% |
| ! | TAATGGCTAACTATATACAA+AGG | - | chr5.2:6253413-6253432 | MS.gene09660:CDS | 25.0% |
| ! | TATGCAATTCTTAGTGTTAT+AGG | - | chr5.2:6253044-6253063 | MS.gene09660:intron | 25.0% |
| ! | TATGTTGGAATAGTAAAACT+GGG | - | chr5.2:6252927-6252946 | MS.gene09660:intron | 25.0% |
| ! | TATGTTTACGGAGAAATTAA+CGG | - | chr5.2:6254045-6254064 | MS.gene09660:intron | 25.0% |
| ! | TGTGATTGTTAAACATTTAC+AGG | - | chr5.2:6253619-6253638 | MS.gene09660:intron | 25.0% |
| ! | TTAGTGCAAAAATGTTCTTA+TGG | - | chr5.2:6253373-6253392 | MS.gene09660:CDS | 25.0% |
| ! | TTATGTTGGAATAGTAAAAC+TGG | - | chr5.2:6252926-6252945 | MS.gene09660:intron | 25.0% |
| !! | ATTAATTAGGGGTATGTTTA+GGG | + | chr5.2:6254603-6254622 | None:intergenic | 25.0% |
| !! | GCAATTTATCTTTTAGTATC+TGG | - | chr5.2:6253230-6253249 | MS.gene09660:CDS | 25.0% |
| !! | GGTAATTTGTCAAATTTGAA+CGG | - | chr5.2:6252338-6252357 | MS.gene09660:intron | 25.0% |
| !! | GTAATACACTATTCTTGTTT+AGG | - | chr5.2:6254871-6254890 | MS.gene09660:CDS | 25.0% |
| !! | TACAATAACAAGGGTATATA+AGG | + | chr5.2:6254283-6254302 | None:intergenic | 25.0% |
| !! | TATTAATTAGGGGTATGTTT+AGG | + | chr5.2:6254604-6254623 | None:intergenic | 25.0% |
| !!! | GATTTATTTTGGTCGATTAA+TGG | - | chr5.2:6252410-6252429 | MS.gene09660:intron | 25.0% |
| AAATTGCAAGTGATTCCATT+AGG | + | chr5.2:6253217-6253236 | None:intergenic | 30.0% | |
| AATAGTAAAACTGGGTCTAA+AGG | - | chr5.2:6252935-6252954 | MS.gene09660:intron | 30.0% | |
| AATGTGAAAAAAACAAAGGG+AGG | - | chr5.2:6254743-6254762 | MS.gene09660:CDS | 30.0% | |
| ATATAGTTGAGGAGTTTGAA+GGG | - | chr5.2:6252600-6252619 | MS.gene09660:intron | 30.0% | |
| ATGATGAAGAAGAAGATGAT+GGG | + | chr5.2:6251950-6251969 | None:intergenic | 30.0% | |
| ATGCATCTCGTAATTTGAAA+AGG | + | chr5.2:6254568-6254587 | None:intergenic | 30.0% | |
| ATGGAATGAAAAGGTTATGT+TGG | - | chr5.2:6252912-6252931 | MS.gene09660:intron | 30.0% | |
| ATTTATTGAGCTAGGACATA+TGG | - | chr5.2:6254799-6254818 | MS.gene09660:CDS | 30.0% | |
| CAAAAATAAAGTCAAATGGG+TGG | + | chr5.2:6254529-6254548 | None:intergenic | 30.0% | |
| CACACGAAATGCAAAAATAA+AGG | + | chr5.2:6253483-6253502 | None:intergenic | 30.0% | |
| CTATCTCTAATGGAAGAATT+AGG | + | chr5.2:6255137-6255156 | None:intergenic | 30.0% | |
| GCTAACTATATACAAAGGAA+GGG | - | chr5.2:6253418-6253437 | MS.gene09660:CDS | 30.0% | |
| GGATATACGTACAATAACAA+GGG | + | chr5.2:6254292-6254311 | None:intergenic | 30.0% | |
| GGGACAAAAATAAAGTCAAA+TGG | + | chr5.2:6254533-6254552 | None:intergenic | 30.0% | |
| GTGTTATAGGTATAATGTTG+CGG | - | chr5.2:6253057-6253076 | MS.gene09660:intron | 30.0% | |
| GTTATCAAAGAAGTAGTCAT+AGG | + | chr5.2:6252997-6253016 | None:intergenic | 30.0% | |
| TAAATGACTAAAAGGCAGTT+TGG | + | chr5.2:6254313-6254332 | None:intergenic | 30.0% | |
| TACAATTGTAAGGACTTCTT+CGG | + | chr5.2:6254023-6254042 | None:intergenic | 30.0% | |
| TGAAAAGGGGTTTAGATTTA+GGG | + | chr5.2:6254553-6254572 | None:intergenic | 30.0% | |
| TGCATCTCGTAATTTGAAAA+GGG | + | chr5.2:6254567-6254586 | None:intergenic | 30.0% | |
| TGGATATACGTACAATAACA+AGG | + | chr5.2:6254293-6254312 | None:intergenic | 30.0% | |
| TTGAAAAGGGGTTTAGATTT+AGG | + | chr5.2:6254554-6254573 | None:intergenic | 30.0% | |
| ! | AACAATACAAGAGTGGATTT+AGG | - | chr5.2:6253920-6253939 | MS.gene09660:intron | 30.0% |
| ! | AAGGGTATATAAGGTTTGTT+TGG | + | chr5.2:6254274-6254293 | None:intergenic | 30.0% |
| ! | ACTTTTGACGAAGAAGATAA+TGG | - | chr5.2:6253396-6253415 | MS.gene09660:CDS | 30.0% |
| ! | GGAATGATAATGAGTGTTAT+TGG | - | chr5.2:6252621-6252640 | MS.gene09660:intron | 30.0% |
| ! | GTGCTTTTATGTATCAAGAA+TGG | - | chr5.2:6254342-6254361 | MS.gene09660:intron | 30.0% |
| ! | TAATTTTACCTGTCTTGCTA+TGG | - | chr5.2:6254101-6254120 | MS.gene09660:intron | 30.0% |
| ! | TTCTAATTTTTGCCTTTGGA+GGG | - | chr5.2:6255093-6255112 | MS.gene09660:CDS | 30.0% |
| ! | TTTTGGTCGATTAATGGAAT+GGG | - | chr5.2:6252416-6252435 | MS.gene09660:intron | 30.0% |
| !! | ACTACTTCTTTGATAACGAA+GGG | - | chr5.2:6253000-6253019 | MS.gene09660:intron | 30.0% |
| !! | ATTTTGGTCGATTAATGGAA+TGG | - | chr5.2:6252415-6252434 | MS.gene09660:intron | 30.0% |
| !! | TTATTGGAGTAATGCTGTTT+TGG | - | chr5.2:6252637-6252656 | MS.gene09660:intron | 30.0% |
| AACAAAGGGAGGTTACATTA+AGG | - | chr5.2:6254754-6254773 | MS.gene09660:CDS | 35.0% | |
| AATGCACTTATGAATCTGAC+GGG | + | chr5.2:6253828-6253847 | None:intergenic | 35.0% | |
| ACAAAGGGAGGTTACATTAA+GGG | - | chr5.2:6254755-6254774 | MS.gene09660:CDS | 35.0% | |
| ACAATCAACGTCGAAAATCT+CGG | - | chr5.2:6252292-6252311 | MS.gene09660:intron | 35.0% | |
| ACTTCGTACTCTATCTCTAA+TGG | + | chr5.2:6255147-6255166 | None:intergenic | 35.0% | |
| AGATGTATATATCGAATCCG+AGG | - | chr5.2:6252543-6252562 | MS.gene09660:intron | 35.0% | |
| CAAATGGGTGGTTAGATATA+GGG | + | chr5.2:6254517-6254536 | None:intergenic | 35.0% | |
| CAATGCACTTATGAATCTGA+CGG | + | chr5.2:6253829-6253848 | None:intergenic | 35.0% | |
| CTTCTTCGGTTCTTCATAAA+TGG | + | chr5.2:6254009-6254028 | None:intergenic | 35.0% | |
| GATACATAACCCAAATGAAC+CGG | + | chr5.2:6252494-6252513 | None:intergenic | 35.0% | |
| GATATAGTTGAGGAGTTTGA+AGG | - | chr5.2:6252599-6252618 | MS.gene09660:intron | 35.0% | |
| GATGATGAAGAAGAAGATGA+TGG | + | chr5.2:6251951-6251970 | None:intergenic | 35.0% | |
| GATGTATATATCGAATCCGA+GGG | - | chr5.2:6252544-6252563 | MS.gene09660:intron | 35.0% | |
| GCATCTCGTAATTTGAAAAG+GGG | + | chr5.2:6254566-6254585 | None:intergenic | 35.0% | |
| GCATTAATTATACTGGGAGT+AGG | - | chr5.2:6254193-6254212 | MS.gene09660:intron | 35.0% | |
| GGCTAACTATATACAAAGGA+AGG | - | chr5.2:6253417-6253436 | MS.gene09660:CDS | 35.0% | |
| TCAAATGGGTGGTTAGATAT+AGG | + | chr5.2:6254518-6254537 | None:intergenic | 35.0% | |
| TCAGATTCATAAGTGCATTG+TGG | - | chr5.2:6253829-6253848 | MS.gene09660:intron | 35.0% | |
| TCATATCAAACAACTAGGTC+CGG | - | chr5.2:6253706-6253725 | MS.gene09660:intron | 35.0% | |
| TCTTGTATTGGATCATCCAA+GGG | - | chr5.2:6253796-6253815 | MS.gene09660:intron | 35.0% | |
| TGATTCAGAAACAGCTAGAA+GGG | - | chr5.2:6255070-6255089 | MS.gene09660:CDS | 35.0% | |
| TTAACATTTACAGTTGCACG+AGG | + | chr5.2:6254948-6254967 | None:intergenic | 35.0% | |
| TTAGTATCTGGTAGAAGTAG+TGG | - | chr5.2:6253242-6253261 | MS.gene09660:CDS | 35.0% | |
| TTGATTCAGAAACAGCTAGA+AGG | - | chr5.2:6255069-6255088 | MS.gene09660:CDS | 35.0% | |
| TTTGCACAACAATACAAGAG+TGG | - | chr5.2:6253913-6253932 | MS.gene09660:intron | 35.0% | |
| ! | AAAATCTCGGAGTTTTCAGA+TGG | - | chr5.2:6252305-6252324 | MS.gene09660:intron | 35.0% |
| ! | AAATCTCGGAGTTTTCAGAT+GGG | - | chr5.2:6252306-6252325 | MS.gene09660:intron | 35.0% |
| ! | AGTGGCATCATTTTGTCATT+AGG | - | chr5.2:6253260-6253279 | MS.gene09660:CDS | 35.0% |
| ! | AGTTAAAGAGTAGAGTGCTA+AGG | + | chr5.2:6254236-6254255 | None:intergenic | 35.0% |
| ! | ATAAGGTTTGTTTGGTGGTT+GGG | + | chr5.2:6254266-6254285 | None:intergenic | 35.0% |
| ! | GGTATATAAGGTTTGTTTGG+TGG | + | chr5.2:6254271-6254290 | None:intergenic | 35.0% |
| ! | GTTCTAATTTTTGCCTTTGG+AGG | - | chr5.2:6255092-6255111 | MS.gene09660:CDS | 35.0% |
| ! | TATAAGGTTTGTTTGGTGGT+TGG | + | chr5.2:6254267-6254286 | None:intergenic | 35.0% |
| ! | TCAGCAATGATTTGGAGATT+TGG | + | chr5.2:6254972-6254991 | None:intergenic | 35.0% |
| ! | TTTGGAATTGGTATCTGGAT+TGG | - | chr5.2:6252379-6252398 | MS.gene09660:intron | 35.0% |
| !! | AGAAGAAGATGATGGGATTA+TGG | + | chr5.2:6251943-6251962 | None:intergenic | 35.0% |
| !! | AGGGTTCTAATTTTTGCCTT+TGG | - | chr5.2:6255089-6255108 | MS.gene09660:CDS | 35.0% |
| !! | CTACTTCTTTGATAACGAAG+GGG | - | chr5.2:6253001-6253020 | MS.gene09660:intron | 35.0% |
| !! | GACTACTTCTTTGATAACGA+AGG | - | chr5.2:6252999-6253018 | MS.gene09660:intron | 35.0% |
| !! | TCTAATTTTTGCCTTTGGAG+GGG | - | chr5.2:6255094-6255113 | MS.gene09660:CDS | 35.0% |
| !! | TCTTCACAGTAGTCTTGTAT+TGG | - | chr5.2:6253784-6253803 | MS.gene09660:intron | 35.0% |
| !! | TTTTGAGAAGTTACGCAAGA+GGG | - | chr5.2:6253565-6253584 | MS.gene09660:intron | 35.0% |
| !! | TTTTTGAGAAGTTACGCAAG+AGG | - | chr5.2:6253564-6253583 | MS.gene09660:intron | 35.0% |
| AAAGGAAGGGCAATCTAGTT+AGG | - | chr5.2:6253431-6253450 | MS.gene09660:CDS | 40.0% | |
| AAGGGCAATCTAGTTAGGAT+AGG | - | chr5.2:6253436-6253455 | MS.gene09660:CDS | 40.0% | |
| AATCTCTTCTCTCTTCTCCA+TGG | - | chr5.2:6252126-6252145 | MS.gene09660:CDS | 40.0% | |
| ACATAAACCACCGTCAAATC+CGG | + | chr5.2:6252446-6252465 | None:intergenic | 40.0% | |
| AGAAGTCCATTTGATATGCG+CGG | + | chr5.2:6252726-6252745 | None:intergenic | 40.0% | |
| AGCTCATATTCACCGATAAG+TGG | + | chr5.2:6253170-6253189 | None:intergenic | 40.0% | |
| ATTATGGAGTTGAATGCTGC+GGG | + | chr5.2:6251927-6251946 | None:intergenic | 40.0% | |
| CTTGTATTGGATCATCCAAG+GGG | - | chr5.2:6253797-6253816 | MS.gene09660:intron | 40.0% | |
| GATTATGGAGTTGAATGCTG+CGG | + | chr5.2:6251928-6251947 | None:intergenic | 40.0% | |
| GCTCATATTCACCGATAAGT+GGG | + | chr5.2:6253169-6253188 | None:intergenic | 40.0% | |
| GTATCAATCCATAGCAAGAC+AGG | + | chr5.2:6254112-6254131 | None:intergenic | 40.0% | |
| GTCTTGTATTGGATCATCCA+AGG | - | chr5.2:6253795-6253814 | MS.gene09660:intron | 40.0% | |
| GTGCTTGGAAATACAGAAGT+TGG | + | chr5.2:6255043-6255062 | None:intergenic | 40.0% | |
| GTTGAAACTCCGGTTCATTT+GGG | - | chr5.2:6252482-6252501 | MS.gene09660:intron | 40.0% | |
| TCAACTTTGCACTTGTCAGT+TGG | - | chr5.2:6253746-6253765 | MS.gene09660:intron | 40.0% | |
| TGACGTCATCAGCAATGATT+TGG | + | chr5.2:6254980-6254999 | None:intergenic | 40.0% | |
| TGTATCGTTGCAGAGTAGTA+AGG | - | chr5.2:6252508-6252527 | MS.gene09660:intron | 40.0% | |
| TTTGACGGTGGTTTATGTAC+CGG | - | chr5.2:6252448-6252467 | MS.gene09660:intron | 40.0% | |
| TTTGAGAAGTTACGCAAGAG+GGG | - | chr5.2:6253566-6253585 | MS.gene09660:intron | 40.0% | |
| ! | AATCTCGGAGTTTTCAGATG+GGG | - | chr5.2:6252307-6252326 | MS.gene09660:intron | 40.0% |
| ! | AGTAGAGCTAAAAGCACAAC+GGG | + | chr5.2:6253122-6253141 | None:intergenic | 40.0% |
| ! | AGTTTTTGACGGAAACGTCA+AGG | - | chr5.2:6253871-6253890 | MS.gene09660:intron | 40.0% |
| ! | GAATTGGTATCTGGATTGGA+CGG | - | chr5.2:6252383-6252402 | MS.gene09660:intron | 40.0% |
| ! | GAGTAGAGCTAAAAGCACAA+CGG | + | chr5.2:6253123-6253142 | None:intergenic | 40.0% |
| ! | TAAAGAGTAGAGTGCTAAGG+AGG | + | chr5.2:6254233-6254252 | None:intergenic | 40.0% |
| ! | TAAGGTTTGTTTGGTGGTTG+GGG | + | chr5.2:6254265-6254284 | None:intergenic | 40.0% |
| ! | TATATCGAATCCGAGGGTTT+TGG | - | chr5.2:6252550-6252569 | MS.gene09660:intron | 40.0% |
| ! | TGGACGGTGGAGATTTATTT+TGG | - | chr5.2:6252399-6252418 | MS.gene09660:intron | 40.0% |
| ! | TGTGTTTCTGATGCTGATTG+AGG | - | chr5.2:6254421-6254440 | MS.gene09660:CDS | 40.0% |
| ! | TTTTCAGATGGGGTTTACGT+TGG | - | chr5.2:6252317-6252336 | MS.gene09660:intron | 40.0% |
| !! | AAAGGTTCGTGTTTTCGAGA+AGG | + | chr5.2:6252152-6252171 | None:intergenic | 40.0% |
| !! | AAGAAGCTTCTCTAAGACTG+TGG | + | chr5.2:6252103-6252122 | None:intergenic | 40.0% |
| !! | GTCAGTTGGTAATCAAACAC+AGG | - | chr5.2:6253760-6253779 | MS.gene09660:intron | 40.0% |
| !! | GTTGAATGTGACTCTGGTTT+TGG | + | chr5.2:6251997-6252016 | None:intergenic | 40.0% |
| !! | TGGTGAGGTTGATATAGTTG+AGG | - | chr5.2:6252589-6252608 | MS.gene09660:intron | 40.0% |
| !!! | AGGGTTTTGGAATTGGTATC+TGG | - | chr5.2:6252374-6252393 | MS.gene09660:intron | 40.0% |
| !!! | CTGTTTTGGAGGTTGTGATT+GGG | - | chr5.2:6252651-6252670 | MS.gene09660:intron | 40.0% |
| !!! | TGCTAAGAGGGTTTTGGAAT+TGG | - | chr5.2:6252367-6252386 | MS.gene09660:intron | 40.0% |
| !!! | TGTTTTGGAGGTTGTGATTG+GGG | - | chr5.2:6252652-6252671 | MS.gene09660:intron | 40.0% |
| !!! | TTGGAGTAATGCTGTTTTGG+AGG | - | chr5.2:6252640-6252659 | MS.gene09660:intron | 40.0% |
| ACGGAAACGTCAAGGTTAAC+AGG | - | chr5.2:6253879-6253898 | MS.gene09660:intron | 45.0% | |
| AGGGAGGTTACATTAAGGGA+CGG | - | chr5.2:6254759-6254778 | MS.gene09660:CDS | 45.0% | |
| AGGTTACATTAAGGGACGGA+GGG | - | chr5.2:6254763-6254782 | MS.gene09660:CDS | 45.0% | |
| ATCTATCACTTCCCCTCCAA+AGG | + | chr5.2:6255108-6255127 | None:intergenic | 45.0% | |
| CAAGTGATTCCATTAGGTCC+AGG | + | chr5.2:6253211-6253230 | None:intergenic | 45.0% | |
| CTTACAGAAGTAAGCACAGG+AGG | - | chr5.2:6253662-6253681 | MS.gene09660:intron | 45.0% | |
| CTTCTGTATTTCCAAGCACG+TGG | - | chr5.2:6255044-6255063 | MS.gene09660:CDS | 45.0% | |
| GAGAAGTCGTTGAAGCGAAA+AGG | + | chr5.2:6252170-6252189 | None:intergenic | 45.0% | |
| GAGCTTACAGAAGTAAGCAC+AGG | - | chr5.2:6253659-6253678 | MS.gene09660:intron | 45.0% | |
| GATAACTCTGTCACTGTGTC+CGG | + | chr5.2:6253728-6253747 | None:intergenic | 45.0% | |
| GATTAATGGAATGGGTGCAC+CGG | - | chr5.2:6252424-6252443 | MS.gene09660:intron | 45.0% | |
| GGTTGAAACTCCGGTTCATT+TGG | - | chr5.2:6252481-6252500 | MS.gene09660:intron | 45.0% | |
| GTCACTTATTGCAGCTCCAT+GGG | + | chr5.2:6255009-6255028 | None:intergenic | 45.0% | |
| TCGTTGCAGAGTAGTAAGGA+AGG | - | chr5.2:6252512-6252531 | MS.gene09660:intron | 45.0% | |
| TGCATTGTGGCTCATTCACA+GGG | - | chr5.2:6253842-6253861 | MS.gene09660:intron | 45.0% | |
| TGCGTTGTTGAATGTGACTC+TGG | + | chr5.2:6252003-6252022 | None:intergenic | 45.0% | |
| TGGGTGGTTAGATATAGGGA+CGG | + | chr5.2:6254513-6254532 | None:intergenic | 45.0% | |
| TGGTTAGATATAGGGACGGA+GGG | + | chr5.2:6254509-6254528 | None:intergenic | 45.0% | |
| TTGCACGAGGTTCAAGAAGA+AGG | + | chr5.2:6254935-6254954 | None:intergenic | 45.0% | |
| ! | AAAAGCACAACGGGCATAGT+GGG | + | chr5.2:6253113-6253132 | None:intergenic | 45.0% |
| ! | AGTAGAGTGCTAAGGAGGTT+GGG | + | chr5.2:6254228-6254247 | None:intergenic | 45.0% |
| ! | CAAATGGACTTCTGTTCGTC+AGG | - | chr5.2:6252733-6252752 | MS.gene09660:intron | 45.0% |
| ! | CAGGGACAAGCAGTTTTTGA+CGG | - | chr5.2:6253860-6253879 | MS.gene09660:intron | 45.0% |
| ! | TAAAAGCACAACGGGCATAG+TGG | + | chr5.2:6253114-6253133 | None:intergenic | 45.0% |
| ! | TGCTGTTGCTAAGAGGGTTT+TGG | - | chr5.2:6252361-6252380 | MS.gene09660:intron | 45.0% |
| !! | ACAGAAGTTGGCTTTGTTCC+AGG | + | chr5.2:6255031-6255050 | None:intergenic | 45.0% |
| !! | AGTCTTCTAAGGTTTCAGCG+AGG | + | chr5.2:6252058-6252077 | None:intergenic | 45.0% |
| !!! | GCTGTTTTGGAGGTTGTGAT+TGG | - | chr5.2:6252650-6252669 | MS.gene09660:intron | 45.0% |
| AAAGCACAACGGGCATAGTG+GGG | + | chr5.2:6253112-6253131 | None:intergenic | 50.0% | |
| AATCGCTCGTGCATAGCAGA+GGG | + | chr5.2:6253145-6253164 | None:intergenic | 50.0% | |
| AATGGGTGCACCGGATTTGA+CGG | - | chr5.2:6252433-6252452 | MS.gene09660:intron | 50.0% | |
| ACGAGCGATTGCCCACTTAT+CGG | - | chr5.2:6253155-6253174 | MS.gene09660:intron | 50.0% | |
| ACGGTGGTTTATGTACCGGA+GGG | - | chr5.2:6252452-6252471 | MS.gene09660:intron | 50.0% | |
| ATCTGACGGGAATAACCCCT+TGG | + | chr5.2:6253815-6253834 | None:intergenic | 50.0% | |
| CAGCGAGGTCGAGAATGAAT+GGG | + | chr5.2:6252043-6252062 | None:intergenic | 50.0% | |
| CAGTCACTACCTGGACCTAA+TGG | - | chr5.2:6253199-6253218 | MS.gene09660:intron | 50.0% | |
| CATTAGGTCCAGGTAGTGAC+TGG | + | chr5.2:6253201-6253220 | None:intergenic | 50.0% | |
| CTAAGACTGTGGAGAGGTTG+TGG | + | chr5.2:6252092-6252111 | None:intergenic | 50.0% | |
| CTGAATCAATGCCACGTGCT+TGG | + | chr5.2:6255058-6255077 | None:intergenic | 50.0% | |
| GAGGTTACATTAAGGGACGG+AGG | - | chr5.2:6254762-6254781 | MS.gene09660:CDS | 50.0% | |
| GATGACGTCAAGTGTTCCCA+TGG | - | chr5.2:6254990-6255009 | MS.gene09660:CDS | 50.0% | |
| GATTTGGGAAGAACGGAGGA+AGG | + | chr5.2:6252192-6252211 | None:intergenic | 50.0% | |
| GGTCACTTATTGCAGCTCCA+TGG | + | chr5.2:6255010-6255029 | None:intergenic | 50.0% | |
| GTAAGCACAGGAGGCAAACT+TGG | - | chr5.2:6253671-6253690 | MS.gene09660:intron | 50.0% | |
| GTACACAACCAGTCACTACC+TGG | - | chr5.2:6253190-6253209 | MS.gene09660:intron | 50.0% | |
| GTGCATTGTGGCTCATTCAC+AGG | - | chr5.2:6253841-6253860 | MS.gene09660:intron | 50.0% | |
| GTGGTTAGATATAGGGACGG+AGG | + | chr5.2:6254510-6254529 | None:intergenic | 50.0% | |
| GTTTCAACCTGAACACCCTC+CGG | + | chr5.2:6252470-6252489 | None:intergenic | 50.0% | |
| TATGCTCAGCAGACAGATGC+TGG | - | chr5.2:6254894-6254913 | MS.gene09660:CDS | 50.0% | |
| TCAGCGAGGTCGAGAATGAA+TGG | + | chr5.2:6252044-6252063 | None:intergenic | 50.0% | |
| TGCTTGCCGCGCATATCAAA+TGG | - | chr5.2:6252717-6252736 | MS.gene09660:intron | 50.0% | |
| TGGAGCTGCAATAAGTGACC+TGG | - | chr5.2:6255010-6255029 | MS.gene09660:CDS | 50.0% | |
| TGTAGGGACGGAGTCTTCTA+AGG | + | chr5.2:6252069-6252088 | None:intergenic | 50.0% | |
| TGTGGAGAGGTTGTGGTGTA+GGG | + | chr5.2:6252085-6252104 | None:intergenic | 50.0% | |
| TTGGAGGTTGTGATTGGGGA+AGG | - | chr5.2:6252656-6252675 | MS.gene09660:intron | 50.0% | |
| ! | GAGTAGAGTGCTAAGGAGGT+TGG | + | chr5.2:6254229-6254248 | None:intergenic | 50.0% |
| ! | GTTTGTTTGGTGGTTGGGGT+GGG | + | chr5.2:6254261-6254280 | None:intergenic | 50.0% |
| ! | TTGGTATCTGGATTGGACGG+TGG | - | chr5.2:6252386-6252405 | MS.gene09660:intron | 50.0% |
| ! | TTTGTTTGGTGGTTGGGGTG+GGG | + | chr5.2:6254260-6254279 | None:intergenic | 50.0% |
| !! | ATCGAATCCGAGGGTTTTGG+TGG | - | chr5.2:6252553-6252572 | MS.gene09660:intron | 50.0% |
| !! | GAACGGTGCTGTTGCTAAGA+GGG | - | chr5.2:6252355-6252374 | MS.gene09660:intron | 50.0% |
| !! | GCTTCTCTAAGACTGTGGAG+AGG | + | chr5.2:6252098-6252117 | None:intergenic | 50.0% |
| !! | GGGTGTTCAGGTTGAAACTC+CGG | - | chr5.2:6252472-6252491 | MS.gene09660:intron | 50.0% |
| !! | TCGTGTTTTCGAGAAGGCCA+TGG | + | chr5.2:6252146-6252165 | None:intergenic | 50.0% |
| !! | TGAACGGTGCTGTTGCTAAG+AGG | - | chr5.2:6252354-6252373 | MS.gene09660:intron | 50.0% |
| !! | TTATGTACCGGAGGGTGTTC+AGG | - | chr5.2:6252460-6252479 | MS.gene09660:intron | 50.0% |
| !!! | GTTTTGGTGGTGGTGGAGAA+TGG | - | chr5.2:6252566-6252585 | MS.gene09660:intron | 50.0% |
| CAATCGCTCGTGCATAGCAG+AGG | + | chr5.2:6253146-6253165 | None:intergenic | 55.0% | |
| CGGGGAGGATTTGGGAAGAA+CGG | + | chr5.2:6252199-6252218 | None:intergenic | 55.0% | |
| CTGTGGAGAGGTTGTGGTGT+AGG | + | chr5.2:6252086-6252105 | None:intergenic | 55.0% | |
| GACGGTGGTTTATGTACCGG+AGG | - | chr5.2:6252451-6252470 | MS.gene09660:intron | 55.0% | |
| GAGAGGTTGTGGTGTAGGGA+CGG | + | chr5.2:6252081-6252100 | None:intergenic | 55.0% | |
| GAGGTTGTGATTGGGGAAGG+TGG | - | chr5.2:6252659-6252678 | MS.gene09660:intron | 55.0% | |
| GCACAGGAGGCAAACTTGGA+AGG | - | chr5.2:6253675-6253694 | MS.gene09660:intron | 55.0% | |
| GGAGGATTTGGGAAGAACGG+AGG | + | chr5.2:6252196-6252215 | None:intergenic | 55.0% | |
| TCAACGATGCTGACGTGGCA+GGG | + | chr5.2:6252260-6252279 | None:intergenic | 55.0% | |
| TCCACCACCACCAAAACCCT+CGG | + | chr5.2:6252563-6252582 | None:intergenic | 55.0% | |
| TGCCACGTCAGCATCGTTGA+CGG | - | chr5.2:6252260-6252279 | MS.gene09660:intron | 55.0% | |
| TGTGATTGGGGAAGGTGGCA+AGG | - | chr5.2:6252664-6252683 | MS.gene09660:intron | 55.0% | |
| ! | GGTTTGTTTGGTGGTTGGGG+TGG | + | chr5.2:6254262-6254281 | None:intergenic | 55.0% |
| !! | GAATCCGAGGGTTTTGGTGG+TGG | - | chr5.2:6252556-6252575 | MS.gene09660:intron | 55.0% |
| !! | TTGGTGGTGGTGGAGAATGG+TGG | - | chr5.2:6252569-6252588 | MS.gene09660:intron | 55.0% |
| CAACGATGCTGACGTGGCAG+GGG | + | chr5.2:6252259-6252278 | None:intergenic | 60.0% | |
| GAACTGATCGGTTGCGGTGG+TGG | + | chr5.2:6252237-6252256 | None:intergenic | 60.0% | |
| GACGTGGCAGGGGAACTGAT+CGG | + | chr5.2:6252249-6252268 | None:intergenic | 60.0% | |
| GATTGGGGCGGGGAGGATTT+GGG | + | chr5.2:6252207-6252226 | None:intergenic | 60.0% | |
| GCAGGGGAACTGATCGGTTG+CGG | + | chr5.2:6252243-6252262 | None:intergenic | 60.0% | |
| GTCAACGATGCTGACGTGGC+AGG | + | chr5.2:6252261-6252280 | None:intergenic | 60.0% | |
| GTCCGTCAACGATGCTGACG+TGG | + | chr5.2:6252265-6252284 | None:intergenic | 60.0% | |
| !! | CGGTGGTGGTGGTTGGGATT+GGG | + | chr5.2:6252223-6252242 | None:intergenic | 60.0% |
| !! | GGTGGTGGAGAATGGTGGTG+AGG | - | chr5.2:6252574-6252593 | MS.gene09660:intron | 60.0% |
| !! | GGTGGTGGTGGTTGGGATTG+GGG | + | chr5.2:6252222-6252241 | None:intergenic | 60.0% |
| !!! | TCCGAGGGTTTTGGTGGTGG+TGG | - | chr5.2:6252559-6252578 | MS.gene09660:intron | 60.0% |
| GGATTGGGGCGGGGAGGATT+TGG | + | chr5.2:6252208-6252227 | None:intergenic | 65.0% | |
| GGGGAACTGATCGGTTGCGG+TGG | + | chr5.2:6252240-6252259 | None:intergenic | 65.0% | |
| GGGTGCACCGGATTTGACGG+TGG | - | chr5.2:6252436-6252455 | MS.gene09660:intron | 65.0% | |
| GTGGTGGTTGGGATTGGGGC+GGG | + | chr5.2:6252218-6252237 | None:intergenic | 65.0% | |
| TGGTGGTTGGGATTGGGGCG+GGG | + | chr5.2:6252217-6252236 | None:intergenic | 65.0% | |
| ! | CTGATCGGTTGCGGTGGTGG+TGG | + | chr5.2:6252234-6252253 | None:intergenic | 65.0% |
| ! | GGTGGTGGTTGGGATTGGGG+CGG | + | chr5.2:6252219-6252238 | None:intergenic | 65.0% |
| !! | CGGTTGCGGTGGTGGTGGTT+GGG | + | chr5.2:6252229-6252248 | None:intergenic | 65.0% |
| !! | GCGGTGGTGGTGGTTGGGAT+TGG | + | chr5.2:6252224-6252243 | None:intergenic | 65.0% |
| !! | TCGGTTGCGGTGGTGGTGGT+TGG | + | chr5.2:6252230-6252249 | None:intergenic | 65.0% |
| TGGTTGGGATTGGGGCGGGG+AGG | + | chr5.2:6252214-6252233 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.2 | gene | 6251903 | 6255202 | 6251903 | ID=MS.gene09660 |
| chr5.2 | mRNA | 6251903 | 6255202 | 6251903 | ID=MS.gene09660.t1;Parent=MS.gene09660 |
| chr5.2 | exon | 6254351 | 6255202 | 6254351 | ID=MS.gene09660.t1.exon1;Parent=MS.gene09660.t1 |
| chr5.2 | CDS | 6254351 | 6255202 | 6254351 | ID=cds.MS.gene09660.t1;Parent=MS.gene09660.t1 |
| chr5.2 | exon | 6253205 | 6253464 | 6253205 | ID=MS.gene09660.t1.exon2;Parent=MS.gene09660.t1 |
| chr5.2 | CDS | 6253205 | 6253464 | 6253205 | ID=cds.MS.gene09660.t1;Parent=MS.gene09660.t1 |
| chr5.2 | exon | 6251903 | 6252212 | 6251903 | ID=MS.gene09660.t1.exon3;Parent=MS.gene09660.t1 |
| chr5.2 | CDS | 6251903 | 6252212 | 6251903 | ID=cds.MS.gene09660.t1;Parent=MS.gene09660.t1 |
| Gene Sequence |
| Protein sequence |
