AlfalfaGEDB | MS.gene21350

M. sativa cultivar XinJiangDaYe / MS.gene21350

KEGG: K00799
GO: GO:0003674 GO:0005488 GO:0005515
PFAM: PF02798.23

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene21350.t1	RHN81220.1	92.8	221	16	0	1	221	20	240	7.10E-117	430.3

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene21350.t1	Q03664	44.6	224	116	5	7	227	1	219	2.1e-48	194.1

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene21350.t1	G7I2Y3	92.8	221	16	0	1	221	1	221	5.1e-117	430.3

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049259	MS.gene21350	0.803853	2.86E-49	-1.69E-46
MS.gene049281	MS.gene21350	0.823643	1.24E-53	-1.69E-46
MS.gene049320	MS.gene21350	-0.810018	1.42E-50	-1.69E-46
MS.gene049611	MS.gene21350	0.827438	1.56E-54	-1.69E-46
MS.gene049634	MS.gene21350	0.806737	7.11E-50	-1.69E-46
MS.gene050380	MS.gene21350	0.826515	2.60E-54	-1.69E-46
MS.gene050381	MS.gene21350	0.867748	1.09E-65	-1.69E-46
MS.gene050496	MS.gene21350	-0.808349	3.24E-50	-1.69E-46
MS.gene050504	MS.gene21350	-0.801641	8.18E-49	-1.69E-46
MS.gene050612	MS.gene21350	-0.801853	7.40E-49	-1.69E-46

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PPI:

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene21350.t1	MTR_1g090070	92.760	221	16	0	1	221	1	221	5.85e-154	429
MS.gene21350.t1	MTR_1g090060	80.569	211	40	1	7	217	1	210	9.95e-129	365
MS.gene21350.t1	MTR_1g090100	77.477	222	47	2	10	231	3	221	1.49e-124	354
MS.gene21350.t1	MTR_1g090090	76.744	215	49	1	7	221	1	214	4.08e-121	345
MS.gene21350.t1	MTR_4g059730	63.380	213	77	1	9	221	4	215	1.83e-99	290
MS.gene21350.t1	MTR_1g090150	44.643	224	117	2	7	225	1	222	7.93e-63	197
MS.gene21350.t1	MTR_1g115195	43.721	215	119	2	7	220	1	214	1.89e-60	191
MS.gene21350.t1	MTR_3g099757	43.925	214	113	4	7	217	1	210	2.47e-56	181
MS.gene21350.t1	MTR_4g019780	43.333	210	114	3	9	217	8	213	1.50e-54	176
MS.gene21350.t1	MTR_6g080440	40.654	214	124	2	7	220	1	211	1.34e-53	174

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene21350.t1	AT3G09270	46.190	210	106	6	10	216	7	212	8.38e-52	169
MS.gene21350.t1	AT2G29470	40.284	211	119	5	10	217	8	214	2.36e-51	168
MS.gene21350.t1	AT2G29450	40.092	217	123	4	9	222	6	218	1.14e-49	164
MS.gene21350.t1	AT1G10370	40.826	218	121	4	8	219	4	219	1.56e-49	163
MS.gene21350.t1	AT2G29490	38.813	219	128	4	6	222	4	218	3.35e-48	160
MS.gene21350.t1	AT1G59670	41.850	227	116	7	9	221	6	230	2.49e-47	158
MS.gene21350.t1	AT2G29420	37.915	211	128	2	9	219	9	216	1.41e-46	156
MS.gene21350.t1	AT2G29460	38.278	209	125	4	6	213	4	209	1.24e-45	153
MS.gene21350.t1	AT1G59700	39.827	231	130	6	9	232	6	234	1.66e-45	153
MS.gene21350.t1	AT5G62480	36.916	214	121	5	12	215	11	220	1.79e-44	151

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Find 68 sgRNAs with CRISPR-Local

Find 174 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGTCCAGGGATAATTTAT+TGG	0.296970	1.4:-71316304	MS.gene21350:CDS
AACATTGTAGACATAGCTCT+TGG	0.450264	1.4:-71316213	MS.gene21350:CDS
AATGATCAGAATAAGTTCTA+TGG	0.275936	1.4:-71316249	MS.gene21350:CDS
AATGGATACCGGTTTAAACT+TGG	0.408902	1.4:-71315018	MS.gene21350:CDS
AATGTATTCAACAATAATCA+TGG	0.478690	1.4:+71317319	None:intergenic
ACACAAGAAGACTCCAGTGC+TGG	0.585534	1.4:-71317369	MS.gene21350:CDS
ACAGAGCTCAAGCAAGATTT+TGG	0.157759	1.4:-71317250	MS.gene21350:CDS
ACTCCAGTGCTGGTTCATGA+TGG	0.570563	1.4:-71317359	MS.gene21350:CDS
ACTGGAGTCTTCTTGTGTAT+TGG	0.392101	1.4:+71317374	None:intergenic
AGATAAAACTACATGGATCT+TGG	0.472943	1.4:-71317508	MS.gene21350:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAGTCCAGGGATAATTTAT+TGG	-	chr1.4:71316058-71316077	MS.gene21350:CDS	30.0%
AAAGTTAAGTCACTAGTGTA+AGG	+	chr1.4:71315330-71315349	None:intergenic	30.0%
AAATGCATCCACTTATGTTA+AGG	-	chr1.4:71316994-71317013	MS.gene21350:intron	30.0%
AATCTACTTGACCAAGTTAT+TGG	-	chr1.4:71317147-71317166	MS.gene21350:intron	30.0%
AGATAAAACTACATGGATCT+TGG	-	chr1.4:71314854-71314873	MS.gene21350:CDS	30.0%
AGCTATGTCTACAATGTTAA+TGG	+	chr1.4:71316147-71316166	None:intergenic	30.0%
ATAATCATGGACTCACATAT+AGG	+	chr1.4:71315033-71315052	None:intergenic	30.0%
ATCCGTAGAATTTACTTACA+GGG	-	chr1.4:71317479-71317498	MS.gene21350:CDS	30.0%
ATCTACTTGACCAAGTTATT+GGG	-	chr1.4:71317148-71317167	MS.gene21350:intron	30.0%
ATTAAACCATAAATGCAAGC+GGG	+	chr1.4:71316246-71316265	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1.4	gene	71314829	71317555	71314829	ID=MS.gene21350
chr1.4	mRNA	71314829	71317555	71314829	ID=MS.gene21350.t1;Parent=MS.gene21350
chr1.4	exon	71317229	71317555	71317229	ID=MS.gene21350.t1.exon1;Parent=MS.gene21350.t1
chr1.4	CDS	71317229	71317555	71317229	ID=cds.MS.gene21350.t1;Parent=MS.gene21350.t1
chr1.4	exon	71316056	71316379	71316056	ID=MS.gene21350.t1.exon2;Parent=MS.gene21350.t1
chr1.4	CDS	71316056	71316379	71316056	ID=cds.MS.gene21350.t1;Parent=MS.gene21350.t1
chr1.4	exon	71315016	71315135	71315016	ID=MS.gene21350.t1.exon3;Parent=MS.gene21350.t1
chr1.4	CDS	71315016	71315135	71315016	ID=cds.MS.gene21350.t1;Parent=MS.gene21350.t1
chr1.4	exon	71314829	71314897	71314829	ID=MS.gene21350.t1.exon4;Parent=MS.gene21350.t1
chr1.4	CDS	71314829	71314897	71314829	ID=cds.MS.gene21350.t1;Parent=MS.gene21350.t1

Gene Sequence

>MS.gene21350

ATGCACAAGCTAATTAAGATGGCAGAGATAAAACTACATGGATCTTGGTATAGCCCTTTCACTTTAAGGGTGGTATGGACTCTAAATCTGAAGGGTATACCATATGATAGTATAGAGGAAGATCACTTCAATAGGACTCCTCAACTTCTTCAATATAATCCAATACACAAGAAGACTCCAGTGCTGGTTCATGATGGAAAACCTATATGTGAGTCCATGATTATTGTTGAATACATTGATGAGATATGGCCACACAACTCATTGCTTCCTGCTGATCCATATGACAGAGCTCAAGCAAGATTTTGGGTTAAATATGTTGATGACATGGTAACAAATTTCAAAACTTAATCATCATATTTGTATACTTTTTTACTTTTAATTACCAGCCTTTCTATCATGATACATGTTCCACTCATTTTTTAGGCAAAACTACCCGGAAGTCATTTAACTTAATCATTTTTCTTTTTCCAAATCAAATTAGTCATCTATCTTTAAAAACCTTACACTAGTGACTTAACTTTCATTCTTATTCTTTACCATTGTCTACATGATGATATATACTATTAAGAATGTTTCACACTCAACCCTAAAATTGGACTCTAGTTGATAACAAGATCACAATCTTGGATAAAATAAATTAAAAAATATCATGCTAGTTTTGATATTGTAGTAGTCGTTATGATGTATTTTAGATGTTGTATTTAAAAAATGAAGATGTAATTTATCTCTTTGAATGGTTTCGTAAAAGTTTTAATAACATACATAGATCAAAAATGAAGTTTGGTCAAATACCAATGAAGTTTTTAAACATAAATGACCAGCTTGACATGGAAAAAAACATATAAACGACCTTTTTAAAACTTTAAATTGAGTTGCTAAAAAAAAAAAAAAAAACTTTAAATTGAGTTAAAGGATTCATGTTGTAGTTTTGCCTATATATTCAAGACCAATCAAGAGTAAGACTTCTAAAACCTTCGCTTTAAGCACACCAACAAAAGGGTCTCATATGCACACAAAAAAGATCACATATATTAAAAATTTGTTTTACCTCCCTTACTATTGAAAATTATTGGACTATAACTAATATATTTTACCTTCTATCTTATAAACATTACTTTATATTTTACCTTCTATCTAGATTCAAACTAACAATAATATTGGGATCAATGCTTGAAGTTTCCGGCAATTGTGGCGTTCCATCGAAGCATAATTAAAGGTGAAGAGCGGGAAAAGTCCAGGGATAATTTATTGGAGCGACTCGGAGTTGTTGAGGATCAGTGCTTGAATGATCAGAATAAGTTCTATGGGGGAGAAACCATTAACATTGTAGACATAGCTCTTGGATCTTTTGTGAAATTTATTGAGGTTCAAGAAGATATGTTTGAAGTGAAGATCTTGAAAAGTGAGAGATTCCCCCGCTTGCATTTATGGTTTAATAATTTCAAGGATGTTCCAGCCATCAAAGAAAATACCTCTGAGCAAGAGAAGTTTGTGGCTTATGTAAGGCCTCTAATTGAAAAAATAATGGCATCTTCTTAAAAAAAACTACGACTTTTATGAATTCGTATGTGAAGCATGAAAAATTCTAATACGACTGGCTTCAGAAGTGATCCACCATAAATTAATACTTAATAAAAAATTTAAAACACCAACGACGACGTATGTCGTCTCATGATAAAGTATTTGTATCTTCATATCATGGGTCATCTTGTAATGTGTATTTTTTTATGCTAATAATAGTTGCTTTAACTTTAAATATCGAAAAAATAGTTGTTTTAACTTTAAACAAGTAAAATAGTTGCTTTAACTTGTCCTTTTACGTTTAATTATTGAATTTAAAAAAGGAAAATGATAGGTACAGTGACAAAATTTATTAAGAAAATTTTAAGACAGTGTATTTGTTAACACATTTCCTTAATTACACACCATTACCTCCCTTGATTTCCGTCAAATAACAAATTTAATTGGTTGAGACTTTTTCTTGATAAATTCTTGATAAAAACTCTCTAGATAAATAGCAATGCTCTTTAAAAAATCTATTTATTCATTTATTAATATTCCGAATGAACAACAGTTTGGATCACGACTTAGAAGTCTTGTCGGTTCGTTCTTCGGTTCAAATTTTGAATCAGAGATTACAACATAAAATTTTACCAAAAGATGCTAAATGCATCCACTTATGTTAAGGAATTATGTGTCATCACATTGGTAGTTAAGAAATGGAGGTCTTACCTATTAGGCCGCAAACTCGTGATCCATACGGATCAACACAGTTTGCGCCAACTCATGACCCAAGTAATCCAAACTCCGGAGCAATAAATCTACTTGACCAAGTTATTGGGGTACTCTTATGAGATCATCTATAAATCTGGGGTTCAAAAAATCTAGTGACCGATGCCTTGTCTCGTGTTCATGAACAGGCACAATACCTTGCATTAATATGCCCCATTGGGACTTCCTTTAGTAACTCAAAGATAACATTAAAAATGATGTTTAGGTCCAACTGTGACACAAAAATGGATACCGGTTTAAACTTGGGGGTGAGTCTGGATTCATTGTTCATCCTTTATAGTCAGGTTCAAGTGGCTGAATGACTATGTCTCCATGGAATTAATCTAAAACCATCCTTTTGTAACCCAACTGTATCCTTATCCGTAGAATTTACTTACAGGGAATATAGAGGAAGATCGTTTGAGTAAACTTAGAGTAAAGGCAAGAAATGAATAA

Protein sequence

>MS.gene21350.t1

MHKLIKMAEIKLHGSWYSPFTLRVVWTLNLKGIPYDSIEEDHFNRTPQLLQYNPIHKKTPVLVHDGKPICESMIIVEYIDEIWPHNSLLPADPYDRAQARFWVKYVDDMFPAIVAFHRSIIKGEEREKSRDNLLERLGVVEDQCLNDQNKFYGGETINIVDIALGSFVKFIEVQEDMFEVKILKSERFPRLHLWFNNFKDVPAIKENTSEQEKFVAYAQYLALICPIGTSFSNSKITLKMMFRSNCDTKMDTGLNLGNLLTGNIEEDRLSKLRVKARNE