AlfalfaGEDB | MS.gene25061

M. sativa cultivar XinJiangDaYe / MS.gene25061

KEGG: K09286
GO: GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141
PFAM: PF00847.23

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene25061.t1	ABO93372.1	99.5	382	2	0	1	382	1	382	1.50E-202	715.3

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene25061.t1	Q9LUM4	41.4	401	178	12	1	374	1	371	7.1e-60	232.6

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene25061.t1	A4UNV2	99.5	382	2	0	1	382	1	382	1.1e-202	715.3

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene25061.t1	TF	AP2/ERF-ERF

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene04918	MS.gene25061	0.816585	5.13E-52	-1.69E-46
MS.gene049283	MS.gene25061	0.864681	1.02E-64	-1.69E-46
MS.gene049368	MS.gene25061	0.813689	2.25E-51	-1.69E-46
MS.gene049499	MS.gene25061	0.805391	1.37E-49	-1.69E-46
MS.gene049674	MS.gene25061	0.80282	4.68E-49	-1.69E-46
MS.gene049680	MS.gene25061	0.808359	3.22E-50	-1.69E-46
MS.gene049807	MS.gene25061	0.816463	5.46E-52	-1.69E-46
MS.gene04998	MS.gene25061	0.825111	5.60E-54	-1.69E-46
MS.gene049983	MS.gene25061	0.804113	2.52E-49	-1.69E-46
MS.gene050085	MS.gene25061	0.800018	1.75E-48	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene25061.t1	MTR_8g022820	95.812	382	16	0	1	382	1	382	0.0	695
MS.gene25061.t1	MTR_8g022820	95.812	382	16	0	1	382	1	382	0.0	695
MS.gene25061.t1	MTR_8g022820	95.550	382	16	1	1	382	1	381	0.0	689
MS.gene25061.t1	MTR_2g105380	78.701	385	61	6	1	382	1	367	0.0	572
MS.gene25061.t1	MTR_1g087920	46.465	198	56	5	1	195	1	151	2.62e-43	153
MS.gene25061.t1	MTR_2g435590	77.465	71	16	0	117	187	89	159	7.16e-32	121
MS.gene25061.t1	MTR_4g086165	74.603	63	16	0	118	180	76	138	6.13e-28	109
MS.gene25061.t1	MTR_7g020980	68.657	67	21	0	115	181	42	108	7.38e-28	108
MS.gene25061.t1	MTR_7g021010	68.657	67	21	0	115	181	42	108	1.05e-27	107
MS.gene25061.t1	MTR_7g021010	71.429	63	18	0	119	181	7	69	9.88e-27	103

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene25061.t1	AT3G14230	43.532	402	163	14	1	374	1	366	4.77e-64	209
MS.gene25061.t1	AT3G14230	43.035	402	166	13	1	374	1	367	4.57e-63	206
MS.gene25061.t1	AT3G14230	42.998	407	163	15	1	374	1	371	1.25e-62	206
MS.gene25061.t1	AT1G53910	43.216	398	170	16	1	382	1	358	2.08e-56	189
MS.gene25061.t1	AT1G53910	43.216	398	170	16	1	382	1	358	2.08e-56	189
MS.gene25061.t1	AT1G53910	43.860	399	164	18	1	382	1	356	5.90e-56	187
MS.gene25061.t1	AT3G16770	45.304	181	54	5	1	181	1	136	1.88e-38	138
MS.gene25061.t1	AT1G72360	41.379	203	66	5	1	203	1	150	6.99e-38	137
MS.gene25061.t1	AT1G72360	41.872	203	67	6	1	203	1	152	8.17e-38	137
MS.gene25061.t1	AT2G47520	50.000	140	58	3	77	208	7	142	7.55e-35	126

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Find 102 sgRNAs with CRISPR-Local

Find 167 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACAGTTACCACGAACAA+AGG	0.615465	8.4:-71886881	None:intergenic
AAAACATCGCCTGCGATGGA+AGG	0.558682	8.4:-71889091	None:intergenic
AAAAGGATTCGAAGAGAAAG+AGG	0.532558	8.4:+71888306	MS.gene25061:CDS
AAAGAGGAAGAATCAGTATA+GGG	0.297510	8.4:+71888322	MS.gene25061:CDS
AAAGGAGTCCGTGTCTGGCT+CGG	0.551084	8.4:+71888398	MS.gene25061:CDS
AACAACCAGTATGCTGACAT+CGG	0.657054	8.4:+71888680	MS.gene25061:CDS
AAGAGGAAGAATCAGTATAG+GGG	0.562075	8.4:+71888323	MS.gene25061:CDS
AAGCAACTGGAGCCTCTTCA+GGG	0.489740	8.4:-71888505	None:intergenic
AATCCGTGGCAAGAAAGCCA+AGG	0.680019	8.4:+71888475	MS.gene25061:CDS
AGAAGATTTGTGGTTCTTAT+TGG	0.213713	8.4:-71886854	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAAAAGGTTTCCTTGAACT+TGG	-	chr8.4:71886712-71886731	None:intergenic	30.0%
AAAGAGGAAGAATCAGTATA+GGG	+	chr8.4:71888322-71888341	MS.gene25061:CDS	30.0%
AAATCATCGTCAAGCAAAAA+AGG	-	chr8.4:71886727-71886746	None:intergenic	30.0%
AAATTAGTTCAAAAATCGCG+TGG	-	chr8.4:71887784-71887803	None:intergenic	30.0%
AATGAATTACTGAACACATG+TGG	-	chr8.4:71887760-71887779	None:intergenic	30.0%
ACTAACTTTGAATGTGTTGT+AGG	+	chr8.4:71888236-71888255	MS.gene25061:intron	30.0%
AGAAGATTTGTGGTTCTTAT+TGG	-	chr8.4:71886857-71886876	None:intergenic	30.0%
CAACTTAAACCAACTTCAAT+TGG	-	chr8.4:71887404-71887423	None:intergenic	30.0%
CATTAGATCACCATAATGAT+AGG	-	chr8.4:71887898-71887917	None:intergenic	30.0%
CTATCATTATGGTGATCTAA+TGG	+	chr8.4:71887896-71887915	MS.gene25061:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8.4	gene	71886604	71889117	71886604	ID=MS.gene25061
chr8.4	mRNA	71886604	71889117	71886604	ID=MS.gene25061.t1;Parent=MS.gene25061
chr8.4	exon	71886604	71886892	71886604	ID=MS.gene25061.t1.exon1;Parent=MS.gene25061.t1
chr8.4	CDS	71886604	71886892	71886604	ID=cds.MS.gene25061.t1;Parent=MS.gene25061.t1
chr8.4	exon	71888258	71889117	71888258	ID=MS.gene25061.t1.exon2;Parent=MS.gene25061.t1
chr8.4	CDS	71888258	71889117	71888258	ID=cds.MS.gene25061.t1;Parent=MS.gene25061.t1

Gene Sequence

>MS.gene25061

ATGTGTGGTGGAGCTATTATCTCCGACTTCATTCCAGCTGCGGCGGCGGTGGGTGGTTCCCGCCGTGTCACGGCGGATATCCTCTGGCCGAATTTGAGGAGGAAACCAAGTTCAAGGAAACCTTTTTTGCTTGACGATGATTTCGAGGCTGGGTTCAGAGAGTTTAAGGATGATTCTGATTTCGATGAAGACGAGGATGAAGATGATGATGAAGGGTTGTTGGTCGGTGTCAAAGGTTTCACCTTTGGTTCCAATAAGAACCACAAATCTTCTAAGTCCTTTGTTCGTGGTAACTGTTTTTGCATTATTCATTTTTTTTTAGTCTGAATTTATTTTATTTTGTTTTGGTTTGGTTTTAATTGTTCACATGCATTTGTTATTTTGATGGCCCACATTTTATTATGTTTTTAGTTGATGGAAAAATTATTTTTTTAATTAAAAAAATTTAATTTTGCCAAATTTAAGGAACTATTGAGATTTTTTAGTATGATTTATGATTTTGTGGGTGGTTATTTTTATTTATGTGATTTAATTTTATAGGGTTTGTATTGAACATGAAATTTTATTGATGGTTTTTTAGATCTTGAAAATTTCTTGAGTTTTTTTTTATTTTTGCTTTGTGATTTATTTTTCTGGTTGATTGAAAAGATGATTGATCCTTTGTATTTTTTTAATGTAATTTTTGTGGATTGGTGTTTATGAGCTTTGAATGATTTTTCAGATCCAATTTAGATTGGTAATTAAAAGAAAAAGATCCAATTTAGATTGGTTGTAATTATTGGAATGATTTTATAGATCCAATTGAAGTTGGTTTAAGTTGCTTGTTAATTATTAAATTATCATAAATAAAGTTAGTTTAAGTTGCTTGTGAGTAATTGTTAAATTATCATAAATGAAGTTGGTTTAAGTTGCTTGTTAATTAATTGTTAAATTATCATAAATAAAGTTGGTTTAAGTTGCTTGTTAATTGTTAAATTATCATAAATAAAGTTGTAACCTTCAATTTTTCTTGGGTTTTTGGTGTTAATATTGTTTTTTTTTTGTTCAGTCAAGTTGAACTTTCCTCTATTTTGCTGGTTGATAAAAAACATGTTTGTTCCTTTGGCTTTGGCTGATTTTTATTTATTTTTTACTTATAGTTCATAACCAATCACCACATGTGTTCAGTAATTCATTTCCACGCGATTTTTGAACTAATTTCGTGTTATTTAACTACGTGCTTTGACTTCAATTTTGTAATAGTGATTGTTGTATATTTGCATGAATTGGTGATCATTACATGTTTGATTAACCTATCATTATGGTGATCTAATGGAACTAGTCTTTGTTTAATTGATCTTAACTTTTAAAAATTTGAGGACCATAATTGAACTTTTATTGTCTGTTTGATTAATTGTAAACAAATTGTTCATAAGTCGGTAGTGATTTGGTGTTTGTTACATTAAATTTTGCTAGTCTTTTGCTTCTGTTTTGGTTATAAATCAAACATGCATGTAATGTTTTGGTTATAAATCAAACATGCATGTAATGAGATAAACAATGTTTCCTGCTCCAAATTGCTCATTAATAATCCATATAAAATTAAAACGGTTGATGTAATTTCATCGTATTATATTGTTATTATTTATACTAACTAACTTTGAATGTGTTGTAGGATCAAGTGCTGCAAAACCTGTTGCTTTGAATTCAAACAAGCTAGCTGAAAAGGATTCGAAGAGAAAGAGGAAGAATCAGTATAGGGGTATCCGTCAACGTCCATGGGGAAAATGGGCAGCTGAGATCCGTGACCCAAGGAAAGGAGTCCGTGTCTGGCTCGGAACTTTCAACACTGCTGAAGAAGCTGCAAGAGCTTATGATGCTGAAGCTAGGAGAATCCGTGGCAAGAAAGCCAAGGTGAATTTCCCTGAAGAGGCTCCAGTTGCTTCCTCAAAACGTCTCAAGAAAAGTCCTGAGACGCAGCTGTTGAATGAAAATCTGAACTCTTTAAAGCCAAACGGAAACCAAATGTTCAATTTCGGCGAAAATATGGAGAACTACTTTTCTCCTATGGATCAAGTGGAACAGAAACCATTGGTTAACAACCAGTATGCTGACATCGGAGCCTTCTCTGGAAACGGAGTGCAACTTACATCTGCTGATGTTAATGCTTATTTCAGTTCAGAGCATTCAAGCAATTCATTTGATTATTCTGATCTATGCTGGGGCGAACAAGGTCCAAAAACACCTGAGATTTCGTCTGTGTTTTCTGCTGCTGCTCCTATGGAAGGCGAATCTCAGACGAATATGCTGTCTGACAACACTCAGGATATGCTGCCTATGCAAAATGATTCTGCAAAGACCCTCTCTGAGGAGCTTGCAGATATCGAATCCCAGCTGAAGTTCTTCGAGAACGATAACTGGAGTGATGCTTCATTGGCTGCTTTGCTTGGTGGAGACACAACTCAGGATGGTGGAAACACAATGAACCTCTGGAACTTCGATGACCTGCCTTCCATCGCAGGCGATGTTTTCTAA

Protein sequence

>MS.gene25061.t1

MCGGAIISDFIPAAAAVGGSRRVTADILWPNLRRKPSSRKPFLLDDDFEAGFREFKDDSDFDEDEDEDDDEGLLVGVKGFTFGSNKNHKSSKSFVRGSSAAKPVALNSNKLAEKDSKRKRKNQYRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNTAEEAARAYDAEARRIRGKKAKVNFPEEAPVASSKRLKKSPETQLLNENLNSLKPNGNQMFNFGENMENYFSPMDQVEQKPLVNNQYADIGAFSGNGVQLTSADVNAYFSSEHSSNSFDYSDLCWGEQGPKTPEISSVFSAAAPMEGESQTNMLSDNTQDMLPMQNDSAKTLSEELADIESQLKFFENDNWSDASLAALLGGDTTQDGGNTMNLWNFDDLPSIAGDVF