AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene36289


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene36289.t1 MTR_2g102227 86.117 497 55 3 11 504 11 496 0.0 721
MS.gene36289.t1 MTR_6g486270 52.252 222 101 3 282 500 129 348 1.82e-60 203
MS.gene36289.t1 MTR_8g022290 28.339 307 143 10 262 500 37 334 5.53e-20 92.0
MS.gene36289.t1 MTR_4g079960 43.617 94 47 2 283 370 31 124 8.58e-16 78.6
MS.gene36289.t1 MTR_4g079960 43.617 94 47 2 283 370 31 124 1.04e-15 78.6
MS.gene36289.t1 MTR_4g079960 43.617 94 47 2 283 370 31 124 1.67e-15 77.8
MS.gene36289.t1 MTR_2g016140 39.785 93 51 2 283 370 23 115 3.03e-15 77.0
MS.gene36289.t1 MTR_2g016140 39.785 93 51 2 283 370 23 115 5.19e-15 76.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene36289.t1 AT3G24490 42.912 261 129 4 245 504 65 306 4.49e-59 198
MS.gene36289.t1 AT3G14180 42.857 105 53 3 283 384 84 184 3.21e-22 99.8
MS.gene36289.t1 AT1G54060 32.031 256 130 8 283 496 94 347 8.71e-19 88.6
MS.gene36289.t1 AT3G11100 32.569 218 137 3 283 496 22 233 1.17e-17 83.2
MS.gene36289.t1 AT5G05550 30.837 227 136 6 283 502 24 236 8.61e-16 77.4
MS.gene36289.t1 AT5G05550 30.837 227 136 6 283 502 24 236 1.22e-15 77.0
MS.gene36289.t1 AT3G58630 37.255 102 50 2 283 370 26 127 1.78e-15 77.8
MS.gene36289.t1 AT5G05550 30.837 227 136 6 283 502 24 236 1.83e-15 76.6
MS.gene36289.t1 AT3G58630 37.255 102 50 2 283 370 26 127 2.14e-15 77.8
MS.gene36289.t1 AT3G10030 35.556 90 57 1 282 370 160 249 1.72e-13 73.2
MS.gene36289.t1 AT3G10030 35.556 90 57 1 282 370 160 249 2.36e-13 72.8
MS.gene36289.t1 AT3G24860 29.921 127 79 3 266 386 48 170 1.22e-11 66.2

Find 129 sgRNAs with CRISPR-Local

Find 143 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCTGATTCCATTCAGAATTT+TGG 0.118439 2.2:+1678028 MS.gene36289:CDS
CGTCTTCATCCACCTGCTTT+AGG 0.171389 2.2:-1677028 None:intergenic
CTTCTTCATCAGCATGCTTT+AGG 0.195850 2.2:-1677253 None:intergenic
CAAGATTAAGTTTCAAGATA+TGG 0.238032 2.2:+1677730 MS.gene36289:CDS
TTCCCAAATGGCTGGGAATA+TGG 0.258167 2.2:-1677131 None:intergenic
TTCTTCATCAGCATGCTTTA+GGG 0.275731 2.2:-1677252 None:intergenic
GCAGCTGCTAAACGATCTTT+TGG 0.284124 2.2:+1677494 MS.gene36289:CDS
GTCTTCATCCACCTGCTTTA+GGG 0.285453 2.2:-1677027 None:intergenic
TGGGTGGTGGAGATAGAAAA+TGG 0.290828 2.2:+1677750 MS.gene36289:CDS
CATTTGTTCTTCTTGATGCT+TGG 0.296454 2.2:+1677555 MS.gene36289:CDS
TCGCCATACCCTTGATTGTT+AGG 0.308295 2.2:-1676756 None:intergenic
ATTTGTTCTTCTTGATGCTT+GGG 0.319429 2.2:+1677556 MS.gene36289:CDS
AGAAGATTGAAAATAATAAA+AGG 0.319723 2.2:+1678062 MS.gene36289:CDS
ACAGAATCGGTTCGTGTAGA+AGG 0.331232 2.2:+1677932 MS.gene36289:CDS
TCTCCATATTCCCAGCCATT+TGG 0.360453 2.2:+1677128 MS.gene36289:CDS
GATGGATTTCCTCAACGATT+TGG 0.369450 2.2:+1678114 MS.gene36289:CDS
CTCCATATTCCCAGCCATTT+GGG 0.375943 2.2:+1677129 MS.gene36289:CDS
AGAAGATGAAGAGCGGTTAG+TGG 0.381730 2.2:+1677178 MS.gene36289:CDS
ACCAACACCATATGGGTTAG+AGG 0.383815 2.2:-1676730 None:intergenic
TTCTTGATGCTTGGGGTGAT+CGG 0.409344 2.2:+1677564 MS.gene36289:CDS
TTAGGATAACCAACACCATA+TGG 0.412870 2.2:-1676738 None:intergenic
TACCTTCATTCCCAAATGGC+TGG 0.417617 2.2:-1677139 None:intergenic
GACCGACAAAGCGAGGAATA+TGG 0.421493 2.2:+1677080 MS.gene36289:CDS
ATCGGTTTCTGCAACATAGA+AGG 0.423435 2.2:+1677582 MS.gene36289:CDS
AAGATTAAGTTTCAAGATAT+GGG 0.423794 2.2:+1677731 MS.gene36289:CDS
AACTTATGAATTTGCAGCTC+GGG 0.427130 2.2:+1677454 MS.gene36289:CDS
TCCCAGCCATTTGGGAATGA+AGG 0.432109 2.2:+1677137 MS.gene36289:CDS
AACCATATTCCTCGCTTTGT+CGG 0.453074 2.2:-1677082 None:intergenic
ATGGCAACAAGTTGCAGAAA+AGG 0.453580 2.2:+1677625 MS.gene36289:CDS
TAATAAAAGGCAGCAGATGA+TGG 0.461717 2.2:+1678075 MS.gene36289:CDS
GCGATCTCAAACACCCTTTG+AGG 0.462774 2.2:+1676775 MS.gene36289:CDS
GTTTCAAAAGTTGAAAGAAC+GGG 0.463936 2.2:+1677656 MS.gene36289:CDS
GGGTGGTGGAGATAGAAAAT+GGG 0.465027 2.2:+1677751 MS.gene36289:CDS
AAGAAAAGAAGGAGAGGAAG+GGG 0.472304 2.2:+1677974 MS.gene36289:CDS
GTTGGTTATCCTAACAATCA+AGG 0.472688 2.2:+1676747 MS.gene36289:CDS
AAAATGTTGACGACGAGGAT+GGG 0.474465 2.2:+1677306 MS.gene36289:CDS
CATCACCGTTCCCTCCTAAC+CGG 0.475969 2.2:-1676932 None:intergenic
TTGACGACGAGGATGGGGAT+AGG 0.478859 2.2:+1677312 MS.gene36289:CDS
CCTTCTCAGTCCATTCAGTA+AGG 0.479775 2.2:-1677529 None:intergenic
GCAGCTGCAGCTGACGGTGT+TGG 0.482446 2.2:-1677479 None:intergenic
TTAGGAATTCCCTTACTGAA+TGG 0.483595 2.2:+1677519 MS.gene36289:CDS
TTGTTACCTTCATTCCCAAA+TGG 0.485652 2.2:-1677143 None:intergenic
CATCATCATTCCCTCCTATC+CGG 0.487334 2.2:-1676971 None:intergenic
GGAATCAGCAAGTAATTTGA+AGG 0.488399 2.2:-1678014 None:intergenic
GCAATGACGAGGATGGGGAT+AGG 0.488482 2.2:+1677279 MS.gene36289:CDS
CGGGTAGATTCATTTGCAGC+TGG 0.491062 2.2:-1676816 None:intergenic
CAAAGAAAAGAAGGAGAGGA+AGG 0.491377 2.2:+1677972 MS.gene36289:CDS
TAATTCATCTTCATTCATCA+TGG 0.493258 2.2:-1677390 None:intergenic
CAATGACGAGGATGGGGATA+GGG 0.494589 2.2:+1677280 MS.gene36289:CDS
CATCGACATGATCATAATCT+CGG 0.496049 2.2:-1676836 None:intergenic
TATCTTACCAAAATTCTGAA+TGG 0.497261 2.2:-1678035 None:intergenic
TAGATTCATTTGCAGCTGGA+TGG 0.497620 2.2:-1676812 None:intergenic
ACCTTCATTCCCAAATGGCT+GGG 0.497851 2.2:-1677138 None:intergenic
TCCTCCTGAAAATACAGAAT+CGG 0.498451 2.2:+1677919 MS.gene36289:CDS
AGGTATCCCTCTAACCCATA+TGG 0.502976 2.2:+1676723 MS.gene36289:CDS
GCATGATTTACATAAACTCC+AGG 0.504047 2.2:-1677869 None:intergenic
AGATTCATTTGCAGCTGGAT+GGG 0.504646 2.2:-1676811 None:intergenic
GAAAATGTTGACGACGAGGA+TGG 0.512898 2.2:+1677305 MS.gene36289:CDS
AAGATAGCAATGACGAGGAT+GGG 0.513429 2.2:+1677273 MS.gene36289:CDS
GAAGATAGCAATGACGAGGA+TGG 0.518876 2.2:+1677272 MS.gene36289:CDS
GGCCTTGCCCAAAGAAAAGA+AGG 0.520654 2.2:+1677963 MS.gene36289:CDS
GACGATGAAGATCGGTTAGG+AGG 0.521555 2.2:+1676882 MS.gene36289:CDS
TGACGACGAGGATGGGGATA+GGG 0.523050 2.2:+1677313 MS.gene36289:CDS
AATATGAAGAATTCCTCAAA+GGG 0.523799 2.2:-1676788 None:intergenic
AAGTTTCAAGATATGGGTGG+TGG 0.524195 2.2:+1677737 MS.gene36289:CDS
TAGGATAACCAACACCATAT+GGG 0.528470 2.2:-1676737 None:intergenic
CCCTCTAACCCATATGGTGT+TGG 0.531952 2.2:+1676729 MS.gene36289:CDS
TATCCTAACAATCAAGGGTA+TGG 0.537427 2.2:+1676753 MS.gene36289:CDS
AAAGAAAAGAAGGAGAGGAA+GGG 0.537660 2.2:+1677973 MS.gene36289:CDS
GGAACTAGAAAAGATGAGGA+TGG 0.544427 2.2:+1678096 MS.gene36289:CDS
AGATGAAGAGCGGTTAGTGG+AGG 0.544899 2.2:+1677181 MS.gene36289:CDS
CGGTGATAATGACAATAAGC+AGG 0.547701 2.2:+1677358 MS.gene36289:CDS
AAATGTTGACGACGAGGATG+GGG 0.548278 2.2:+1677307 MS.gene36289:CDS
GGGAGTCTTGCTTGTTGTGG+TGG 0.550724 2.2:-1677809 None:intergenic
GTCGATGATGAAGATCAGTT+AGG 0.550883 2.2:+1676852 MS.gene36289:CDS
GTTGATGAAGACCGGTTAGG+AGG 0.553914 2.2:+1676921 MS.gene36289:CDS
TTTGTTCTTCTTGATGCTTG+GGG 0.554775 2.2:+1677557 MS.gene36289:CDS
GTTCGTGTAGAAGGTTTCGA+AGG 0.557020 2.2:+1677941 MS.gene36289:CDS
AGATAGCAATGACGAGGATG+GGG 0.557142 2.2:+1677274 MS.gene36289:CDS
ATCGACATGATCATAATCTC+GGG 0.559195 2.2:-1676835 None:intergenic
GTTGATGAAGACCGGATAGG+AGG 0.559685 2.2:+1676960 MS.gene36289:CDS
CCAACACCATATGGGTTAGA+GGG 0.561593 2.2:-1676729 None:intergenic
CGTTTAGCAGCTGCAGCTGA+CGG 0.562335 2.2:-1677485 None:intergenic
ATGATGTTGTTGATGAAGAC+CGG 0.562727 2.2:+1676913 MS.gene36289:CDS
TGATCATCATTCCCTAAAGC+AGG 0.566741 2.2:+1677016 MS.gene36289:CDS
GATGATGAAGATCAGTTAGG+AGG 0.571101 2.2:+1676855 MS.gene36289:CDS
GGTTTCAAAAGTTGAAAGAA+CGG 0.571460 2.2:+1677655 MS.gene36289:CDS
AATGACGATGAAGATCGGTT+AGG 0.571987 2.2:+1676879 MS.gene36289:CDS
AGGATGAAGAAGATGAAGAG+CGG 0.572202 2.2:+1677171 MS.gene36289:CDS
GTTGTTGATGAAGACCGGTT+AGG 0.573185 2.2:+1676918 MS.gene36289:CDS
TGTAAATCATGCAAATGAGA+TGG 0.574988 2.2:+1677880 MS.gene36289:CDS
TCTCTTGAGTTCGAACGACA+AGG 0.575445 2.2:-1677830 None:intergenic
ATGAAGACGATGACACCGAT+GGG 0.578930 2.2:+1677042 MS.gene36289:CDS
GATGAAGACGATGACACCGA+TGG 0.583172 2.2:+1677041 MS.gene36289:CDS
ATGATGTTGTTGATGAAGAC+CGG 0.583247 2.2:+1676952 MS.gene36289:CDS
AAGGAAGAGTCTTCGATCTG+AGG 0.584495 2.2:+1677601 MS.gene36289:CDS
GAATATGAAGAATTCCTCAA+AGG 0.587878 2.2:-1676789 None:intergenic
CAACTTATGAATTTGCAGCT+CGG 0.587886 2.2:+1677453 MS.gene36289:CDS
CAAGGGAGTCTTGCTTGTTG+TGG 0.589582 2.2:-1677812 None:intergenic
CTTCTCAGTCCATTCAGTAA+GGG 0.589672 2.2:-1677528 None:intergenic
AGAGTCTTCGATCTGAGGAA+TGG 0.593143 2.2:+1677606 MS.gene36289:CDS
GAGGGAATGACGATGAAGAT+CGG 0.593801 2.2:+1676874 MS.gene36289:CDS
AGTTGCAGAAAAGGTATCAG+TGG 0.596635 2.2:+1677634 MS.gene36289:CDS
TTCGTGTAGAAGGTTTCGAA+GGG 0.597829 2.2:+1677942 MS.gene36289:CDS
TTGATGAAGACCGGATAGGA+GGG 0.598250 2.2:+1676961 MS.gene36289:CDS
ACGATGAAGATCGGTTAGGA+GGG 0.600690 2.2:+1676883 MS.gene36289:CDS
GAAGACCGGTTAGGAGGGAA+CGG 0.600818 2.2:+1676927 MS.gene36289:CDS
TTGGTTATCCTAACAATCAA+GGG 0.603345 2.2:+1676748 MS.gene36289:CDS
CCTTACTGAATGGACTGAGA+AGG 0.603468 2.2:+1677529 MS.gene36289:CDS
ATGATGAAGATCAGTTAGGA+GGG 0.607333 2.2:+1676856 MS.gene36289:CDS
TGCCCAAAGAAAAGAAGGAG+AGG 0.607703 2.2:+1677968 MS.gene36289:CDS
CTCTTGAGTTCGAACGACAA+GGG 0.610632 2.2:-1677829 None:intergenic
TTGATGAAGACCGGTTAGGA+GGG 0.615039 2.2:+1676922 MS.gene36289:CDS
TGATGGAACTAGAAAAGATG+AGG 0.616160 2.2:+1678092 MS.gene36289:CDS
AAATGAGATGGATGACATGA+AGG 0.616691 2.2:+1677892 MS.gene36289:CDS
TCATCATTCCCTAAAGCAGG+TGG 0.639405 2.2:+1677019 MS.gene36289:CDS
ATTAAGTTTCAAGATATGGG+TGG 0.645987 2.2:+1677734 MS.gene36289:CDS
TGACAATGACCGACAAAGCG+AGG 0.648844 2.2:+1677073 MS.gene36289:CDS
TTTGTGCTTCCAAATCGTTG+AGG 0.661381 2.2:-1678123 None:intergenic
GAATGAAGGTAACAATGATG+AGG 0.691606 2.2:+1677151 MS.gene36289:CDS
GTTGTTGATGAAGACCGGAT+AGG 0.693675 2.2:+1676957 MS.gene36289:CDS
GAAGACGATGACACCGATGG+GGG 0.696635 2.2:+1677044 MS.gene36289:CDS
TGAAGAAGATAGCAATGACG+AGG 0.697416 2.2:+1677268 MS.gene36289:CDS
GAAAATGTTGATGACAATGA+CGG 0.700114 2.2:+1677338 MS.gene36289:CDS
TTGATGATGATGCAATTGCA+AGG 0.701591 2.2:+1676703 MS.gene36289:CDS
GTTATCTGAAACATTCTGTG+AGG 0.703353 2.2:+1677102 MS.gene36289:CDS
GGATGAAAATGTTGACGACG+AGG 0.709102 2.2:+1677301 MS.gene36289:CDS
TGAAGACGATGACACCGATG+GGG 0.719428 2.2:+1677043 MS.gene36289:CDS
TGAATGAAGATGAATTAGAG+TGG 0.724734 2.2:+1677396 MS.gene36289:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AGAAGATTGAAAATAATAAA+AGG + chr2.2:1678062-1678081 MS.gene36289:CDS 15.0%
!! ATTGAAGAAAAAATACAAAA+AGG + chr2.2:1677706-1677725 MS.gene36289:CDS 15.0%
!! AAGATTAAGTTTCAAGATAT+GGG + chr2.2:1677731-1677750 MS.gene36289:CDS 20.0%
! AATATGAAGAATTCCTCAAA+GGG - chr2.2:1676791-1676810 None:intergenic 25.0%
! CAAGATTAAGTTTCAAGATA+TGG + chr2.2:1677730-1677749 MS.gene36289:CDS 25.0%
! TAATTCATCTTCATTCATCA+TGG - chr2.2:1677393-1677412 None:intergenic 25.0%
! TATCTTACCAAAATTCTGAA+TGG - chr2.2:1678038-1678057 None:intergenic 25.0%
!!! ATGGGTTTATTTTCAAAAGA+TGG + chr2.2:1677769-1677788 MS.gene36289:CDS 25.0%
!!! TCTTTAGCTTTTGCTTTTTT+GGG - chr2.2:1677424-1677443 None:intergenic 25.0%
ATTAAGTTTCAAGATATGGG+TGG + chr2.2:1677734-1677753 MS.gene36289:CDS 30.0%
ATTTGTTCTTCTTGATGCTT+GGG + chr2.2:1677556-1677575 MS.gene36289:CDS 30.0%
GAATATGAAGAATTCCTCAA+AGG - chr2.2:1676792-1676811 None:intergenic 30.0%
GGTTTCAAAAGTTGAAAGAA+CGG + chr2.2:1677655-1677674 MS.gene36289:CDS 30.0%
GTTTCAAAAGTTGAAAGAAC+GGG + chr2.2:1677656-1677675 MS.gene36289:CDS 30.0%
TGAATGAAGATGAATTAGAG+TGG + chr2.2:1677396-1677415 MS.gene36289:CDS 30.0%
TGTAAATCATGCAAATGAGA+TGG + chr2.2:1677880-1677899 MS.gene36289:CDS 30.0%
TTGGTTATCCTAACAATCAA+GGG + chr2.2:1676748-1676767 MS.gene36289:CDS 30.0%
!! GAAAATGTTGATGACAATGA+CGG + chr2.2:1677338-1677357 MS.gene36289:CDS 30.0%
!!! CTCTTTAGCTTTTGCTTTTT+TGG - chr2.2:1677425-1677444 None:intergenic 30.0%
AAAGAAAAGAAGGAGAGGAA+GGG + chr2.2:1677973-1677992 MS.gene36289:CDS 35.0%
AAATGAGATGGATGACATGA+AGG + chr2.2:1677892-1677911 MS.gene36289:CDS 35.0%
AACTTATGAATTTGCAGCTC+GGG + chr2.2:1677454-1677473 MS.gene36289:CDS 35.0%
ATCGACATGATCATAATCTC+GGG - chr2.2:1676838-1676857 None:intergenic 35.0%
ATGATGAAGATCAGTTAGGA+GGG + chr2.2:1676856-1676875 MS.gene36289:CDS 35.0%
CAACTTATGAATTTGCAGCT+CGG + chr2.2:1677453-1677472 MS.gene36289:CDS 35.0%
CATCGACATGATCATAATCT+CGG - chr2.2:1676839-1676858 None:intergenic 35.0%
CATTTGTTCTTCTTGATGCT+TGG + chr2.2:1677555-1677574 MS.gene36289:CDS 35.0%
GAATGAAGGTAACAATGATG+AGG + chr2.2:1677151-1677170 MS.gene36289:CDS 35.0%
GCATGATTTACATAAACTCC+AGG - chr2.2:1677872-1677891 None:intergenic 35.0%
GGAATCAGCAAGTAATTTGA+AGG - chr2.2:1678017-1678036 None:intergenic 35.0%
GTTGGTTATCCTAACAATCA+AGG + chr2.2:1676747-1676766 MS.gene36289:CDS 35.0%
TAATAAAAGGCAGCAGATGA+TGG + chr2.2:1678075-1678094 MS.gene36289:CDS 35.0%
TAGGATAACCAACACCATAT+GGG - chr2.2:1676740-1676759 None:intergenic 35.0%
TATCCTAACAATCAAGGGTA+TGG + chr2.2:1676753-1676772 MS.gene36289:CDS 35.0%
TCCTCCTGAAAATACAGAAT+CGG + chr2.2:1677919-1677938 MS.gene36289:CDS 35.0%
TGATGGAACTAGAAAAGATG+AGG + chr2.2:1678092-1678111 MS.gene36289:CDS 35.0%
TTAGGAATTCCCTTACTGAA+TGG + chr2.2:1677519-1677538 MS.gene36289:CDS 35.0%
TTAGGATAACCAACACCATA+TGG - chr2.2:1676741-1676760 None:intergenic 35.0%
TTCTTCATCAGCATGCTTTA+GGG - chr2.2:1677255-1677274 None:intergenic 35.0%
TTGTTACCTTCATTCCCAAA+TGG - chr2.2:1677146-1677165 None:intergenic 35.0%
TTTGTTCTTCTTGATGCTTG+GGG + chr2.2:1677557-1677576 MS.gene36289:CDS 35.0%
! ATGATGTTGTTGATGAAGAC+CGG + chr2.2:1676913-1676932 MS.gene36289:CDS 35.0%
! GTTATCTGAAACATTCTGTG+AGG + chr2.2:1677102-1677121 MS.gene36289:CDS 35.0%
! TTCCTCTCCTTCTTTTCTTT+GGG - chr2.2:1677973-1677992 None:intergenic 35.0%
!! GAGCATATTTTTATGAAGCC+TGG + chr2.2:1677851-1677870 MS.gene36289:CDS 35.0%
!! GCTGATTCCATTCAGAATTT+TGG + chr2.2:1678028-1678047 MS.gene36289:CDS 35.0%
!! TTGATGATGATGCAATTGCA+AGG + chr2.2:1676703-1676722 MS.gene36289:CDS 35.0%
AAAATGTTGACGACGAGGAT+GGG + chr2.2:1677306-1677325 MS.gene36289:CDS 40.0%
AACCATATTCCTCGCTTTGT+CGG - chr2.2:1677085-1677104 None:intergenic 40.0%
AAGAAAAGAAGGAGAGGAAG+GGG + chr2.2:1677974-1677993 MS.gene36289:CDS 40.0%
AAGATAGCAATGACGAGGAT+GGG + chr2.2:1677273-1677292 MS.gene36289:CDS 40.0%
AAGTTTCAAGATATGGGTGG+TGG + chr2.2:1677737-1677756 MS.gene36289:CDS 40.0%
AATGACGATGAAGATCGGTT+AGG + chr2.2:1676879-1676898 MS.gene36289:CDS 40.0%
AGATTCATTTGCAGCTGGAT+GGG - chr2.2:1676814-1676833 None:intergenic 40.0%
AGGATGAAGAAGATGAAGAG+CGG + chr2.2:1677171-1677190 MS.gene36289:CDS 40.0%
ATGGCAACAAGTTGCAGAAA+AGG + chr2.2:1677625-1677644 MS.gene36289:CDS 40.0%
CAAAGAAAAGAAGGAGAGGA+AGG + chr2.2:1677972-1677991 MS.gene36289:CDS 40.0%
CTTCTCAGTCCATTCAGTAA+GGG - chr2.2:1677531-1677550 None:intergenic 40.0%
CTTCTTCATCAGCATGCTTT+AGG - chr2.2:1677256-1677275 None:intergenic 40.0%
GATGATGAAGATCAGTTAGG+AGG + chr2.2:1676855-1676874 MS.gene36289:CDS 40.0%
GGAACTAGAAAAGATGAGGA+TGG + chr2.2:1678096-1678115 MS.gene36289:CDS 40.0%
GTCGATGATGAAGATCAGTT+AGG + chr2.2:1676852-1676871 MS.gene36289:CDS 40.0%
TAGATTCATTTGCAGCTGGA+TGG - chr2.2:1676815-1676834 None:intergenic 40.0%
TGAAGAAGATAGCAATGACG+AGG + chr2.2:1677268-1677287 MS.gene36289:CDS 40.0%
TGATCATCATTCCCTAAAGC+AGG + chr2.2:1677016-1677035 MS.gene36289:CDS 40.0%
TTCGTGTAGAAGGTTTCGAA+GGG + chr2.2:1677942-1677961 MS.gene36289:CDS 40.0%
TTTGTGCTTCCAAATCGTTG+AGG - chr2.2:1678126-1678145 None:intergenic 40.0%
! AGCTGCTAAACGATCTTTTG+GGG + chr2.2:1677496-1677515 MS.gene36289:CDS 40.0%
! ATCGGTTTCTGCAACATAGA+AGG + chr2.2:1677582-1677601 MS.gene36289:CDS 40.0%
! CAGCTGCTAAACGATCTTTT+GGG + chr2.2:1677495-1677514 MS.gene36289:CDS 40.0%
! CGGTGATAATGACAATAAGC+AGG + chr2.2:1677358-1677377 MS.gene36289:CDS 40.0%
! CTTCCTCTCCTTCTTTTCTT+TGG - chr2.2:1677974-1677993 None:intergenic 40.0%
! GATGGATTTCCTCAACGATT+TGG + chr2.2:1678114-1678133 MS.gene36289:CDS 40.0%
!! ACCGATTCTGTATTTTCAGG+AGG - chr2.2:1677923-1677942 None:intergenic 40.0%
!! AGTTGCAGAAAAGGTATCAG+TGG + chr2.2:1677634-1677653 MS.gene36289:CDS 40.0%
!! CGAACCGATTCTGTATTTTC+AGG - chr2.2:1677926-1677945 None:intergenic 40.0%
!!! CTAAACGATCTTTTGGGGTT+AGG + chr2.2:1677501-1677520 MS.gene36289:CDS 40.0%
AAATGTTGACGACGAGGATG+GGG + chr2.2:1677307-1677326 MS.gene36289:CDS 45.0%
AAGGAAGAGTCTTCGATCTG+AGG + chr2.2:1677601-1677620 MS.gene36289:CDS 45.0%
ACCTTCATTCCCAAATGGCT+GGG - chr2.2:1677141-1677160 None:intergenic 45.0%
ACGATGAAGATCGGTTAGGA+GGG + chr2.2:1676883-1676902 MS.gene36289:CDS 45.0%
AGAAGATGAAGAGCGGTTAG+TGG + chr2.2:1677178-1677197 MS.gene36289:CDS 45.0%
AGAGTCTTCGATCTGAGGAA+TGG + chr2.2:1677606-1677625 MS.gene36289:CDS 45.0%
AGATAGCAATGACGAGGATG+GGG + chr2.2:1677274-1677293 MS.gene36289:CDS 45.0%
AGGTATCCCTCTAACCCATA+TGG + chr2.2:1676723-1676742 MS.gene36289:CDS 45.0%
ATGAAGACGATGACACCGAT+GGG + chr2.2:1677042-1677061 MS.gene36289:CDS 45.0%
CATCATCATTCCCTCCTATC+CGG - chr2.2:1676974-1676993 None:intergenic 45.0%
CCTTCTCAGTCCATTCAGTA+AGG - chr2.2:1677532-1677551 None:intergenic 45.0%
CTCCATATTCCCAGCCATTT+GGG + chr2.2:1677129-1677148 MS.gene36289:CDS 45.0%
CTCTTGAGTTCGAACGACAA+GGG - chr2.2:1677832-1677851 None:intergenic 45.0%
GAAAATGTTGACGACGAGGA+TGG + chr2.2:1677305-1677324 MS.gene36289:CDS 45.0%
GAAGATAGCAATGACGAGGA+TGG + chr2.2:1677272-1677291 MS.gene36289:CDS 45.0%
GAGGGAATGACGATGAAGAT+CGG + chr2.2:1676874-1676893 MS.gene36289:CDS 45.0%
GGATGAAAATGTTGACGACG+AGG + chr2.2:1677301-1677320 MS.gene36289:CDS 45.0%
GTCTTCATCCACCTGCTTTA+GGG - chr2.2:1677030-1677049 None:intergenic 45.0%
GTTCGTGTAGAAGGTTTCGA+AGG + chr2.2:1677941-1677960 MS.gene36289:CDS 45.0%
TACCTTCATTCCCAAATGGC+TGG - chr2.2:1677142-1677161 None:intergenic 45.0%
TCATCATTCCCTAAAGCAGG+TGG + chr2.2:1677019-1677038 MS.gene36289:CDS 45.0%
TCGCCATACCCTTGATTGTT+AGG - chr2.2:1676759-1676778 None:intergenic 45.0%
TCTCCATATTCCCAGCCATT+TGG + chr2.2:1677128-1677147 MS.gene36289:CDS 45.0%
TCTCTTGAGTTCGAACGACA+AGG - chr2.2:1677833-1677852 None:intergenic 45.0%
TGCCCAAAGAAAAGAAGGAG+AGG + chr2.2:1677968-1677987 MS.gene36289:CDS 45.0%
TTCCCAAATGGCTGGGAATA+TGG - chr2.2:1677134-1677153 None:intergenic 45.0%
TTCTTGATGCTTGGGGTGAT+CGG + chr2.2:1677564-1677583 MS.gene36289:CDS 45.0%
TTGATGAAGACCGGATAGGA+GGG + chr2.2:1676961-1676980 MS.gene36289:CDS 45.0%
TTGATGAAGACCGGTTAGGA+GGG + chr2.2:1676922-1676941 MS.gene36289:CDS 45.0%
! CTCCTTCTTTTCTTTGGGCA+AGG - chr2.2:1677968-1677987 None:intergenic 45.0%
! GCAGCTGCTAAACGATCTTT+TGG + chr2.2:1677494-1677513 MS.gene36289:CDS 45.0%
! GTTGTTGATGAAGACCGGAT+AGG + chr2.2:1676957-1676976 MS.gene36289:CDS 45.0%
! GTTGTTGATGAAGACCGGTT+AGG + chr2.2:1676918-1676937 MS.gene36289:CDS 45.0%
!! ACAGAATCGGTTCGTGTAGA+AGG + chr2.2:1677932-1677951 MS.gene36289:CDS 45.0%
!! ACCAACACCATATGGGTTAG+AGG - chr2.2:1676733-1676752 None:intergenic 45.0%
!! CCAACACCATATGGGTTAGA+GGG - chr2.2:1676732-1676751 None:intergenic 45.0%
!! CCTTACTGAATGGACTGAGA+AGG + chr2.2:1677529-1677548 MS.gene36289:CDS 45.0%
!! GGGTGGTGGAGATAGAAAAT+GGG + chr2.2:1677751-1677770 MS.gene36289:CDS 45.0%
!! TGGGTGGTGGAGATAGAAAA+TGG + chr2.2:1677750-1677769 MS.gene36289:CDS 45.0%
AGATGAAGAGCGGTTAGTGG+AGG + chr2.2:1677181-1677200 MS.gene36289:CDS 50.0%
ATTGTCATCACCACCCCCAT+CGG - chr2.2:1677060-1677079 None:intergenic 50.0%
CAATGACGAGGATGGGGATA+GGG + chr2.2:1677280-1677299 MS.gene36289:CDS 50.0%
CCCTCTAACCCATATGGTGT+TGG + chr2.2:1676729-1676748 MS.gene36289:CDS 50.0%
CGGGTAGATTCATTTGCAGC+TGG - chr2.2:1676819-1676838 None:intergenic 50.0%
CGTCTTCATCCACCTGCTTT+AGG - chr2.2:1677031-1677050 None:intergenic 50.0%
GACCGACAAAGCGAGGAATA+TGG + chr2.2:1677080-1677099 MS.gene36289:CDS 50.0%
GACGATGAAGATCGGTTAGG+AGG + chr2.2:1676882-1676901 MS.gene36289:CDS 50.0%
GATGAAGACGATGACACCGA+TGG + chr2.2:1677041-1677060 MS.gene36289:CDS 50.0%
GCGATCTCAAACACCCTTTG+AGG + chr2.2:1676775-1676794 MS.gene36289:CDS 50.0%
GGCCTTGCCCAAAGAAAAGA+AGG + chr2.2:1677963-1677982 MS.gene36289:CDS 50.0%
TCCCAGCCATTTGGGAATGA+AGG + chr2.2:1677137-1677156 MS.gene36289:CDS 50.0%
TGAAGACGATGACACCGATG+GGG + chr2.2:1677043-1677062 MS.gene36289:CDS 50.0%
TGACAATGACCGACAAAGCG+AGG + chr2.2:1677073-1677092 MS.gene36289:CDS 50.0%
! CAAGGGAGTCTTGCTTGTTG+TGG - chr2.2:1677815-1677834 None:intergenic 50.0%
! GTTGATGAAGACCGGATAGG+AGG + chr2.2:1676960-1676979 MS.gene36289:CDS 50.0%
! GTTGATGAAGACCGGTTAGG+AGG + chr2.2:1676921-1676940 MS.gene36289:CDS 50.0%
CATCACCGTTCCCTCCTAAC+CGG - chr2.2:1676935-1676954 None:intergenic 55.0%
CGTTTAGCAGCTGCAGCTGA+CGG - chr2.2:1677488-1677507 None:intergenic 55.0%
GAAGACCGGTTAGGAGGGAA+CGG + chr2.2:1676927-1676946 MS.gene36289:CDS 55.0%
GAAGACGATGACACCGATGG+GGG + chr2.2:1677044-1677063 MS.gene36289:CDS 55.0%
GCAATGACGAGGATGGGGAT+AGG + chr2.2:1677279-1677298 MS.gene36289:CDS 55.0%
TGACGACGAGGATGGGGATA+GGG + chr2.2:1677313-1677332 MS.gene36289:CDS 55.0%
TTGACGACGAGGATGGGGAT+AGG + chr2.2:1677312-1677331 MS.gene36289:CDS 55.0%
!! GGGAGTCTTGCTTGTTGTGG+TGG - chr2.2:1677812-1677831 None:intergenic 55.0%
GACGATGACACCGATGGGGG+TGG + chr2.2:1677047-1677066 MS.gene36289:CDS 65.0%
GCAGCTGCAGCTGACGGTGT+TGG - chr2.2:1677482-1677501 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr2.2 gene 1676693 1678207 1676693 ID=MS.gene36289
chr2.2 mRNA 1676693 1678207 1676693 ID=MS.gene36289.t1;Parent=MS.gene36289
chr2.2 exon 1676693 1678207 1676693 ID=MS.gene36289.t1.exon1;Parent=MS.gene36289.t1
chr2.2 CDS 1676693 1678207 1676693 ID=cds.MS.gene36289.t1;Parent=MS.gene36289.t1
Gene Sequence

>MS.gene36289

ATGGATGACATTGATGATGATGCAATTGCAAGGTATCCCTCTAACCCATATGGTGTTGGTTATCCTAACAATCAAGGGTATGGCGATCTCAAACACCCTTTGAGGAATTCTTCATATTCCCATCCAGCTGCAAATGAATCTACCCGAGATTATGATCATGTCGATGATGAAGATCAGTTAGGAGGGAATGACGATGAAGATCGGTTAGGAGGGAATGATGATGATGTTGTTGATGAAGACCGGTTAGGAGGGAACGGTGATGATGTTGTTGATGAAGACCGGATAGGAGGGAATGATGATGTTGTTGATGATGATGATGATGTTGATCATCATTCCCTAAAGCAGGTGGATGAAGACGATGACACCGATGGGGGTGGTGATGACAATGACCGACAAAGCGAGGAATATGGTTATCTGAAACATTCTGTGAGGAATTCTCCATATTCCCAGCCATTTGGGAATGAAGGTAACAATGATGAGGATGAAGAAGATGAAGAGCGGTTAGTGGAGGAAGATGATGATGATGTTGATATTGATCAAAATAACAATGTTCAGCTTTCCCTAAAGCATGCTGATGAAGAAGATAGCAATGACGAGGATGGGGATAGGGATGAAAATGTTGACGACGAGGATGGGGATAGGGATGAAAATGTTGATGACAATGACGGTGATAATGACAATAAGCAGGAAAGTTATGCCATGATGAATGAAGATGAATTAGAGTGGCACCCAAAAAAGCAAAAGCTAAAGAGTTTGATGTCAACTTATGAATTTGCAGCTCGGGTGCCAACACCGTCAGCTGCAGCTGCTAAACGATCTTTTGGGGTTAGGAATTCCCTTACTGAATGGACTGAGAAGGAGACATTTGTTCTTCTTGATGCTTGGGGTGATCGGTTTCTGCAACATAGAAGGAAGAGTCTTCGATCTGAGGAATGGCAACAAGTTGCAGAAAAGGTATCAGTGGTTTCAAAAGTTGAAAGAACGGGTACTCAGTGTAGAAATCGTTTAGATACATTGAAGAAAAAATACAAAAAGGACAAGATTAAGTTTCAAGATATGGGTGGTGGAGATAGAAAATGGGTTTATTTTCAAAAGATGGATAAACTAATGTCTTCTCCACCACAACAAGCAAGACTCCCTTGTCGTTCGAACTCAAGAGAGCATATTTTTATGAAGCCTGGAGTTTATGTAAATCATGCAAATGAGATGGATGACATGAAGGATAGTCCTCCTGAAAATACAGAATCGGTTCGTGTAGAAGGTTTCGAAGGGCCTTGCCCAAAGAAAAGAAGGAGAGGAAGGGGAAGTGATGAGTTTTCTTCCTTCAAATTACTTGCTGATTCCATTCAGAATTTTGGTAAGATATATGAGAAGATTGAAAATAATAAAAGGCAGCAGATGATGGAACTAGAAAAGATGAGGATGGATTTCCTCAACGATTTGGAAGCACAAAAGAGACAGATTTTTGAAAGATTGCAGAGTGAGATTTTAAAAATCGAGCAAAGAGATGATTAA

Protein sequence

>MS.gene36289.t1

MDDIDDDAIARYPSNPYGVGYPNNQGYGDLKHPLRNSSYSHPAANESTRDYDHVDDEDQLGGNDDEDRLGGNDDDVVDEDRLGGNGDDVVDEDRIGGNDDVVDDDDDVDHHSLKQVDEDDDTDGGGDDNDRQSEEYGYLKHSVRNSPYSQPFGNEGNNDEDEEDEERLVEEDDDDVDIDQNNNVQLSLKHADEEDSNDEDGDRDENVDDEDGDRDENVDDNDGDNDNKQESYAMMNEDELEWHPKKQKLKSLMSTYEFAARVPTPSAAAAKRSFGVRNSLTEWTEKETFVLLDAWGDRFLQHRRKSLRSEEWQQVAEKVSVVSKVERTGTQCRNRLDTLKKKYKKDKIKFQDMGGGDRKWVYFQKMDKLMSSPPQQARLPCRSNSREHIFMKPGVYVNHANEMDDMKDSPPENTESVRVEGFEGPCPKKRRRGRGSDEFSSFKLLADSIQNFGKIYEKIENNKRQQMMELEKMRMDFLNDLEAQKRQIFERLQSEILKIEQRDD