AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene52488


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene52488.t1 MTR_7g035310 88.614 202 21 1 1 202 1 200 5.96e-126 355
MS.gene52488.t1 MTR_7g035310 88.614 202 21 1 1 202 1 200 8.98e-126 355
MS.gene52488.t1 MTR_4g011040 33.553 152 84 2 66 200 82 233 1.38e-20 87.4
MS.gene52488.t1 MTR_2g103430 29.319 191 117 3 27 200 33 222 1.30e-17 79.0
MS.gene52488.t1 MTR_2g103420 32.680 153 86 2 65 200 81 233 1.47e-16 76.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene52488.t1 AT5G14660 66.304 184 57 2 19 202 42 220 2.31e-81 244
MS.gene52488.t1 AT5G14660 66.304 184 57 2 19 202 42 220 2.31e-81 244
MS.gene52488.t1 AT5G14660 66.304 184 57 2 19 202 42 220 2.31e-81 244
MS.gene52488.t1 AT1G15390 35.714 154 82 3 64 200 82 235 1.95e-21 89.7

Find 50 sgRNAs with CRISPR-Local

Find 204 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGGAATTAATGTTCAACTTA+TGG 0.242265 7.2:+61393423 MS.gene52488:CDS
GCATCAATCTTCACAGATTC+TGG 0.306156 7.2:-61394243 None:intergenic
ATTGAGTATTTACTAACTCT+TGG 0.377226 7.2:-61393499 None:intergenic
TTAATTCCCCTTTCACCATT+GGG 0.394229 7.2:-61394491 None:intergenic
ATTAATTCCCCTTTCACCAT+TGG 0.402582 7.2:-61394492 None:intergenic
TTGAGTATTTACTAACTCTT+GGG 0.412246 7.2:-61393498 None:intergenic
TTGTACAGAACTGATGGTAT+TGG 0.415936 7.2:+61393382 MS.gene52488:intron
CAAGCGCAGAACAGCGGTAG+TGG 0.425521 7.2:-61391202 None:intergenic
GTCAGGTGGAAGAAGCGGTT+TGG 0.443345 7.2:-61391233 None:intergenic
TTGAACATTAATTCCTACTT+GGG 0.445401 7.2:-61393416 None:intergenic
AATATCCAGACCCCAAGTTA+AGG 0.452492 7.2:+61391446 MS.gene52488:CDS
AACCCTCATTGAAGAGTGTT+CGG 0.455481 7.2:-61393525 None:intergenic
AAAAGCGGACTTGGTGCGGC+TGG 0.456550 7.2:-61391267 None:intergenic
GTTGAACATTAATTCCTACT+TGG 0.459640 7.2:-61393417 None:intergenic
GGACTTGGTGCGGCTGGAGG+AGG 0.469407 7.2:-61391261 None:intergenic
CCTTCACCACGTTCGCCTAC+CGG 0.476721 7.2:-61393454 None:intergenic
CGGCATTAATGCTGACGTAA+AGG 0.490802 7.2:+61393561 MS.gene52488:CDS
TCATGTTGAAATATCCGTGC+TGG 0.495228 7.2:-61394312 None:intergenic
ATAGGCACCCAATGGTGAAA+GGG 0.511338 7.2:+61394484 MS.gene52488:intron
TTTACGTCAGCATTAATGCC+GGG 0.511687 7.2:-61393559 None:intergenic
CAGAACAGCGGTAGTGGTGG+TGG 0.518553 7.2:-61391196 None:intergenic
ACATGAATTTGACCATCTAC+AGG 0.526666 7.2:+61394329 MS.gene52488:CDS
GGCTGGAGGAGGAGATAGTC+AGG 0.526868 7.2:-61391250 None:intergenic
TTTCTTAAGATTATCATCAA+AGG 0.537118 7.2:-61391491 None:intergenic
TAATGATGAAGAAGATGACT+TGG 0.540318 7.2:-61391173 None:intergenic
CTTTACGTCAGCATTAATGC+CGG 0.542608 7.2:-61393560 None:intergenic
AGCGGACTTGGTGCGGCTGG+AGG 0.547910 7.2:-61391264 None:intergenic
CCGGTAGGCGAACGTGGTGA+AGG 0.552415 7.2:+61393454 MS.gene52488:CDS
GAGGGTTGTCTATCTTTCCC+CGG 0.565473 7.2:+61393541 MS.gene52488:CDS
GATAGGCACCCAATGGTGAA+AGG 0.567830 7.2:+61394483 MS.gene52488:intron
TTCAATCCGGTAGGCGAACG+TGG 0.572000 7.2:+61393448 MS.gene52488:CDS
GTGGAAGAAGCGGTTTGGAA+TGG 0.573783 7.2:-61391228 None:intergenic
AGATAGTCAGGTGGAAGAAG+CGG 0.589249 7.2:-61391238 None:intergenic
GCGCAGAACAGCGGTAGTGG+TGG 0.592785 7.2:-61391199 None:intergenic
GATTGATGCACGTGATGTCA+AGG 0.593167 7.2:+61394257 MS.gene52488:CDS
GGTCTTTCAGCACCCCAAGT+AGG 0.597078 7.2:+61393403 MS.gene52488:CDS
GTTTGTCTGGCCTTCCAGCA+CGG 0.600965 7.2:+61394298 MS.gene52488:CDS
TGGCAGCAAGCGCAGAACAG+CGG 0.610197 7.2:-61391208 None:intergenic
GTTGAAATATCCGTGCTGGA+AGG 0.611276 7.2:-61394308 None:intergenic
TGAACATTAATTCCTACTTG+GGG 0.618628 7.2:-61393415 None:intergenic
AATGATGAAGAAGATGACTT+GGG 0.622365 7.2:-61391172 None:intergenic
AACCGAACACTCTTCAATGA+GGG 0.628227 7.2:+61393523 MS.gene52488:CDS
TAGGCACCCAATGGTGAAAG+GGG 0.632362 7.2:+61394485 MS.gene52488:intron
ATTGATGCACGTGATGTCAA+GGG 0.634587 7.2:+61394258 MS.gene52488:CDS
GATGAAGAAGATGACTTGGG+AGG 0.636397 7.2:-61391169 None:intergenic
GAACCGAACACTCTTCAATG+AGG 0.639867 7.2:+61393522 MS.gene52488:CDS
TTACGTCAGCATTAATGCCG+GGG 0.640683 7.2:-61393558 None:intergenic
TGGTGAAAGGGGAATTAATG+CGG 0.667503 7.2:+61394496 MS.gene52488:CDS
GTGTTGTGATAGGCACCCAA+TGG 0.720210 7.2:+61394476 MS.gene52488:intron
TGGAGGAGGAGATAGTCAGG+TGG 0.738771 7.2:-61391247 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTTACAAAATAAATCAAAA+AGG - chr7.2:61393990-61394009 None:intergenic 10.0%
!! TACATAAACAAAAAAAATTT+CGG - chr7.2:61394073-61394092 None:intergenic 10.0%
!!! TTTTATTATTAAGATTAAAG+GGG - chr7.2:61391931-61391950 None:intergenic 10.0%
!! AAAATTGCAAATATAATAGA+TGG - chr7.2:61393691-61393710 None:intergenic 15.0%
!! AAATATTTAATGAACCTAAA+AGG - chr7.2:61393882-61393901 None:intergenic 15.0%
!! AAATTGCAAATATAATAGAT+GGG - chr7.2:61393690-61393709 None:intergenic 15.0%
!! GTCAAAATAAATTGTTAATA+AGG - chr7.2:61392352-61392371 None:intergenic 15.0%
!!! AATAAGTTGAAAATATCTTA+TGG + chr7.2:61391652-61391671 MS.gene52488:intron 15.0%
!!! ATGTTTTTATAAAATAAGAG+TGG + chr7.2:61392538-61392557 MS.gene52488:intron 15.0%
!!! TACTTTTACTATTAGAATAA+GGG - chr7.2:61392504-61392523 None:intergenic 15.0%
!! AAAACAATAGAGAAACAAAA+AGG + chr7.2:61393074-61393093 MS.gene52488:intron 20.0%
!! AAATGTTGTAAAACAATACA+AGG - chr7.2:61393272-61393291 None:intergenic 20.0%
!! ATTAAGAAGAGAAAAAGATA+AGG - chr7.2:61393049-61393068 None:intergenic 20.0%
!! TATGATTTAAGCATTCAATT+AGG + chr7.2:61392291-61392310 MS.gene52488:intron 20.0%
!! TTATAACTTCATTTCATCTT+TGG - chr7.2:61391611-61391630 None:intergenic 20.0%
!! TTCATACTAAGTTCAAAAAT+TGG - chr7.2:61393661-61393680 None:intergenic 20.0%
!! TTTCTTAAGATTATCATCAA+AGG - chr7.2:61391494-61391513 None:intergenic 20.0%
!!! ATTTTGAATCTAGCTTTTTT+TGG + chr7.2:61393617-61393636 MS.gene52488:intron 20.0%
!!! ATTTTTGAACTTAGTATGAA+TGG + chr7.2:61393661-61393680 MS.gene52488:intron 20.0%
!!! ATTTTTTAAAGTTGTTGAGA+TGG + chr7.2:61392390-61392409 MS.gene52488:intron 20.0%
!!! CGTGTTTTATTTTCTTTTAT+TGG + chr7.2:61394096-61394115 MS.gene52488:intron 20.0%
!!! GTACTTTTACTATTAGAATA+AGG - chr7.2:61392505-61392524 None:intergenic 20.0%
!!! TAATTTCTTGTTATAGTTCT+TGG + chr7.2:61392713-61392732 MS.gene52488:intron 20.0%
!!! TCAACTTTTTTCTGTTATAT+TGG - chr7.2:61392921-61392940 None:intergenic 20.0%
!!! TTATTCTTTTTCCTTAACTT+GGG - chr7.2:61391460-61391479 None:intergenic 20.0%
!!! TTGTATTGTTTTACAACATT+TGG + chr7.2:61393271-61393290 MS.gene52488:intron 20.0%
!!! TTTATTCTTTTTCCTTAACT+TGG - chr7.2:61391461-61391480 None:intergenic 20.0%
!!! TTTGTTTTTTTGAATGAAGT+TGG + chr7.2:61391388-61391407 MS.gene52488:intron 20.0%
!!! TTTTGAATCTAGCTTTTTTT+GGG + chr7.2:61393618-61393637 MS.gene52488:intron 20.0%
!!! TTTTTTAAAGTTGTTGAGAT+GGG + chr7.2:61392391-61392410 MS.gene52488:intron 20.0%
! AAGATTAAAGGGGTAAAATT+TGG - chr7.2:61391921-61391940 None:intergenic 25.0%
! AAGGAACTCAAATAAATTAC+AGG - chr7.2:61393905-61393924 None:intergenic 25.0%
! AGAAGAGGATAACAAAATAA+GGG - chr7.2:61393738-61393757 None:intergenic 25.0%
! AGGAATTAATGTTCAACTTA+TGG + chr7.2:61393423-61393442 MS.gene52488:CDS 25.0%
! AGTGTTAGAACTATCTTATA+AGG + chr7.2:61391716-61391735 MS.gene52488:intron 25.0%
! ATGTCATAGATAGATACTTA+TGG - chr7.2:61391339-61391358 None:intergenic 25.0%
! ATTGAGTATTTACTAACTCT+TGG - chr7.2:61393502-61393521 None:intergenic 25.0%
! ATTTAATGAACCTAAAAGGA+TGG - chr7.2:61393878-61393897 None:intergenic 25.0%
! CATGATTCAAATAACATTGA+GGG + chr7.2:61393226-61393245 MS.gene52488:intron 25.0%
! GTGTTAGAACTATCTTATAA+GGG + chr7.2:61391717-61391736 MS.gene52488:intron 25.0%
! GTTATAGTTCTTGGATATTA+GGG + chr7.2:61392722-61392741 MS.gene52488:intron 25.0%
! TGTTATAGTTCTTGGATATT+AGG + chr7.2:61392721-61392740 MS.gene52488:intron 25.0%
! TTGAACATTAATTCCTACTT+GGG - chr7.2:61393419-61393438 None:intergenic 25.0%
! TTGAGTATTTACTAACTCTT+GGG - chr7.2:61393501-61393520 None:intergenic 25.0%
! TTTGAATGTTACATTAACAG+TGG + chr7.2:61393350-61393369 MS.gene52488:intron 25.0%
!! ACAAGCAATTTTTCTTTAGT+TGG - chr7.2:61394137-61394156 None:intergenic 25.0%
!! ATAATAAGACTTGTTTGAGT+AGG - chr7.2:61394210-61394229 None:intergenic 25.0%
!! ATTTTTAATCATGTAAGCCA+GGG + chr7.2:61393185-61393204 MS.gene52488:intron 25.0%
!! CAAGCAATTTTTCTTTAGTT+GGG - chr7.2:61394136-61394155 None:intergenic 25.0%
!! GGATATTTAACTATTTTCAG+CGG - chr7.2:61391433-61391452 None:intergenic 25.0%
!! TAATAAGACTTGTTTGAGTA+GGG - chr7.2:61394209-61394228 None:intergenic 25.0%
!!! AAGATAGTTCTAACACTATT+TGG - chr7.2:61391713-61391732 None:intergenic 25.0%
!!! ATATCAGTGTTCTGAAAAAA+TGG - chr7.2:61392992-61393011 None:intergenic 25.0%
!!! ATGGTATTTTTATGAACCTT+TGG + chr7.2:61394432-61394451 MS.gene52488:intron 25.0%
!!! CTATTTCTACCAACAAAATA+GGG - chr7.2:61392756-61392775 None:intergenic 25.0%
!!! GAGCTAGTTTTTAAATCATA+GGG - chr7.2:61392455-61392474 None:intergenic 25.0%
!!! TATTCTTTTTCCTTAACTTG+GGG - chr7.2:61391459-61391478 None:intergenic 25.0%
!!! TATTTTTAATCATGTAAGCC+AGG + chr7.2:61393184-61393203 MS.gene52488:intron 25.0%
!!! TCAAACAAGTCTTATTATTG+CGG + chr7.2:61394212-61394231 MS.gene52488:intron 25.0%
!!! TGAGCTAGTTTTTAAATCAT+AGG - chr7.2:61392456-61392475 None:intergenic 25.0%
AAACAAACAAAGACAGACTA+AGG - chr7.2:61392164-61392183 None:intergenic 30.0%
AACAAACAAAGACAGACTAA+GGG - chr7.2:61392163-61392182 None:intergenic 30.0%
AATAGCATATGAGCTTATAG+AGG - chr7.2:61392048-61392067 None:intergenic 30.0%
AATGATGAAGAAGATGACTT+GGG - chr7.2:61391175-61391194 None:intergenic 30.0%
AGATAGCAAACAGAACAAAA+TGG - chr7.2:61394047-61394066 None:intergenic 30.0%
AGGAAAAAGAATAAACGCAT+TGG + chr7.2:61391466-61391485 MS.gene52488:CDS 30.0%
CAAGAATGAAACCAGAAAAA+TGG + chr7.2:61393815-61393834 MS.gene52488:intron 30.0%
CACTTAACATTCTTTCAGAA+AGG - chr7.2:61393924-61393943 None:intergenic 30.0%
CAGAAGAGGATAACAAAATA+AGG - chr7.2:61393739-61393758 None:intergenic 30.0%
CATAAGCTATAAGCTCAAAA+AGG - chr7.2:61391759-61391778 None:intergenic 30.0%
CTGATCGAATTTGTAATGTT+TGG - chr7.2:61392009-61392028 None:intergenic 30.0%
GCATGATTCAAATAACATTG+AGG + chr7.2:61393225-61393244 MS.gene52488:intron 30.0%
GGATGGTTATGCTATATATT+TGG - chr7.2:61393861-61393880 None:intergenic 30.0%
GTAACATTCAAAAAAACGCA+GGG - chr7.2:61393342-61393361 None:intergenic 30.0%
GTTCAAAAGTTGTCACAAAA+TGG + chr7.2:61393141-61393160 MS.gene52488:intron 30.0%
GTTGAACATTAATTCCTACT+TGG - chr7.2:61393420-61393439 None:intergenic 30.0%
TAATGATGAAGAAGATGACT+TGG - chr7.2:61391176-61391195 None:intergenic 30.0%
TCAAAAAACTTACCTGTAGA+TGG - chr7.2:61394344-61394363 None:intergenic 30.0%
TCTACAGAACATAAGTACTT+AGG - chr7.2:61392112-61392131 None:intergenic 30.0%
TGAACATTAATTCCTACTTG+GGG - chr7.2:61393418-61393437 None:intergenic 30.0%
TGTAACATTCAAAAAAACGC+AGG - chr7.2:61393343-61393362 None:intergenic 30.0%
TTATGGATATGTCATGTCAT+AGG + chr7.2:61391669-61391688 MS.gene52488:intron 30.0%
! AACCATTTTGTGACAACTTT+TGG + chr7.2:61393018-61393037 MS.gene52488:intron 30.0%
! ACCATTTTGTGACAACTTTT+GGG + chr7.2:61393019-61393038 MS.gene52488:intron 30.0%
! CATATAACAAGTGTTGTGAT+AGG + chr7.2:61394466-61394485 MS.gene52488:intron 30.0%
! CGTTTGAAGTTTGAAAATCT+TGG + chr7.2:61393711-61393730 MS.gene52488:intron 30.0%
! CTTTCTGAAAGAATGTTAAG+TGG + chr7.2:61393922-61393941 MS.gene52488:intron 30.0%
! TATAGCATAACCATCCTTTT+AGG + chr7.2:61393865-61393884 MS.gene52488:intron 30.0%
! TATTAGAATAAGGGTGTACT+CGG - chr7.2:61392495-61392514 None:intergenic 30.0%
! TCAACTTATGGTTTTCAATC+CGG + chr7.2:61393435-61393454 MS.gene52488:CDS 30.0%
! TCTAAAGTTCATGACTATAC+TGG + chr7.2:61394157-61394176 MS.gene52488:intron 30.0%
! TCTGTCTTTGTTTGTTTCAA+CGG + chr7.2:61392167-61392186 MS.gene52488:intron 30.0%
! TCTTTATGATAGTGAAAGAC+AGG - chr7.2:61392262-61392281 None:intergenic 30.0%
! TTTGTTGGTAGAAATAGCTA+GGG + chr7.2:61392759-61392778 MS.gene52488:intron 30.0%
!! GCTATTTCTACCAACAAAAT+AGG - chr7.2:61392757-61392776 None:intergenic 30.0%
!! TTTTGTTGGTAGAAATAGCT+AGG + chr7.2:61392758-61392777 MS.gene52488:intron 30.0%
!!! AAGCTACAAGCTCTTTTTTA+TGG + chr7.2:61391629-61391648 MS.gene52488:intron 30.0%
!!! CATTTTTCTGGTTTCATTCT+TGG - chr7.2:61393817-61393836 None:intergenic 30.0%
!!! GCTTTTTTTGGGCTAATTTA+TGG + chr7.2:61393629-61393648 MS.gene52488:intron 30.0%
ACATGAATTTGACCATCTAC+AGG + chr7.2:61394329-61394348 MS.gene52488:CDS 35.0%
ACCATCAGTTCTGTACAAAA+AGG - chr7.2:61393380-61393399 None:intergenic 35.0%
AGAAAGTGACAACTACCAAA+GGG - chr7.2:61391811-61391830 None:intergenic 35.0%
AGAGAATAAGAACACAACGT+GGG + chr7.2:61393102-61393121 MS.gene52488:intron 35.0%
AGTTCTTGGATATTAGGGAA+TGG + chr7.2:61392727-61392746 MS.gene52488:intron 35.0%
ATAGATACTTATGGTGAGAG+TGG - chr7.2:61391330-61391349 None:intergenic 35.0%
ATTAATTCCCCTTTCACCAT+TGG - chr7.2:61394495-61394514 None:intergenic 35.0%
CTATCTTATAAGGGTCTGTT+TGG + chr7.2:61391726-61391745 MS.gene52488:intron 35.0%
CTGCACGATAAGAAATTTGA+AGG + chr7.2:61392221-61392240 MS.gene52488:intron 35.0%
GAAACCAGAAAAATGGAACT+TGG + chr7.2:61393822-61393841 MS.gene52488:intron 35.0%
GTTCATGACTATACTGGATA+TGG + chr7.2:61394163-61394182 MS.gene52488:intron 35.0%
TATTGATATTTCCATCACCC+TGG - chr7.2:61393205-61393224 None:intergenic 35.0%
TCCCAAAAGTTGTCACAAAA+TGG - chr7.2:61393023-61393042 None:intergenic 35.0%
TGTAAGACCAGTAAATCACA+AGG - chr7.2:61392871-61392890 None:intergenic 35.0%
TTAATTCCCCTTTCACCATT+GGG - chr7.2:61394494-61394513 None:intergenic 35.0%
TTGACTAGAAAAGATCCCTT+TGG + chr7.2:61391793-61391812 MS.gene52488:intron 35.0%
TTGCTAGAAAGAAAAAACCG+TGG - chr7.2:61393784-61393803 None:intergenic 35.0%
TTGTACAGAACTGATGGTAT+TGG + chr7.2:61393382-61393401 MS.gene52488:intron 35.0%
! GTTTTGTGAAGCTGAAAAAG+CGG - chr7.2:61391285-61391304 None:intergenic 35.0%
! TCCTTTTTGTACAGAACTGA+TGG + chr7.2:61393376-61393395 MS.gene52488:intron 35.0%
! TTGTTGGTAGAAATAGCTAG+GGG + chr7.2:61392760-61392779 MS.gene52488:intron 35.0%
!! GCTATATATTTGGTTCTTGC+TGG - chr7.2:61393851-61393870 None:intergenic 35.0%
AACCGAACACTCTTCAATGA+GGG + chr7.2:61393523-61393542 MS.gene52488:CDS 40.0%
AAGGTGAACCGACAAACTTT+GGG - chr7.2:61392852-61392871 None:intergenic 40.0%
AATATCCAGACCCCAAGTTA+AGG + chr7.2:61391446-61391465 MS.gene52488:CDS 40.0%
AATCAACAAACCAATCCCAG+AGG + chr7.2:61392601-61392620 MS.gene52488:intron 40.0%
ATACACACTCATTCTGCGTT+TGG + chr7.2:61392322-61392341 MS.gene52488:intron 40.0%
ATATGCAGACGACATACCAA+AGG - chr7.2:61394451-61394470 None:intergenic 40.0%
ATTGATGCACGTGATGTCAA+GGG + chr7.2:61394258-61394277 MS.gene52488:CDS 40.0%
CTTTACGTCAGCATTAATGC+CGG - chr7.2:61393563-61393582 None:intergenic 40.0%
GAGAAAGTGACAACTACCAA+AGG - chr7.2:61391812-61391831 None:intergenic 40.0%
GAGAGAATAAGAACACAACG+TGG + chr7.2:61393101-61393120 MS.gene52488:intron 40.0%
GCATCAATCTTCACAGATTC+TGG - chr7.2:61394246-61394265 None:intergenic 40.0%
GCATTTCTGCTTGTAGAAGA+TGG + chr7.2:61394413-61394432 MS.gene52488:intron 40.0%
GGGGATAGAAATCATAGTCT+GGG + chr7.2:61392780-61392799 MS.gene52488:intron 40.0%
GTTATCATGACGAGCTTCAA+TGG + chr7.2:61393944-61393963 MS.gene52488:intron 40.0%
TCATGTTGAAATATCCGTGC+TGG - chr7.2:61394315-61394334 None:intergenic 40.0%
TGGTGAAAGGGGAATTAATG+CGG + chr7.2:61394496-61394515 MS.gene52488:CDS 40.0%
TTCTGCAATTGAGTGAGTGT+AGG - chr7.2:61392819-61392838 None:intergenic 40.0%
TTTACGTCAGCATTAATGCC+GGG - chr7.2:61393562-61393581 None:intergenic 40.0%
! CGATTTTCAGTCAGTTTGTC+TGG + chr7.2:61394285-61394304 MS.gene52488:CDS 40.0%
! CTTATGGTTTTCAATCCGGT+AGG + chr7.2:61393439-61393458 MS.gene52488:CDS 40.0%
! GAATGGCTACCCTATTTTGT+TGG + chr7.2:61392744-61392763 MS.gene52488:intron 40.0%
! TGTTGGTAGAAATAGCTAGG+GGG + chr7.2:61392761-61392780 MS.gene52488:intron 40.0%
!! AACCCTCATTGAAGAGTGTT+CGG - chr7.2:61393528-61393547 None:intergenic 40.0%
!! GATGCCAAGTTCCATTTTTC+TGG - chr7.2:61393829-61393848 None:intergenic 40.0%
!! TTTTTCCTTAACTTGGGGTC+TGG - chr7.2:61391454-61391473 None:intergenic 40.0%
!!! CAGCTCATGCTATTTTGTCA+GGG - chr7.2:61392677-61392696 None:intergenic 40.0%
!!! TCAGCTCATGCTATTTTGTC+AGG - chr7.2:61392678-61392697 None:intergenic 40.0%
AAAAGCCAGTTGGTCAGAAG+AGG - chr7.2:61393753-61393772 None:intergenic 45.0%
AATCATGTAAGCCAGGGTGA+TGG + chr7.2:61393191-61393210 MS.gene52488:intron 45.0%
ACCATCAATAACACCCACCA+TGG + chr7.2:61393300-61393319 MS.gene52488:intron 45.0%
AGAGGACACGGTTATAAAGC+AGG - chr7.2:61392631-61392650 None:intergenic 45.0%
AGATAGTCAGGTGGAAGAAG+CGG - chr7.2:61391241-61391260 None:intergenic 45.0%
ATAACCGTGTCCTCTGTTCT+GGG + chr7.2:61392636-61392655 MS.gene52488:intron 45.0%
ATAGGCACCCAATGGTGAAA+GGG + chr7.2:61394484-61394503 MS.gene52488:intron 45.0%
CAAGGTGAACCGACAAACTT+TGG - chr7.2:61392853-61392872 None:intergenic 45.0%
CGGCATTAATGCTGACGTAA+AGG + chr7.2:61393561-61393580 MS.gene52488:CDS 45.0%
CGGTTCACCTTGTGATTTAC+TGG + chr7.2:61392861-61392880 MS.gene52488:intron 45.0%
CGTTAGAAAGCAACCATGGT+GGG - chr7.2:61393316-61393335 None:intergenic 45.0%
GAACCGAACACTCTTCAATG+AGG + chr7.2:61393522-61393541 MS.gene52488:CDS 45.0%
GACTCGTTAGAAAGCAACCA+TGG - chr7.2:61393320-61393339 None:intergenic 45.0%
GAGGACACGGTTATAAAGCA+GGG - chr7.2:61392630-61392649 None:intergenic 45.0%
GATTGATGCACGTGATGTCA+AGG + chr7.2:61394257-61394276 MS.gene52488:CDS 45.0%
GGGGGATAGAAATCATAGTC+TGG + chr7.2:61392779-61392798 MS.gene52488:intron 45.0%
GTCTTGCACCCAAAGTTTGT+CGG + chr7.2:61392841-61392860 MS.gene52488:intron 45.0%
GTTATCCTCTTCTGACCAAC+TGG + chr7.2:61393745-61393764 MS.gene52488:intron 45.0%
GTTGAAATATCCGTGCTGGA+AGG - chr7.2:61394311-61394330 None:intergenic 45.0%
TATAAAGCAGGGACACCTCT+GGG - chr7.2:61392619-61392638 None:intergenic 45.0%
TATAACCGTGTCCTCTGTTC+TGG + chr7.2:61392635-61392654 MS.gene52488:intron 45.0%
TCGTTAGAAAGCAACCATGG+TGG - chr7.2:61393317-61393336 None:intergenic 45.0%
TTACGTCAGCATTAATGCCG+GGG - chr7.2:61393561-61393580 None:intergenic 45.0%
TTATAAAGCAGGGACACCTC+TGG - chr7.2:61392620-61392639 None:intergenic 45.0%
! GATGAAGAAGATGACTTGGG+AGG - chr7.2:61391172-61391191 None:intergenic 45.0%
! TGAAGCTGAAAAAGCGGACT+TGG - chr7.2:61391279-61391298 None:intergenic 45.0%
!! ACCATGGTGGGTGTTATTGA+TGG - chr7.2:61393304-61393323 None:intergenic 45.0%
!!! TCTTCTGACCAACTGGCTTT+TGG + chr7.2:61393752-61393771 MS.gene52488:intron 45.0%
!!! AATTTTATTATTAAGATTAA+AGG - chr7.2:61391933-61391952 None:intergenic 5.0%
!!! ATTTTATTATTAAGATTAAA+GGG - chr7.2:61391932-61391951 None:intergenic 5.0%
AAGTCCCAGAACAGAGGACA+CGG - chr7.2:61392643-61392662 None:intergenic 50.0%
AGACAGAAGTCCCAGAACAG+AGG - chr7.2:61392649-61392668 None:intergenic 50.0%
GAGGGTTGTCTATCTTTCCC+CGG + chr7.2:61393541-61393560 MS.gene52488:CDS 50.0%
GATAGGCACCCAATGGTGAA+AGG + chr7.2:61394483-61394502 MS.gene52488:intron 50.0%
GTGTTGTGATAGGCACCCAA+TGG + chr7.2:61394476-61394495 MS.gene52488:intron 50.0%
TAGGCACCCAATGGTGAAAG+GGG + chr7.2:61394485-61394504 MS.gene52488:intron 50.0%
! GTGGAAGAAGCGGTTTGGAA+TGG - chr7.2:61391231-61391250 None:intergenic 50.0%
!! CTGAAAAAGCGGACTTGGTG+CGG - chr7.2:61391274-61391293 None:intergenic 50.0%
GGCACTCACCAAAAGCCAGT+TGG - chr7.2:61393763-61393782 None:intergenic 55.0%
GGTCTTTCAGCACCCCAAGT+AGG + chr7.2:61393403-61393422 MS.gene52488:CDS 55.0%
GTCAGGTGGAAGAAGCGGTT+TGG - chr7.2:61391236-61391255 None:intergenic 55.0%
TGGAGGAGGAGATAGTCAGG+TGG - chr7.2:61391250-61391269 None:intergenic 55.0%
TTCAATCCGGTAGGCGAACG+TGG + chr7.2:61393448-61393467 MS.gene52488:CDS 55.0%
! GTTTGTCTGGCCTTCCAGCA+CGG + chr7.2:61394298-61394317 MS.gene52488:CDS 55.0%
!! CTGGCTTTTGGTGAGTGCCA+CGG + chr7.2:61393764-61393783 MS.gene52488:intron 55.0%
CAAGCGCAGAACAGCGGTAG+TGG - chr7.2:61391205-61391224 None:intergenic 60.0%
CCTTCACCACGTTCGCCTAC+CGG - chr7.2:61393457-61393476 None:intergenic 60.0%
GGCTGGAGGAGGAGATAGTC+AGG - chr7.2:61391253-61391272 None:intergenic 60.0%
TGGCAGCAAGCGCAGAACAG+CGG - chr7.2:61391211-61391230 None:intergenic 60.0%
! CAGAACAGCGGTAGTGGTGG+TGG - chr7.2:61391199-61391218 None:intergenic 60.0%
!! AAAAGCGGACTTGGTGCGGC+TGG - chr7.2:61391270-61391289 None:intergenic 60.0%
!! AGCAGGGACACCTCTGGGAT+TGG - chr7.2:61392614-61392633 None:intergenic 60.0%
CCGGTAGGCGAACGTGGTGA+AGG + chr7.2:61393454-61393473 MS.gene52488:CDS 65.0%
! GCGCAGAACAGCGGTAGTGG+TGG - chr7.2:61391202-61391221 None:intergenic 65.0%
!! AGCGGACTTGGTGCGGCTGG+AGG - chr7.2:61391267-61391286 None:intergenic 70.0%
!! GGACTTGGTGCGGCTGGAGG+AGG - chr7.2:61391264-61391283 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr7.2 gene 61391158 61394538 61391158 ID=MS.gene52488
chr7.2 mRNA 61391158 61394538 61391158 ID=MS.gene52488.t1;Parent=MS.gene52488
chr7.2 exon 61391158 61391317 61391158 ID=MS.gene52488.t1.exon1;Parent=MS.gene52488.t1
chr7.2 CDS 61391158 61391317 61391158 ID=cds.MS.gene52488.t1;Parent=MS.gene52488.t1
chr7.2 exon 61391407 61391545 61391407 ID=MS.gene52488.t1.exon2;Parent=MS.gene52488.t1
chr7.2 CDS 61391407 61391545 61391407 ID=cds.MS.gene52488.t1;Parent=MS.gene52488.t1
chr7.2 exon 61393390 61393582 61393390 ID=MS.gene52488.t1.exon3;Parent=MS.gene52488.t1
chr7.2 CDS 61393390 61393582 61393390 ID=cds.MS.gene52488.t1;Parent=MS.gene52488.t1
chr7.2 exon 61394240 61394350 61394240 ID=MS.gene52488.t1.exon4;Parent=MS.gene52488.t1
chr7.2 CDS 61394240 61394350 61394240 ID=cds.MS.gene52488.t1;Parent=MS.gene52488.t1
chr7.2 exon 61394488 61394538 61394488 ID=MS.gene52488.t1.exon5;Parent=MS.gene52488.t1
chr7.2 CDS 61394488 61394538 61394488 ID=cds.MS.gene52488.t1;Parent=MS.gene52488.t1
Gene Sequence

>MS.gene52488

ATGGCTTCACTCCTCCCAAGTCATCTTCTTCATCATTACCACCACCACTACCGCTGTTCTGCGCTTGCTGCCATTCCAAACCGCTTCTTCCACCTGACTATCTCCTCCTCCAGCCGCACCAAGTCCGCTTTTTCAGCTTCACAAAACGAACTCGCTTCTCGTATGTTCTCCACTCTCACCATAAGTATCTATCTATGACATTTTTGCTCAAACGCTTCTCGTAATCTCTGTTTGTTTTTTTGAATGAAGTTGGTGATTTAGAATTTGAAGCGCCGCTGAAAATAGTTAAATATCCAGACCCCAAGTTAAGGAAAAAGAATAAACGCATTGGAACCTTTGATGATAATCTTAAGAAACTTGTAGATGAAATGTTCGACGTAATGTACAAGTAAGTAACACTTTTTTCATTTTCAGTTAAGTGCTTATCTATAACTATAAGATGTTTCTATACCAAAGATGAAATGAAGTTATAAGCTACAAGCTCTTTTTTATGGAATAAGTTGAAAATATCTTATGGATATGTCATGTCATAGGTTGTTCTCATAATCTCTTCCAAATAGTGTTAGAACTATCTTATAAGGGTCTGTTTGGCAAGACACCTTTTTGAGCTTATAGCTTATGTCTTATAAGCTCGTTTGACTAGAAAAGATCCCTTTGGTAGTTGTCACTTTCTCACAAGCTTATAGCTTATTTTATTTCACTAGCTTACAACGTTTTTTGATGAGATAATTCAAGTAACTTATAGCTTATGATATATTTACCAAATTTTACCCCTTTAATCTTAATAATAAAATTCAAATTTGTTTTTGTCATTTTATATTTATAAGTTAGTTTAACATCTAATTTTACCAAACATTACAAATTCGATCAGCTAACTCATCAGCTATCCTCTATAAGCTCATATGCTATTAGTTAGCTTATCAACTATGCGCTACATTTTACTAAACAGAGCCTAAGTACTTATGTTCTGTAGATAAGTTCAAATAAGTCAATTCAAACAGACCCTTAGTCTGTCTTTGTTTGTTTCAACGGAGTAGAATATTTTCATTGACTCATTTATGATCTGCACGATAAGAAATTTGAAGGAAATTTTTTGTTTCTCCTGTCTTTCACTATCATAAAGATTTTATTTGTATGATTTAAGCATTCAATTAGGTATAGTAAATACACACTCATTCTGCGTTTGGATTGCCTTATTAACAATTTATTTTGACTTATTTGCTTGCATAATCATTTTTTAAAGTTGTTGAGATGGGTTATCGAAATAGCTTATAGCATATTTATGAAGAGTTTTCCCTATGATTTAAAAACTAGCTCATACATGAGCATTGTATCCGAGTACACCCTTATTCTAATAGTAAAAGTACGTATTTTCAGCAAATGTTTTTATAAAATAAGAGTGGTCATTATGTATGCAAAATCAACTATATTTGACGTTCGATGAATCAACAAACCAATCCCAGAGGTGTCCCTGCTTTATAACCGTGTCCTCTGTTCTGGGACTTCTGTCTAATGTCCCTGACAAAATAGCATGAGCTGATAATGATAGTACATTTAATTTCTTGTTATAGTTCTTGGATATTAGGGAATGGCTACCCTATTTTGTTGGTAGAAATAGCTAGGGGGATAGAAATCATAGTCTGGGAGAAGATGTAAAACCTACACTCACTCAATTGCAGAATAGTCTTGCACCCAAAGTTTGTCGGTTCACCTTGTGATTTACTGGTCTTACAAAAACAGTAAATCTTTTATCTAGTATGCCAATATAACAGAAAAAAGTTGAATTTGAACAACACTTGAAATATTTTTAAGAGTAATGATATTTGTAGAACCATTTTTTCAGAACACTGATATCTGTACAACCATTTTGTGACAACTTTTGGGACAACCTTATCTTTTTCTCTTCTTAATGATCAAAAACAATAGAGAAACAAAAAGGAAGAGAGAGAATAAGAACACAACGTGGGTATGAGAGAGAAAGTTGTTCAAAAGTTGTCACAAAATGGTTGTGCAAATATCATTTCTCTATTTTTAATCATGTAAGCCAGGGTGATGGAAATATCAATAGCATGATTCAAATAACATTGAGGGATATTTCAGAGAAATCGATACCTTGTATTGTTTTACAACATTTGGAATTAAACCATCAATAACACCCACCATGGTTGCTTTCTAACGAGTCCCTGCGTTTTTTTGAATGTTACATTAACAGTGGACTTCCTTTTTGTACAGAACTGATGGTATTGGTCTTTCAGCACCCCAAGTAGGAATTAATGTTCAACTTATGGTTTTCAATCCGGTAGGCGAACGTGGTGAAGGAGAAGAAATTGTTCTTGTAAACCCAAGAGTTAGTAAATACTCAATGAACCGAACACTCTTCAATGAGGGTTGTCTATCTTTCCCCGGCATTAATGCTGACGTAAAGGTATGAAAATGAAACTCTTTTCTTTTACTGTACTATTTTGAATCTAGCTTTTTTTGGGCTAATTTATGGTGATAGCCAATTTTTGAACTTAGTATGAATGGTATCCCATCTATTATATTTGCAATTTTCGTTTGAAGTTTGAAAATCTTGGTCCCTTATTTTGTTATCCTCTTCTGACCAACTGGCTTTTGGTGAGTGCCACGGTTTTTTCTTTCTAGCAATTAGAAACTACCAAGAATGAAACCAGAAAAATGGAACTTGGCATCCAGCAAGAACCAAATATATAGCATAACCATCCTTTTAGGTTCATTAAATATTTCCTGTAATTTATTTGAGTTCCTTTCTGAAAGAATGTTAAGTGGTTATCATGACGAGCTTCAATGGCTACATGTCTGTTTTATTTTCCTTTTTGATTTATTTTGTAAATAACAGTTGTGTTGTGTTTGTTCGAATTTGTTATTCCATTTTGTTCTGTTTGCTATCTGTACCGAAATTTTTTTTGTTTATGTAGTTCGTGTTTTATTTTCTTTTATTGGTATTTAAAACTGTGCCCAACTAAAGAAAAATTGCTTGTTCTAAAGTTCATGACTATACTGGATATGGTCTTTTAATGTTTATTTCATCCCTACTCAAACAAGTCTTATTATTGCGGTGTAGAGACCAGAATCTGTGAAGATTGATGCACGTGATGTCAAGGGAACACGATTTTCAGTCAGTTTGTCTGGCCTTCCAGCACGGATATTTCAACATGAATTTGACCATCTACAGGTAAGTTTTTTGACTTGCAAATATAAAGATTTTTTTTTTCTTTTCTTTTTACTGATAATAAAGCATTTCTGCTTGTAGAAGATGGTATTTTTATGAACCTTTGGTATGTCGTCTGCATATAACAAGTGTTGTGATAGGCACCCAATGGTGAAAGGGGAATTAATGCGGATATCAATTCAAACCTATAA

Protein sequence

>MS.gene52488.t1

MASLLPSHLLHHYHHHYRCSALAAIPNRFFHLTISSSSRTKSAFSASQNELASLGDLEFEAPLKIVKYPDPKLRKKNKRIGTFDDNLKKLVDEMFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVSKYSMNRTLFNEGCLSFPGINADVKRPESVKIDARDVKGTRFSVSLSGLPARIFQHEFDHLQAPNGERGINADINSNL