Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene55961.t1 | XP_003594693.1 | 94.6 | 297 | 16 | 0 | 1 | 297 | 1 | 297 | 2.90E-161 | 577.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene55961.t1 | P22242 | 57.9 | 292 | 107 | 4 | 11 | 287 | 8 | 298 | 5.9e-86 | 318.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene55961.t1 | A2Q669 | 94.6 | 297 | 16 | 0 | 1 | 297 | 1 | 297 | 2.1e-161 | 577.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049171 | MS.gene55961 | -0.800112 | 1.68E-48 | -1.69E-46 |
| MS.gene049232 | MS.gene55961 | -0.805393 | 1.36E-49 | -1.69E-46 |
| MS.gene049259 | MS.gene55961 | 0.801109 | 1.05E-48 | -1.69E-46 |
| MS.gene049281 | MS.gene55961 | 0.849887 | 2.42E-60 | -1.69E-46 |
| MS.gene049285 | MS.gene55961 | -0.806519 | 7.91E-50 | -1.69E-46 |
| MS.gene049320 | MS.gene55961 | -0.822998 | 1.76E-53 | -1.69E-46 |
| MS.gene049611 | MS.gene55961 | 0.827309 | 1.68E-54 | -1.69E-46 |
| MS.gene050082 | MS.gene55961 | 0.830149 | 3.46E-55 | -1.69E-46 |
| MS.gene05010 | MS.gene55961 | -0.801016 | 1.10E-48 | -1.69E-46 |
| MS.gene050165 | MS.gene55961 | -0.802671 | 5.02E-49 | -1.69E-46 |
| MS.gene050170 | MS.gene55961 | -0.806269 | 8.93E-50 | -1.69E-46 |
| MS.gene050323 | MS.gene55961 | -0.816969 | 4.20E-52 | -1.69E-46 |
| MS.gene050381 | MS.gene55961 | 0.841541 | 4.46E-58 | -1.69E-46 |
| MS.gene050496 | MS.gene55961 | -0.843127 | 1.70E-58 | -1.69E-46 |
| MS.gene050504 | MS.gene55961 | -0.822323 | 2.52E-53 | -1.69E-46 |
| MS.gene050612 | MS.gene55961 | -0.819383 | 1.20E-52 | -1.69E-46 |
| MS.gene050675 | MS.gene55961 | -0.812593 | 3.92E-51 | -1.69E-46 |
| MS.gene050868 | MS.gene55961 | -0.827847 | 1.25E-54 | -1.69E-46 |
| MS.gene050871 | MS.gene55961 | -0.826224 | 3.05E-54 | -1.69E-46 |
| MS.gene050883 | MS.gene55961 | 0.810856 | 9.36E-51 | -1.69E-46 |
| MS.gene050986 | MS.gene55961 | -0.802228 | 6.20E-49 | -1.69E-46 |
| MS.gene051044 | MS.gene55961 | 0.865941 | 4.10E-65 | -1.69E-46 |
| MS.gene05104 | MS.gene55961 | 0.818414 | 1.99E-52 | -1.69E-46 |
| MS.gene051127 | MS.gene55961 | 0.828152 | 1.05E-54 | -1.69E-46 |
| MS.gene051138 | MS.gene55961 | 0.835778 | 1.38E-56 | -1.69E-46 |
| MS.gene051268 | MS.gene55961 | -0.815573 | 8.63E-52 | -1.69E-46 |
| MS.gene051364 | MS.gene55961 | 0.845465 | 3.99E-59 | -1.69E-46 |
| MS.gene051366 | MS.gene55961 | 0.84445 | 7.50E-59 | -1.69E-46 |
| MS.gene051367 | MS.gene55961 | 0.811138 | 8.13E-51 | -1.69E-46 |
| MS.gene051422 | MS.gene55961 | 0.820734 | 5.86E-53 | -1.69E-46 |
| MS.gene051651 | MS.gene55961 | 0.805205 | 1.49E-49 | -1.69E-46 |
| MS.gene052916 | MS.gene55961 | -0.808534 | 2.95E-50 | -1.69E-46 |
| MS.gene053069 | MS.gene55961 | 0.823345 | 1.46E-53 | -1.69E-46 |
| MS.gene053420 | MS.gene55961 | 0.861183 | 1.23E-63 | -1.69E-46 |
| MS.gene053488 | MS.gene55961 | 0.808576 | 2.89E-50 | -1.69E-46 |
| MS.gene053561 | MS.gene55961 | 0.800495 | 1.40E-48 | -1.69E-46 |
| MS.gene053887 | MS.gene55961 | 0.804743 | 1.87E-49 | -1.69E-46 |
| MS.gene054056 | MS.gene55961 | 0.854593 | 1.11E-61 | -1.69E-46 |
| MS.gene054642 | MS.gene55961 | -0.800746 | 1.25E-48 | -1.69E-46 |
| MS.gene054706 | MS.gene55961 | 0.804052 | 2.60E-49 | -1.69E-46 |
| MS.gene05470 | MS.gene55961 | -0.801759 | 7.74E-49 | -1.69E-46 |
| MS.gene05483 | MS.gene55961 | 0.807615 | 4.64E-50 | -1.69E-46 |
| MS.gene054954 | MS.gene55961 | -0.819064 | 1.41E-52 | -1.69E-46 |
| MS.gene054959 | MS.gene55961 | 0.837764 | 4.29E-57 | -1.69E-46 |
| MS.gene055154 | MS.gene55961 | 0.839472 | 1.55E-57 | -1.69E-46 |
| MS.gene055202 | MS.gene55961 | 0.813346 | 2.68E-51 | -1.69E-46 |
| MS.gene055362 | MS.gene55961 | -0.813891 | 2.03E-51 | -1.69E-46 |
| MS.gene055577 | MS.gene55961 | -0.814616 | 1.41E-51 | -1.69E-46 |
| MS.gene055751 | MS.gene55961 | -0.807037 | 6.15E-50 | -1.69E-46 |
| MS.gene055776 | MS.gene55961 | -0.801964 | 7.02E-49 | -1.69E-46 |
| MS.gene05589 | MS.gene55961 | -0.825978 | 3.49E-54 | -1.69E-46 |
| MS.gene055942 | MS.gene55961 | 0.850589 | 1.54E-60 | -1.69E-46 |
| MS.gene056224 | MS.gene55961 | 0.815657 | 8.26E-52 | -1.69E-46 |
| MS.gene056311 | MS.gene55961 | 0.805944 | 1.05E-49 | -1.69E-46 |
| MS.gene056504 | MS.gene55961 | -0.839152 | 1.88E-57 | -1.69E-46 |
| MS.gene056657 | MS.gene55961 | -0.803465 | 3.44E-49 | -1.69E-46 |
| MS.gene056692 | MS.gene55961 | -0.810718 | 1.00E-50 | -1.69E-46 |
| MS.gene056761 | MS.gene55961 | 0.816379 | 5.70E-52 | -1.69E-46 |
| MS.gene056856 | MS.gene55961 | 0.843182 | 1.64E-58 | -1.69E-46 |
| MS.gene056857 | MS.gene55961 | 0.812023 | 5.22E-51 | -1.69E-46 |
| MS.gene057014 | MS.gene55961 | 0.808426 | 3.12E-50 | -1.69E-46 |
| MS.gene057549 | MS.gene55961 | 0.827864 | 1.24E-54 | -1.69E-46 |
| MS.gene058067 | MS.gene55961 | 0.820261 | 7.53E-53 | -1.69E-46 |
| MS.gene058068 | MS.gene55961 | 0.837165 | 6.11E-57 | -1.69E-46 |
| MS.gene058099 | MS.gene55961 | 0.846183 | 2.55E-59 | -1.69E-46 |
| MS.gene058109 | MS.gene55961 | 0.82785 | 1.25E-54 | -1.69E-46 |
| MS.gene058111 | MS.gene55961 | 0.800173 | 1.63E-48 | -1.69E-46 |
| MS.gene058117 | MS.gene55961 | 0.806457 | 8.15E-50 | -1.69E-46 |
| MS.gene058171 | MS.gene55961 | 0.800279 | 1.55E-48 | -1.69E-46 |
| MS.gene058175 | MS.gene55961 | 0.803218 | 3.87E-49 | -1.69E-46 |
| MS.gene058268 | MS.gene55961 | 0.988034 | 1.84E-172 | -1.69E-46 |
| MS.gene058269 | MS.gene55961 | 0.970316 | 1.97E-131 | -1.69E-46 |
| MS.gene058334 | MS.gene55961 | 0.803452 | 3.46E-49 | -1.69E-46 |
| MS.gene058419 | MS.gene55961 | -0.805458 | 1.32E-49 | -1.69E-46 |
| MS.gene058628 | MS.gene55961 | 0.812491 | 4.13E-51 | -1.69E-46 |
| MS.gene058630 | MS.gene55961 | 0.807336 | 5.31E-50 | -1.69E-46 |
| MS.gene059022 | MS.gene55961 | -0.834106 | 3.63E-56 | -1.69E-46 |
| MS.gene059045 | MS.gene55961 | 0.816297 | 5.95E-52 | -1.69E-46 |
| MS.gene059315 | MS.gene55961 | 0.806919 | 6.51E-50 | -1.69E-46 |
| MS.gene059677 | MS.gene55961 | -0.817711 | 2.86E-52 | -1.69E-46 |
| MS.gene059718 | MS.gene55961 | -0.803663 | 3.13E-49 | -1.69E-46 |
| MS.gene059865 | MS.gene55961 | -0.837731 | 4.37E-57 | -1.69E-46 |
| MS.gene059953 | MS.gene55961 | 0.809917 | 1.49E-50 | -1.69E-46 |
| MS.gene060096 | MS.gene55961 | 0.812782 | 3.57E-51 | -1.69E-46 |
| MS.gene060595 | MS.gene55961 | 0.826034 | 3.38E-54 | -1.69E-46 |
| MS.gene060703 | MS.gene55961 | -0.804153 | 2.48E-49 | -1.69E-46 |
| MS.gene060762 | MS.gene55961 | -0.812647 | 3.82E-51 | -1.69E-46 |
| MS.gene060778 | MS.gene55961 | -0.81668 | 4.88E-52 | -1.69E-46 |
| MS.gene06077 | MS.gene55961 | -0.818459 | 1.94E-52 | -1.69E-46 |
| MS.gene060982 | MS.gene55961 | -0.810472 | 1.13E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene55961.t1 | MTR_2g033550 | 94.613 | 297 | 16 | 0 | 1 | 297 | 1 | 297 | 0.0 | 573 |
| MS.gene55961.t1 | MTR_2g033580 | 77.667 | 300 | 60 | 2 | 1 | 294 | 1 | 299 | 2.17e-172 | 479 |
| MS.gene55961.t1 | MTR_2g033520 | 69.868 | 302 | 77 | 3 | 1 | 294 | 1 | 296 | 5.46e-144 | 407 |
| MS.gene55961.t1 | MTR_4g122940 | 67.918 | 293 | 75 | 4 | 11 | 291 | 6 | 291 | 3.63e-134 | 382 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene55961.t1 | AT1G47980 | 64.583 | 288 | 85 | 2 | 20 | 295 | 28 | 310 | 8.97e-124 | 356 |
| MS.gene55961.t1 | AT3G62730 | 54.915 | 295 | 120 | 2 | 13 | 294 | 7 | 301 | 2.38e-101 | 300 |
| MS.gene55961.t1 | AT3G62730 | 53.416 | 161 | 72 | 1 | 26 | 186 | 23 | 180 | 2.81e-51 | 168 |
Find 75 sgRNAs with CRISPR-Local
Find 106 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCCTCTTAATTTAGAATATT+TGG | 0.125218 | 2.3:-57001773 | MS.gene55961:CDS |
| TGTACCCAGTTTGGCCATTT+TGG | 0.134807 | 2.3:+57001660 | None:intergenic |
| CATGAATAAGAACATGATTT+TGG | 0.148146 | 2.3:+57001841 | None:intergenic |
| CAGCTAGTTGCAGGCCTTCT+AGG | 0.184241 | 2.3:-57000891 | MS.gene55961:CDS |
| TCATCATCTGAAAATGTTTC+TGG | 0.229501 | 2.3:+57001808 | None:intergenic |
| AAGGATATTATCTTGCAATT+TGG | 0.237243 | 2.3:-57001631 | MS.gene55961:CDS |
| CAAACTGGGTACATTTATTA+AGG | 0.242603 | 2.3:-57001650 | MS.gene55961:CDS |
| CCCACCTATTGGGGCCAAAA+TGG | 0.283148 | 2.3:-57001674 | MS.gene55961:CDS |
| TGGGGCCAAAATGGCCAAAC+TGG | 0.309884 | 2.3:-57001665 | MS.gene55961:CDS |
| TCCAAATATTCTAAATTAAG+AGG | 0.316594 | 2.3:+57001772 | None:intergenic |
| TCAGCGCTTAGGAATGAATT+AGG | 0.319413 | 2.3:-57000762 | MS.gene55961:CDS |
| CTTAATAAATGTACCCAGTT+TGG | 0.325391 | 2.3:+57001651 | None:intergenic |
| ATTCCTTATGTCGGTCTTAC+CGG | 0.330047 | 2.3:-57001283 | MS.gene55961:CDS |
| GAAATATTGAGAATTGTATA+TGG | 0.347955 | 2.3:-57000654 | MS.gene55961:CDS |
| ACAATTCTCAATATTTCAAT+TGG | 0.353451 | 2.3:+57000660 | None:intergenic |
| ATCTCAGGAAATATCCTTGC+TGG | 0.373800 | 2.3:-57000714 | MS.gene55961:CDS |
| TTGACTCTCTTGATGTAATT+CGG | 0.375624 | 2.3:+57001904 | None:intergenic |
| CAATTTGGTTTGCAAGAAGT+TGG | 0.389960 | 2.3:-57001616 | MS.gene55961:CDS |
| GCATGGAAGGTGTATCCTTA+TGG | 0.391268 | 2.3:-57000816 | MS.gene55961:CDS |
| TGGATTGGATGTAGTTGATT+CGG | 0.408733 | 2.3:-57001716 | MS.gene55961:CDS |
| CTTAGATCCATACATGGCCT+TGG | 0.431043 | 2.3:+57001412 | None:intergenic |
| AAGTTGACATCATTTGCATA+TGG | 0.448703 | 2.3:+57001325 | None:intergenic |
| GGGGTTCCCAAGGCCATGTA+TGG | 0.457536 | 2.3:-57001419 | MS.gene55961:CDS |
| GGCCTTCTAGGAGTGGAATC+AGG | 0.458196 | 2.3:-57000879 | MS.gene55961:CDS |
| GGCCTGATTCCACTCCTAGA+AGG | 0.458732 | 2.3:+57000877 | None:intergenic |
| TCATTTGCATATGGATCAAA+AGG | 0.461244 | 2.3:+57001334 | None:intergenic |
| AGCAAGGATATTTCCTGAGA+TGG | 0.467561 | 2.3:+57000716 | None:intergenic |
| AAGGTGATGGATAGTGCCTT+TGG | 0.473626 | 2.3:-57001373 | MS.gene55961:CDS |
| TGCAAGAAGTTGGACATTTG+AGG | 0.477314 | 2.3:-57001606 | MS.gene55961:intron |
| TGGATCATTAGGTCATGGAT+TGG | 0.491581 | 2.3:-57001731 | MS.gene55961:CDS |
| TCCTACAAAATGCTACTTCG+AGG | 0.497607 | 2.3:-57001240 | MS.gene55961:CDS |
| GTCGGTCTTACCGGCTATGT+TGG | 0.505513 | 2.3:-57001274 | MS.gene55961:CDS |
| TCTGCCACAGTTACTCCATA+AGG | 0.507698 | 2.3:+57000801 | None:intergenic |
| TTAGATCCATACATGGCCTT+GGG | 0.510288 | 2.3:+57001413 | None:intergenic |
| CTAATCGCATCTCAGCGCTT+AGG | 0.514135 | 2.3:-57000773 | MS.gene55961:CDS |
| GCTATAAAGAGCACAGTGAA+GGG | 0.515388 | 2.3:-57001439 | MS.gene55961:CDS |
| ATCATCATTTGCCAAGGTGA+TGG | 0.516251 | 2.3:-57001386 | MS.gene55961:CDS |
| CCTCTAGGGTAGAAGCCACC+TGG | 0.517093 | 2.3:+57000612 | None:intergenic |
| ATAACACCATCTCCTCCTCT+AGG | 0.519512 | 2.3:+57000597 | None:intergenic |
| ATAAAAGATGAACCCATCTC+AGG | 0.525491 | 2.3:-57000729 | MS.gene55961:CDS |
| GGCTATAAAGAGCACAGTGA+AGG | 0.527779 | 2.3:-57001440 | MS.gene55961:CDS |
| GCAAGGATATTTCCTGAGAT+GGG | 0.529908 | 2.3:+57000717 | None:intergenic |
| GGATCAAAAGGTGGGTGTAG+AGG | 0.531869 | 2.3:+57001346 | None:intergenic |
| TTATTTGGATCATTAGGTCA+TGG | 0.533706 | 2.3:-57001736 | MS.gene55961:CDS |
| TGTTATACGAACGACGTGCA+TGG | 0.542914 | 2.3:-57000833 | MS.gene55961:CDS |
| TGGATTGGTGCCAACATAGC+CGG | 0.545039 | 2.3:+57001264 | None:intergenic |
| TTGAGAATTGTATATGGAAG+TGG | 0.548661 | 2.3:-57000648 | MS.gene55961:CDS |
| GTTGATTCGGATTTAGCAGA+GGG | 0.554995 | 2.3:-57001703 | MS.gene55961:CDS |
| ATACGAACGACGTGCATGGA+AGG | 0.556244 | 2.3:-57000829 | MS.gene55961:CDS |
| TTCTACCCTAGAGGAGGAGA+TGG | 0.561993 | 2.3:-57000603 | MS.gene55961:CDS |
| ATGATCGTATAACTGCATCT+TGG | 0.571142 | 2.3:+57000856 | None:intergenic |
| TAGCCGGTAAGACCGACATA+AGG | 0.572610 | 2.3:+57001280 | None:intergenic |
| CTCTAGGGTAGAAGCCACCT+GGG | 0.572783 | 2.3:+57000613 | None:intergenic |
| GATTCGGATTTAGCAGAGGG+TGG | 0.575302 | 2.3:-57001700 | MS.gene55961:CDS |
| TCTTATGTGATTCCTTATGT+CGG | 0.575588 | 2.3:-57001292 | MS.gene55961:CDS |
| TTTGCATATGGATCAAAAGG+TGG | 0.585853 | 2.3:+57001337 | None:intergenic |
| TCATCTGAAAATGTTTCTGG+TGG | 0.587819 | 2.3:+57001811 | None:intergenic |
| AGTGGTGATGAACATGTCCC+AGG | 0.596378 | 2.3:-57000630 | MS.gene55961:CDS |
| TAACACCATCTCCTCCTCTA+GGG | 0.597219 | 2.3:+57000598 | None:intergenic |
| ACAAAATGCTACTTCGAGGA+AGG | 0.597559 | 2.3:-57001236 | MS.gene55961:intron |
| CCAGGTGGCTTCTACCCTAG+AGG | 0.599664 | 2.3:-57000612 | MS.gene55961:CDS |
| GCACAGTGAAGGGGTTCCCA+AGG | 0.602015 | 2.3:-57001429 | MS.gene55961:CDS |
| AGTTGCAGGCCTTCTAGGAG+TGG | 0.603562 | 2.3:-57000886 | MS.gene55961:CDS |
| AAAGGCAAGCAAAACAACAA+TGG | 0.606116 | 2.3:+57001876 | None:intergenic |
| GGGGCCAAAATGGCCAAACT+GGG | 0.606123 | 2.3:-57001664 | MS.gene55961:CDS |
| TTGCATATGGATCAAAAGGT+GGG | 0.620461 | 2.3:+57001338 | None:intergenic |
| AAGCTCATCATCATTTGCCA+AGG | 0.621976 | 2.3:-57001392 | MS.gene55961:CDS |
| AAAGGCACTATCCATCACCT+TGG | 0.631525 | 2.3:+57001375 | None:intergenic |
| AGGAATGAATTAGGAAACGA+TGG | 0.646376 | 2.3:-57000753 | MS.gene55961:CDS |
| GATGAGCTTAGATCCATACA+TGG | 0.648355 | 2.3:+57001406 | None:intergenic |
| AGTTGATTCGGATTTAGCAG+AGG | 0.651747 | 2.3:-57001704 | MS.gene55961:CDS |
| GGTGGCTTCTACCCTAGAGG+AGG | 0.663458 | 2.3:-57000609 | MS.gene55961:CDS |
| CTATAAAGAGCACAGTGAAG+GGG | 0.666124 | 2.3:-57001438 | MS.gene55961:CDS |
| GTATCCTTATGGAGTAACTG+TGG | 0.688628 | 2.3:-57000805 | MS.gene55961:CDS |
| GGTGATGAACATGTCCCAGG+TGG | 0.767815 | 2.3:-57000627 | MS.gene55961:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AACATTAAAATTATTTTAGT+AGG | + | chr2.3:57001555-57001574 | None:intergenic | 10.0% |
| !!! | TTGTATGAATCTTTATTTTA+GGG | - | chr2.3:57001018-57001037 | MS.gene55961:intron | 15.0% |
| !! | ACAATTCTCAATATTTCAAT+TGG | + | chr2.3:57001822-57001841 | None:intergenic | 20.0% |
| !! | GAAATATTGAGAATTGTATA+TGG | - | chr2.3:57001825-57001844 | MS.gene55961:CDS | 20.0% |
| !! | GTTTACAAAACTAACTTAAA+AGG | + | chr2.3:57001473-57001492 | None:intergenic | 20.0% |
| !! | TCCAAATATTCTAAATTAAG+AGG | + | chr2.3:57000710-57000729 | None:intergenic | 20.0% |
| !!! | ACTTGTTAGTAATAAAAGAA+TGG | - | chr2.3:57001328-57001347 | MS.gene55961:CDS | 20.0% |
| !!! | ATGAATAAGAACATGATTTT+GGG | + | chr2.3:57000640-57000659 | None:intergenic | 20.0% |
| !!! | ATGATAAAAAAAGTACTAGA+GGG | + | chr2.3:57000901-57000920 | None:intergenic | 20.0% |
| !!! | GTTGTATGAATCTTTATTTT+AGG | - | chr2.3:57001017-57001036 | MS.gene55961:intron | 20.0% |
| !!! | GTTTTACTCGAAAATAAATA+AGG | - | chr2.3:57001422-57001441 | MS.gene55961:CDS | 20.0% |
| !!! | TCCTCTTAATTTAGAATATT+TGG | - | chr2.3:57000706-57000725 | MS.gene55961:CDS | 20.0% |
| !!! | TTCTTTTTATTTGGATCATT+AGG | - | chr2.3:57000737-57000756 | MS.gene55961:CDS | 20.0% |
| ! | AAGGATATTATCTTGCAATT+TGG | - | chr2.3:57000848-57000867 | MS.gene55961:CDS | 25.0% |
| !! | CATGAATAAGAACATGATTT+TGG | + | chr2.3:57000641-57000660 | None:intergenic | 25.0% |
| !! | GAAGCTGAATTCTTTTTATT+TGG | - | chr2.3:57000728-57000747 | MS.gene55961:CDS | 25.0% |
| !!! | ATTCACTTGCGATTTTATTT+AGG | - | chr2.3:57001389-57001408 | MS.gene55961:CDS | 25.0% |
| !!! | GATGATAAAAAAAGTACTAG+AGG | + | chr2.3:57000902-57000921 | None:intergenic | 25.0% |
| AAGTTGACATCATTTGCATA+TGG | + | chr2.3:57001157-57001176 | None:intergenic | 30.0% | |
| CAAACTGGGTACATTTATTA+AGG | - | chr2.3:57000829-57000848 | MS.gene55961:CDS | 30.0% | |
| CTTAATAAATGTACCCAGTT+TGG | + | chr2.3:57000831-57000850 | None:intergenic | 30.0% | |
| TCATCATCTGAAAATGTTTC+TGG | + | chr2.3:57000674-57000693 | None:intergenic | 30.0% | |
| TCATTTGCATATGGATCAAA+AGG | + | chr2.3:57001148-57001167 | None:intergenic | 30.0% | |
| TCTTATGTGATTCCTTATGT+CGG | - | chr2.3:57001187-57001206 | MS.gene55961:intron | 30.0% | |
| TTATTTGGATCATTAGGTCA+TGG | - | chr2.3:57000743-57000762 | MS.gene55961:CDS | 30.0% | |
| TTGACTCTCTTGATGTAATT+CGG | + | chr2.3:57000578-57000597 | None:intergenic | 30.0% | |
| TTGAGAATTGTATATGGAAG+TGG | - | chr2.3:57001831-57001850 | MS.gene55961:CDS | 30.0% | |
| AAAGGCAAGCAAAACAACAA+TGG | + | chr2.3:57000606-57000625 | None:intergenic | 35.0% | |
| AGGAATGAATTAGGAAACGA+TGG | - | chr2.3:57001726-57001745 | MS.gene55961:CDS | 35.0% | |
| ATAAAAGATGAACCCATCTC+AGG | - | chr2.3:57001750-57001769 | MS.gene55961:CDS | 35.0% | |
| ATGATCGTATAACTGCATCT+TGG | + | chr2.3:57001626-57001645 | None:intergenic | 35.0% | |
| TTGCATATGGATCAAAAGGT+GGG | + | chr2.3:57001144-57001163 | None:intergenic | 35.0% | |
| TTTGCATATGGATCAAAAGG+TGG | + | chr2.3:57001145-57001164 | None:intergenic | 35.0% | |
| ! | TGGATTGGATGTAGTTGATT+CGG | - | chr2.3:57000763-57000782 | MS.gene55961:CDS | 35.0% |
| !! | CAATTTGGTTTGCAAGAAGT+TGG | - | chr2.3:57000863-57000882 | MS.gene55961:CDS | 35.0% |
| !! | GAATTTTAACAGCTAGTTGC+AGG | - | chr2.3:57001579-57001598 | MS.gene55961:intron | 35.0% |
| !! | TCATCTGAAAATGTTTCTGG+TGG | + | chr2.3:57000671-57000690 | None:intergenic | 35.0% |
| !!! | AGAACATGATTTTGGGATCA+AGG | + | chr2.3:57000633-57000652 | None:intergenic | 35.0% |
| AAGCTCATCATCATTTGCCA+AGG | - | chr2.3:57001087-57001106 | MS.gene55961:intron | 40.0% | |
| AGCAAGGATATTTCCTGAGA+TGG | + | chr2.3:57001766-57001785 | None:intergenic | 40.0% | |
| AGTGAATAACACGCGTCAAT+CGG | + | chr2.3:57001376-57001395 | None:intergenic | 40.0% | |
| ATCATCATTTGCCAAGGTGA+TGG | - | chr2.3:57001093-57001112 | MS.gene55961:intron | 40.0% | |
| ATCTCAGGAAATATCCTTGC+TGG | - | chr2.3:57001765-57001784 | MS.gene55961:CDS | 40.0% | |
| ATTCCTTATGTCGGTCTTAC+CGG | - | chr2.3:57001196-57001215 | MS.gene55961:intron | 40.0% | |
| GATGAGCTTAGATCCATACA+TGG | + | chr2.3:57001076-57001095 | None:intergenic | 40.0% | |
| GCAAGGATATTTCCTGAGAT+GGG | + | chr2.3:57001765-57001784 | None:intergenic | 40.0% | |
| GTATCCTTATGGAGTAACTG+TGG | - | chr2.3:57001674-57001693 | MS.gene55961:CDS | 40.0% | |
| TCAGCGCTTAGGAATGAATT+AGG | - | chr2.3:57001717-57001736 | MS.gene55961:CDS | 40.0% | |
| TGCAAGAAGTTGGACATTTG+AGG | - | chr2.3:57000873-57000892 | MS.gene55961:CDS | 40.0% | |
| TGGATCATTAGGTCATGGAT+TGG | - | chr2.3:57000748-57000767 | MS.gene55961:CDS | 40.0% | |
| TTAGATCCATACATGGCCTT+GGG | + | chr2.3:57001069-57001088 | None:intergenic | 40.0% | |
| ! | ACAAAATGCTACTTCGAGGA+AGG | - | chr2.3:57001243-57001262 | MS.gene55961:CDS | 40.0% |
| ! | AGCATTTTGTAGGAGTGGAT+TGG | + | chr2.3:57001233-57001252 | None:intergenic | 40.0% |
| ! | CTATAAAGAGCACAGTGAAG+GGG | - | chr2.3:57001041-57001060 | MS.gene55961:intron | 40.0% |
| ! | GAAGTAGCATTTTGTAGGAG+TGG | + | chr2.3:57001238-57001257 | None:intergenic | 40.0% |
| ! | GCTATAAAGAGCACAGTGAA+GGG | - | chr2.3:57001040-57001059 | MS.gene55961:intron | 40.0% |
| ! | GTGAATTTTCATCACCAGCA+AGG | + | chr2.3:57001782-57001801 | None:intergenic | 40.0% |
| ! | TCCTACAAAATGCTACTTCG+AGG | - | chr2.3:57001239-57001258 | MS.gene55961:CDS | 40.0% |
| ! | TCCTCGAAGTAGCATTTTGT+AGG | + | chr2.3:57001243-57001262 | None:intergenic | 40.0% |
| !! | AGTTGATTCGGATTTAGCAG+AGG | - | chr2.3:57000775-57000794 | MS.gene55961:CDS | 40.0% |
| !! | GTTGATTCGGATTTAGCAGA+GGG | - | chr2.3:57000776-57000795 | MS.gene55961:CDS | 40.0% |
| !!! | TTTTGGGATCAAGGTGAGAA+AGG | + | chr2.3:57000624-57000643 | None:intergenic | 40.0% |
| AGTAGGTCGCGATGAAATCA+TGG | + | chr2.3:57001538-57001557 | None:intergenic | 45.0% | |
| ATAACACCATCTCCTCCTCT+AGG | + | chr2.3:57001885-57001904 | None:intergenic | 45.0% | |
| CTTAGATCCATACATGGCCT+TGG | + | chr2.3:57001070-57001089 | None:intergenic | 45.0% | |
| GTGAATAACACGCGTCAATC+GGG | + | chr2.3:57001375-57001394 | None:intergenic | 45.0% | |
| TAACACCATCTCCTCCTCTA+GGG | + | chr2.3:57001884-57001903 | None:intergenic | 45.0% | |
| TCTGCCACAGTTACTCCATA+AGG | + | chr2.3:57001681-57001700 | None:intergenic | 45.0% | |
| TGTTATACGAACGACGTGCA+TGG | - | chr2.3:57001646-57001665 | MS.gene55961:CDS | 45.0% | |
| ! | GCATGGAAGGTGTATCCTTA+TGG | - | chr2.3:57001663-57001682 | MS.gene55961:CDS | 45.0% |
| ! | GGCTATAAAGAGCACAGTGA+AGG | - | chr2.3:57001039-57001058 | MS.gene55961:intron | 45.0% |
| ! | TGGGTGTAGAGGTTTTCCAA+AGG | + | chr2.3:57001125-57001144 | None:intergenic | 45.0% |
| ! | TGTACCCAGTTTGGCCATTT+TGG | + | chr2.3:57000822-57000841 | None:intergenic | 45.0% |
| !! | AAAGGCACTATCCATCACCT+TGG | + | chr2.3:57001107-57001126 | None:intergenic | 45.0% |
| !! | AAGGTGATGGATAGTGCCTT+TGG | - | chr2.3:57001106-57001125 | MS.gene55961:intron | 45.0% |
| ATACGAACGACGTGCATGGA+AGG | - | chr2.3:57001650-57001669 | MS.gene55961:CDS | 50.0% | |
| CTAATCGCATCTCAGCGCTT+AGG | - | chr2.3:57001706-57001725 | MS.gene55961:CDS | 50.0% | |
| GATTCGGATTTAGCAGAGGG+TGG | - | chr2.3:57000779-57000798 | MS.gene55961:CDS | 50.0% | |
| GGATCAAAAGGTGGGTGTAG+AGG | + | chr2.3:57001136-57001155 | None:intergenic | 50.0% | |
| TAGCCGGTAAGACCGACATA+AGG | + | chr2.3:57001202-57001221 | None:intergenic | 50.0% | |
| TTCTACCCTAGAGGAGGAGA+TGG | - | chr2.3:57001876-57001895 | MS.gene55961:CDS | 50.0% | |
| ! | AGTGGTGATGAACATGTCCC+AGG | - | chr2.3:57001849-57001868 | MS.gene55961:CDS | 50.0% |
| !! | ATTTTGGCCCCAATAGGTGG+GGG | + | chr2.3:57000806-57000825 | None:intergenic | 50.0% |
| !! | CATTTTGGCCCCAATAGGTG+GGG | + | chr2.3:57000807-57000826 | None:intergenic | 50.0% |
| !! | CCATTTTGGCCCCAATAGGT+GGG | + | chr2.3:57000808-57000827 | None:intergenic | 50.0% |
| !! | TGGATTGGTGCCAACATAGC+CGG | + | chr2.3:57001218-57001237 | None:intergenic | 50.0% |
| !! | TTGGCCATTTTGGCCCCAAT+AGG | + | chr2.3:57000812-57000831 | None:intergenic | 50.0% |
| CAGCTAGTTGCAGGCCTTCT+AGG | - | chr2.3:57001588-57001607 | MS.gene55961:intron | 55.0% | |
| CCCACCTATTGGGGCCAAAA+TGG | - | chr2.3:57000805-57000824 | MS.gene55961:CDS | 55.0% | |
| GGCCTGATTCCACTCCTAGA+AGG | + | chr2.3:57001605-57001624 | None:intergenic | 55.0% | |
| GGGGCCAAAATGGCCAAACT+GGG | - | chr2.3:57000815-57000834 | MS.gene55961:CDS | 55.0% | |
| GGTGATGAACATGTCCCAGG+TGG | - | chr2.3:57001852-57001871 | MS.gene55961:CDS | 55.0% | |
| TGGGGCCAAAATGGCCAAAC+TGG | - | chr2.3:57000814-57000833 | MS.gene55961:CDS | 55.0% | |
| ! | AGTTGCAGGCCTTCTAGGAG+TGG | - | chr2.3:57001593-57001612 | MS.gene55961:intron | 55.0% |
| ! | GGCCTTCTAGGAGTGGAATC+AGG | - | chr2.3:57001600-57001619 | MS.gene55961:intron | 55.0% |
| ! | GTCGGTCTTACCGGCTATGT+TGG | - | chr2.3:57001205-57001224 | MS.gene55961:intron | 55.0% |
| !! | CTCTAGGGTAGAAGCCACCT+GGG | + | chr2.3:57001869-57001888 | None:intergenic | 55.0% |
| !! | GCCATTTTGGCCCCAATAGG+TGG | + | chr2.3:57000809-57000828 | None:intergenic | 55.0% |
| AGGGTGGACCCCCACCTATT+GGG | - | chr2.3:57000795-57000814 | MS.gene55961:CDS | 60.0% | |
| CCAGGTGGCTTCTACCCTAG+AGG | - | chr2.3:57001867-57001886 | MS.gene55961:CDS | 60.0% | |
| GCACAGTGAAGGGGTTCCCA+AGG | - | chr2.3:57001050-57001069 | MS.gene55961:intron | 60.0% | |
| GGGGTTCCCAAGGCCATGTA+TGG | - | chr2.3:57001060-57001079 | MS.gene55961:intron | 60.0% | |
| GGTGGCTTCTACCCTAGAGG+AGG | - | chr2.3:57001870-57001889 | MS.gene55961:CDS | 60.0% | |
| !! | CCTCTAGGGTAGAAGCCACC+TGG | + | chr2.3:57001870-57001889 | None:intergenic | 60.0% |
| GAGGGTGGACCCCCACCTAT+TGG | - | chr2.3:57000794-57000813 | MS.gene55961:CDS | 65.0% | |
| GGGTGGACCCCCACCTATTG+GGG | - | chr2.3:57000796-57000815 | MS.gene55961:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2.3 | gene | 57000569 | 57001932 | 57000569 | ID=MS.gene55961 |
| chr2.3 | mRNA | 57000569 | 57001932 | 57000569 | ID=MS.gene55961.t1;Parent=MS.gene55961 |
| chr2.3 | exon | 57001607 | 57001932 | 57001607 | ID=MS.gene55961.t1.exon1;Parent=MS.gene55961.t1 |
| chr2.3 | CDS | 57001607 | 57001932 | 57001607 | ID=cds.MS.gene55961.t1;Parent=MS.gene55961.t1 |
| chr2.3 | exon | 57001237 | 57001462 | 57001237 | ID=MS.gene55961.t1.exon2;Parent=MS.gene55961.t1 |
| chr2.3 | CDS | 57001237 | 57001462 | 57001237 | ID=cds.MS.gene55961.t1;Parent=MS.gene55961.t1 |
| chr2.3 | exon | 57000569 | 57000910 | 57000569 | ID=MS.gene55961.t1.exon3;Parent=MS.gene55961.t1 |
| chr2.3 | CDS | 57000569 | 57000910 | 57000569 | ID=cds.MS.gene55961.t1;Parent=MS.gene55961.t1 |
| Gene Sequence |
| Protein sequence |
