AlfalfaGEDB | MS.gene55961

M. sativa cultivar XinJiangDaYe / MS.gene55961

KEGG: -
GO: -
PFAM: PF13668.9

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene55961.t1	XP_003594693.1	94.6	297	16	0	1	297	1	297	2.90E-161	577.8

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene55961.t1	P22242	57.9	292	107	4	11	287	8	298	5.9e-86	318.9

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene55961.t1	A2Q669	94.6	297	16	0	1	297	1	297	2.1e-161	577.8

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049171	MS.gene55961	-0.800112	1.68E-48	-1.69E-46
MS.gene049232	MS.gene55961	-0.805393	1.36E-49	-1.69E-46
MS.gene049259	MS.gene55961	0.801109	1.05E-48	-1.69E-46
MS.gene049281	MS.gene55961	0.849887	2.42E-60	-1.69E-46
MS.gene049285	MS.gene55961	-0.806519	7.91E-50	-1.69E-46
MS.gene049320	MS.gene55961	-0.822998	1.76E-53	-1.69E-46
MS.gene049611	MS.gene55961	0.827309	1.68E-54	-1.69E-46
MS.gene050082	MS.gene55961	0.830149	3.46E-55	-1.69E-46
MS.gene05010	MS.gene55961	-0.801016	1.10E-48	-1.69E-46
MS.gene050165	MS.gene55961	-0.802671	5.02E-49	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene55961.t1	MTR_2g033550	94.613	297	16	0	1	297	1	297	0.0	573
MS.gene55961.t1	MTR_2g033580	77.667	300	60	2	1	294	1	299	2.17e-172	479
MS.gene55961.t1	MTR_2g033520	69.868	302	77	3	1	294	1	296	5.46e-144	407
MS.gene55961.t1	MTR_4g122940	67.918	293	75	4	11	291	6	291	3.63e-134	382

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene55961.t1	AT1G47980	64.583	288	85	2	20	295	28	310	8.97e-124	356
MS.gene55961.t1	AT3G62730	54.915	295	120	2	13	294	7	301	2.38e-101	300
MS.gene55961.t1	AT3G62730	53.416	161	72	1	26	186	23	180	2.81e-51	168

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Find 75 sgRNAs with CRISPR-Local

Find 106 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGGCAAGCAAAACAACAA+TGG	0.606116	2.3:+57001876	None:intergenic
AAAGGCACTATCCATCACCT+TGG	0.631525	2.3:+57001375	None:intergenic
AAGCTCATCATCATTTGCCA+AGG	0.621976	2.3:-57001392	MS.gene55961:CDS
AAGGATATTATCTTGCAATT+TGG	0.237243	2.3:-57001631	MS.gene55961:CDS
AAGGTGATGGATAGTGCCTT+TGG	0.473626	2.3:-57001373	MS.gene55961:CDS
AAGTTGACATCATTTGCATA+TGG	0.448703	2.3:+57001325	None:intergenic
ACAAAATGCTACTTCGAGGA+AGG	0.597559	2.3:-57001236	MS.gene55961:intron
ACAATTCTCAATATTTCAAT+TGG	0.353451	2.3:+57000660	None:intergenic
AGCAAGGATATTTCCTGAGA+TGG	0.467561	2.3:+57000716	None:intergenic
AGGAATGAATTAGGAAACGA+TGG	0.646376	2.3:-57000753	MS.gene55961:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAGTTGACATCATTTGCATA+TGG	+	chr2.3:57001157-57001176	None:intergenic	30.0%
CAAACTGGGTACATTTATTA+AGG	-	chr2.3:57000829-57000848	MS.gene55961:CDS	30.0%
CTTAATAAATGTACCCAGTT+TGG	+	chr2.3:57000831-57000850	None:intergenic	30.0%
TCATCATCTGAAAATGTTTC+TGG	+	chr2.3:57000674-57000693	None:intergenic	30.0%
TCATTTGCATATGGATCAAA+AGG	+	chr2.3:57001148-57001167	None:intergenic	30.0%
TCTTATGTGATTCCTTATGT+CGG	-	chr2.3:57001187-57001206	MS.gene55961:intron	30.0%
TTATTTGGATCATTAGGTCA+TGG	-	chr2.3:57000743-57000762	MS.gene55961:CDS	30.0%
TTGACTCTCTTGATGTAATT+CGG	+	chr2.3:57000578-57000597	None:intergenic	30.0%
TTGAGAATTGTATATGGAAG+TGG	-	chr2.3:57001831-57001850	MS.gene55961:CDS	30.0%
AAAGGCAAGCAAAACAACAA+TGG	+	chr2.3:57000606-57000625	None:intergenic	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2.3	gene	57000569	57001932	57000569	ID=MS.gene55961
chr2.3	mRNA	57000569	57001932	57000569	ID=MS.gene55961.t1;Parent=MS.gene55961
chr2.3	exon	57001607	57001932	57001607	ID=MS.gene55961.t1.exon1;Parent=MS.gene55961.t1
chr2.3	CDS	57001607	57001932	57001607	ID=cds.MS.gene55961.t1;Parent=MS.gene55961.t1
chr2.3	exon	57001237	57001462	57001237	ID=MS.gene55961.t1.exon2;Parent=MS.gene55961.t1
chr2.3	CDS	57001237	57001462	57001237	ID=cds.MS.gene55961.t1;Parent=MS.gene55961.t1
chr2.3	exon	57000569	57000910	57000569	ID=MS.gene55961.t1.exon3;Parent=MS.gene55961.t1
chr2.3	CDS	57000569	57000910	57000569	ID=cds.MS.gene55961.t1;Parent=MS.gene55961.t1

Gene Sequence

>MS.gene55961

ATGGCACCGAATTACATCAAGAGAGTCAAAGCTTCCATTGTTGTTTTGCTTGCCTTTCTCACCTTGATCCCAAAATCATGTTCTTATTCATGCTGCACTCCACCAGAAACATTTTCAGATGATGATCTTCTTGAATTTCCTCTTAATTTAGAATATTTGGAAGCTGAATTCTTTTTATTTGGATCATTAGGTCATGGATTGGATGTAGTTGATTCGGATTTAGCAGAGGGTGGACCCCCACCTATTGGGGCCAAAATGGCCAAACTGGGTACATTTATTAAGGATATTATCTTGCAATTTGGTTTGCAAGAAGTTGGACATTTGAGGTACCCTCTAGTACTTTTTTTATCATCATCTCTTTCGTACTTTTTGAATCTTATAATTTGACATATATAGTGTTTTATTATGTCAATATATCTTGAGAGTCAAGTTTATTGTTTAAAGTGAAGTTGTATGAATCTTTATTTTAGGGCTATAAAGAGCACAGTGAAGGGGTTCCCAAGGCCATGTATGGATCTAAGCTCATCATCATTTGCCAAGGTGATGGATAGTGCCTTTGGAAAACCTCTACACCCACCTTTTGATCCATATGCAAATGATGTCAACTTTCTGCTTGCATCTTATGTGATTCCTTATGTCGGTCTTACCGGCTATGTTGGCACCAATCCACTCCTACAAAATGCTACTTCGAGGAAGGTATATCATCATACTCATCATATTAAAACTTTTCAAAACTATAGAAAAATCGATCAAGCATGTACTTGTTAGTAATAAAAGAATGGCACAATTCTATTTAAAAAATACCCGATTGACGCGTGTTATTCACTTGCGATTTTATTTAGGAAAATTTCAAGTTTTACTCGAAAATAAATAAGGCTGAAAATAGTTTATTAATAGATCACCTTTTAAGTTAGTTTTGTAAACATTAGTTAGACTCGATATAAAAAACTTCATAATTTTTTTTTACCATGATTTCATCGCGACCTACTAAAATAATTTTAATGTTGTGTGAATTTTAACAGCTAGTTGCAGGCCTTCTAGGAGTGGAATCAGGCCAAGATGCAGTTATACGATCATTGTTATACGAACGACGTGCATGGAAGGTGTATCCTTATGGAGTAACTGTGGCAGAGTTCACTAATCGCATCTCAGCGCTTAGGAATGAATTAGGAAACGATGGTATAAAAGATGAACCCATCTCAGGAAATATCCTTGCTGGTGATGAAAATTCACTATCATATTCAAGAACTCCAATTGAAATATTGAGAATTGTATATGGAAGTGGTGATGAACATGTCCCAGGTGGCTTCTACCCTAGAGGAGGAGATGGTGTTATAGCAAAATCTTACTTAGTACTTAATTAG

Protein sequence

>MS.gene55961.t1

MAPNYIKRVKASIVVLLAFLTLIPKSCSYSCCTPPETFSDDDLLEFPLNLEYLEAEFFLFGSLGHGLDVVDSDLAEGGPPPIGAKMAKLGTFIKDIILQFGLQEVGHLRAIKSTVKGFPRPCMDLSSSSFAKVMDSAFGKPLHPPFDPYANDVNFLLASYVIPYVGLTGYVGTNPLLQNATSRKLVAGLLGVESGQDAVIRSLLYERRAWKVYPYGVTVAEFTNRISALRNELGNDGIKDEPISGNILAGDENSLSYSRTPIEILRIVYGSGDEHVPGGFYPRGGDGVIAKSYLVLN