AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene61192


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene61192.t1 MTR_4g097175 100.000 136 0 0 1 136 1 136 1.33e-96 274
MS.gene61192.t1 MTR_1g023630 100.000 136 0 0 1 136 1 136 1.33e-96 274
MS.gene61192.t1 MTR_8g061940 100.000 136 0 0 1 136 1 136 1.33e-96 274
MS.gene61192.t1 MTR_8g099430 99.265 136 1 0 1 136 1 136 4.84e-96 272
MS.gene61192.t1 MTR_4g097170 99.265 136 1 0 1 136 42 177 7.71e-95 271
MS.gene61192.t1 MTR_7g059070 97.059 136 4 0 1 136 1 136 3.29e-93 265
MS.gene61192.t1 MTR_5g029820 97.059 136 4 0 1 136 1 136 3.29e-93 265
MS.gene61192.t1 MTR_5g029770 97.059 136 4 0 1 136 1 136 3.29e-93 265
MS.gene61192.t1 MTR_4g065990 97.059 136 4 0 1 136 1 136 3.29e-93 265
MS.gene61192.t1 MTR_4g088150 97.059 136 4 0 1 136 1 136 3.29e-93 265
MS.gene61192.t1 MTR_2g035230 97.059 136 4 0 1 136 1 136 3.29e-93 265
MS.gene61192.t1 MTR_8g092720 97.059 136 4 0 1 136 1 136 3.29e-93 265
MS.gene61192.t1 MTR_8g063500 97.059 136 4 0 1 136 1 136 3.29e-93 265
MS.gene61192.t1 MTR_8g103245 97.059 136 4 0 1 136 1 136 3.29e-93 265
MS.gene61192.t1 MTR_8g092820 97.059 136 4 0 1 136 1 136 3.29e-93 265
MS.gene61192.t1 MTR_7g013610 97.059 136 4 0 1 136 100 235 2.63e-92 266
MS.gene61192.t1 MTR_2g082310 92.647 136 10 0 1 136 1 136 4.16e-90 257
MS.gene61192.t1 MTR_2g082340 92.647 136 10 0 1 136 1 136 4.16e-90 257
MS.gene61192.t1 MTR_2g082370 86.301 146 10 1 1 136 1 146 3.79e-84 243
MS.gene61192.t1 MTR_2g082400 85.294 136 18 2 1 135 1 135 1.39e-76 223
MS.gene61192.t1 MTR_7g013600 83.036 112 19 0 25 136 2 113 1.72e-62 187
MS.gene61192.t1 MTR_7g023830 67.164 134 43 1 1 134 1 133 3.79e-56 172
MS.gene61192.t1 MTR_1g023630 77.477 111 23 1 1 111 1 109 1.51e-54 167
MS.gene61192.t1 MTR_7g023880 60.150 133 39 3 3 134 18 137 2.40e-44 142
MS.gene61192.t1 MTR_5g024630 63.793 116 39 2 1 116 1 113 1.54e-42 136
MS.gene61192.t1 MTR_5g024530 65.455 110 15 2 19 128 68 154 6.25e-40 131
MS.gene61192.t1 MTR_0197s0100 96.970 66 2 0 1 66 1 66 1.84e-39 129
MS.gene61192.t1 MTR_8g027840 56.122 98 42 1 37 133 28 125 4.65e-31 108
MS.gene61192.t1 MTR_8g105150 59.783 92 3 2 37 127 11 69 1.24e-26 95.1
MS.gene61192.t1 MTR_8g092740 97.368 38 1 0 99 136 118 155 5.77e-20 80.5
MS.gene61192.t1 MTR_5g089120 68.085 47 15 0 82 128 6 52 1.58e-16 70.1
MS.gene61192.t1 MTR_5g024600 62.963 54 20 0 1 54 1 54 1.14e-15 66.6
MS.gene61192.t1 MTR_4g128040 72.973 37 10 0 79 115 20 56 6.10e-14 63.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene61192.t1 AT5G10980 100.000 136 0 0 1 136 1 136 1.39e-96 274
MS.gene61192.t1 AT4G40040 100.000 136 0 0 1 136 1 136 1.39e-96 274
MS.gene61192.t1 AT4G40040 100.000 136 0 0 1 136 1 136 1.39e-96 274
MS.gene61192.t1 AT4G40040 100.000 136 0 0 1 136 1 136 1.39e-96 274
MS.gene61192.t1 AT4G40030 100.000 136 0 0 1 136 1 136 1.39e-96 274
MS.gene61192.t1 AT4G40030 100.000 136 0 0 1 136 1 136 1.39e-96 274
MS.gene61192.t1 AT4G40030 100.000 136 0 0 1 136 1 136 1.39e-96 274
MS.gene61192.t1 AT4G40030 100.000 136 0 0 1 136 29 164 2.04e-96 275
MS.gene61192.t1 AT5G65360 97.059 136 4 0 1 136 1 136 3.84e-93 265
MS.gene61192.t1 AT5G10390 97.059 136 4 0 1 136 1 136 3.84e-93 265
MS.gene61192.t1 AT5G10400 97.059 136 4 0 1 136 1 136 3.84e-93 265
MS.gene61192.t1 AT3G27360 97.059 136 4 0 1 136 1 136 3.84e-93 265
MS.gene61192.t1 AT1G09200 97.059 136 4 0 1 136 1 136 3.84e-93 265
MS.gene61192.t1 AT1G75600 96.324 136 5 0 1 136 1 136 1.02e-92 264
MS.gene61192.t1 AT1G13370 94.853 136 7 0 1 136 1 136 2.16e-91 261
MS.gene61192.t1 AT5G65350 92.647 136 10 0 1 136 1 136 1.27e-88 254
MS.gene61192.t1 AT1G19890 90.511 137 12 1 1 136 1 137 1.89e-85 246
MS.gene61192.t1 AT5G12910 71.111 135 34 2 1 135 1 130 1.15e-65 196
MS.gene61192.t1 AT1G01370 54.867 113 48 2 24 134 63 174 3.24e-32 112
MS.gene61192.t1 AT1G01370 54.867 113 48 2 24 134 63 174 3.24e-32 112
MS.gene61192.t1 AT1G01370 54.867 113 48 2 24 134 63 174 3.24e-32 112
MS.gene61192.t1 AT1G01370 54.867 113 48 2 24 134 63 174 3.24e-32 112

Find 43 sgRNAs with CRISPR-Local

Find 54 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGGTTGCAAGTTGCTTCCT+TGG 0.333909 8.4:-25205886 None:intergenic
AACCGAAGAGCAACAGTTCC+TGG 0.350308 8.4:-25206069 None:intergenic
CCTTGCCAACTGGATGTCCT+TGG 0.351370 8.4:-25206547 None:intergenic
CACGGATCCTCCTTGCCAAC+TGG 0.363910 8.4:-25206557 None:intergenic
TCAAGAGCTCAGTACTCTTC+TGG 0.372688 8.4:-25206246 None:intergenic
GAAGCTCCCCTTCCAGAGAT+TGG 0.425530 8.4:+25206273 MS.gene61192:CDS
CTTGCCAACTGGATGTCCTT+GGG 0.434839 8.4:-25206546 None:intergenic
ATATCTTGTTGGTCTCTTTG+AGG 0.438404 8.4:+25206479 MS.gene61192:CDS
TGAAATTGCTCAGGACTTCA+AGG 0.441698 8.4:+25206300 MS.gene61192:CDS
CTTCCTTGGTGCCTTTCCAC+CGG 0.443477 8.4:-25205872 None:intergenic
CAATTTCACGAACCAATCTC+TGG 0.444935 8.4:-25206285 None:intergenic
TTCTTAACTCCACCAGTAGT+TGG 0.449824 8.4:-25206030 None:intergenic
GCCCAGGAACTGTTGCTCTT+CGG 0.449916 8.4:+25206067 MS.gene61192:CDS
GCTGCTGAGGCATATCTTGT+TGG 0.457640 8.4:+25206468 MS.gene61192:CDS
TGCATTGCAAGAGGCTGCTG+AGG 0.479818 8.4:+25206455 MS.gene61192:CDS
AGAGTACTGAGCTCTTGATC+AGG 0.482557 8.4:+25206251 MS.gene61192:CDS
CGTAAGTCTGCACCAACTAC+TGG 0.494282 8.4:+25206018 MS.gene61192:CDS
ATCCGTGGTGAGCGCGCCTA+AGG 0.494321 8.4:+25206573 MS.gene61192:CDS
ATGCAAGCACAGCATGACTC+TGG 0.500306 8.4:-25206437 None:intergenic
ATTGGTTCGTGAAATTGCTC+AGG 0.513873 8.4:+25206291 MS.gene61192:CDS
TGCTGTGCTTGCATTGCAAG+AGG 0.513898 8.4:+25206446 MS.gene61192:CDS
CAAACTGCTCGTAAGTCAAC+CGG 0.517209 8.4:+25205853 MS.gene61192:CDS
TGACTTACGAGCAGTTTGCT+TGG 0.520852 8.4:-25205848 None:intergenic
TAATAGTAACTCGCTTGGCA+TGG 0.547452 8.4:-25206521 None:intergenic
CTCCTTAGGCGCGCTCACCA+CGG 0.549887 8.4:-25206575 None:intergenic
CACGAACCAATCTCTGGAAG+GGG 0.550172 8.4:-25206279 None:intergenic
ACCGAAGAGCAACAGTTCCT+GGG 0.564699 8.4:-25206068 None:intergenic
TCGTAAGTCAACCGGTGGAA+AGG 0.572235 8.4:+25205861 MS.gene61192:CDS
GGGCATAATAGTAACTCGCT+TGG 0.573260 8.4:-25206526 None:intergenic
AAGGAAGCAACTTGCAACCA+AGG 0.574800 8.4:+25205888 MS.gene61192:CDS
TCACGAACCAATCTCTGGAA+GGG 0.584671 8.4:-25206280 None:intergenic
CCAAGGACATCCAGTTGGCA+AGG 0.588868 8.4:+25206547 MS.gene61192:CDS
TTCACGAACCAATCTCTGGA+AGG 0.596494 8.4:-25206281 None:intergenic
AAACCACATCGTTATCGCCC+AGG 0.603518 8.4:+25206051 MS.gene61192:CDS
AAGTCTGCACCAACTACTGG+TGG 0.611115 8.4:+25206021 MS.gene61192:CDS
GCGAGTTACTATTATGCCCA+AGG 0.629580 8.4:+25206530 MS.gene61192:CDS
TATGCCCAAGGACATCCAGT+TGG 0.656475 8.4:+25206542 MS.gene61192:CDS
GTTCCTGGGCGATAACGATG+TGG 0.663160 8.4:-25206054 None:intergenic
CAGTTGGCAAGGAGGATCCG+TGG 0.664833 8.4:+25206558 MS.gene61192:CDS
CAGCATGACTCTGGAAACGA+AGG 0.672290 8.4:-25206428 None:intergenic
AGGACATCCAGTTGGCAAGG+AGG 0.674393 8.4:+25206550 MS.gene61192:CDS
ACTGCTCGTAAGTCAACCGG+TGG 0.674713 8.4:+25205856 MS.gene61192:CDS
CAACCGGTGGAAAGGCACCA+AGG 0.683753 8.4:+25205869 MS.gene61192:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! CTGTTAAAAAATTTCTTTTA+GGG + chr8.4:25206097-25206116 MS.gene61192:intron 15.0%
!!! TCTGTTAAAAAATTTCTTTT+AGG + chr8.4:25206096-25206115 MS.gene61192:intron 15.0%
!!! GTTTATAATGATTTGTCATT+TGG + chr8.4:25206190-25206209 MS.gene61192:intron 20.0%
!!! GTTTCTAATAATTTTGGTTT+TGG + chr8.4:25206394-25206413 MS.gene61192:intron 20.0%
!!! TATTTTAAAACAGTGAGATT+AGG + chr8.4:25206218-25206237 MS.gene61192:intron 20.0%
! AATCAACTAAAATCAAACCT+TGG - chr8.4:25205908-25205927 None:intergenic 25.0%
!! GTTGTGGTTTCTAATAATTT+TGG + chr8.4:25206388-25206407 MS.gene61192:intron 25.0%
!! TAATGATTTGTCATTTGGAT+TGG + chr8.4:25206195-25206214 MS.gene61192:intron 25.0%
!!! CTTGTTTTTCTCTTAACTTT+AGG + chr8.4:25205990-25206009 MS.gene61192:intron 25.0%
!!! TTGTTTCAATTGAGTTGAAT+TGG + chr8.4:25206163-25206182 MS.gene61192:intron 25.0%
AATCAGTTTAGTTAAGGTTG+TGG + chr8.4:25206372-25206391 MS.gene61192:intron 30.0%
GTTCACAATCAGTTTAGTTA+AGG + chr8.4:25206366-25206385 MS.gene61192:intron 30.0%
! ATATCTTGTTGGTCTCTTTG+AGG + chr8.4:25206479-25206498 MS.gene61192:CDS 35.0%
!! TCAATTGAGTTGAATTGGCT+TGG + chr8.4:25206168-25206187 MS.gene61192:intron 35.0%
CAATTTCACGAACCAATCTC+TGG - chr8.4:25206288-25206307 None:intergenic 40.0%
TAATAGTAACTCGCTTGGCA+TGG - chr8.4:25206524-25206543 None:intergenic 40.0%
TGAAATTGCTCAGGACTTCA+AGG + chr8.4:25206300-25206319 MS.gene61192:CDS 40.0%
TTCTTAACTCCACCAGTAGT+TGG - chr8.4:25206033-25206052 None:intergenic 40.0%
!! ATTGGTTCGTGAAATTGCTC+AGG + chr8.4:25206291-25206310 MS.gene61192:CDS 40.0%
AAGGAAGCAACTTGCAACCA+AGG + chr8.4:25205888-25205907 MS.gene61192:CDS 45.0%
CAAACTGCTCGTAAGTCAAC+CGG + chr8.4:25205853-25205872 MS.gene61192:CDS 45.0%
GCGAGTTACTATTATGCCCA+AGG + chr8.4:25206530-25206549 MS.gene61192:CDS 45.0%
GGGCATAATAGTAACTCGCT+TGG - chr8.4:25206529-25206548 None:intergenic 45.0%
TCAAGAGCTCAGTACTCTTC+TGG - chr8.4:25206249-25206268 None:intergenic 45.0%
TTCACGAACCAATCTCTGGA+AGG - chr8.4:25206284-25206303 None:intergenic 45.0%
TTGGTTGCAAGTTGCTTCCT+TGG - chr8.4:25205889-25205908 None:intergenic 45.0%
! TCACGAACCAATCTCTGGAA+GGG - chr8.4:25206283-25206302 None:intergenic 45.0%
! TGACTTACGAGCAGTTTGCT+TGG - chr8.4:25205851-25205870 None:intergenic 45.0%
!! AGAGTACTGAGCTCTTGATC+AGG + chr8.4:25206251-25206270 MS.gene61192:CDS 45.0%
AAACCACATCGTTATCGCCC+AGG + chr8.4:25206051-25206070 MS.gene61192:CDS 50.0%
AACCGAAGAGCAACAGTTCC+TGG - chr8.4:25206072-25206091 None:intergenic 50.0%
AAGTCTGCACCAACTACTGG+TGG + chr8.4:25206021-25206040 MS.gene61192:CDS 50.0%
ACCGAAGAGCAACAGTTCCT+GGG - chr8.4:25206071-25206090 None:intergenic 50.0%
ATGCAAGCACAGCATGACTC+TGG - chr8.4:25206440-25206459 None:intergenic 50.0%
CGTAAGTCTGCACCAACTAC+TGG + chr8.4:25206018-25206037 MS.gene61192:CDS 50.0%
CTTGCCAACTGGATGTCCTT+GGG - chr8.4:25206549-25206568 None:intergenic 50.0%
GCTGCTGAGGCATATCTTGT+TGG + chr8.4:25206468-25206487 MS.gene61192:CDS 50.0%
TATGCCCAAGGACATCCAGT+TGG + chr8.4:25206542-25206561 MS.gene61192:CDS 50.0%
TCGTAAGTCAACCGGTGGAA+AGG + chr8.4:25205861-25205880 MS.gene61192:CDS 50.0%
TGCTGTGCTTGCATTGCAAG+AGG + chr8.4:25206446-25206465 MS.gene61192:CDS 50.0%
! CACGAACCAATCTCTGGAAG+GGG - chr8.4:25206282-25206301 None:intergenic 50.0%
! CAGCATGACTCTGGAAACGA+AGG - chr8.4:25206431-25206450 None:intergenic 50.0%
ACTGCTCGTAAGTCAACCGG+TGG + chr8.4:25205856-25205875 MS.gene61192:CDS 55.0%
AGGACATCCAGTTGGCAAGG+AGG + chr8.4:25206550-25206569 MS.gene61192:CDS 55.0%
CCAAGGACATCCAGTTGGCA+AGG + chr8.4:25206547-25206566 MS.gene61192:CDS 55.0%
CCTTGCCAACTGGATGTCCT+TGG - chr8.4:25206550-25206569 None:intergenic 55.0%
GAAGCTCCCCTTCCAGAGAT+TGG + chr8.4:25206273-25206292 MS.gene61192:CDS 55.0%
GCCCAGGAACTGTTGCTCTT+CGG + chr8.4:25206067-25206086 MS.gene61192:CDS 55.0%
GTTCCTGGGCGATAACGATG+TGG - chr8.4:25206057-25206076 None:intergenic 55.0%
TGCATTGCAAGAGGCTGCTG+AGG + chr8.4:25206455-25206474 MS.gene61192:CDS 55.0%
!! CTTCCTTGGTGCCTTTCCAC+CGG - chr8.4:25205875-25205894 None:intergenic 55.0%
CACGGATCCTCCTTGCCAAC+TGG - chr8.4:25206560-25206579 None:intergenic 60.0%
CAGTTGGCAAGGAGGATCCG+TGG + chr8.4:25206558-25206577 MS.gene61192:CDS 60.0%
!! CAACCGGTGGAAAGGCACCA+AGG + chr8.4:25205869-25205888 MS.gene61192:CDS 60.0%


Chromosome Type Strat End Strand Name
chr8.4 gene 25205838 25206593 25205838 ID=MS.gene61192
chr8.4 mRNA 25205838 25206593 25205838 ID=MS.gene61192.t1;Parent=MS.gene61192
chr8.4 exon 25205838 25205909 25205838 ID=MS.gene61192.t1.exon1;Parent=MS.gene61192.t1
chr8.4 CDS 25205838 25205909 25205838 ID=cds.MS.gene61192.t1;Parent=MS.gene61192.t1
chr8.4 exon 25206012 25206088 25206012 ID=MS.gene61192.t1.exon2;Parent=MS.gene61192.t1
chr8.4 CDS 25206012 25206088 25206012 ID=cds.MS.gene61192.t1;Parent=MS.gene61192.t1
chr8.4 exon 25206231 25206321 25206231 ID=MS.gene61192.t1.exon3;Parent=MS.gene61192.t1
chr8.4 CDS 25206231 25206321 25206231 ID=cds.MS.gene61192.t1;Parent=MS.gene61192.t1
chr8.4 exon 25206423 25206593 25206423 ID=MS.gene61192.t1.exon4;Parent=MS.gene61192.t1
chr8.4 CDS 25206423 25206593 25206423 ID=cds.MS.gene61192.t1;Parent=MS.gene61192.t1
Gene Sequence

>MS.gene61192

ATGGCACGTACCAAGCAAACTGCTCGTAAGTCAACCGGTGGAAAGGCACCAAGGAAGCAACTTGCAACCAAGGTTTGATTTTAGTTGATTATCATTATAATTACATTGATTTTAATCTGTATTATGACTGTTGAATCTTATGTTAATGATTTCTTGTTTTTCTCTTAACTTTAGGCTGCACGTAAGTCTGCACCAACTACTGGTGGAGTTAAGAAACCACATCGTTATCGCCCAGGAACTGTTGCTCTTCGGTTAGTTTCTGTTAAAAAATTTCTTTTAGGGTTGTAGTTCAATGTGTCGTGTTCTGTTCTGTTTTGATTTTAATTTGTTTCAATTGAGTTGAATTGGCTTGGTTTATAATGATTTGTCATTTGGATTGGTATTTTAAAACAGTGAGATTAGGAAGTACCAGAAGAGTACTGAGCTCTTGATCAGGAAGCTCCCCTTCCAGAGATTGGTTCGTGAAATTGCTCAGGACTTCAAGGTAATGTGTAGTGTAGTTAATGATGTGAGATATTGTGTATTTGTGTTCACAATCAGTTTAGTTAAGGTTGTGGTTTCTAATAATTTTGGTTTTGGTTGCAGACTGACCTTCGTTTCCAGAGTCATGCTGTGCTTGCATTGCAAGAGGCTGCTGAGGCATATCTTGTTGGTCTCTTTGAGGACACTAACTTGTGTGCTATCCATGCCAAGCGAGTTACTATTATGCCCAAGGACATCCAGTTGGCAAGGAGGATCCGTGGTGAGCGCGCCTAA

Protein sequence

>MS.gene61192.t1

MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA