Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene76268.t1 | XP_013470225.1 | 92.6 | 686 | 48 | 1 | 1 | 683 | 1 | 686 | 0.00E+00 | 1164.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene76268.t1 | P51281 | 43.7 | 574 | 291 | 4 | 82 | 638 | 6 | 564 | 2.7e-118 | 427.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene76268.t1 | A0A072VS51 | 92.6 | 686 | 48 | 1 | 1 | 683 | 1 | 686 | 0.0e+00 | 1164.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049171 | MS.gene76268 | 0.804389 | 2.21E-49 | -1.69E-46 |
| MS.gene049222 | MS.gene76268 | 0.823632 | 1.25E-53 | -1.69E-46 |
| MS.gene049232 | MS.gene76268 | 0.805857 | 1.09E-49 | -1.69E-46 |
| MS.gene049356 | MS.gene76268 | 0.802023 | 6.83E-49 | -1.69E-46 |
| MS.gene049369 | MS.gene76268 | 0.807578 | 4.72E-50 | -1.69E-46 |
| MS.gene049396 | MS.gene76268 | 0.820594 | 6.32E-53 | -1.69E-46 |
| MS.gene049609 | MS.gene76268 | 0.85067 | 1.46E-60 | -1.69E-46 |
| MS.gene049633 | MS.gene76268 | 0.821647 | 3.61E-53 | -1.69E-46 |
| MS.gene050170 | MS.gene76268 | 0.839667 | 1.38E-57 | -1.69E-46 |
| MS.gene050323 | MS.gene76268 | 0.802086 | 6.63E-49 | -1.69E-46 |
| MS.gene050496 | MS.gene76268 | 0.819436 | 1.16E-52 | -1.69E-46 |
| MS.gene050502 | MS.gene76268 | 0.836304 | 1.01E-56 | -1.69E-46 |
| MS.gene050520 | MS.gene76268 | 0.814741 | 1.32E-51 | -1.69E-46 |
| MS.gene050553 | MS.gene76268 | 0.809681 | 1.68E-50 | -1.69E-46 |
| MS.gene050593 | MS.gene76268 | 0.851029 | 1.16E-60 | -1.69E-46 |
| MS.gene050670 | MS.gene76268 | 0.820597 | 6.31E-53 | -1.69E-46 |
| MS.gene050675 | MS.gene76268 | 0.80083 | 1.20E-48 | -1.69E-46 |
| MS.gene050747 | MS.gene76268 | 0.861874 | 7.55E-64 | -1.69E-46 |
| MS.gene050772 | MS.gene76268 | 0.8519 | 6.57E-61 | -1.69E-46 |
| MS.gene05080 | MS.gene76268 | 0.827947 | 1.18E-54 | -1.69E-46 |
| MS.gene050868 | MS.gene76268 | 0.823228 | 1.55E-53 | -1.69E-46 |
| MS.gene050871 | MS.gene76268 | 0.820483 | 6.70E-53 | -1.69E-46 |
| MS.gene050904 | MS.gene76268 | 0.809021 | 2.32E-50 | -1.69E-46 |
| MS.gene050950 | MS.gene76268 | 0.857544 | 1.52E-62 | -1.69E-46 |
| MS.gene05105 | MS.gene76268 | 0.809461 | 1.87E-50 | -1.69E-46 |
| MS.gene051360 | MS.gene76268 | 0.80013 | 1.66E-48 | -1.69E-46 |
| MS.gene051387 | MS.gene76268 | 0.852773 | 3.70E-61 | -1.69E-46 |
| MS.gene051438 | MS.gene76268 | 0.850453 | 1.68E-60 | -1.69E-46 |
| MS.gene051521 | MS.gene76268 | 0.808331 | 3.26E-50 | -1.69E-46 |
| MS.gene051525 | MS.gene76268 | 0.824536 | 7.66E-54 | -1.69E-46 |
| MS.gene051838 | MS.gene76268 | 0.845933 | 2.98E-59 | -1.69E-46 |
| MS.gene051874 | MS.gene76268 | 0.816886 | 4.39E-52 | -1.69E-46 |
| MS.gene051941 | MS.gene76268 | 0.85712 | 2.03E-62 | -1.69E-46 |
| MS.gene052346 | MS.gene76268 | 0.868057 | 8.66E-66 | -1.69E-46 |
| MS.gene052414 | MS.gene76268 | 0.81487 | 1.24E-51 | -1.69E-46 |
| MS.gene052421 | MS.gene76268 | 0.81267 | 3.77E-51 | -1.69E-46 |
| MS.gene052503 | MS.gene76268 | 0.816606 | 5.07E-52 | -1.69E-46 |
| MS.gene052506 | MS.gene76268 | 0.808593 | 2.87E-50 | -1.69E-46 |
| MS.gene052822 | MS.gene76268 | 0.809792 | 1.59E-50 | -1.69E-46 |
| MS.gene052823 | MS.gene76268 | 0.811584 | 6.51E-51 | -1.69E-46 |
| MS.gene052825 | MS.gene76268 | 0.80929 | 2.04E-50 | -1.69E-46 |
| MS.gene052966 | MS.gene76268 | 0.856674 | 2.74E-62 | -1.69E-46 |
| MS.gene052982 | MS.gene76268 | 0.811613 | 6.41E-51 | -1.69E-46 |
| MS.gene052999 | MS.gene76268 | 0.822908 | 1.84E-53 | -1.69E-46 |
| MS.gene053169 | MS.gene76268 | 0.855353 | 6.68E-62 | -1.69E-46 |
| MS.gene053203 | MS.gene76268 | 0.842006 | 3.36E-58 | -1.69E-46 |
| MS.gene053207 | MS.gene76268 | 0.823292 | 1.50E-53 | -1.69E-46 |
| MS.gene053213 | MS.gene76268 | 0.80396 | 2.72E-49 | -1.69E-46 |
| MS.gene053286 | MS.gene76268 | 0.801468 | 8.88E-49 | -1.69E-46 |
| MS.gene053318 | MS.gene76268 | 0.839218 | 1.81E-57 | -1.69E-46 |
| MS.gene053436 | MS.gene76268 | 0.837894 | 3.97E-57 | -1.69E-46 |
| MS.gene053449 | MS.gene76268 | 0.822418 | 2.39E-53 | -1.69E-46 |
| MS.gene053479 | MS.gene76268 | 0.844591 | 6.88E-59 | -1.69E-46 |
| MS.gene053574 | MS.gene76268 | 0.864117 | 1.53E-64 | -1.69E-46 |
| MS.gene053626 | MS.gene76268 | 0.834952 | 2.23E-56 | -1.69E-46 |
| MS.gene053824 | MS.gene76268 | 0.856665 | 2.76E-62 | -1.69E-46 |
| MS.gene053912 | MS.gene76268 | 0.823515 | 1.33E-53 | -1.69E-46 |
| MS.gene054408 | MS.gene76268 | 0.812938 | 3.30E-51 | -1.69E-46 |
| MS.gene054595 | MS.gene76268 | 0.815561 | 8.68E-52 | -1.69E-46 |
| MS.gene054600 | MS.gene76268 | 0.81622 | 6.19E-52 | -1.69E-46 |
| MS.gene054927 | MS.gene76268 | 0.831873 | 1.30E-55 | -1.69E-46 |
| MS.gene05494 | MS.gene76268 | 0.841625 | 4.24E-58 | -1.69E-46 |
| MS.gene05505 | MS.gene76268 | 0.817811 | 2.72E-52 | -1.69E-46 |
| MS.gene055224 | MS.gene76268 | 0.836335 | 9.94E-57 | -1.69E-46 |
| MS.gene055539 | MS.gene76268 | 0.826414 | 2.75E-54 | -1.69E-46 |
| MS.gene055577 | MS.gene76268 | 0.81599 | 6.96E-52 | -1.69E-46 |
| MS.gene055722 | MS.gene76268 | 0.833912 | 4.06E-56 | -1.69E-46 |
| MS.gene055741 | MS.gene76268 | 0.87 | 2.03E-66 | -1.69E-46 |
| MS.gene055744 | MS.gene76268 | 0.862311 | 5.54E-64 | -1.69E-46 |
| MS.gene055750 | MS.gene76268 | 0.802046 | 6.76E-49 | -1.69E-46 |
| MS.gene055909 | MS.gene76268 | 0.864675 | 1.03E-64 | -1.69E-46 |
| MS.gene055911 | MS.gene76268 | 0.860521 | 1.95E-63 | -1.69E-46 |
| MS.gene055941 | MS.gene76268 | 0.81263 | 3.85E-51 | -1.69E-46 |
| MS.gene05601 | MS.gene76268 | 0.819765 | 9.78E-53 | -1.69E-46 |
| MS.gene056040 | MS.gene76268 | 0.825216 | 5.29E-54 | -1.69E-46 |
| MS.gene056166 | MS.gene76268 | 0.842359 | 2.71E-58 | -1.69E-46 |
| MS.gene056422 | MS.gene76268 | 0.800736 | 1.25E-48 | -1.69E-46 |
| MS.gene056504 | MS.gene76268 | 0.804796 | 1.82E-49 | -1.69E-46 |
| MS.gene056510 | MS.gene76268 | 0.826291 | 2.94E-54 | -1.69E-46 |
| MS.gene056511 | MS.gene76268 | 0.818815 | 1.61E-52 | -1.69E-46 |
| MS.gene05664 | MS.gene76268 | 0.806111 | 9.64E-50 | -1.69E-46 |
| MS.gene05666 | MS.gene76268 | 0.823542 | 1.31E-53 | -1.69E-46 |
| MS.gene056877 | MS.gene76268 | 0.811319 | 7.43E-51 | -1.69E-46 |
| MS.gene056878 | MS.gene76268 | 0.81734 | 3.47E-52 | -1.69E-46 |
| MS.gene057019 | MS.gene76268 | 0.863396 | 2.56E-64 | -1.69E-46 |
| MS.gene057076 | MS.gene76268 | 0.833476 | 5.22E-56 | -1.69E-46 |
| MS.gene057331 | MS.gene76268 | 0.841024 | 6.11E-58 | -1.69E-46 |
| MS.gene057416 | MS.gene76268 | 0.821721 | 3.47E-53 | -1.69E-46 |
| MS.gene057734 | MS.gene76268 | 0.872846 | 2.32E-67 | -1.69E-46 |
| MS.gene057856 | MS.gene76268 | 0.803296 | 3.73E-49 | -1.69E-46 |
| MS.gene05787 | MS.gene76268 | 0.835441 | 1.68E-56 | -1.69E-46 |
| MS.gene058007 | MS.gene76268 | 0.80984 | 1.55E-50 | -1.69E-46 |
| MS.gene058120 | MS.gene76268 | 0.866493 | 2.74E-65 | -1.69E-46 |
| MS.gene058130 | MS.gene76268 | 0.806149 | 9.47E-50 | -1.69E-46 |
| MS.gene05837 | MS.gene76268 | 0.857745 | 1.32E-62 | -1.69E-46 |
| MS.gene058444 | MS.gene76268 | 0.812838 | 3.47E-51 | -1.69E-46 |
| MS.gene058700 | MS.gene76268 | 0.902507 | 9.04E-79 | -1.69E-46 |
| MS.gene058773 | MS.gene76268 | 0.808322 | 3.28E-50 | -1.69E-46 |
| MS.gene058838 | MS.gene76268 | 0.815555 | 8.71E-52 | -1.69E-46 |
| MS.gene058948 | MS.gene76268 | 0.846582 | 1.98E-59 | -1.69E-46 |
| MS.gene059023 | MS.gene76268 | 0.833661 | 4.69E-56 | -1.69E-46 |
| MS.gene059305 | MS.gene76268 | 0.809441 | 1.89E-50 | -1.69E-46 |
| MS.gene059517 | MS.gene76268 | 0.803828 | 2.89E-49 | -1.69E-46 |
| MS.gene059667 | MS.gene76268 | 0.820279 | 7.46E-53 | -1.69E-46 |
| MS.gene059674 | MS.gene76268 | 0.803581 | 3.26E-49 | -1.69E-46 |
| MS.gene059680 | MS.gene76268 | 0.818905 | 1.54E-52 | -1.69E-46 |
| MS.gene059711 | MS.gene76268 | 0.808807 | 2.58E-50 | -1.69E-46 |
| MS.gene059718 | MS.gene76268 | 0.820063 | 8.36E-53 | -1.69E-46 |
| MS.gene059801 | MS.gene76268 | 0.800807 | 1.21E-48 | -1.69E-46 |
| MS.gene06000 | MS.gene76268 | 0.83671 | 7.98E-57 | -1.69E-46 |
| MS.gene060372 | MS.gene76268 | 0.889196 | 3.01E-73 | -1.69E-46 |
| MS.gene060778 | MS.gene76268 | 0.808505 | 3.00E-50 | -1.69E-46 |
| MS.gene060835 | MS.gene76268 | 0.831248 | 1.86E-55 | -1.69E-46 |
| MS.gene060837 | MS.gene76268 | 0.866562 | 2.60E-65 | -1.69E-46 |
| MS.gene06092 | MS.gene76268 | 0.805848 | 1.09E-49 | -1.69E-46 |
| MS.gene06097 | MS.gene76268 | 0.849682 | 2.76E-60 | -1.69E-46 |
| MS.gene060982 | MS.gene76268 | 0.807484 | 4.94E-50 | -1.69E-46 |
| MS.gene061154 | MS.gene76268 | 0.814973 | 1.17E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene76268.t1 | MTR_1g111400 | 97.230 | 686 | 16 | 1 | 1 | 683 | 1 | 686 | 0.0 | 1362 |
| MS.gene76268.t1 | MTR_1g111400 | 97.252 | 473 | 10 | 1 | 1 | 470 | 1 | 473 | 0.0 | 952 |
| MS.gene76268.t1 | MTR_8g463650 | 48.527 | 645 | 293 | 10 | 52 | 683 | 36 | 654 | 0.0 | 558 |
| MS.gene76268.t1 | MTR_8g463650 | 51.731 | 520 | 233 | 6 | 52 | 561 | 36 | 547 | 1.38e-175 | 512 |
| MS.gene76268.t1 | MTR_8g463650 | 66.570 | 344 | 114 | 1 | 52 | 394 | 36 | 379 | 1.96e-158 | 464 |
| MS.gene76268.t1 | MTR_8g463650 | 66.570 | 344 | 114 | 1 | 52 | 394 | 36 | 379 | 3.46e-158 | 464 |
| MS.gene76268.t1 | MTR_1g076810 | 53.666 | 341 | 155 | 2 | 60 | 398 | 307 | 646 | 2.44e-113 | 355 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene76268.t1 | AT3G10420 | 64.957 | 702 | 205 | 12 | 1 | 681 | 1 | 682 | 0.0 | 819 |
| MS.gene76268.t1 | AT3G10420 | 65.027 | 549 | 162 | 9 | 1 | 528 | 1 | 540 | 0.0 | 658 |
| MS.gene76268.t1 | AT1G73170 | 48.287 | 613 | 280 | 8 | 82 | 683 | 80 | 666 | 0.0 | 538 |
| MS.gene76268.t1 | AT1G73170 | 50.890 | 562 | 247 | 6 | 82 | 638 | 80 | 617 | 0.0 | 536 |
| MS.gene76268.t1 | AT1G73170 | 47.359 | 549 | 252 | 8 | 146 | 683 | 16 | 538 | 4.84e-159 | 469 |
| MS.gene76268.t1 | AT1G33290 | 53.714 | 350 | 148 | 6 | 57 | 398 | 19 | 362 | 2.49e-119 | 362 |
| MS.gene76268.t1 | AT1G33290 | 58.276 | 290 | 116 | 3 | 112 | 398 | 1 | 288 | 5.43e-113 | 342 |
| MS.gene76268.t1 | AT1G73170 | 39.952 | 418 | 214 | 8 | 277 | 683 | 1 | 392 | 1.60e-81 | 264 |
| MS.gene76268.t1 | AT1G33290 | 49.099 | 222 | 88 | 6 | 57 | 258 | 19 | 235 | 2.33e-55 | 191 |
| MS.gene76268.t1 | AT1G33290 | 51.389 | 72 | 34 | 1 | 327 | 398 | 216 | 286 | 7.12e-15 | 76.6 |
Find 175 sgRNAs with CRISPR-Local
Find 352 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACCATTATAATTGATGAAAT+TGG | 0.186337 | 1.1:+78644055 | MS.gene76268:CDS |
| ATCAAGCTCTGCTGTGGTTT+CGG | 0.189914 | 1.1:-78642062 | None:intergenic |
| ATTGAAGTTGTTATGGATTT+AGG | 0.190737 | 1.1:+78642154 | MS.gene76268:CDS |
| TCAAGCTCTGCTGTGGTTTC+GGG | 0.191696 | 1.1:-78642061 | None:intergenic |
| GTTTCTTCATGGCTTATTTC+AGG | 0.202929 | 1.1:-78644756 | None:intergenic |
| TTCAACTGTGGATGCTATTT+TGG | 0.203491 | 1.1:+78644548 | MS.gene76268:CDS |
| TCATCAATTATAATGGTTTC+AGG | 0.225693 | 1.1:-78644049 | None:intergenic |
| TCATCGTCAATTTCAATATC+TGG | 0.234846 | 1.1:-78645460 | None:intergenic |
| TTGAATCATTCAGGTAAAAT+AGG | 0.252962 | 1.1:-78646600 | None:intergenic |
| CTAGATTCCCTTCTGGTGAT+TGG | 0.254727 | 1.1:+78642191 | MS.gene76268:CDS |
| TCCAATTTCATCAATTATAA+TGG | 0.266424 | 1.1:-78644056 | None:intergenic |
| TTAAAACGTTGACCTGATTA+AGG | 0.276926 | 1.1:-78642966 | None:intergenic |
| AGCAGAGCTTGATATGTTTC+TGG | 0.277644 | 1.1:+78642072 | MS.gene76268:CDS |
| AGAAGCTGAAGAAGATGATT+TGG | 0.281013 | 1.1:-78641972 | None:intergenic |
| GTGGATACATCCAATGAAAT+TGG | 0.294748 | 1.1:+78643797 | MS.gene76268:CDS |
| ACTAGACTTGGAGGGTCTTT+TGG | 0.295771 | 1.1:-78646493 | None:intergenic |
| TCATGGCTTATTTCAGGTAT+TGG | 0.299020 | 1.1:-78644750 | None:intergenic |
| AAAACAATTTATTGTTGTTA+AGG | 0.301161 | 1.1:-78641901 | None:intergenic |
| ACTATTATCACTCCATTTCA+TGG | 0.305396 | 1.1:-78644865 | None:intergenic |
| TTAAATCCGATGTTTCTTCA+TGG | 0.331868 | 1.1:-78644767 | None:intergenic |
| CCTTATCTTCAGATCCTTGT+TGG | 0.338669 | 1.1:+78644178 | MS.gene76268:CDS |
| TCCAGCGATGGTTTGCGCTT+TGG | 0.341411 | 1.1:-78645487 | None:intergenic |
| TTTACGCCACGCCATTTCTA+AGG | 0.343073 | 1.1:+78642246 | MS.gene76268:CDS |
| CCACTATTACTACGCGCTTC+AGG | 0.363898 | 1.1:-78643778 | None:intergenic |
| CTATGCTGCATATTCACATT+TGG | 0.364142 | 1.1:-78643875 | None:intergenic |
| ATGAACACGACATTCAGTTT+TGG | 0.374118 | 1.1:-78644514 | None:intergenic |
| TGGACTCATTGAAGTTGTTA+TGG | 0.376901 | 1.1:+78642147 | MS.gene76268:CDS |
| TAGATTCCCTTCTGGTGATT+GGG | 0.380201 | 1.1:+78642192 | MS.gene76268:CDS |
| ATATCTGGAGACTCATTTGA+TGG | 0.383132 | 1.1:-78645445 | None:intergenic |
| TCCGTCACCTCCAATTTCAT+TGG | 0.385683 | 1.1:-78643807 | None:intergenic |
| CTGAATGTCGTGTTCATCAT+AGG | 0.387994 | 1.1:+78644520 | MS.gene76268:CDS |
| CGTAAATCATCATGGTTAAT+AGG | 0.388583 | 1.1:-78642229 | None:intergenic |
| CCTCTTGCTAGATTCCCTTC+TGG | 0.390859 | 1.1:+78642184 | MS.gene76268:CDS |
| CTGAGTTACGACAGAATTCA+TGG | 0.392309 | 1.1:+78645207 | MS.gene76268:CDS |
| TGCTAAAATCATACATGATC+TGG | 0.404375 | 1.1:+78642889 | MS.gene76268:CDS |
| CTCGACCAACACGGCAAGTA+AGG | 0.408770 | 1.1:-78642853 | None:intergenic |
| CAGTATTTGAAGTCCGTCAT+TGG | 0.410784 | 1.1:+78644694 | MS.gene76268:CDS |
| ATTCTTCATTATGCTTTCAA+TGG | 0.418087 | 1.1:-78644155 | None:intergenic |
| AGCATGCTTCACCAAATCAT+TGG | 0.420342 | 1.1:-78644727 | None:intergenic |
| TTGGTAAAACTACCTTAATC+AGG | 0.424584 | 1.1:+78642954 | MS.gene76268:CDS |
| TTTCTATACGGCAGGAGGTT+CGG | 0.427009 | 1.1:+78646298 | MS.gene76268:intron |
| TTCCTCATGCAGGCATAGGC+AGG | 0.427872 | 1.1:+78643834 | MS.gene76268:CDS |
| TGCTCAAAGAGGAGTTCAAT+TGG | 0.429380 | 1.1:+78644111 | MS.gene76268:CDS |
| TGAGGAAGGAGGTTCTATAT+TGG | 0.434005 | 1.1:+78642913 | MS.gene76268:CDS |
| GGAGGTTCTATATTGGTCAT+TGG | 0.436397 | 1.1:+78642920 | MS.gene76268:CDS |
| GTTTCTGGAACTTCTTCCAT+TGG | 0.437811 | 1.1:+78642087 | MS.gene76268:CDS |
| ATCCCACTCGATCCATGAAA+TGG | 0.438370 | 1.1:+78644853 | MS.gene76268:CDS |
| TCAGAGGGTCTTCGGATTTG+AGG | 0.438891 | 1.1:-78641995 | None:intergenic |
| GATCGTTACCCAATCAGAAA+TGG | 0.439746 | 1.1:+78642016 | MS.gene76268:CDS |
| GGTAACGATCAGAGGGTCTT+CGG | 0.440923 | 1.1:-78642003 | None:intergenic |
| ATATTGGTCATTGGACCTCC+TGG | 0.442400 | 1.1:+78642929 | MS.gene76268:CDS |
| GTGAGGATCCATTTCTGATT+GGG | 0.444033 | 1.1:-78642024 | None:intergenic |
| CAATGACGGACTTCAAATAC+TGG | 0.449272 | 1.1:-78644693 | None:intergenic |
| TGAGAACAAATACAGGTAAC+TGG | 0.450824 | 1.1:-78645253 | None:intergenic |
| GGTGAGGATCCATTTCTGAT+TGG | 0.451123 | 1.1:-78642025 | None:intergenic |
| AGAGTAGAGTACCTTAGAAA+TGG | 0.453739 | 1.1:-78642257 | None:intergenic |
| GATCCTTGTTGGTGGTATAG+AGG | 0.456580 | 1.1:+78644189 | MS.gene76268:CDS |
| ATCCTTGGGCTAGAACCCTT+TGG | 0.459148 | 1.1:+78645406 | MS.gene76268:CDS |
| AGTATTTGAAGTCCGTCATT+GGG | 0.460558 | 1.1:+78644695 | MS.gene76268:CDS |
| TTGAATAGAGTGTAACTCTC+GGG | 0.466591 | 1.1:+78644403 | MS.gene76268:intron |
| GCTGATGCAATTCTTGCATC+CGG | 0.468276 | 1.1:+78645182 | MS.gene76268:CDS |
| AACCGTCAGATGCAAATCAT+TGG | 0.469178 | 1.1:+78642830 | MS.gene76268:CDS |
| CAATGAGTCCACCAATCTCT+TGG | 0.470658 | 1.1:-78642135 | None:intergenic |
| ATAGAGTACATAGTGATTCC+TGG | 0.476995 | 1.1:+78646327 | MS.gene76268:CDS |
| CCTGAAGCGCGTAGTAATAG+TGG | 0.478310 | 1.1:+78643778 | MS.gene76268:CDS |
| TTCTTTATCGTGGAGCCAAA+GGG | 0.483101 | 1.1:-78645421 | None:intergenic |
| GCAATGGTACCACTGTCAAT+AGG | 0.485311 | 1.1:+78646574 | MS.gene76268:CDS |
| TCAATAATTTCAGAACGTCT+TGG | 0.487672 | 1.1:-78646372 | None:intergenic |
| CAAAGAGGAGTTCAATTGGT+TGG | 0.488544 | 1.1:+78644115 | MS.gene76268:CDS |
| CCAACAAGGATCTGAAGATA+AGG | 0.493089 | 1.1:-78644178 | None:intergenic |
| GTACAAGTAGCAAAAGTGAT+GGG | 0.494154 | 1.1:+78645119 | MS.gene76268:CDS |
| ATTGGCCTTACTTGCCGTGT+TGG | 0.495552 | 1.1:+78642848 | MS.gene76268:CDS |
| CAATTGGTTGGAACAGCACA+TGG | 0.496072 | 1.1:+78644127 | MS.gene76268:CDS |
| GCTGGAAGAGATTGACGCCT+TGG | 0.496312 | 1.1:+78645504 | MS.gene76268:CDS |
| TATCTTCAGATCCTTGTTGG+TGG | 0.497033 | 1.1:+78644181 | MS.gene76268:CDS |
| ACCAAAGCGCAAACCATCGC+TGG | 0.503492 | 1.1:+78645486 | MS.gene76268:CDS |
| GAGTGTAACTCTCGGGGATG+AGG | 0.503582 | 1.1:+78644410 | MS.gene76268:intron |
| CTCTCGGGGATGAGGAAGCC+AGG | 0.505259 | 1.1:+78644418 | MS.gene76268:CDS |
| CAGAGAGACTGCTAGGATGC+TGG | 0.505835 | 1.1:+78643745 | MS.gene76268:intron |
| GTTACCTGTATTTGTTCTCA+AGG | 0.506262 | 1.1:+78645256 | MS.gene76268:CDS |
| TGCAAAAGACAATTCTAGAA+AGG | 0.510028 | 1.1:+78644451 | MS.gene76268:CDS |
| CTTCTTTATCGTGGAGCCAA+AGG | 0.510592 | 1.1:-78645422 | None:intergenic |
| GCTTGTAGTGGTGGCGGCAA+TGG | 0.511537 | 1.1:+78646558 | MS.gene76268:CDS |
| ATGAAATGGAGTGATAATAG+TGG | 0.514888 | 1.1:+78644867 | MS.gene76268:CDS |
| GTCATTGGACCTCCTGGTGT+TGG | 0.524184 | 1.1:+78642935 | MS.gene76268:CDS |
| TTGTATCGCCACCAAGAGAT+TGG | 0.524330 | 1.1:+78642124 | MS.gene76268:CDS |
| TGCATCGTATAAGTGCAATT+CGG | 0.526874 | 1.1:+78642807 | MS.gene76268:CDS |
| GGGTTGTGAATTCGAGGGTG+AGG | 0.527286 | 1.1:-78642041 | None:intergenic |
| AACTTCTTCCATTGGAGATG+AGG | 0.532842 | 1.1:+78642095 | MS.gene76268:CDS |
| GGAAGAGATTGACGCCTTGG+AGG | 0.536207 | 1.1:+78645507 | MS.gene76268:CDS |
| GGGATGAGGAAGCCAGGAAA+AGG | 0.537182 | 1.1:+78644424 | MS.gene76268:CDS |
| CAAGGGAAGAATCTGCAACC+TGG | 0.537532 | 1.1:-78646460 | None:intergenic |
| ATTCTGTCGTAACTCAGAAC+CGG | 0.538742 | 1.1:-78645201 | None:intergenic |
| TCCAATGAAATTGGAGGTGA+CGG | 0.539462 | 1.1:+78643806 | MS.gene76268:CDS |
| ATTTGATGGCTTCTTTATCG+TGG | 0.539478 | 1.1:-78645431 | None:intergenic |
| GGCACCTTGAGAACAAATAC+AGG | 0.540365 | 1.1:-78645260 | None:intergenic |
| GATTCCTGGTGGAGAGGCTG+TGG | 0.540843 | 1.1:+78646341 | MS.gene76268:CDS |
| GGAAACAGAACTAGACTTGG+AGG | 0.541505 | 1.1:-78646502 | None:intergenic |
| GGCCAATGATTTGCATCTGA+CGG | 0.543218 | 1.1:-78642832 | None:intergenic |
| GCGTCAATCTCTTCCAGCGA+TGG | 0.543519 | 1.1:-78645499 | None:intergenic |
| ATGCAGGCATAGGCAGGGCG+AGG | 0.546724 | 1.1:+78643840 | MS.gene76268:CDS |
| TTTGCACAAGTTCAATCTGC+CGG | 0.546806 | 1.1:-78646395 | None:intergenic |
| TTGATCTTCACTGCACCTCA+TGG | 0.546851 | 1.1:+78641864 | MS.gene76268:CDS |
| TCTTCCATTGGAGATGAGGA+TGG | 0.549063 | 1.1:+78642099 | MS.gene76268:CDS |
| GACGGAGATGTTCCTCATGC+AGG | 0.549892 | 1.1:+78643824 | MS.gene76268:CDS |
| AATCATACATGATCTGGTTG+AGG | 0.551401 | 1.1:+78642895 | MS.gene76268:CDS |
| GATGTTCCTCATGCAGGCAT+AGG | 0.555685 | 1.1:+78643830 | MS.gene76268:CDS |
| GACGTTCTGAAATTATTGAC+CGG | 0.556854 | 1.1:+78646376 | MS.gene76268:CDS |
| CAGTTGGCTGCTGAAAAGTC+AGG | 0.557070 | 1.1:+78646423 | MS.gene76268:CDS |
| AGTTCCACAGCCTCTCCACC+AGG | 0.563344 | 1.1:-78646345 | None:intergenic |
| TTTGAATAGAGTGTAACTCT+CGG | 0.564422 | 1.1:+78644402 | MS.gene76268:intron |
| GGCTGCTGAAAAGTCAGGTA+CGG | 0.565693 | 1.1:+78646428 | MS.gene76268:CDS |
| AAGTCTGCTTGTAGTGGTGG+CGG | 0.567092 | 1.1:+78646552 | MS.gene76268:CDS |
| TTGAACTCCTCTTTGAGCAA+TGG | 0.567809 | 1.1:-78644107 | None:intergenic |
| AATTCCATCCTCATCTCCAA+TGG | 0.572936 | 1.1:-78642103 | None:intergenic |
| CAAGTCTTCTTGATGAACGA+TGG | 0.574288 | 1.1:-78641931 | None:intergenic |
| CAGGCATAGGCAGGGCGAGG+AGG | 0.576115 | 1.1:+78643843 | MS.gene76268:CDS |
| ATAGAAGTAACTGATGACAT+TGG | 0.579181 | 1.1:+78645155 | MS.gene76268:CDS |
| AGTACAAGTAGCAAAAGTGA+TGG | 0.579277 | 1.1:+78645118 | MS.gene76268:CDS |
| TACTTGCCGTGTTGGTCGAG+CGG | 0.579698 | 1.1:+78642856 | MS.gene76268:CDS |
| GAAAAGTCTGCTTGTAGTGG+TGG | 0.579730 | 1.1:+78646549 | MS.gene76268:CDS |
| TCTGATTGGGTAACGATCAG+AGG | 0.580957 | 1.1:-78642011 | None:intergenic |
| CATAGTGATTCCTGGTGGAG+AGG | 0.582191 | 1.1:+78646335 | MS.gene76268:CDS |
| TGAGTCCACCAATCTCTTGG+TGG | 0.584820 | 1.1:-78642132 | None:intergenic |
| GGTTTCGGGTTGTGAATTCG+AGG | 0.586494 | 1.1:-78642047 | None:intergenic |
| TCAACAGCACACGTAAATGT+AGG | 0.586604 | 1.1:-78644483 | None:intergenic |
| GCGGGAAACAGAACTAGACT+TGG | 0.590235 | 1.1:-78646505 | None:intergenic |
| GATTGTGCAGAGAGACTGCT+AGG | 0.591378 | 1.1:+78643738 | MS.gene76268:intron |
| TTCACTGCACCTCATGGCAA+AGG | 0.591521 | 1.1:+78641870 | MS.gene76268:CDS |
| AGCCAAAGGGTTCTAGCCCA+AGG | 0.592565 | 1.1:-78645408 | None:intergenic |
| GATACATCCAATGAAATTGG+AGG | 0.595729 | 1.1:+78643800 | MS.gene76268:CDS |
| GCAAGTACCATTGCTCAAAG+AGG | 0.597613 | 1.1:+78644100 | MS.gene76268:CDS |
| GGTTGCAGATTCTTCCCTTG+AGG | 0.597711 | 1.1:+78646463 | MS.gene76268:CDS |
| TATCGCCACCAAGAGATTGG+TGG | 0.601041 | 1.1:+78642127 | MS.gene76268:CDS |
| ATACATGATCTGGTTGAGGA+AGG | 0.605235 | 1.1:+78642899 | MS.gene76268:CDS |
| ACTCCATTTCATGGATCGAG+TGG | 0.607616 | 1.1:-78644856 | None:intergenic |
| CAGGTACGGATCAAAACACC+AGG | 0.608144 | 1.1:+78646442 | MS.gene76268:CDS |
| TCAGAAAAGTCTGCTTGTAG+TGG | 0.608397 | 1.1:+78646546 | MS.gene76268:CDS |
| CTGATTGGGTAACGATCAGA+GGG | 0.608679 | 1.1:-78642010 | None:intergenic |
| AGAAAAGGGTTGTACCTCCA+AGG | 0.608824 | 1.1:-78645521 | None:intergenic |
| CATGATCTGGTTGAGGAAGG+AGG | 0.608961 | 1.1:+78642902 | MS.gene76268:CDS |
| TTGCAGGTGTACACTTGCAT+TGG | 0.612087 | 1.1:-78644912 | None:intergenic |
| AAGACAATTCTAGAAAGGAA+AGG | 0.613874 | 1.1:+78644456 | MS.gene76268:CDS |
| ATAGTGGATCTGTGATCAAG+AGG | 0.617190 | 1.1:+78644883 | MS.gene76268:CDS |
| TCCTCATGCAGGCATAGGCA+GGG | 0.617902 | 1.1:+78643835 | MS.gene76268:CDS |
| TTCATTGCAGTCCAATACCA+TGG | 0.618171 | 1.1:+78645357 | MS.gene76268:intron |
| TGGCGTGGCGTAAATCATCA+TGG | 0.622075 | 1.1:-78642237 | None:intergenic |
| AAACATATCAAGCTCTGCTG+TGG | 0.623191 | 1.1:-78642068 | None:intergenic |
| ACTTGTGCAAAGCTATCAGT+TGG | 0.624557 | 1.1:+78646407 | MS.gene76268:CDS |
| GAAATGACCCAATCACCAGA+AGG | 0.627070 | 1.1:-78642199 | None:intergenic |
| GTTTCGGGTTGTGAATTCGA+GGG | 0.628239 | 1.1:-78642046 | None:intergenic |
| CGTGTTGGTCGAGCGGTGAG+TGG | 0.630353 | 1.1:+78642863 | MS.gene76268:CDS |
| CTCCATTTCATGGATCGAGT+GGG | 0.632603 | 1.1:-78644855 | None:intergenic |
| AATAAGCCATGAAGAAACAT+CGG | 0.634610 | 1.1:+78644761 | MS.gene76268:CDS |
| CGACAGAATTCATGGATCCG+TGG | 0.635339 | 1.1:+78645215 | MS.gene76268:CDS |
| GCCCTGCCTATGCCTGCATG+AGG | 0.636859 | 1.1:-78643836 | None:intergenic |
| GTTGTTGTTCCTTTGCCATG+AGG | 0.637346 | 1.1:-78641879 | None:intergenic |
| ATGAGCTATCAATACCAGAT+CGG | 0.639378 | 1.1:-78642784 | None:intergenic |
| AAATGACCCAATCACCAGAA+GGG | 0.644980 | 1.1:-78642198 | None:intergenic |
| GAAACAGAACTAGACTTGGA+GGG | 0.645076 | 1.1:-78646501 | None:intergenic |
| CACTCACCGCTCGACCAACA+CGG | 0.652025 | 1.1:-78642862 | None:intergenic |
| TACAAGTAGCAAAAGTGATG+GGG | 0.652083 | 1.1:+78645120 | MS.gene76268:CDS |
| TGAATAGAGTGTAACTCTCG+GGG | 0.654334 | 1.1:+78644404 | MS.gene76268:intron |
| GAACAAATACAGGTAACTGG+TGG | 0.660255 | 1.1:-78645250 | None:intergenic |
| AGAGTACCTTAGAAATGGCG+TGG | 0.660342 | 1.1:-78642252 | None:intergenic |
| CCAGAAGGGAATCTAGCAAG+AGG | 0.661778 | 1.1:-78642184 | None:intergenic |
| AATGCAAGTGTACACCTGCA+AGG | 0.668958 | 1.1:+78644914 | MS.gene76268:CDS |
| TGACGGACTTCAAATACTGG+AGG | 0.672492 | 1.1:-78644690 | None:intergenic |
| AATAGGAAGCCTATTGACAG+TGG | 0.683426 | 1.1:-78646583 | None:intergenic |
| GCACCTCTATACCACCAACA+AGG | 0.695466 | 1.1:-78644192 | None:intergenic |
| GAGTACATAGTGATTCCTGG+TGG | 0.700030 | 1.1:+78646330 | MS.gene76268:CDS |
| GGTGGAATTTCGCAACACCA+CGG | 0.701018 | 1.1:-78645232 | None:intergenic |
| ACAGCACACGTAAATGTAGG+TGG | 0.701363 | 1.1:-78644480 | None:intergenic |
| TCATAGGTTAGATTCAACTG+TGG | 0.703566 | 1.1:+78644536 | MS.gene76268:CDS |
| TTCTGACAGAGAGTATGACG+AGG | 0.719203 | 1.1:+78644815 | MS.gene76268:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATATTATATTATTAATTA+AGG | - | chr1.1:78643458-78643477 | None:intergenic | 0.0% |
| !! | CTTTACATTAATTAATTAAT+TGG | + | chr1.1:78642453-78642472 | MS.gene76268:intron | 10.0% |
| !! | TTAAACTAGATAAAATAAAA+AGG | - | chr1.1:78643701-78643720 | None:intergenic | 10.0% |
| !!! | AATTTTATTGTATTTCTATA+CGG | + | chr1.1:78646286-78646305 | MS.gene76268:intron | 10.0% |
| !!! | CTTATTTTATTTCTTAATAA+CGG | + | chr1.1:78645050-78645069 | MS.gene76268:intron | 10.0% |
| !!! | TTATTTTATTTCTTAATAAC+GGG | + | chr1.1:78645051-78645070 | MS.gene76268:intron | 10.0% |
| !! | AACACAATAATAAATAATCT+AGG | - | chr1.1:78646240-78646259 | None:intergenic | 15.0% |
| !! | GATTAATTATTATGAATAAG+TGG | - | chr1.1:78642314-78642333 | None:intergenic | 15.0% |
| !!! | AAAACAATTTATTGTTGTTA+AGG | - | chr1.1:78641904-78641923 | None:intergenic | 15.0% |
| !! | AAAATTCATTATAAGGCAAA+AGG | - | chr1.1:78645331-78645350 | None:intergenic | 20.0% |
| !! | AAATTAGATACTAATTGAGT+GGG | - | chr1.1:78645548-78645567 | None:intergenic | 20.0% |
| !! | ACCATTATAATTGATGAAAT+TGG | + | chr1.1:78644055-78644074 | MS.gene76268:CDS | 20.0% |
| !! | AGGAACAAAAATTCATTATA+AGG | - | chr1.1:78645338-78645357 | None:intergenic | 20.0% |
| !! | ATTATAAATCATAACCTTGA+AGG | - | chr1.1:78644240-78644259 | None:intergenic | 20.0% |
| !! | GCAGTATTTATTTAGTTATT+TGG | + | chr1.1:78644627-78644646 | MS.gene76268:intron | 20.0% |
| !! | GTAAAGTAAATAAAGAACAT+TGG | - | chr1.1:78642439-78642458 | None:intergenic | 20.0% |
| !! | TCCAATTTCATCAATTATAA+TGG | - | chr1.1:78644059-78644078 | None:intergenic | 20.0% |
| !! | TGATCTTAAAAAATGTTTAC+AGG | - | chr1.1:78646092-78646111 | None:intergenic | 20.0% |
| !! | TGCTACAAAAAAAATTAGAT+TGG | - | chr1.1:78644324-78644343 | None:intergenic | 20.0% |
| !! | TTAAACAATTGTGTTTGAAT+TGG | + | chr1.1:78646200-78646219 | MS.gene76268:intron | 20.0% |
| !!! | TCATTTTGACTGTAAAAAAA+AGG | - | chr1.1:78643250-78643269 | None:intergenic | 20.0% |
| !!! | TTTGTTTGGTTTATTGTTAT+AGG | + | chr1.1:78642739-78642758 | MS.gene76268:intron | 20.0% |
| ! | AAAATAAAAAGGAAACTGAC+AGG | - | chr1.1:78643690-78643709 | None:intergenic | 25.0% |
| ! | AAATATTTCACACAGAAGAT+GGG | - | chr1.1:78645584-78645603 | None:intergenic | 25.0% |
| ! | AATTGTTTATCCAAAAACAG+AGG | - | chr1.1:78642284-78642303 | None:intergenic | 25.0% |
| ! | ATAAATGCGCTAAAAAGAAA+AGG | - | chr1.1:78645671-78645690 | None:intergenic | 25.0% |
| ! | ATAACTAAGTAAATGTCGAA+AGG | + | chr1.1:78642679-78642698 | MS.gene76268:intron | 25.0% |
| ! | ATAACTCAAATTTCACAAGT+CGG | - | chr1.1:78646026-78646045 | None:intergenic | 25.0% |
| ! | ATATTCCATTATAGAAGATG+AGG | - | chr1.1:78644582-78644601 | None:intergenic | 25.0% |
| ! | ATCAATAAACATCATTAACG+TGG | - | chr1.1:78644376-78644395 | None:intergenic | 25.0% |
| ! | ATTCTTCATTATGCTTTCAA+TGG | - | chr1.1:78644158-78644177 | None:intergenic | 25.0% |
| ! | ATTGAAGTTGTTATGGATTT+AGG | + | chr1.1:78642154-78642173 | MS.gene76268:CDS | 25.0% |
| ! | GAAATTAGATACTAATTGAG+TGG | - | chr1.1:78645549-78645568 | None:intergenic | 25.0% |
| ! | TAAATATTTCACACAGAAGA+TGG | - | chr1.1:78645585-78645604 | None:intergenic | 25.0% |
| ! | TCATCAATTATAATGGTTTC+AGG | - | chr1.1:78644052-78644071 | None:intergenic | 25.0% |
| ! | TGAAAGTTACACATTAAATG+TGG | - | chr1.1:78645852-78645871 | None:intergenic | 25.0% |
| !! | TAAACCAAATTGTAAGTTGA+GGG | + | chr1.1:78646056-78646075 | MS.gene76268:intron | 25.0% |
| !! | TAAGAAATTTGTTCCTTCAA+TGG | - | chr1.1:78645022-78645041 | None:intergenic | 25.0% |
| !! | TTTGGTTTATTGTTATAGGT+TGG | + | chr1.1:78642743-78642762 | MS.gene76268:intron | 25.0% |
| !!! | CTCTTATTTATTTTCCTTCA+AGG | + | chr1.1:78644223-78644242 | MS.gene76268:intron | 25.0% |
| !!! | CTGCAAGGTAAATTATTTTT+GGG | + | chr1.1:78644929-78644948 | MS.gene76268:intron | 25.0% |
| !!! | TCAGTCTGTATTTTTAATGT+GGG | + | chr1.1:78642411-78642430 | MS.gene76268:intron | 25.0% |
| !!! | TTTCTGATTTTTTAACTCGA+GGG | + | chr1.1:78646150-78646169 | MS.gene76268:intron | 25.0% |
| !!! | TTTTTGTTGTTGAAGAGTAA+CGG | + | chr1.1:78642707-78642726 | MS.gene76268:intron | 25.0% |
| AACTGATAACATACGAGTTT+AGG | - | chr1.1:78642591-78642610 | None:intergenic | 30.0% | |
| AATAAGCCATGAAGAAACAT+CGG | + | chr1.1:78644761-78644780 | MS.gene76268:CDS | 30.0% | |
| AATTGACTGCTTCATCTTTA+TGG | + | chr1.1:78643928-78643947 | MS.gene76268:intron | 30.0% | |
| ACAGTCAAAATGAAGAAGAA+AGG | + | chr1.1:78643257-78643276 | MS.gene76268:intron | 30.0% | |
| ACTATTATCACTCCATTTCA+TGG | - | chr1.1:78644868-78644887 | None:intergenic | 30.0% | |
| AGAGAATATTATCAGGATTC+AGG | + | chr1.1:78644967-78644986 | MS.gene76268:intron | 30.0% | |
| ATAGAAGTAACTGATGACAT+TGG | + | chr1.1:78645155-78645174 | MS.gene76268:CDS | 30.0% | |
| ATGAAATGGAGTGATAATAG+TGG | + | chr1.1:78644867-78644886 | MS.gene76268:CDS | 30.0% | |
| ATTGAAGCAATTGTTGAAAG+AGG | - | chr1.1:78645301-78645320 | None:intergenic | 30.0% | |
| ATTTGCAATCTAATCTTCTG+TGG | + | chr1.1:78643965-78643984 | MS.gene76268:intron | 30.0% | |
| CACAAATGAGTATACACAAA+AGG | - | chr1.1:78645704-78645723 | None:intergenic | 30.0% | |
| CAGTCAAAATGAAGAAGAAA+GGG | + | chr1.1:78643258-78643277 | MS.gene76268:intron | 30.0% | |
| CCAAAAATAATTTACCTTGC+AGG | - | chr1.1:78644931-78644950 | None:intergenic | 30.0% | |
| CGTAAATCATCATGGTTAAT+AGG | - | chr1.1:78642232-78642251 | None:intergenic | 30.0% | |
| CTAAACCAAATTGTAAGTTG+AGG | + | chr1.1:78646055-78646074 | MS.gene76268:intron | 30.0% | |
| GATCATATCACATTTAGTCT+AGG | + | chr1.1:78646107-78646126 | MS.gene76268:intron | 30.0% | |
| GTATTCCTCATCTTCTATAA+TGG | + | chr1.1:78644574-78644593 | MS.gene76268:intron | 30.0% | |
| TAGAAAATCTTCTCTGTTAC+AGG | + | chr1.1:78644663-78644682 | MS.gene76268:intron | 30.0% | |
| TCAATAATTTCAGAACGTCT+TGG | - | chr1.1:78646375-78646394 | None:intergenic | 30.0% | |
| TCATCGTCAATTTCAATATC+TGG | - | chr1.1:78645463-78645482 | None:intergenic | 30.0% | |
| TCTAACTTATCCTGCTAAAT+TGG | + | chr1.1:78645776-78645795 | MS.gene76268:intron | 30.0% | |
| TGCTAAAATCATACATGATC+TGG | + | chr1.1:78642889-78642908 | MS.gene76268:CDS | 30.0% | |
| TTAAAACGTTGACCTGATTA+AGG | - | chr1.1:78642969-78642988 | None:intergenic | 30.0% | |
| TTAAATAGATCCATCCATTC+CGG | + | chr1.1:78644273-78644292 | MS.gene76268:intron | 30.0% | |
| TTAAATCCGATGTTTCTTCA+TGG | - | chr1.1:78644770-78644789 | None:intergenic | 30.0% | |
| TTCCAAATAAACAAGTCACT+TGG | - | chr1.1:78642365-78642384 | None:intergenic | 30.0% | |
| TTGGTAAAACTACCTTAATC+AGG | + | chr1.1:78642954-78642973 | MS.gene76268:CDS | 30.0% | |
| TTTCAACAATTGCTTCAATG+TGG | + | chr1.1:78645302-78645321 | MS.gene76268:intron | 30.0% | |
| TTTGAATAGAGTGTAACTCT+CGG | + | chr1.1:78644402-78644421 | MS.gene76268:intron | 30.0% | |
| ! | AAATTTCACAAGTCGGTTTA+GGG | - | chr1.1:78646019-78646038 | None:intergenic | 30.0% |
| ! | AAGACAATTCTAGAAAGGAA+AGG | + | chr1.1:78644456-78644475 | MS.gene76268:CDS | 30.0% |
| ! | ACTTACAATTTGGTTTAGAG+AGG | - | chr1.1:78646053-78646072 | None:intergenic | 30.0% |
| ! | AGTACTAATCTCAGTCATTT+TGG | + | chr1.1:78643902-78643921 | MS.gene76268:intron | 30.0% |
| ! | CCTGCAAGGTAAATTATTTT+TGG | + | chr1.1:78644928-78644947 | MS.gene76268:intron | 30.0% |
| ! | CTTTTTACTATGTCTGTATG+TGG | + | chr1.1:78642994-78643013 | MS.gene76268:intron | 30.0% |
| ! | GGATGATTTTTCCAATGATT+TGG | + | chr1.1:78644716-78644735 | MS.gene76268:CDS | 30.0% |
| ! | TCAATCTTTGAAAGAAGGAT+GGG | - | chr1.1:78644300-78644319 | None:intergenic | 30.0% |
| ! | TCATTTTCATGTTCCATTGA+AGG | + | chr1.1:78645006-78645025 | MS.gene76268:intron | 30.0% |
| ! | TCTAAGATTAGAGTCTGTAA+AGG | - | chr1.1:78645978-78645997 | None:intergenic | 30.0% |
| ! | TGCAAAAGACAATTCTAGAA+AGG | + | chr1.1:78644451-78644470 | MS.gene76268:CDS | 30.0% |
| ! | TTATTGTATTTCTATACGGC+AGG | + | chr1.1:78646290-78646309 | MS.gene76268:intron | 30.0% |
| ! | TTCAATCTTTGAAAGAAGGA+TGG | - | chr1.1:78644301-78644320 | None:intergenic | 30.0% |
| ! | TTGGTTCAATCTTTGAAAGA+AGG | - | chr1.1:78644305-78644324 | None:intergenic | 30.0% |
| !! | AACGGATATAATGGTTTGTT+TGG | + | chr1.1:78642725-78642744 | MS.gene76268:intron | 30.0% |
| !! | CAGTCTGTATTTTTAATGTG+GGG | + | chr1.1:78642412-78642431 | MS.gene76268:intron | 30.0% |
| !! | CTCAGTCTGTATTTTTAATG+TGG | + | chr1.1:78642410-78642429 | MS.gene76268:intron | 30.0% |
| !! | TTGAAGAGTAACGGATATAA+TGG | + | chr1.1:78642716-78642735 | MS.gene76268:intron | 30.0% |
| !!! | GTTATAGGTTGGTGATTTTT+CGG | + | chr1.1:78642754-78642773 | MS.gene76268:intron | 30.0% |
| !!! | GTTTCTGATTTTTTAACTCG+AGG | + | chr1.1:78646149-78646168 | MS.gene76268:intron | 30.0% |
| AAAGAGGTAGCAATAGCAAA+AGG | - | chr1.1:78645285-78645304 | None:intergenic | 35.0% | |
| AAGAGGTAGCAATAGCAAAA+GGG | - | chr1.1:78645284-78645303 | None:intergenic | 35.0% | |
| AAGGCAGTAAAAATGATCCT+TGG | + | chr1.1:78645391-78645410 | MS.gene76268:CDS | 35.0% | |
| AATCATACATGATCTGGTTG+AGG | + | chr1.1:78642895-78642914 | MS.gene76268:CDS | 35.0% | |
| ACATCCCTCAACTTACAATT+TGG | - | chr1.1:78646063-78646082 | None:intergenic | 35.0% | |
| ACTTTACAAGCCAATTTAGC+AGG | - | chr1.1:78645789-78645808 | None:intergenic | 35.0% | |
| AGAAGCTGAAGAAGATGATT+TGG | - | chr1.1:78641975-78641994 | None:intergenic | 35.0% | |
| AGGCAGTAAAAATGATCCTT+GGG | + | chr1.1:78645392-78645411 | MS.gene76268:CDS | 35.0% | |
| AGTACAAGTAGCAAAAGTGA+TGG | + | chr1.1:78645118-78645137 | MS.gene76268:CDS | 35.0% | |
| ATAGAGTACATAGTGATTCC+TGG | + | chr1.1:78646327-78646346 | MS.gene76268:CDS | 35.0% | |
| ATATCTGGAGACTCATTTGA+TGG | - | chr1.1:78645448-78645467 | None:intergenic | 35.0% | |
| ATGAGCTATCAATACCAGAT+CGG | - | chr1.1:78642787-78642806 | None:intergenic | 35.0% | |
| ATGCATCATACGTAAAAGTG+GGG | - | chr1.1:78642497-78642516 | None:intergenic | 35.0% | |
| CACACTACAAAAACTCAGTT+TGG | - | chr1.1:78642625-78642644 | None:intergenic | 35.0% | |
| CACTAGCAGTTCTTAGATTT+GGG | + | chr1.1:78645748-78645767 | MS.gene76268:intron | 35.0% | |
| CATGCATCATACGTAAAAGT+GGG | - | chr1.1:78642498-78642517 | None:intergenic | 35.0% | |
| CGCGCTATACATATTTCATT+AGG | - | chr1.1:78644350-78644369 | None:intergenic | 35.0% | |
| CTATGCTGCATATTCACATT+TGG | - | chr1.1:78643878-78643897 | None:intergenic | 35.0% | |
| CTTCAAGTGCTTAGTTGTTT+GGG | + | chr1.1:78645636-78645655 | MS.gene76268:intron | 35.0% | |
| GATACATCCAATGAAATTGG+AGG | + | chr1.1:78643800-78643819 | MS.gene76268:CDS | 35.0% | |
| GATTAGAGATCTAGAGATCT+AGG | + | chr1.1:78643296-78643315 | MS.gene76268:intron | 35.0% | |
| GTACAAGTAGCAAAAGTGAT+GGG | + | chr1.1:78645119-78645138 | MS.gene76268:CDS | 35.0% | |
| GTCCAAAAAATAGGTCACTT+GGG | - | chr1.1:78645913-78645932 | None:intergenic | 35.0% | |
| GTGGATACATCCAATGAAAT+TGG | + | chr1.1:78643797-78643816 | MS.gene76268:CDS | 35.0% | |
| GTTACCTGTATTTGTTCTCA+AGG | + | chr1.1:78645256-78645275 | MS.gene76268:CDS | 35.0% | |
| GTTTCTTCATGGCTTATTTC+AGG | - | chr1.1:78644759-78644778 | None:intergenic | 35.0% | |
| TACAAGTAGCAAAAGTGATG+GGG | + | chr1.1:78645120-78645139 | MS.gene76268:CDS | 35.0% | |
| TACCATGGCAAAAATGGTAA+AGG | + | chr1.1:78645372-78645391 | MS.gene76268:CDS | 35.0% | |
| TCAAGTGGTCTGATATTACA+TGG | + | chr1.1:78645942-78645961 | MS.gene76268:intron | 35.0% | |
| TCATAGGTTAGATTCAACTG+TGG | + | chr1.1:78644536-78644555 | MS.gene76268:CDS | 35.0% | |
| TGAGAACAAATACAGGTAAC+TGG | - | chr1.1:78645256-78645275 | None:intergenic | 35.0% | |
| TGCATCGTATAAGTGCAATT+CGG | + | chr1.1:78642807-78642826 | MS.gene76268:CDS | 35.0% | |
| TGCTGGTAGAGAATATTATC+AGG | + | chr1.1:78644960-78644979 | MS.gene76268:intron | 35.0% | |
| TGGAAAAATCATCCCAATGA+CGG | - | chr1.1:78644710-78644729 | None:intergenic | 35.0% | |
| TGGACTCATTGAAGTTGTTA+TGG | + | chr1.1:78642147-78642166 | MS.gene76268:CDS | 35.0% | |
| TGTCCAAAAAATAGGTCACT+TGG | - | chr1.1:78645914-78645933 | None:intergenic | 35.0% | |
| TTGAATAGAGTGTAACTCTC+GGG | + | chr1.1:78644403-78644422 | MS.gene76268:intron | 35.0% | |
| ! | ACAATTTGGTTTAGAGAGGT+TGG | - | chr1.1:78646049-78646068 | None:intergenic | 35.0% |
| ! | AGAACAGAGATGAGATTTTG+TGG | - | chr1.1:78643216-78643235 | None:intergenic | 35.0% |
| ! | AGAGTAGAGTACCTTAGAAA+TGG | - | chr1.1:78642260-78642279 | None:intergenic | 35.0% |
| ! | AGGTAGAACTTCTTTTCTTG+CGG | - | chr1.1:78646527-78646546 | None:intergenic | 35.0% |
| ! | AGTATTTGAAGTCCGTCATT+GGG | + | chr1.1:78644695-78644714 | MS.gene76268:CDS | 35.0% |
| ! | ATGAACACGACATTCAGTTT+TGG | - | chr1.1:78644517-78644536 | None:intergenic | 35.0% |
| ! | ATTTGATGGCTTCTTTATCG+TGG | - | chr1.1:78645434-78645453 | None:intergenic | 35.0% |
| ! | CAAATTTCACAAGTCGGTTT+AGG | - | chr1.1:78646020-78646039 | None:intergenic | 35.0% |
| ! | CAATCTTTGAAAGAAGGATG+GGG | - | chr1.1:78644299-78644318 | None:intergenic | 35.0% |
| ! | CTTAGTTGTTTGGGTCTTAT+TGG | + | chr1.1:78645645-78645664 | MS.gene76268:intron | 35.0% |
| ! | TCATGGCTTATTTCAGGTAT+TGG | - | chr1.1:78644753-78644772 | None:intergenic | 35.0% |
| !! | AGCCAAGTGACTTGTTTATT+TGG | + | chr1.1:78642360-78642379 | MS.gene76268:intron | 35.0% |
| !! | GACGTTCTGAAATTATTGAC+CGG | + | chr1.1:78646376-78646395 | MS.gene76268:CDS | 35.0% |
| !! | GTTTTCTTTGAAAATGCCAC+TGG | + | chr1.1:78643644-78643663 | MS.gene76268:intron | 35.0% |
| !! | TACCATTTTTGCCATGGTAT+TGG | - | chr1.1:78645371-78645390 | None:intergenic | 35.0% |
| !! | TTCAACTGTGGATGCTATTT+TGG | + | chr1.1:78644548-78644567 | MS.gene76268:CDS | 35.0% |
| !!! | TTAACTCGAGGGCTATTTTT+CGG | + | chr1.1:78646161-78646180 | MS.gene76268:intron | 35.0% |
| AAACATATCAAGCTCTGCTG+TGG | - | chr1.1:78642071-78642090 | None:intergenic | 40.0% | |
| AAATGACCCAATCACCAGAA+GGG | - | chr1.1:78642201-78642220 | None:intergenic | 40.0% | |
| AACCGTCAGATGCAAATCAT+TGG | + | chr1.1:78642830-78642849 | MS.gene76268:CDS | 40.0% | |
| AACTTCTTCCATTGGAGATG+AGG | + | chr1.1:78642095-78642114 | MS.gene76268:CDS | 40.0% | |
| AATAGGAAGCCTATTGACAG+TGG | - | chr1.1:78646586-78646605 | None:intergenic | 40.0% | |
| AATTCCATCCTCATCTCCAA+TGG | - | chr1.1:78642106-78642125 | None:intergenic | 40.0% | |
| ACTAATTGAGTGGGCAGAAA+AGG | - | chr1.1:78645539-78645558 | None:intergenic | 40.0% | |
| ACTTGTGCAAAGCTATCAGT+TGG | + | chr1.1:78646407-78646426 | MS.gene76268:CDS | 40.0% | |
| AGAGTCTGTAAAGGATCTGT+TGG | - | chr1.1:78645969-78645988 | None:intergenic | 40.0% | |
| AGCAGAGCTTGATATGTTTC+TGG | + | chr1.1:78642072-78642091 | MS.gene76268:CDS | 40.0% | |
| AGCATGCTTCACCAAATCAT+TGG | - | chr1.1:78644730-78644749 | None:intergenic | 40.0% | |
| AGTTAGCTAGTAGCAGATAG+TGG | - | chr1.1:78642564-78642583 | None:intergenic | 40.0% | |
| ATACATGATCTGGTTGAGGA+AGG | + | chr1.1:78642899-78642918 | MS.gene76268:CDS | 40.0% | |
| ATTCTGTCGTAACTCAGAAC+CGG | - | chr1.1:78645204-78645223 | None:intergenic | 40.0% | |
| CAAAGAGGAGTTCAATTGGT+TGG | + | chr1.1:78644115-78644134 | MS.gene76268:CDS | 40.0% | |
| CAAGTCTTCTTGATGAACGA+TGG | - | chr1.1:78641934-78641953 | None:intergenic | 40.0% | |
| CCAAATCTAAGAACTGCTAG+TGG | - | chr1.1:78645750-78645769 | None:intergenic | 40.0% | |
| CCAACAAGGATCTGAAGATA+AGG | - | chr1.1:78644181-78644200 | None:intergenic | 40.0% | |
| CCACTAGCAGTTCTTAGATT+TGG | + | chr1.1:78645747-78645766 | MS.gene76268:intron | 40.0% | |
| CCATGCATCATACGTAAAAG+TGG | - | chr1.1:78642499-78642518 | None:intergenic | 40.0% | |
| CCTTATCTTCAGATCCTTGT+TGG | + | chr1.1:78644178-78644197 | MS.gene76268:CDS | 40.0% | |
| CTAATTGAGTGGGCAGAAAA+GGG | - | chr1.1:78645538-78645557 | None:intergenic | 40.0% | |
| CTGAATGTCGTGTTCATCAT+AGG | + | chr1.1:78644520-78644539 | MS.gene76268:CDS | 40.0% | |
| CTGAGTTACGACAGAATTCA+TGG | + | chr1.1:78645207-78645226 | MS.gene76268:CDS | 40.0% | |
| GAAACAGAACTAGACTTGGA+GGG | - | chr1.1:78646504-78646523 | None:intergenic | 40.0% | |
| GAACAAATACAGGTAACTGG+TGG | - | chr1.1:78645253-78645272 | None:intergenic | 40.0% | |
| GAGTCTGTAAAGGATCTGTT+GGG | - | chr1.1:78645968-78645987 | None:intergenic | 40.0% | |
| GATCGTTACCCAATCAGAAA+TGG | + | chr1.1:78642016-78642035 | MS.gene76268:CDS | 40.0% | |
| GCTTCAAGTGCTTAGTTGTT+TGG | + | chr1.1:78645635-78645654 | MS.gene76268:intron | 40.0% | |
| GGAGGTTCTATATTGGTCAT+TGG | + | chr1.1:78642920-78642939 | MS.gene76268:CDS | 40.0% | |
| GTAATATCAGACCACTTGAG+TGG | - | chr1.1:78645941-78645960 | None:intergenic | 40.0% | |
| GTCCAATACCATGGCAAAAA+TGG | + | chr1.1:78645366-78645385 | MS.gene76268:intron | 40.0% | |
| GTGAGGATCCATTTCTGATT+GGG | - | chr1.1:78642027-78642046 | None:intergenic | 40.0% | |
| GTGGTCTGTGTCCAAAAAAT+AGG | - | chr1.1:78645922-78645941 | None:intergenic | 40.0% | |
| TAGATTCCCTTCTGGTGATT+GGG | + | chr1.1:78642192-78642211 | MS.gene76268:CDS | 40.0% | |
| TATCTTCAGATCCTTGTTGG+TGG | + | chr1.1:78644181-78644200 | MS.gene76268:CDS | 40.0% | |
| TCAACAGCACACGTAAATGT+AGG | - | chr1.1:78644486-78644505 | None:intergenic | 40.0% | |
| TCAGAAAAGTCTGCTTGTAG+TGG | + | chr1.1:78646546-78646565 | MS.gene76268:CDS | 40.0% | |
| TCCAATGAAATTGGAGGTGA+CGG | + | chr1.1:78643806-78643825 | MS.gene76268:CDS | 40.0% | |
| TGAAGACGATCTAGAGATCT+AGG | + | chr1.1:78643336-78643355 | MS.gene76268:intron | 40.0% | |
| TGAATAGAGTGTAACTCTCG+GGG | + | chr1.1:78644404-78644423 | MS.gene76268:intron | 40.0% | |
| TGAGGAAGGAGGTTCTATAT+TGG | + | chr1.1:78642913-78642932 | MS.gene76268:CDS | 40.0% | |
| TGCTCAAAGAGGAGTTCAAT+TGG | + | chr1.1:78644111-78644130 | MS.gene76268:CDS | 40.0% | |
| TTCATTGCAGTCCAATACCA+TGG | + | chr1.1:78645357-78645376 | MS.gene76268:intron | 40.0% | |
| TTCTTTATCGTGGAGCCAAA+GGG | - | chr1.1:78645424-78645443 | None:intergenic | 40.0% | |
| TTGAACTCCTCTTTGAGCAA+TGG | - | chr1.1:78644110-78644129 | None:intergenic | 40.0% | |
| TTTGCACAAGTTCAATCTGC+CGG | - | chr1.1:78646398-78646417 | None:intergenic | 40.0% | |
| ! | ACTACAAGCAGACTTTTCTG+AGG | - | chr1.1:78646547-78646566 | None:intergenic | 40.0% |
| ! | ATGGTATTGGACTGCAATGA+AGG | - | chr1.1:78645358-78645377 | None:intergenic | 40.0% |
| ! | CAGTATTTGAAGTCCGTCAT+TGG | + | chr1.1:78644694-78644713 | MS.gene76268:CDS | 40.0% |
| ! | CTCTACTCTACCTCTGTTTT+TGG | + | chr1.1:78642271-78642290 | MS.gene76268:intron | 40.0% |
| ! | CTTTTGCACTTTCCTTTTCC+TGG | - | chr1.1:78644439-78644458 | None:intergenic | 40.0% |
| ! | CTTTTGGTACTTAGCCTCAA+GGG | - | chr1.1:78646480-78646499 | None:intergenic | 40.0% |
| ! | GGTAGAACTTCTTTTCTTGC+GGG | - | chr1.1:78646526-78646545 | None:intergenic | 40.0% |
| ! | TCTTTTGGTACTTAGCCTCA+AGG | - | chr1.1:78646481-78646500 | None:intergenic | 40.0% |
| ! | TTGTATTTCTATACGGCAGG+AGG | + | chr1.1:78646293-78646312 | MS.gene76268:intron | 40.0% |
| !! | AAGGTAGTTTTACCAACACC+AGG | - | chr1.1:78642950-78642969 | None:intergenic | 40.0% |
| !! | ATAGTGGATCTGTGATCAAG+AGG | + | chr1.1:78644883-78644902 | MS.gene76268:CDS | 40.0% |
| !! | CAATGACGGACTTCAAATAC+TGG | - | chr1.1:78644696-78644715 | None:intergenic | 40.0% |
| !! | CCACTTTTACGTATGATGCA+TGG | + | chr1.1:78642496-78642515 | MS.gene76268:intron | 40.0% |
| !! | GTTTCTGGAACTTCTTCCAT+TGG | + | chr1.1:78642087-78642106 | MS.gene76268:CDS | 40.0% |
| !! | TGCCTTTACCATTTTTGCCA+TGG | - | chr1.1:78645377-78645396 | None:intergenic | 40.0% |
| !!! | ATTTTTGGGTTTGCATGTGC+TGG | + | chr1.1:78644943-78644962 | MS.gene76268:intron | 40.0% |
| !!! | GACCCAAGTGACCTATTTTT+TGG | + | chr1.1:78645908-78645927 | MS.gene76268:intron | 40.0% |
| AATGCAAGTGTACACCTGCA+AGG | + | chr1.1:78644914-78644933 | MS.gene76268:CDS | 45.0% | |
| ACAGAAGATGGGACTTCAAG+AGG | - | chr1.1:78645573-78645592 | None:intergenic | 45.0% | |
| ACAGCACACGTAAATGTAGG+TGG | - | chr1.1:78644483-78644502 | None:intergenic | 45.0% | |
| ACTCCATTTCATGGATCGAG+TGG | - | chr1.1:78644859-78644878 | None:intergenic | 45.0% | |
| AGAAAAGGGTTGTACCTCCA+AGG | - | chr1.1:78645524-78645543 | None:intergenic | 45.0% | |
| AGGCAAATGCGGAACAATAG+CGG | + | chr1.1:78643102-78643121 | MS.gene76268:intron | 45.0% | |
| ATATTGGTCATTGGACCTCC+TGG | + | chr1.1:78642929-78642948 | MS.gene76268:CDS | 45.0% | |
| ATCAAGCTCTGCTGTGGTTT+CGG | - | chr1.1:78642065-78642084 | None:intergenic | 45.0% | |
| ATCCCACTCGATCCATGAAA+TGG | + | chr1.1:78644853-78644872 | MS.gene76268:CDS | 45.0% | |
| CAATGAGTCCACCAATCTCT+TGG | - | chr1.1:78642138-78642157 | None:intergenic | 45.0% | |
| CAATTGGTTGGAACAGCACA+TGG | + | chr1.1:78644127-78644146 | MS.gene76268:CDS | 45.0% | |
| CAGAAACAAACACAGTCCAG+TGG | - | chr1.1:78643663-78643682 | None:intergenic | 45.0% | |
| CTAGATTCCCTTCTGGTGAT+TGG | + | chr1.1:78642191-78642210 | MS.gene76268:CDS | 45.0% | |
| CTCCATTTCATGGATCGAGT+GGG | - | chr1.1:78644858-78644877 | None:intergenic | 45.0% | |
| CTGATTGGGTAACGATCAGA+GGG | - | chr1.1:78642013-78642032 | None:intergenic | 45.0% | |
| CTTCTTTATCGTGGAGCCAA+AGG | - | chr1.1:78645425-78645444 | None:intergenic | 45.0% | |
| GAAAAGTCTGCTTGTAGTGG+TGG | + | chr1.1:78646549-78646568 | MS.gene76268:CDS | 45.0% | |
| GAAATGACCCAATCACCAGA+AGG | - | chr1.1:78642202-78642221 | None:intergenic | 45.0% | |
| GAGTACATAGTGATTCCTGG+TGG | + | chr1.1:78646330-78646349 | MS.gene76268:CDS | 45.0% | |
| GCAAGTACCATTGCTCAAAG+AGG | + | chr1.1:78644100-78644119 | MS.gene76268:CDS | 45.0% | |
| GCAATGGTACCACTGTCAAT+AGG | + | chr1.1:78646574-78646593 | MS.gene76268:CDS | 45.0% | |
| GCTGATGCAATTCTTGCATC+CGG | + | chr1.1:78645182-78645201 | MS.gene76268:CDS | 45.0% | |
| GGAAACAGAACTAGACTTGG+AGG | - | chr1.1:78646505-78646524 | None:intergenic | 45.0% | |
| GGAACCTCTGTTGTCAATAG+CGG | + | chr1.1:78643015-78643034 | MS.gene76268:intron | 45.0% | |
| GGCACCTTGAGAACAAATAC+AGG | - | chr1.1:78645263-78645282 | None:intergenic | 45.0% | |
| GGTGAGGATCCATTTCTGAT+TGG | - | chr1.1:78642028-78642047 | None:intergenic | 45.0% | |
| TAGACCGCTATTGACAACAG+AGG | - | chr1.1:78643022-78643041 | None:intergenic | 45.0% | |
| TCCACACATAGCTGTCAAAG+CGG | - | chr1.1:78643573-78643592 | None:intergenic | 45.0% | |
| TCCGTCACCTCCAATTTCAT+TGG | - | chr1.1:78643810-78643829 | None:intergenic | 45.0% | |
| TCTGATTGGGTAACGATCAG+AGG | - | chr1.1:78642014-78642033 | None:intergenic | 45.0% | |
| TCTTCCATTGGAGATGAGGA+TGG | + | chr1.1:78642099-78642118 | MS.gene76268:CDS | 45.0% | |
| TTGACAGCTATGTGTGGAAC+TGG | + | chr1.1:78643575-78643594 | MS.gene76268:intron | 45.0% | |
| TTGATCTTCACTGCACCTCA+TGG | + | chr1.1:78641864-78641883 | MS.gene76268:CDS | 45.0% | |
| TTGCAGGTGTACACTTGCAT+TGG | - | chr1.1:78644915-78644934 | None:intergenic | 45.0% | |
| TTGTATCGCCACCAAGAGAT+TGG | + | chr1.1:78642124-78642143 | MS.gene76268:CDS | 45.0% | |
| TTGTCAATAGCGGTCTAACG+CGG | + | chr1.1:78643025-78643044 | MS.gene76268:intron | 45.0% | |
| TTTACGCCACGCCATTTCTA+AGG | + | chr1.1:78642246-78642265 | MS.gene76268:CDS | 45.0% | |
| TTTCTATACGGCAGGAGGTT+CGG | + | chr1.1:78646298-78646317 | MS.gene76268:intron | 45.0% | |
| ! | ACTAGACTTGGAGGGTCTTT+TGG | - | chr1.1:78646496-78646515 | None:intergenic | 45.0% |
| ! | AGAGTACCTTAGAAATGGCG+TGG | - | chr1.1:78642255-78642274 | None:intergenic | 45.0% |
| ! | GGCCAATGATTTGCATCTGA+CGG | - | chr1.1:78642835-78642854 | None:intergenic | 45.0% |
| ! | GTTGTTGTTCCTTTGCCATG+AGG | - | chr1.1:78641882-78641901 | None:intergenic | 45.0% |
| ! | TTCTGACAGAGAGTATGACG+AGG | + | chr1.1:78644815-78644834 | MS.gene76268:CDS | 45.0% |
| ! | TTTCACAAGTCGGTTTAGGG+AGG | - | chr1.1:78646016-78646035 | None:intergenic | 45.0% |
| ! | TTTTCGGATGACAACCGATC+TGG | + | chr1.1:78642770-78642789 | MS.gene76268:CDS | 45.0% |
| !! | AACGGGCACTGTTTTCTTGT+TGG | + | chr1.1:78645068-78645087 | MS.gene76268:intron | 45.0% |
| !! | GATCCTTGTTGGTGGTATAG+AGG | + | chr1.1:78644189-78644208 | MS.gene76268:CDS | 45.0% |
| !! | GTAGTTTTACCAACACCAGG+AGG | - | chr1.1:78642947-78642966 | None:intergenic | 45.0% |
| !! | GTTTCGGGTTGTGAATTCGA+GGG | - | chr1.1:78642049-78642068 | None:intergenic | 45.0% |
| !! | TGACGGACTTCAAATACTGG+AGG | - | chr1.1:78644693-78644712 | None:intergenic | 45.0% |
| !!! | ACTGTGGATGCTATTTTGGC+AGG | + | chr1.1:78644552-78644571 | MS.gene76268:CDS | 45.0% |
| AAGTCTGCTTGTAGTGGTGG+CGG | + | chr1.1:78646552-78646571 | MS.gene76268:CDS | 50.0% | |
| CAAGGGAAGAATCTGCAACC+TGG | - | chr1.1:78646463-78646482 | None:intergenic | 50.0% | |
| CAGGTACGGATCAAAACACC+AGG | + | chr1.1:78646442-78646461 | MS.gene76268:CDS | 50.0% | |
| CAGTTGGCTGCTGAAAAGTC+AGG | + | chr1.1:78646423-78646442 | MS.gene76268:CDS | 50.0% | |
| CATAGTGATTCCTGGTGGAG+AGG | + | chr1.1:78646335-78646354 | MS.gene76268:CDS | 50.0% | |
| CATGATCTGGTTGAGGAAGG+AGG | + | chr1.1:78642902-78642921 | MS.gene76268:CDS | 50.0% | |
| CCACTATTACTACGCGCTTC+AGG | - | chr1.1:78643781-78643800 | None:intergenic | 50.0% | |
| CCAGAAGGGAATCTAGCAAG+AGG | - | chr1.1:78642187-78642206 | None:intergenic | 50.0% | |
| CCTCTTGCTAGATTCCCTTC+TGG | + | chr1.1:78642184-78642203 | MS.gene76268:CDS | 50.0% | |
| CCTGAAGCGCGTAGTAATAG+TGG | + | chr1.1:78643778-78643797 | MS.gene76268:CDS | 50.0% | |
| CGACAGAATTCATGGATCCG+TGG | + | chr1.1:78645215-78645234 | MS.gene76268:CDS | 50.0% | |
| GATGTTCCTCATGCAGGCAT+AGG | + | chr1.1:78643830-78643849 | MS.gene76268:CDS | 50.0% | |
| GATTGTGCAGAGAGACTGCT+AGG | + | chr1.1:78643738-78643757 | MS.gene76268:intron | 50.0% | |
| GCACCTCTATACCACCAACA+AGG | - | chr1.1:78644195-78644214 | None:intergenic | 50.0% | |
| GCGGGAAACAGAACTAGACT+TGG | - | chr1.1:78646508-78646527 | None:intergenic | 50.0% | |
| GGCAAATGCGGAACAATAGC+GGG | + | chr1.1:78643103-78643122 | MS.gene76268:intron | 50.0% | |
| GGCTGCTGAAAAGTCAGGTA+CGG | + | chr1.1:78646428-78646447 | MS.gene76268:CDS | 50.0% | |
| GGTAACGATCAGAGGGTCTT+CGG | - | chr1.1:78642006-78642025 | None:intergenic | 50.0% | |
| GGTGGAATTTCGCAACACCA+CGG | - | chr1.1:78645235-78645254 | None:intergenic | 50.0% | |
| GGTTGCAGATTCTTCCCTTG+AGG | + | chr1.1:78646463-78646482 | MS.gene76268:CDS | 50.0% | |
| TAGCTGTCAAAGCGGAAACG+CGG | - | chr1.1:78643565-78643584 | None:intergenic | 50.0% | |
| TATCGCCACCAAGAGATTGG+TGG | + | chr1.1:78642127-78642146 | MS.gene76268:CDS | 50.0% | |
| TCAAGCTCTGCTGTGGTTTC+GGG | - | chr1.1:78642064-78642083 | None:intergenic | 50.0% | |
| TCAGAGGGTCTTCGGATTTG+AGG | - | chr1.1:78641998-78642017 | None:intergenic | 50.0% | |
| TCCGCTTTGACAGCTATGTG+TGG | + | chr1.1:78643569-78643588 | MS.gene76268:intron | 50.0% | |
| TGAGTCCACCAATCTCTTGG+TGG | - | chr1.1:78642135-78642154 | None:intergenic | 50.0% | |
| TGGCGTGGCGTAAATCATCA+TGG | - | chr1.1:78642240-78642259 | None:intergenic | 50.0% | |
| TTCACTGCACCTCATGGCAA+AGG | + | chr1.1:78641870-78641889 | MS.gene76268:CDS | 50.0% | |
| TTGGACACAGACCACTCAAG+TGG | + | chr1.1:78645927-78645946 | MS.gene76268:intron | 50.0% | |
| ! | ATCCTTGGGCTAGAACCCTT+TGG | + | chr1.1:78645406-78645425 | MS.gene76268:CDS | 50.0% |
| ! | CTTTGAAAGAAGGATGGGGC+CGG | - | chr1.1:78644295-78644314 | None:intergenic | 50.0% |
| !! | ATTGGCCTTACTTGCCGTGT+TGG | + | chr1.1:78642848-78642867 | MS.gene76268:CDS | 50.0% |
| !! | GAACAATAGCGGGTCAACTC+GGG | + | chr1.1:78643113-78643132 | MS.gene76268:intron | 50.0% |
| !! | GGAACAATAGCGGGTCAACT+CGG | + | chr1.1:78643112-78643131 | MS.gene76268:intron | 50.0% |
| !! | GGTTTCGGGTTGTGAATTCG+AGG | - | chr1.1:78642050-78642069 | None:intergenic | 50.0% |
| AAAGAAGGATGGGGCCGGAA+TGG | - | chr1.1:78644290-78644309 | None:intergenic | 55.0% | |
| ACCAAAGCGCAAACCATCGC+TGG | + | chr1.1:78645486-78645505 | MS.gene76268:CDS | 55.0% | |
| AGTCGCGCGTTAGGCAAATG+CGG | + | chr1.1:78643091-78643110 | MS.gene76268:intron | 55.0% | |
| CAGAGAGACTGCTAGGATGC+TGG | + | chr1.1:78643745-78643764 | MS.gene76268:intron | 55.0% | |
| CATTTGCCTAACGCGCGACT+CGG | - | chr1.1:78643091-78643110 | None:intergenic | 55.0% | |
| CTCGACCAACACGGCAAGTA+AGG | - | chr1.1:78642856-78642875 | None:intergenic | 55.0% | |
| GACGGAGATGTTCCTCATGC+AGG | + | chr1.1:78643824-78643843 | MS.gene76268:CDS | 55.0% | |
| GAGTGTAACTCTCGGGGATG+AGG | + | chr1.1:78644410-78644429 | MS.gene76268:intron | 55.0% | |
| GCGTCAATCTCTTCCAGCGA+TGG | - | chr1.1:78645502-78645521 | None:intergenic | 55.0% | |
| GCTGGAAGAGATTGACGCCT+TGG | + | chr1.1:78645504-78645523 | MS.gene76268:CDS | 55.0% | |
| GGAAGAGATTGACGCCTTGG+AGG | + | chr1.1:78645507-78645526 | MS.gene76268:CDS | 55.0% | |
| GGCAAAAAGCGGTTCAACGC+GGG | + | chr1.1:78643155-78643174 | MS.gene76268:intron | 55.0% | |
| GGCCACCCCAAAAATTGACG+CGG | - | chr1.1:78643534-78643553 | None:intergenic | 55.0% | |
| GGGATGAGGAAGCCAGGAAA+AGG | + | chr1.1:78644424-78644443 | MS.gene76268:CDS | 55.0% | |
| GGGCAAAAAGCGGTTCAACG+CGG | + | chr1.1:78643154-78643173 | MS.gene76268:intron | 55.0% | |
| GGGTCAACTCGGGCAAAAAG+CGG | + | chr1.1:78643123-78643142 | MS.gene76268:intron | 55.0% | |
| GGGTTGTGAATTCGAGGGTG+AGG | - | chr1.1:78642044-78642063 | None:intergenic | 55.0% | |
| GGTCAACTCGGGCAAAAAGC+GGG | + | chr1.1:78643124-78643143 | MS.gene76268:intron | 55.0% | |
| GGTTCAACGCGGGCAAAAAG+CGG | + | chr1.1:78643165-78643184 | MS.gene76268:intron | 55.0% | |
| GTCATTGGACCTCCTGGTGT+TGG | + | chr1.1:78642935-78642954 | MS.gene76268:CDS | 55.0% | |
| GTTCAACGCGGGCAAAAAGC+GGG | + | chr1.1:78643166-78643185 | MS.gene76268:intron | 55.0% | |
| TCCTCATGCAGGCATAGGCA+GGG | + | chr1.1:78643835-78643854 | MS.gene76268:CDS | 55.0% | |
| TTCCTCATGCAGGCATAGGC+AGG | + | chr1.1:78643834-78643853 | MS.gene76268:CDS | 55.0% | |
| ! | ACCGCGCCGCGTCAATTTTT+GGG | + | chr1.1:78643525-78643544 | MS.gene76268:intron | 55.0% |
| ! | AGCCAAAGGGTTCTAGCCCA+AGG | - | chr1.1:78645411-78645430 | None:intergenic | 55.0% |
| ! | TACCGCGCCGCGTCAATTTT+TGG | + | chr1.1:78643524-78643543 | MS.gene76268:intron | 55.0% |
| ! | TACTTGCCGTGTTGGTCGAG+CGG | + | chr1.1:78642856-78642875 | MS.gene76268:CDS | 55.0% |
| ! | TCCAGCGATGGTTTGCGCTT+TGG | - | chr1.1:78645490-78645509 | None:intergenic | 55.0% |
| AAGGATGGGGCCGGAATGGA+TGG | - | chr1.1:78644286-78644305 | None:intergenic | 60.0% | |
| AATAGCGGTCTAACGCGGCG+CGG | + | chr1.1:78643030-78643049 | MS.gene76268:intron | 60.0% | |
| AATTGACGCGGCGCGGTAAG+CGG | - | chr1.1:78643522-78643541 | None:intergenic | 60.0% | |
| AGTTCCACAGCCTCTCCACC+AGG | - | chr1.1:78646348-78646367 | None:intergenic | 60.0% | |
| CACTCACCGCTCGACCAACA+CGG | - | chr1.1:78642865-78642884 | None:intergenic | 60.0% | |
| CCCCAAAAATTGACGCGGCG+CGG | - | chr1.1:78643529-78643548 | None:intergenic | 60.0% | |
| GATTCCTGGTGGAGAGGCTG+TGG | + | chr1.1:78646341-78646360 | MS.gene76268:CDS | 60.0% | |
| GCGGGCGCTATTACATGACG+CGG | - | chr1.1:78643492-78643511 | None:intergenic | 60.0% | |
| GGCAAAAAGCGGGTCAACGC+GGG | + | chr1.1:78643134-78643153 | MS.gene76268:intron | 60.0% | |
| GGGCAAAAAGCGGGTCAACG+CGG | + | chr1.1:78643133-78643152 | MS.gene76268:intron | 60.0% | |
| GGGTCAACGCGGGCAAAAAG+CGG | + | chr1.1:78643144-78643163 | MS.gene76268:intron | 60.0% | |
| ! | CCGCGCCGCGTCAATTTTTG+GGG | + | chr1.1:78643526-78643545 | MS.gene76268:intron | 60.0% |
| !! | CGCCGCGTCAATTTTTGGGG+TGG | + | chr1.1:78643529-78643548 | MS.gene76268:intron | 60.0% |
| !! | GCTTGTAGTGGTGGCGGCAA+TGG | + | chr1.1:78646558-78646577 | MS.gene76268:CDS | 60.0% |
| ATGCAGGCATAGGCAGGGCG+AGG | + | chr1.1:78643840-78643859 | MS.gene76268:CDS | 65.0% | |
| ATTGACGCGGCGCGGTAAGC+GGG | - | chr1.1:78643521-78643540 | None:intergenic | 65.0% | |
| CGGTCGCGTTCTGATGCGCT+AGG | - | chr1.1:78643071-78643090 | None:intergenic | 65.0% | |
| CTCTCGGGGATGAGGAAGCC+AGG | + | chr1.1:78644418-78644437 | MS.gene76268:CDS | 65.0% | |
| GCCCTGCCTATGCCTGCATG+AGG | - | chr1.1:78643839-78643858 | None:intergenic | 65.0% | |
| GTCAAAGCGGAAACGCGGCG+CGG | - | chr1.1:78643560-78643579 | None:intergenic | 65.0% | |
| ! | CGTGTTGGTCGAGCGGTGAG+TGG | + | chr1.1:78642863-78642882 | MS.gene76268:CDS | 65.0% |
| ACGCGACCGAGTCGCGCGTT+AGG | + | chr1.1:78643082-78643101 | MS.gene76268:intron | 70.0% | |
| CAGGCATAGGCAGGGCGAGG+AGG | + | chr1.1:78643843-78643862 | MS.gene76268:CDS | 70.0% | |
| CGGTCTAACGCGGCGCGGAG+CGG | + | chr1.1:78643035-78643054 | MS.gene76268:intron | 75.0% | |
| ! | AGCGGAAACGCGGCGCGGCG+CGG | - | chr1.1:78643555-78643574 | None:intergenic | 80.0% |
| ! | CGCGGTAAGCGGGCGCGACG+CGG | - | chr1.1:78643511-78643530 | None:intergenic | 80.0% |
| ! | GCGGTAAGCGGGCGCGACGC+GGG | - | chr1.1:78643510-78643529 | None:intergenic | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.1 | gene | 78641833 | 78646617 | 78641833 | ID=MS.gene76268 |
| chr1.1 | mRNA | 78641833 | 78646617 | 78641833 | ID=MS.gene76268.t1;Parent=MS.gene76268 |
| chr1.1 | exon | 78641833 | 78642267 | 78641833 | ID=MS.gene76268.t1.exon1;Parent=MS.gene76268.t1 |
| chr1.1 | CDS | 78641833 | 78642267 | 78641833 | ID=cds.MS.gene76268.t1;Parent=MS.gene76268.t1 |
| chr1.1 | exon | 78642761 | 78642975 | 78642761 | ID=MS.gene76268.t1.exon2;Parent=MS.gene76268.t1 |
| chr1.1 | CDS | 78642761 | 78642975 | 78642761 | ID=cds.MS.gene76268.t1;Parent=MS.gene76268.t1 |
| chr1.1 | exon | 78643748 | 78643898 | 78643748 | ID=MS.gene76268.t1.exon3;Parent=MS.gene76268.t1 |
| chr1.1 | CDS | 78643748 | 78643898 | 78643748 | ID=cds.MS.gene76268.t1;Parent=MS.gene76268.t1 |
| chr1.1 | exon | 78644019 | 78644210 | 78644019 | ID=MS.gene76268.t1.exon4;Parent=MS.gene76268.t1 |
| chr1.1 | CDS | 78644019 | 78644210 | 78644019 | ID=cds.MS.gene76268.t1;Parent=MS.gene76268.t1 |
| chr1.1 | exon | 78644411 | 78644573 | 78644411 | ID=MS.gene76268.t1.exon5;Parent=MS.gene76268.t1 |
| chr1.1 | CDS | 78644411 | 78644573 | 78644411 | ID=cds.MS.gene76268.t1;Parent=MS.gene76268.t1 |
| chr1.1 | exon | 78644685 | 78644935 | 78644685 | ID=MS.gene76268.t1.exon6;Parent=MS.gene76268.t1 |
| chr1.1 | CDS | 78644685 | 78644935 | 78644685 | ID=cds.MS.gene76268.t1;Parent=MS.gene76268.t1 |
| chr1.1 | exon | 78645101 | 78645277 | 78645101 | ID=MS.gene76268.t1.exon7;Parent=MS.gene76268.t1 |
| chr1.1 | CDS | 78645101 | 78645277 | 78645101 | ID=cds.MS.gene76268.t1;Parent=MS.gene76268.t1 |
| chr1.1 | exon | 78645367 | 78645528 | 78645367 | ID=MS.gene76268.t1.exon8;Parent=MS.gene76268.t1 |
| chr1.1 | CDS | 78645367 | 78645528 | 78645367 | ID=cds.MS.gene76268.t1;Parent=MS.gene76268.t1 |
| chr1.1 | exon | 78646312 | 78646617 | 78646312 | ID=MS.gene76268.t1.exon9;Parent=MS.gene76268.t1 |
| chr1.1 | CDS | 78646312 | 78646617 | 78646312 | ID=cds.MS.gene76268.t1;Parent=MS.gene76268.t1 |
| Gene Sequence |
| Protein sequence |
