AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene84803


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene84803.t1 MTR_4g093510 68.959 538 123 8 1 518 1 514 0.0 707
MS.gene84803.t1 MTR_4g093510 61.628 344 85 9 269 577 141 472 2.23e-104 325
MS.gene84803.t1 MTR_4g093280 67.373 472 132 7 1 464 1 458 0.0 603
MS.gene84803.t1 MTR_4g093280 48.485 297 111 8 269 534 141 426 4.40e-61 209
MS.gene84803.t1 MTR_4g093260 54.785 606 198 15 1 574 1 562 0.0 563
MS.gene84803.t1 MTR_4g093260 53.465 606 197 16 1 574 1 553 0.0 536
MS.gene84803.t1 MTR_4g093260 50.000 504 176 16 103 574 1 460 3.26e-126 382
MS.gene84803.t1 MTR_4g093270 67.037 270 81 4 8 271 7 274 6.26e-123 365
MS.gene84803.t1 MTR_4g093270 60.248 161 45 6 286 444 153 296 2.79e-45 163
MS.gene84803.t1 MTR_4g093270 65.333 75 25 1 453 526 205 279 9.39e-20 90.9
MS.gene84803.t1 MTR_4g108350 41.096 146 78 2 6 146 11 153 1.34e-31 120
MS.gene84803.t1 MTR_5g039530 41.611 149 77 3 12 150 14 162 5.04e-30 116
MS.gene84803.t1 MTR_4g108350 41.803 122 63 2 30 146 26 144 6.72e-25 101
MS.gene84803.t1 MTR_3g452470 34.074 135 78 2 20 146 17 148 2.92e-22 94.0
MS.gene84803.t1 MTR_5g091800 33.083 133 81 2 20 146 17 147 1.60e-20 89.0
MS.gene84803.t1 MTR_8g096670 37.209 86 54 0 15 100 2 87 1.15e-17 79.0
MS.gene84803.t1 MTR_8g096670 34.000 100 63 1 1 100 1 97 8.66e-16 73.9
MS.gene84803.t1 MTR_3g099010 35.000 100 62 1 1 100 1 97 1.02e-13 69.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene84803.t1 AT1G69700 40.230 174 89 6 7 168 11 181 3.31e-30 117
MS.gene84803.t1 AT1G74520 40.909 154 83 3 6 154 8 158 7.25e-30 116
MS.gene84803.t1 AT1G74520 40.909 154 83 3 6 154 8 158 7.25e-30 116
MS.gene84803.t1 AT5G62490 36.054 147 86 3 11 154 13 154 1.36e-22 95.5
MS.gene84803.t1 AT2G42820 37.037 108 64 1 6 113 3 106 3.52e-19 85.1
MS.gene84803.t1 AT5G50720 34.259 108 64 1 7 107 4 111 7.59e-17 77.4
MS.gene84803.t1 AT4G24960 34.940 83 54 0 18 100 15 97 3.25e-15 73.2
MS.gene84803.t1 AT4G24960 33.766 77 51 0 24 100 2 78 1.27e-12 65.9

Find 118 sgRNAs with CRISPR-Local

Find 280 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCCTGTGTTTCCTCCCTTTA+AGG 0.046055 6.3:-49614732 None:intergenic
ACAGACTTTACATATTAATT+TGG 0.211897 6.3:-49613986 None:intergenic
TTCTTCATGGTTTCTCATAC+TGG 0.220863 6.3:+49610767 MS.gene84803:CDS
GACTTGATTTCCCACCTTAA+TGG 0.221230 6.3:+49613107 MS.gene84803:CDS
ACCTTGAATTCCCACCTTAA+AGG 0.229261 6.3:+49614718 MS.gene84803:CDS
CCCTGTGTTTCCTTCCATTA+AGG 0.232179 6.3:-49613121 None:intergenic
CTTCTGTTTCTCCTCCTCTT+TGG 0.235953 6.3:-49614821 None:intergenic
AGAACCTTTCAGAACCCTTT+AGG 0.273993 6.3:+49613953 MS.gene84803:CDS
TTCACTCTCTGCTGTTCCTT+TGG 0.274660 6.3:-49612988 None:intergenic
ACCTTGAATTCCCACATTAA+TGG 0.284729 6.3:+49613868 MS.gene84803:CDS
CGGTGCCCTTGTTCTCTGTT+TGG 0.294742 6.3:-49613403 None:intergenic
CCCTTTAAGGTGGGAATTCA+AGG 0.294789 6.3:-49614719 None:intergenic
GATTCCTTCGGTTTCTACTA+TGG 0.299196 6.3:-49613731 None:intergenic
ATCCTTACTTGCTTGGTTGC+AGG 0.300313 6.3:-49613479 None:intergenic
GGCATTACTTGCTTGGTTGC+AGG 0.306137 6.3:-49612634 None:intergenic
TGATGATAAAGAAATGTTAA+AGG 0.306914 6.3:+49612409 MS.gene84803:CDS
CCTTGAATTCCCACATTAAT+GGG 0.319670 6.3:+49613869 MS.gene84803:CDS
CCTTGAATTCCCACCTTAAA+GGG 0.333471 6.3:+49614719 MS.gene84803:CDS
GCTGACTATTTGCGGTTTCA+TGG 0.335387 6.3:-49612061 None:intergenic
TTCTAGGCCTCTTGTTGCTC+TGG 0.337704 6.3:+49610930 MS.gene84803:intron
GGAATTTCTTGCTTGGTTGC+AGG 0.340621 6.3:-49613458 None:intergenic
TGTGGGAATTCAAGGTTATC+TGG 0.341223 6.3:-49613861 None:intergenic
TCATTTGTCACTTCTGCATC+AGG 0.350141 6.3:-49612374 None:intergenic
GCTAGCAATGAGTTTCTCTA+AGG 0.350536 6.3:-49612178 None:intergenic
GGTAGTAAATGGCTTCTTCA+TGG 0.362420 6.3:+49610754 None:intergenic
CCCATTAATGTGGGAATTCA+AGG 0.362628 6.3:-49613869 None:intergenic
CTAAGGATTTGATCTCATAT+TGG 0.368288 6.3:+49611126 MS.gene84803:CDS
ATATTCAAAGAGGTAAATTA+AGG 0.374191 6.3:-49611159 None:intergenic
TTGGAATTAATCAACCTAAA+GGG 0.375665 6.3:-49613967 None:intergenic
CCTTTGGTTTCCACTTTGAC+AGG 0.379956 6.3:-49612972 None:intergenic
CTAAGCTAACGATCATCTTC+TGG 0.383898 6.3:+49611983 MS.gene84803:CDS
ATAAGTTCAATCCCAATGTT+AGG 0.402051 6.3:+49614854 MS.gene84803:CDS
AACATTAGTGATGGATGATA+AGG 0.405429 6.3:+49614912 MS.gene84803:CDS
GGTTGCAGGAATTTCTTGCT+TGG 0.415652 6.3:-49613465 None:intergenic
GAAAGGTTCTTCTGCGGAGC+AGG 0.422036 6.3:-49613940 None:intergenic
GTCACTGCCATCGATTCCTT+CGG 0.437292 6.3:-49613743 None:intergenic
TTTGGAATTAATCAACCTAA+AGG 0.440188 6.3:-49613968 None:intergenic
TGAATGAATCCTTACTTGCT+TGG 0.445111 6.3:-49613486 None:intergenic
TGGCTCATCATACCGGACTT+TGG 0.448937 6.3:+49612003 MS.gene84803:CDS
TGACTCATATGCTGAAACTA+AGG 0.450349 6.3:+49611109 MS.gene84803:CDS
ATGTTCACCTTCTGCGAAGC+AGG 0.458818 6.3:-49614790 None:intergenic
GTGGACTTGTGCTTTATGTT+TGG 0.459600 6.3:+49613825 MS.gene84803:CDS
GGAGCTAATATTCTTAAGAA+AGG 0.463915 6.3:+49614880 MS.gene84803:CDS
GTCAGTTTCAATTGCTTGTA+CGG 0.466858 6.3:-49611090 None:intergenic
AAAGAATTTACCATAGAAGA+AGG 0.467323 6.3:-49611193 None:intergenic
TATTCTTAAGAAAGGATTGA+AGG 0.469642 6.3:+49614888 MS.gene84803:CDS
TTGACATCAGGTTTCAGCTC+TGG 0.469653 6.3:+49611953 MS.gene84803:intron
AGGGTCTTTGTGCAGACAAA+TGG 0.469962 6.3:+49612547 MS.gene84803:intron
GAGAGATATATGAAAGAGAA+TGG 0.473137 6.3:+49612147 MS.gene84803:CDS
GTGGACTTGTGCTATATGTT+TGG 0.475777 6.3:+49613064 MS.gene84803:CDS
TTAGCTCCACTCCTAACATT+GGG 0.476070 6.3:-49614865 None:intergenic
ACCTTAAAGGGAGGAAACAC+AGG 0.478853 6.3:+49614731 MS.gene84803:CDS
TGAAACCGCAAATAGTCAGC+TGG 0.488233 6.3:+49612064 MS.gene84803:CDS
GTGTTTCCTCCCTTTAAGGT+GGG 0.490716 6.3:-49614728 None:intergenic
TGAATGAGGCATTACTTGCT+TGG 0.492437 6.3:-49612641 None:intergenic
TGTGTTTCCTCCCATTAATG+TGG 0.493651 6.3:-49613879 None:intergenic
TAAGAAGCTCGTCCAAAGTC+CGG 0.504580 6.3:-49612015 None:intergenic
TGTGTTTCCTCCCTTTAAGG+TGG 0.506534 6.3:-49614729 None:intergenic
ATTAGCTCCACTCCTAACAT+TGG 0.510104 6.3:-49614866 None:intergenic
CATCTTCTGGCTCATCATAC+CGG 0.514317 6.3:+49611996 MS.gene84803:CDS
GAACAAGGGCACCGAGTATG+TGG 0.516613 6.3:+49613412 MS.gene84803:CDS
ATTCTTAAGAAAGGATTGAA+GGG 0.518639 6.3:+49614889 MS.gene84803:CDS
ACATTAGTGATGGATGATAA+GGG 0.522687 6.3:+49614913 MS.gene84803:CDS
GAAACCGCAAATAGTCAGCT+GGG 0.529318 6.3:+49612065 MS.gene84803:CDS
TCCTCGGAGTTCTACACAGA+AGG 0.530592 6.3:+49613028 MS.gene84803:CDS
TGTGTTTCCTTCCATTAAGG+TGG 0.531895 6.3:-49613118 None:intergenic
ATCGATGGCAGTGACGCAGC+TGG 0.532997 6.3:+49613751 MS.gene84803:CDS
AGAAGGGAGTGCAGAGAGAG+TGG 0.533062 6.3:+49613045 MS.gene84803:CDS
TAAATAGCTTCTGGAAGAAG+TGG 0.534630 6.3:+49612091 MS.gene84803:CDS
ATCAATAGCCTCCACATACT+CGG 0.534744 6.3:-49613423 None:intergenic
ACCTACCCAGCAGAAGCAAA+AGG 0.535322 6.3:+49613175 MS.gene84803:CDS
GTGTTTCCTCCCATTAATGT+GGG 0.538572 6.3:-49613878 None:intergenic
AGAAGGAAGTGCAGAAAGAG+TGG 0.545798 6.3:+49613806 MS.gene84803:CDS
TCTTAAGAGTTCTACGCAGA+AGG 0.546063 6.3:+49614639 MS.gene84803:CDS
GTGTTTCCTTCCATTAAGGT+GGG 0.556051 6.3:-49613117 None:intergenic
AAGACTCCAAACAGAGAACA+AGG 0.564033 6.3:+49613397 MS.gene84803:CDS
GTGGACTTGTGCTTTGTGCT+CGG 0.565292 6.3:+49614675 MS.gene84803:CDS
TGATTTCCCACCTTAATGGA+AGG 0.565801 6.3:+49613111 MS.gene84803:CDS
ACCTTAATGGAAGGAAACAC+AGG 0.566703 6.3:+49613120 MS.gene84803:CDS
TTGTGCAGACAAATGGAGAA+AGG 0.568069 6.3:+49612554 MS.gene84803:intron
AGAGAAACTCATTGCTAGCA+AGG 0.570547 6.3:+49612182 MS.gene84803:CDS
GAAGCAACCTGCTTCGCAGA+AGG 0.574291 6.3:+49614783 MS.gene84803:CDS
GCAGAGAGTGAAAGAGCTGG+TGG 0.576755 6.3:+49612999 MS.gene84803:CDS
GATGGCAGTGACGCAGCTGG+TGG 0.582251 6.3:+49613754 MS.gene84803:CDS
TTCAATCCCAATGTTAGGAG+TGG 0.583729 6.3:+49614859 MS.gene84803:CDS
GAGTTCTACCGCTACACAGA+AGG 0.584990 6.3:+49613789 MS.gene84803:CDS
AGAAGGAAGTGCAGAAAGAG+TGG 0.586530 6.3:+49614656 MS.gene84803:CDS
CTGCACTTCCTTCTGTGTAG+CGG 0.588324 6.3:-49613797 None:intergenic
ATTGAAGGGAACATTAGTGA+TGG 0.589411 6.3:+49614903 MS.gene84803:CDS
TGGGTTGATTCCTGTCAAAG+TGG 0.594786 6.3:+49612962 MS.gene84803:CDS
GAGCTGGTGGAGAAGTTCCT+CGG 0.597212 6.3:+49613012 MS.gene84803:CDS
ACAGCAGAGAGTGAAAGAGC+TGG 0.604386 6.3:+49612996 MS.gene84803:CDS
TCAACCTAAAGGGTTCTGAA+AGG 0.610088 6.3:-49613957 None:intergenic
ATGATCGTTAGCTTAGTGTA+CGG 0.612909 6.3:-49611976 None:intergenic
CAGTGACGCAGCTGGTGGAG+AGG 0.615419 6.3:+49613759 MS.gene84803:CDS
TCATAAAAGCATATTCAAAG+AGG 0.621411 6.3:-49611169 None:intergenic
GTAGAAACCGAAGGAATCGA+TGG 0.625378 6.3:+49613736 MS.gene84803:CDS
TGAATTCCCACATTAATGGG+AGG 0.637945 6.3:+49613872 MS.gene84803:CDS
CCTCGGAGTTCTACACAGAA+GGG 0.638306 6.3:+49613029 MS.gene84803:CDS
AAACCGCAAATAGTCAGCTG+GGG 0.642341 6.3:+49612066 MS.gene84803:CDS
TATTGTAGAACACAATGTGT+AGG 0.642645 6.3:+49612351 MS.gene84803:intron
TGAATTCCCACCTTAAAGGG+AGG 0.644369 6.3:+49614722 MS.gene84803:CDS
CATCTATCAGTCCAAAGAGG+AGG 0.649279 6.3:+49614810 MS.gene84803:CDS
CCTGTCAAAGTGGAAACCAA+AGG 0.653192 6.3:+49612972 MS.gene84803:CDS
GGTTCTGAAAGGTTCTTCTG+CGG 0.657548 6.3:-49613946 None:intergenic
TGTTCCTTTCGTTTCCACTG+TGG 0.658741 6.3:-49614587 None:intergenic
TCAGCCACAGTGGAAACGAA+AGG 0.659859 6.3:+49614583 MS.gene84803:CDS
AAATGCATCATCAGCCACAG+TGG 0.664078 6.3:+49614573 MS.gene84803:CDS
GGATACACCAGAGCAACAAG+AGG 0.670998 6.3:-49610937 None:intergenic
CAAGGGCACCGAGTATGTGG+AGG 0.677714 6.3:+49613415 MS.gene84803:CDS
TCAACCATAGTAGAAACCGA+AGG 0.682906 6.3:+49613727 MS.gene84803:CDS
CCTTAATGGAAGGAAACACA+GGG 0.683958 6.3:+49613121 MS.gene84803:CDS
AACCGCAAATAGTCAGCTGG+GGG 0.687491 6.3:+49612067 MS.gene84803:CDS
CCTTAAAGGGAGGAAACACA+GGG 0.688692 6.3:+49614732 MS.gene84803:CDS
TGTGTAGCGGTAGAACTCTG+AGG 0.690266 6.3:-49613784 None:intergenic
GAACATCTATCAGTCCAAAG+AGG 0.699297 6.3:+49614807 MS.gene84803:CDS
AGACTCCAAACAGAGAACAA+GGG 0.699952 6.3:+49613398 MS.gene84803:CDS
CCCTTCTGTGTAGAACTCCG+AGG 0.719311 6.3:-49613029 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TGACAAATAATTATAACAAA+AGG + chr6.3:49614239-49614258 MS.gene84803:intron 15.0%
!! TTTATTCTTCCAATTATATT+GGG + chr6.3:49612876-49612895 MS.gene84803:intron 15.0%
!!! TAAATTTTTAGTAGAGATTA+AGG + chr6.3:49611901-49611920 MS.gene84803:intron 15.0%
!!! TTGCTTTTTGTTATTTTTTA+AGG - chr6.3:49611588-49611607 None:intergenic 15.0%
!! ACAGACTTTACATATTAATT+TGG - chr6.3:49613989-49614008 None:intergenic 20.0%
!! ATATTCAAAGAGGTAAATTA+AGG - chr6.3:49611162-49611181 None:intergenic 20.0%
!! GTTTATTCTTCCAATTATAT+TGG + chr6.3:49612875-49612894 MS.gene84803:intron 20.0%
!! TAGTAAGTCATATATGTAAT+TGG - chr6.3:49614458-49614477 None:intergenic 20.0%
!! TGATAATAAAAAAATACCCA+AGG + chr6.3:49613232-49613251 MS.gene84803:CDS 20.0%
!! TGATGATAAAGAAATGTTAA+AGG + chr6.3:49612409-49612428 MS.gene84803:CDS 20.0%
!! TGTCAAAACAATAATGTAAA+AGG - chr6.3:49611010-49611029 None:intergenic 20.0%
!! TTAGCAAGTAATAAATAAGT+AGG - chr6.3:49611752-49611771 None:intergenic 20.0%
!! TTTCATAAATGATCAATAGA+TGG - chr6.3:49611376-49611395 None:intergenic 20.0%
!!! ACATTTTCAACATATATCTA+TGG - chr6.3:49612847-49612866 None:intergenic 20.0%
!!! CTAAAATTTTAATTTGTCCT+TGG - chr6.3:49613537-49613556 None:intergenic 20.0%
!!! TAAAACTTTAATTTGTCCTT+GGG - chr6.3:49612691-49612710 None:intergenic 20.0%
!!! TGCAGGATATAATTTTTTTT+GGG + chr6.3:49612943-49612962 MS.gene84803:intron 20.0%
!!! TGGAAGATTTCTATTTTAAA+CGG - chr6.3:49613517-49613536 None:intergenic 20.0%
!!! TTGCAGGATATAATTTTTTT+TGG + chr6.3:49612942-49612961 MS.gene84803:intron 20.0%
!!! TTTAAAATAGAAATCTTCCA+AGG + chr6.3:49613517-49613536 MS.gene84803:intron 20.0%
!!! TTTTTTATTATCAGTAGCTA+TGG - chr6.3:49613225-49613244 None:intergenic 20.0%
!!! TTTTTTGTTTTTTGCGATTA+TGG + chr6.3:49611048-49611067 MS.gene84803:intron 20.0%
! AAACATAAGTGAAAGAACTA+AGG + chr6.3:49611401-49611420 MS.gene84803:intron 25.0%
! AAAGAATTTACCATAGAAGA+AGG - chr6.3:49611196-49611215 None:intergenic 25.0%
! AAAGAGAAGGAAAATAAAGA+AGG - chr6.3:49610911-49610930 None:intergenic 25.0%
! AAAGATGAAGAAAATAAAGG+AGG - chr6.3:49610845-49610864 None:intergenic 25.0%
! AAATGTGGTAAGTATTACAT+TGG - chr6.3:49611245-49611264 None:intergenic 25.0%
! AAGAGAAGGAAAATAAAGAA+GGG - chr6.3:49610910-49610929 None:intergenic 25.0%
! AAGATGAAGAAAATAAAGGA+GGG - chr6.3:49610844-49610863 None:intergenic 25.0%
! AGATTTACTCCATTTATCTA+CGG - chr6.3:49611711-49611730 None:intergenic 25.0%
! ATAAATGATCAATAGATGGA+GGG - chr6.3:49611372-49611391 None:intergenic 25.0%
! ATAAATGCACTATTACACTT+AGG - chr6.3:49611309-49611328 None:intergenic 25.0%
! ATGATTCATAGAAATATTGC+CGG - chr6.3:49611808-49611827 None:intergenic 25.0%
! ATTATTACTCATGCATACAA+AGG - chr6.3:49612822-49612841 None:intergenic 25.0%
! ATTCTTAAGAAAGGATTGAA+GGG + chr6.3:49614889-49614908 MS.gene84803:CDS 25.0%
! CAAATGCTATCAAAACTAAT+AGG - chr6.3:49614399-49614418 None:intergenic 25.0%
! CAATATATACACACAAATAC+AGG - chr6.3:49614496-49614515 None:intergenic 25.0%
! GAGAAAGATGAAGAAAATAA+AGG - chr6.3:49610848-49610867 None:intergenic 25.0%
! GTAATAGTGCATTTATGTAT+TGG + chr6.3:49611313-49611332 MS.gene84803:intron 25.0%
! TAAATGCACTATTACACTTA+GGG - chr6.3:49611308-49611327 None:intergenic 25.0%
! TACAAACAACCCAATATAAT+TGG - chr6.3:49612888-49612907 None:intergenic 25.0%
! TATCAAAACTAATAGGAGAA+TGG - chr6.3:49614392-49614411 None:intergenic 25.0%
! TATTCTTAAGAAAGGATTGA+AGG + chr6.3:49614888-49614907 MS.gene84803:CDS 25.0%
! TGAAAGTTGAAAAGCAAATT+GGG + chr6.3:49614122-49614141 MS.gene84803:intron 25.0%
! TTATTACTCATGCATACAAA+GGG - chr6.3:49612821-49612840 None:intergenic 25.0%
! TTGAAAGTTGAAAAGCAAAT+TGG + chr6.3:49614121-49614140 MS.gene84803:intron 25.0%
! TTGGAATTAATCAACCTAAA+GGG - chr6.3:49613970-49613989 None:intergenic 25.0%
! TTTGAGTGAATATATGAATG+AGG - chr6.3:49612658-49612677 None:intergenic 25.0%
!! AATGCTTTTATCATTTTGCA+TGG + chr6.3:49610796-49610815 MS.gene84803:CDS 25.0%
!! ACAACTCTAGAAAAATTATG+TGG + chr6.3:49612280-49612299 MS.gene84803:intron 25.0%
!! ACTTGTCTAAAATTCAAAGT+TGG + chr6.3:49614064-49614083 MS.gene84803:intron 25.0%
!! CAACTCTAGAAAAATTATGT+GGG + chr6.3:49612281-49612300 MS.gene84803:intron 25.0%
!! CACTTCGTGTAAATATTTTA+AGG + chr6.3:49614269-49614288 MS.gene84803:intron 25.0%
!! TAAGGTTCACTTGTTAAAAT+TGG + chr6.3:49611419-49611438 MS.gene84803:intron 25.0%
!! TCATAAAAGCATATTCAAAG+AGG - chr6.3:49611172-49611191 None:intergenic 25.0%
!! TGACATTTTTATCCTATGTT+GGG - chr6.3:49612253-49612272 None:intergenic 25.0%
!! TGATTTTGTTGAATTGTTGT+TGG + chr6.3:49613659-49613678 MS.gene84803:intron 25.0%
!! TTAGTTTGAGTATTGCTATT+TGG + chr6.3:49614214-49614233 MS.gene84803:intron 25.0%
!! TTATTTTCCTTCTCTTTTCT+AGG + chr6.3:49610914-49610933 MS.gene84803:intron 25.0%
!! TTGACATTTTTATCCTATGT+TGG - chr6.3:49612254-49612273 None:intergenic 25.0%
!! TTTAAGAATCAGCAATGTTT+TGG - chr6.3:49614180-49614199 None:intergenic 25.0%
!! TTTGGAATTAATCAACCTAA+AGG - chr6.3:49613971-49613990 None:intergenic 25.0%
!!! AAAACTTTAATTTGTCCTTG+GGG - chr6.3:49612690-49612709 None:intergenic 25.0%
!!! AAACATTGCTGATTCTTAAA+TGG + chr6.3:49614180-49614199 MS.gene84803:intron 25.0%
!!! CTAAAACTTTAATTTGTCCT+TGG - chr6.3:49612692-49612711 None:intergenic 25.0%
!!! TTTTTTGCGATTATGGTTTT+TGG + chr6.3:49611055-49611074 MS.gene84803:intron 25.0%
AAGTTCAATCAGGTACTAAA+AGG - chr6.3:49611935-49611954 None:intergenic 30.0%
ACAGAGCAAAAAGATATCAA+AGG + chr6.3:49612583-49612602 MS.gene84803:CDS 30.0%
ACGTCATTTGTGAAATGTTT+AGG + chr6.3:49612729-49612748 MS.gene84803:intron 30.0%
ATAAGTTCAATCCCAATGTT+AGG + chr6.3:49614854-49614873 MS.gene84803:CDS 30.0%
ATAGTGCATTTATGTATTGG+TGG + chr6.3:49611316-49611335 MS.gene84803:intron 30.0%
ATATGGCATCTCACATAAAT+GGG + chr6.3:49614034-49614053 MS.gene84803:intron 30.0%
ATCCTGCAAATGGTAAAAAT+TGG - chr6.3:49614521-49614540 None:intergenic 30.0%
CATAAATGATCAATAGATGG+AGG - chr6.3:49611373-49611392 None:intergenic 30.0%
CTAAGGATTTGATCTCATAT+TGG + chr6.3:49611126-49611145 MS.gene84803:CDS 30.0%
GAAAGTTGAAAAGCAAATTG+GGG + chr6.3:49614123-49614142 MS.gene84803:intron 30.0%
GAGAGATATATGAAAGAGAA+TGG + chr6.3:49612147-49612166 MS.gene84803:CDS 30.0%
GATTAAGATCAAGTTCAATC+AGG - chr6.3:49611863-49611882 None:intergenic 30.0%
GATTTACTCCATTTATCTAC+GGG - chr6.3:49611710-49611729 None:intergenic 30.0%
GCAAAAAGATATCAAAGGTT+TGG + chr6.3:49612588-49612607 MS.gene84803:CDS 30.0%
GGAGCTAATATTCTTAAGAA+AGG + chr6.3:49614880-49614899 MS.gene84803:CDS 30.0%
TATATGGCATCTCACATAAA+TGG + chr6.3:49614033-49614052 MS.gene84803:intron 30.0%
TATTGTAGAACACAATGTGT+AGG + chr6.3:49612351-49612370 MS.gene84803:intron 30.0%
TCACATCAAAACTTTACCTT+GGG - chr6.3:49613251-49613270 None:intergenic 30.0%
TCAGAGTAAAAAAACGAACT+TGG - chr6.3:49611831-49611850 None:intergenic 30.0%
TCTCGTAAATGGATAATTAC+CGG + chr6.3:49611472-49611491 MS.gene84803:intron 30.0%
TTAATACAAACACGCAAGAT+TGG - chr6.3:49614341-49614360 None:intergenic 30.0%
TTAGTCTCTATGCGTATATT+TGG + chr6.3:49612916-49612935 MS.gene84803:intron 30.0%
TTATAAAAGAGAGAGAGAGT+AGG + chr6.3:49611615-49611634 MS.gene84803:intron 30.0%
TTCACATCAAAACTTTACCT+TGG - chr6.3:49613252-49613271 None:intergenic 30.0%
! AAAATTTTAGACCTGAGTTG+AGG + chr6.3:49613547-49613566 MS.gene84803:intron 30.0%
! AGAAATATTGCCGGTTAATT+TGG - chr6.3:49611799-49611818 None:intergenic 30.0%
! AGGTCATTTGTGAAAGTTTT+AGG + chr6.3:49613579-49613598 MS.gene84803:intron 30.0%
! ATCCAATTTTTACCATTTGC+AGG + chr6.3:49614516-49614535 MS.gene84803:intron 30.0%
! CTTTTATGAACCTTCTTCTA+TGG + chr6.3:49611183-49611202 MS.gene84803:CDS 30.0%
! TACTCTCTCTCTCTTTTATA+AGG - chr6.3:49611616-49611635 None:intergenic 30.0%
! TGATATCTTTTTGCTCTGTT+TGG - chr6.3:49612582-49612601 None:intergenic 30.0%
! TTTATTACTTGCTAAAGCCA+CGG + chr6.3:49611757-49611776 MS.gene84803:intron 30.0%
!! AAACTTTAATTTGTCCTTGG+GGG - chr6.3:49612689-49612708 None:intergenic 30.0%
!! AACATTAGTGATGGATGATA+AGG + chr6.3:49614912-49614931 MS.gene84803:CDS 30.0%
!! ACATTAGTGATGGATGATAA+GGG + chr6.3:49614913-49614932 MS.gene84803:CDS 30.0%
!! TGTTATTTCGCCAAATTAAC+CGG + chr6.3:49611786-49611805 MS.gene84803:intron 30.0%
!!! TTTGCTATTTTGCAGAAAAC+AGG + chr6.3:49614309-49614328 MS.gene84803:intron 30.0%
!!! TTTTGACTTGGTGCAATTTT+AGG - chr6.3:49614556-49614575 None:intergenic 30.0%
AAATGGATAATTACCGGAAG+AGG + chr6.3:49611478-49611497 MS.gene84803:intron 35.0%
AATGGATAATTACCGGAAGA+GGG + chr6.3:49611479-49611498 MS.gene84803:intron 35.0%
ACACTTAGGGTAATGTTAAC+CGG - chr6.3:49611295-49611314 None:intergenic 35.0%
ACCTTGAATTCCCACATTAA+TGG + chr6.3:49613868-49613887 MS.gene84803:CDS 35.0%
ATCATTTATCTACCCTCTTC+CGG - chr6.3:49611494-49611513 None:intergenic 35.0%
ATTGAAGGGAACATTAGTGA+TGG + chr6.3:49614903-49614922 MS.gene84803:CDS 35.0%
CCTTGAATTCCCACATTAAT+GGG + chr6.3:49613869-49613888 MS.gene84803:CDS 35.0%
GCATTACGCTGCATAAAAAT+TGG + chr6.3:49612219-49612238 MS.gene84803:intron 35.0%
GTCAGTTTCAATTGCTTGTA+CGG - chr6.3:49611093-49611112 None:intergenic 35.0%
GTGCCAATGTCATATGATAT+TGG + chr6.3:49611532-49611551 MS.gene84803:intron 35.0%
GTGTGTAAATTGTATGGATG+TGG + chr6.3:49613633-49613652 MS.gene84803:intron 35.0%
GTGTGTGTGTGTAAATTGTA+TGG + chr6.3:49613627-49613646 MS.gene84803:intron 35.0%
TAATGTTATGCTTCCAAGTG+AGG + chr6.3:49614008-49614027 MS.gene84803:intron 35.0%
TCCTATGTAAGTTCTTGATC+TGG + chr6.3:49610957-49610976 MS.gene84803:intron 35.0%
TGAATGAATCCTTACTTGCT+TGG - chr6.3:49613489-49613508 None:intergenic 35.0%
TGACTCATATGCTGAAACTA+AGG + chr6.3:49611109-49611128 MS.gene84803:CDS 35.0%
TGATAGCACTTGTGTAATTG+AGG + chr6.3:49611510-49611529 MS.gene84803:intron 35.0%
TGGCCAATATCATATGACAT+TGG - chr6.3:49611538-49611557 None:intergenic 35.0%
TTCTACCTTTCTTAGTCTCA+TGG + chr6.3:49612500-49612519 MS.gene84803:intron 35.0%
TTCTTCATGGTTTCTCATAC+TGG + chr6.3:49610767-49610786 MS.gene84803:CDS 35.0%
TTGACTCATAGAAGAACTAG+TGG - chr6.3:49612480-49612499 None:intergenic 35.0%
! ATGATCGTTAGCTTAGTGTA+CGG - chr6.3:49611979-49611998 None:intergenic 35.0%
! ATTTAGAGTACTAACGAGAG+AGG + chr6.3:49612527-49612546 MS.gene84803:intron 35.0%
! CTCTCTCTCTTTTATAAGGA+TGG - chr6.3:49611612-49611631 None:intergenic 35.0%
! GGTTCACTTGTTAAAATTGG+CGG + chr6.3:49611422-49611441 MS.gene84803:intron 35.0%
! TAAATAGCTTCTGGAAGAAG+TGG + chr6.3:49612091-49612110 MS.gene84803:CDS 35.0%
! TTTAGAGTACTAACGAGAGA+GGG + chr6.3:49612528-49612547 MS.gene84803:intron 35.0%
!! AGTTTTGATAACCATAGCGT+AGG + chr6.3:49614088-49614107 MS.gene84803:intron 35.0%
!! GGGTGTTTTTACATCTACAT+CGG + chr6.3:49612301-49612320 MS.gene84803:intron 35.0%
AAGACTCCAAACAGAGAACA+AGG + chr6.3:49613397-49613416 MS.gene84803:CDS 40.0%
AAGTGCTACCCGTAGATAAA+TGG + chr6.3:49611699-49611718 MS.gene84803:intron 40.0%
AAGTTCTTGATCTGGCTGTT+TGG + chr6.3:49610965-49610984 MS.gene84803:intron 40.0%
ACCTGATGTCAAGTTCAATC+AGG - chr6.3:49611945-49611964 None:intergenic 40.0%
ACCTGATTGAACTTGACATC+AGG + chr6.3:49611941-49611960 MS.gene84803:intron 40.0%
ACCTTAATGGAAGGAAACAC+AGG + chr6.3:49613120-49613139 MS.gene84803:CDS 40.0%
ACCTTGAATTCCCACCTTAA+AGG + chr6.3:49614718-49614737 MS.gene84803:CDS 40.0%
ACTGGTTAAGGAGTCAAATG+TGG - chr6.3:49611260-49611279 None:intergenic 40.0%
AGAACCTTTCAGAACCCTTT+AGG + chr6.3:49613953-49613972 MS.gene84803:CDS 40.0%
AGACTCCAAACAGAGAACAA+GGG + chr6.3:49613398-49613417 MS.gene84803:CDS 40.0%
AGAGAAACTCATTGCTAGCA+AGG + chr6.3:49612182-49612201 MS.gene84803:CDS 40.0%
AGCAAAATGTACCTACGCTA+TGG - chr6.3:49614102-49614121 None:intergenic 40.0%
ATCAATAGCCTCCACATACT+CGG - chr6.3:49613426-49613445 None:intergenic 40.0%
ATCAGTTGTCACATTGTGGT+CGG + chr6.3:49611640-49611659 MS.gene84803:intron 40.0%
ATTAGCTCCACTCCTAACAT+TGG - chr6.3:49614869-49614888 None:intergenic 40.0%
CCCATTAATGTGGGAATTCA+AGG - chr6.3:49613872-49613891 None:intergenic 40.0%
CCTTAATGGAAGGAAACACA+GGG + chr6.3:49613121-49613140 MS.gene84803:CDS 40.0%
CCTTGAATTCCCACCTTAAA+GGG + chr6.3:49614719-49614738 MS.gene84803:CDS 40.0%
CTAAGCTAACGATCATCTTC+TGG + chr6.3:49611983-49612002 MS.gene84803:CDS 40.0%
CTCAAAATAGAAATCCCCCA+AGG + chr6.3:49612672-49612691 MS.gene84803:intron 40.0%
GAACATCTATCAGTCCAAAG+AGG + chr6.3:49614807-49614826 MS.gene84803:CDS 40.0%
GACTTGATTTCCCACCTTAA+TGG + chr6.3:49613107-49613126 MS.gene84803:CDS 40.0%
GAGCTTCTTGTGCAGAAAAA+TGG + chr6.3:49613371-49613390 MS.gene84803:intron 40.0%
GATTCCTTCGGTTTCTACTA+TGG - chr6.3:49613734-49613753 None:intergenic 40.0%
GCCAGATCAAGAACTTACAT+AGG - chr6.3:49610961-49610980 None:intergenic 40.0%
GCTAGCAATGAGTTTCTCTA+AGG - chr6.3:49612181-49612200 None:intergenic 40.0%
GGAAATCAGTTGTCACATTG+TGG + chr6.3:49611636-49611655 MS.gene84803:intron 40.0%
GTACTCTAAATGTCACCATG+AGG - chr6.3:49612518-49612537 None:intergenic 40.0%
GTGGACTTGTGCTATATGTT+TGG + chr6.3:49613064-49613083 MS.gene84803:CDS 40.0%
GTGGACTTGTGCTTTATGTT+TGG + chr6.3:49613825-49613844 MS.gene84803:CDS 40.0%
GTGTCTATGTCTCTCGTAAA+TGG + chr6.3:49611461-49611480 MS.gene84803:intron 40.0%
GTGTTTCCTCCCATTAATGT+GGG - chr6.3:49613881-49613900 None:intergenic 40.0%
GTGTTTCCTTCCATTAAGGT+GGG - chr6.3:49613120-49613139 None:intergenic 40.0%
TCAACCATAGTAGAAACCGA+AGG + chr6.3:49613727-49613746 MS.gene84803:CDS 40.0%
TCTTAAGAGTTCTACGCAGA+AGG + chr6.3:49614639-49614658 MS.gene84803:CDS 40.0%
TGAATTCCCACATTAATGGG+AGG + chr6.3:49613872-49613891 MS.gene84803:CDS 40.0%
TGACAGGAATATCCTGCAAA+TGG - chr6.3:49614531-49614550 None:intergenic 40.0%
TGATTTCCCACCTTAATGGA+AGG + chr6.3:49613111-49613130 MS.gene84803:CDS 40.0%
TGCGTATATTTGGATGTTGC+AGG + chr6.3:49612926-49612945 MS.gene84803:intron 40.0%
TGTCACCATGAGACTAAGAA+AGG - chr6.3:49612508-49612527 None:intergenic 40.0%
TGTGGGAATTCAAGGTTATC+TGG - chr6.3:49613864-49613883 None:intergenic 40.0%
TGTGTTTCCTCCCATTAATG+TGG - chr6.3:49613882-49613901 None:intergenic 40.0%
TGTGTTTCCTTCCATTAAGG+TGG - chr6.3:49613121-49613140 None:intergenic 40.0%
TTAGCTCCACTCCTAACATT+GGG - chr6.3:49614868-49614887 None:intergenic 40.0%
TTCAATCCCAATGTTAGGAG+TGG + chr6.3:49614859-49614878 MS.gene84803:CDS 40.0%
TTGGAGTACAAACCCAACAT+AGG + chr6.3:49612238-49612257 MS.gene84803:intron 40.0%
TTGTGCAGACAAATGGAGAA+AGG + chr6.3:49612554-49612573 MS.gene84803:intron 40.0%
! GAATGACACGTGTCACATTT+TGG - chr6.3:49611562-49611581 None:intergenic 40.0%
! TCATTTGTCACTTCTGCATC+AGG - chr6.3:49612377-49612396 None:intergenic 40.0%
! TGAATGAGGCATTACTTGCT+TGG - chr6.3:49612644-49612663 None:intergenic 40.0%
!! TCAACCTAAAGGGTTCTGAA+AGG - chr6.3:49613960-49613979 None:intergenic 40.0%
!! TGCGATTATGGTTTTTGGAC+AGG + chr6.3:49611060-49611079 MS.gene84803:intron 40.0%
!! TTATGTATTGGTGGCGTGTT+TGG + chr6.3:49611325-49611344 MS.gene84803:intron 40.0%
!!! GCTGATGATGCATTTTGACT+TGG - chr6.3:49614568-49614587 None:intergenic 40.0%
AAACCGCAAATAGTCAGCTG+GGG + chr6.3:49612066-49612085 MS.gene84803:CDS 45.0%
AAATGCATCATCAGCCACAG+TGG + chr6.3:49614573-49614592 MS.gene84803:CDS 45.0%
ACACACAAATACAGGACGTG+TGG - chr6.3:49614488-49614507 None:intergenic 45.0%
ACCTTAAAGGGAGGAAACAC+AGG + chr6.3:49614731-49614750 MS.gene84803:CDS 45.0%
AGGGTCTTTGTGCAGACAAA+TGG + chr6.3:49612547-49612566 MS.gene84803:intron 45.0%
ATCCTTACTTGCTTGGTTGC+AGG - chr6.3:49613482-49613501 None:intergenic 45.0%
CAAGAGGCCTAGAAAAGAGA+AGG - chr6.3:49610924-49610943 None:intergenic 45.0%
CACACAAATACAGGACGTGT+GGG - chr6.3:49614487-49614506 None:intergenic 45.0%
CATCTATCAGTCCAAAGAGG+AGG + chr6.3:49614810-49614829 MS.gene84803:CDS 45.0%
CCCTGTGTTTCCTTCCATTA+AGG - chr6.3:49613124-49613143 None:intergenic 45.0%
CCTGTCAAAGTGGAAACCAA+AGG + chr6.3:49612972-49612991 MS.gene84803:CDS 45.0%
CCTTAAAGGGAGGAAACACA+GGG + chr6.3:49614732-49614751 MS.gene84803:CDS 45.0%
CTAAATGTCACCATGAGGCT+GGG - chr6.3:49613337-49613356 None:intergenic 45.0%
GAAACCGCAAATAGTCAGCT+GGG + chr6.3:49612065-49612084 MS.gene84803:CDS 45.0%
GATGCCATATACTCCTCACT+TGG - chr6.3:49614024-49614043 None:intergenic 45.0%
GCGAAATAACATTGTCACCG+TGG - chr6.3:49611777-49611796 None:intergenic 45.0%
GCTGACTATTTGCGGTTTCA+TGG - chr6.3:49612064-49612083 None:intergenic 45.0%
GGAATTTCTTGCTTGGTTGC+AGG - chr6.3:49613461-49613480 None:intergenic 45.0%
GGTTGCAGGAATTTCTTGCT+TGG - chr6.3:49613468-49613487 None:intergenic 45.0%
GTAGAAACCGAAGGAATCGA+TGG + chr6.3:49613736-49613755 MS.gene84803:CDS 45.0%
GTAGCACTTGTGAGACATTG+TGG - chr6.3:49611688-49611707 None:intergenic 45.0%
GTCCAAATGCCATGTGACAT+TGG - chr6.3:49611666-49611685 None:intergenic 45.0%
TAAGAAGCTCGTCCAAAGTC+CGG - chr6.3:49612018-49612037 None:intergenic 45.0%
TCTAAATGTCACCATGAGGC+TGG - chr6.3:49613338-49613357 None:intergenic 45.0%
TGAAACCGCAAATAGTCAGC+TGG + chr6.3:49612064-49612083 MS.gene84803:CDS 45.0%
TGAATTCCCACCTTAAAGGG+AGG + chr6.3:49614722-49614741 MS.gene84803:CDS 45.0%
TGGCATCTCACATAAATGGG+TGG + chr6.3:49614037-49614056 MS.gene84803:intron 45.0%
TGTTCCTTTCGTTTCCACTG+TGG - chr6.3:49614590-49614609 None:intergenic 45.0%
TTCACTCTCTGCTGTTCCTT+TGG - chr6.3:49612991-49613010 None:intergenic 45.0%
TTCCTGCAACCAAGCAAGTA+AGG + chr6.3:49612632-49612651 MS.gene84803:intron 45.0%
TTGACATCAGGTTTCAGCTC+TGG + chr6.3:49611953-49611972 MS.gene84803:intron 45.0%
! AGAAGGAAGTGCAGAAAGAG+TGG + chr6.3:49613806-49613825 MS.gene84803:CDS 45.0%
! CCTTTGGTTTCCACTTTGAC+AGG - chr6.3:49612975-49612994 None:intergenic 45.0%
! CTGAGTTGAGGCATGCTAAA+AGG + chr6.3:49613559-49613578 MS.gene84803:intron 45.0%
! CTTCTGTTTCTCCTCCTCTT+TGG - chr6.3:49614824-49614843 None:intergenic 45.0%
! CTTTTAGCATGCCTCAACTC+AGG - chr6.3:49613561-49613580 None:intergenic 45.0%
! GCTTCCAAGTGAGGAGTATA+TGG + chr6.3:49614017-49614036 MS.gene84803:intron 45.0%
! TGCATCCTTTTGCTTCTGCT+GGG - chr6.3:49613183-49613202 None:intergenic 45.0%
! TGTGTTTCCTCCCTTTAAGG+TGG - chr6.3:49614732-49614751 None:intergenic 45.0%
!! CATCTTCTGGCTCATCATAC+CGG + chr6.3:49611996-49612015 MS.gene84803:CDS 45.0%
!! CCCTTTAAGGTGGGAATTCA+AGG - chr6.3:49614722-49614741 None:intergenic 45.0%
!! GACACGTGTCACATTTTGGT+TGG - chr6.3:49611558-49611577 None:intergenic 45.0%
!! GGTGCAATTTTAGGTGTGAC+AGG - chr6.3:49614547-49614566 None:intergenic 45.0%
!! GGTTCTGAAAGGTTCTTCTG+CGG - chr6.3:49613949-49613968 None:intergenic 45.0%
!! GTGTTTCCTCCCTTTAAGGT+GGG - chr6.3:49614731-49614750 None:intergenic 45.0%
!! TGGGTTGATTCCTGTCAAAG+TGG + chr6.3:49612962-49612981 MS.gene84803:CDS 45.0%
AACCCCCAGCTGACTATTTG+CGG - chr6.3:49612072-49612091 None:intergenic 50.0%
AACCGCAAATAGTCAGCTGG+GGG + chr6.3:49612067-49612086 MS.gene84803:CDS 50.0%
ACAGCAGAGAGTGAAAGAGC+TGG + chr6.3:49612996-49613015 MS.gene84803:CDS 50.0%
ACCTACCCAGCAGAAGCAAA+AGG + chr6.3:49613175-49613194 MS.gene84803:CDS 50.0%
ATGTTCACCTTCTGCGAAGC+AGG - chr6.3:49614793-49614812 None:intergenic 50.0%
CCCTGTGTTTCCTCCCTTTA+AGG - chr6.3:49614735-49614754 None:intergenic 50.0%
CCTCGGAGTTCTACACAGAA+GGG + chr6.3:49613029-49613048 MS.gene84803:CDS 50.0%
CTGCACTTCCTTCTGTGTAG+CGG - chr6.3:49613800-49613819 None:intergenic 50.0%
GAGTTCTACCGCTACACAGA+AGG + chr6.3:49613789-49613808 MS.gene84803:CDS 50.0%
GCTGGGGGTTAAATAGCTTC+TGG + chr6.3:49612082-49612101 MS.gene84803:CDS 50.0%
GGATACACCAGAGCAACAAG+AGG - chr6.3:49610940-49610959 None:intergenic 50.0%
GGCATTACTTGCTTGGTTGC+AGG - chr6.3:49612637-49612656 None:intergenic 50.0%
GGCCAATGTCACATGGCATT+TGG + chr6.3:49611661-49611680 MS.gene84803:intron 50.0%
GTGGACTTGTGCTTTGTGCT+CGG + chr6.3:49614675-49614694 MS.gene84803:CDS 50.0%
TCAGCCACAGTGGAAACGAA+AGG + chr6.3:49614583-49614602 MS.gene84803:CDS 50.0%
TCCTCGGAGTTCTACACAGA+AGG + chr6.3:49613028-49613047 MS.gene84803:CDS 50.0%
TGGCTCATCATACCGGACTT+TGG + chr6.3:49612003-49612022 MS.gene84803:CDS 50.0%
TGTGTAGCGGTAGAACTCTG+AGG - chr6.3:49613787-49613806 None:intergenic 50.0%
TTCTAGGCCTCTTGTTGCTC+TGG + chr6.3:49610930-49610949 MS.gene84803:intron 50.0%
! CTGCATCCTTTTGCTTCTGC+TGG - chr6.3:49613184-49613203 None:intergenic 50.0%
! TCCTTTTGCTTCTGCTGGGT+AGG - chr6.3:49613179-49613198 None:intergenic 50.0%
!! GTCACTGCCATCGATTCCTT+CGG - chr6.3:49613746-49613765 None:intergenic 50.0%
CCCTTCTGTGTAGAACTCCG+AGG - chr6.3:49613032-49613051 None:intergenic 55.0%
CGGTGCCCTTGTTCTCTGTT+TGG - chr6.3:49613406-49613425 None:intergenic 55.0%
GAAAGGTTCTTCTGCGGAGC+AGG - chr6.3:49613943-49613962 None:intergenic 55.0%
GAAGCAACCTGCTTCGCAGA+AGG + chr6.3:49614783-49614802 MS.gene84803:CDS 55.0%
GAGCTGGTGGAGAAGTTCCT+CGG + chr6.3:49613012-49613031 MS.gene84803:CDS 55.0%
GCAGAGAGTGAAAGAGCTGG+TGG + chr6.3:49612999-49613018 MS.gene84803:CDS 55.0%
GTAATGTTAACCGGTGCCCC+CGG - chr6.3:49611286-49611305 None:intergenic 55.0%
TAATGTTAACCGGTGCCCCC+GGG - chr6.3:49611285-49611304 None:intergenic 55.0%
TGACTCCTTAACCAGTGCCC+CGG + chr6.3:49611264-49611283 MS.gene84803:intron 55.0%
TGTGGTCGGCCAATGTCACA+TGG + chr6.3:49611654-49611673 MS.gene84803:intron 55.0%
! AGAAGGGAGTGCAGAGAGAG+TGG + chr6.3:49613045-49613064 MS.gene84803:CDS 55.0%
!! GAACAAGGGCACCGAGTATG+TGG + chr6.3:49613412-49613431 MS.gene84803:CDS 55.0%
AATGTTAACCGGTGCCCCCG+GGG - chr6.3:49611284-49611303 None:intergenic 60.0%
ACTCCTTAACCAGTGCCCCG+GGG + chr6.3:49611266-49611285 MS.gene84803:intron 60.0%
ATCGATGGCAGTGACGCAGC+TGG + chr6.3:49613751-49613770 MS.gene84803:CDS 60.0%
GACTCCTTAACCAGTGCCCC+GGG + chr6.3:49611265-49611284 MS.gene84803:intron 60.0%
GAGGCTGGGACGTGCAGAAT+TGG - chr6.3:49613323-49613342 None:intergenic 60.0%
TTCTGCACGTCCCAGCCTCA+TGG + chr6.3:49613324-49613343 MS.gene84803:intron 60.0%
!! CAAGGGCACCGAGTATGTGG+AGG + chr6.3:49613415-49613434 MS.gene84803:CDS 60.0%
CAGTGACGCAGCTGGTGGAG+AGG + chr6.3:49613759-49613778 MS.gene84803:CDS 65.0%
CTCCTTAACCAGTGCCCCGG+GGG + chr6.3:49611267-49611286 MS.gene84803:intron 65.0%
GATGGCAGTGACGCAGCTGG+TGG + chr6.3:49613754-49613773 MS.gene84803:CDS 65.0%
!! TGCCCCCGGGGCACTGGTTA+AGG - chr6.3:49611272-49611291 None:intergenic 70.0%
! AACCAGTGCCCCGGGGGCAC+CGG + chr6.3:49611273-49611292 MS.gene84803:intron 75.0%
! AACCGGTGCCCCCGGGGCAC+TGG - chr6.3:49611278-49611297 None:intergenic 80.0%


Chromosome Type Strat End Strand Name
chr6.3 gene 49610762 49614957 49610762 ID=MS.gene84803
chr6.3 mRNA 49610762 49614957 49610762 ID=MS.gene84803.t1;Parent=MS.gene84803
chr6.3 exon 49610762 49610817 49610762 ID=MS.gene84803.t1.exon1;Parent=MS.gene84803.t1
chr6.3 CDS 49610762 49610817 49610762 ID=cds.MS.gene84803.t1;Parent=MS.gene84803.t1
chr6.3 exon 49610936 49610962 49610936 ID=MS.gene84803.t1.exon2;Parent=MS.gene84803.t1
chr6.3 CDS 49610936 49610962 49610936 ID=cds.MS.gene84803.t1;Parent=MS.gene84803.t1
chr6.3 exon 49611082 49611204 49611082 ID=MS.gene84803.t1.exon3;Parent=MS.gene84803.t1
chr6.3 CDS 49611082 49611204 49611082 ID=cds.MS.gene84803.t1;Parent=MS.gene84803.t1
chr6.3 exon 49611963 49612203 49611963 ID=MS.gene84803.t1.exon4;Parent=MS.gene84803.t1
chr6.3 CDS 49611963 49612203 49611963 ID=cds.MS.gene84803.t1;Parent=MS.gene84803.t1
chr6.3 exon 49612359 49612430 49612359 ID=MS.gene84803.t1.exon5;Parent=MS.gene84803.t1
chr6.3 CDS 49612359 49612430 49612359 ID=cds.MS.gene84803.t1;Parent=MS.gene84803.t1
chr6.3 exon 49612562 49612648 49612562 ID=MS.gene84803.t1.exon6;Parent=MS.gene84803.t1
chr6.3 CDS 49612562 49612648 49612562 ID=cds.MS.gene84803.t1;Parent=MS.gene84803.t1
chr6.3 exon 49612948 49613253 49612948 ID=MS.gene84803.t1.exon7;Parent=MS.gene84803.t1
chr6.3 CDS 49612948 49613253 49612948 ID=cds.MS.gene84803.t1;Parent=MS.gene84803.t1
chr6.3 exon 49613386 49613493 49613386 ID=MS.gene84803.t1.exon8;Parent=MS.gene84803.t1
chr6.3 CDS 49613386 49613493 49613386 ID=cds.MS.gene84803.t1;Parent=MS.gene84803.t1
chr6.3 exon 49613688 49614002 49613688 ID=MS.gene84803.t1.exon9;Parent=MS.gene84803.t1
chr6.3 CDS 49613688 49614002 49613688 ID=cds.MS.gene84803.t1;Parent=MS.gene84803.t1
chr6.3 exon 49614538 49614957 49614538 ID=MS.gene84803.t1.exon10;Parent=MS.gene84803.t1
chr6.3 CDS 49614538 49614957 49614538 ID=cds.MS.gene84803.t1;Parent=MS.gene84803.t1
Gene Sequence

>MS.gene84803

ATGGCTTCTTCATGGTTTCTCATACTGGCTTTCAAATGCTTTTATCATTTTGCATGGTATGAAAATGTATTACGTATATCCCTCCTTTATTTTCTTCATCTTTCTCATTTTTTTAACATTATTAGTTGCATGCTGATCAATAGTACCCTTCTTTATTTTCCTTCTCTTTTCTAGGCCTCTTGTTGCTCTGGTGTATCCTATGTAAGTTCTTGATCTGGCTGTTTGGTCTATTGAAATAGTTGCTACCTTTTACATTATTGTTTTGACATTTTGTTTTGTTATGCTCTTTTTTGTTTTTTGCGATTATGGTTTTTGGACAGGTGTGCTTCCGTACAAGCAATTGAAACTGACTCATATGCTGAAACTAAGGATTTGATCTCATATTGGATACTTCTTTCCTTAATTTACCTCTTTGAATATGCTTTTATGAACCTTCTTCTATGGTAAATTCTTTTATGAACTCTTTGAATATACTTCTTTCCAATGTAATACTTACCACATTTGACTCCTTAACCAGTGCCCCGGGGGCACCGGTTAACATTACCCTAAGTGTAATAGTGCATTTATGTATTGGTGGCGTGTTTGGCGAATTTGTTCTATTTATTTACCCTCCATCTATTGATCATTTATGAAAGAGATAAACATAAGTGAAAGAACTAAGGTTCACTTGTTAAAATTGGCGGCACTGATCTATCACTTGTGTCTATGTCTCTCGTAAATGGATAATTACCGGAAGAGGGTAGATAAATGATAGCACTTGTGTAATTGAGGTGCCAATGTCATATGATATTGGCCAACCAAAATGTGACACGTGTCATTCTTTCCTTAAAAAATAACAAAAAGCAAACCATCCTTATAAAAGAGAGAGAGAGTAGGAAATCAGTTGTCACATTGTGGTCGGCCAATGTCACATGGCATTTGGACCACAATGTCTCACAAGTGCTACCCGTAGATAAATGGAGTAAATCTGAACTTGATTTTATTGAACCTACTTATTTATTACTTGCTAAAGCCACGGTGACAATGTTATTTCGCCAAATTAACCGGCAATATTTCTATGAATCATCCAAGTTCGTTTTTTTACTCTGAGAATGAGTACCTGATTGAACTTGATCTTAATCAATGCACATTTAATGTGCTAAATTTTTAGTAGAGATTAAGGCATGAAATCCTTTTAGTACCTGATTGAACTTGACATCAGGTTTCAGCTCTGGCCGTACACTAAGCTAACGATCATCTTCTGGCTCATCATACCGGACTTTGGACGAGCTTCTTATGTTTATAATAAGCTTATTCACTCCATGAAACCGCAAATAGTCAGCTGGGGGTTAAATAGCTTCTGGAAGAAGTGGTTTTTTGAGAAAGATAACTTTTTAATGCATGCAGAGAGATATATGAAAGAGAATGGAACTGAAGCCTTAGAGAAACTCATTGCTAGCAAGGTAAACAGCTATGTTGCATTACGCTGCATAAAAATTGGAGTACAAACCCAACATAGGATAAAAATGTCAAACTACTACAACTCTAGAAAAATTATGTGGGTGTTTTTACATCTACATCGGCAGTTGAAAATTTTAGCTAATTTATCATATTGTAGAACACAATGTGTAGGCCTGATGCAGAAGTGACAAATGAAATTTCAGCTACTGATGATAAAGAAATGTTAAAGGTAAAGTTTTGATGTTAAGTCATTTGTGAAATTAATATAGTTCTTGCCACTAGTTCTTCTATGAGTCAATTCTACCTTTCTTAGTCTCATGGTGACATTTAGAGTACTAACGAGAGAGGGTCTTTGTGCAGACAAATGGAGAAAGGCTCCAAACAGAGCAAAAAGATATCAAAGGTTTGGAAGCTATTGACAAAAAAGAAATTCCTGCAACCAAGCAAGTAATGCCTCATTCATATATTCACTCAAAATAGAAATCCCCCAAGGACAAATTAAAGTTTTAGACTTGTGACATGCTAAGACGTCATTTGTGAAATGTTTAGGCTTTTAAGAACAGTTAATGATATCACACTTGTTTGAAGTATAGATATTCAGATTGAATTATCTTCTCCCTTTGTATGCATGAGTAATAATAACCATAGATATATGTTGAAAATGTTCGAAAATGTTTATTCTTCCAATTATATTGGGTTGTTTGTATGAAGTACTTAGTCTCTATGCGTATATTTGGATGTTGCAGGATATAATTTTTTTTGGGTTGATTCCTGTCAAAGTGGAAACCAAAGGAACAGCAGAGAGTGAAAGAGCTGGTGGAGAAGTTCCTCGGAGTTCTACACAGAAGGGAGTGCAGAGAGAGTGGACTTGTGCTATATGTTTGGTAACAACATCGCGTGAGAAAGACTTGATTTCCCACCTTAATGGAAGGAAACACAGGGTTGCTAGTGAAGCTTTAATAGCGAAGAAGCAACCTACCCAGCAGAAGCAAAAGGATGCAGAAGCGACAACAAATAAAACCATAGCTACTGATAATAAAAAAATACCCAAGGTAAAGTTTTGATGTGAAGTGTTGTGAAATTAATATACATTTCTTGCTACAAGTTCTTGTATGAGTCCAATTCTGCACGTCCCAGCCTCATGGTGACATTTAGAGTACTTAATGAGAGAGCTTCTTGTGCAGAAAAATGGAGAAAGACTCCAAACAGAGAACAAGGGCACCGAGTATGTGGAGGCTATTGATAAAAAAGAAATTCCTGCAACCAAGCAAGAAATTCCTGCAACCAAGCAAGTAAGGATTCATTCATATATCCGTTTAAAATAGAAATCTTCCAAGGACAAATTAAAATTTTAGACCTGAGTTGAGGCATGCTAAAAGGTCATTTGTGAAAGTTTTAGGCATACAAGTGCGCACGCGCGAGTGTGTGTGTGTGTGTAAATTGTATGGATGTGGTCATGATTTTGTTGAATTGTTGTTGGTACTAGAGAATGTATGCTAATATTGTTGCAAGTCAAAAAGCATCATCAACCATAGTAGAAACCGAAGGAATCGATGGCAGTGACGCAGCTGGTGGAGAGGTTCCTCAGAGTTCTACCGCTACACAGAAGGAAGTGCAGAAAGAGTGGACTTGTGCTTTATGTTTGGTAACAACTTCGAGCCAGATAACCTTGAATTCCCACATTAATGGGAGGAAACACAGAGCTGCTTGTGAAGCAGCTTTGAAAGCAAAGAAGCAACCTGCTCCGCAGAAGAACCTTTCAGAACCCTTTAGGTTGATTAATTCCAAATTAATATGTAAAGTCTGTAATGTTATGCTTCCAAGTGAGGAGTATATGGCATCTCACATAAATGGGTGGCAGCACTTGTCTAAAATTCAAAGTTGGTAGTTTTGATAACCATAGCGTAGGTACATTTTGCTTGAAAGTTGAAAAGCAAATTGGGGTAGCAAAGCTTGTTGACTGATATTAAGTGTACCAAAACATTGCTGATTCTTAAATGGAAACTGCTTTATTAGTTTGAGTATTGCTATTTGGTTTGACAAATAATTATAACAAAAGGCAAGAATCACTTCGTGTAAATATTTTAAGGAGTCAACAAACTCTTAATTTGCTATTTTGCAGAAAACAGGTATAGACCAATCTTGCGTGTTTGTATTAACACATGTAATTGTTCTTCATTACAAATACCATTCTCCTATTAGTTTTGATAGCATTTGCATAAATCAACGTGAAGAGTTTCTTTGAAATTTTATCCAATTACATATATGACTTACTATTTTTACCCACACGTCCTGTATTTGTGTGTATATATTGATCCAATTTTTACCATTTGCAGGATATTCCTGTCACACCTAAAATTGCACCAAGTCAAAATGCATCATCAGCCACAGTGGAAACGAAAGGAACAGCAAAGAGTGACAAATCTGATGAAGAGAATCTTAAGAGTTCTACGCAGAAGGAAGTGCAGAAAGAGTGGACTTGTGCTTTGTGCTCGGTAACAACATCGAGCAAGATAACCTTGAATTCCCACCTTAAAGGGAGGAAACACAGGGCTAGTTGTGATGCTGCTTTGAAAGCAAAGAAGCAACCTGCTTCGCAGAAGGTGAACATCTATCAGTCCAAAGAGGAGGAGAAACAGAAGAATGTTAGCAATAAGTTCAATCCCAATGTTAGGAGTGGAGCTAATATTCTTAAGAAAGGATTGAAGGGAACATTAGTGATGGATGATAAGGGACGCATAATGTACAGTCTGTGA

Protein sequence

>MS.gene84803.t1

MASSWFLILAFKCFYHFAWPLVALVYPMCASVQAIETDSYAETKDLISYWILLSLIYLFEYAFMNLLLWFQLWPYTKLTIIFWLIIPDFGRASYVYNKLIHSMKPQIVSWGLNSFWKKWFFEKDNFLMHAERYMKENGTEALEKLIASKNTMCRPDAEVTNEISATDDKEMLKTNGERLQTEQKDIKGLEAIDKKEIPATKQDIIFFGLIPVKVETKGTAESERAGGEVPRSSTQKGVQREWTCAICLVTTSREKDLISHLNGRKHRVASEALIAKKQPTQQKQKDAEATTNKTIATDNKKIPKKNGERLQTENKGTEYVEAIDKKEIPATKQEIPATKQRMYANIVASQKASSTIVETEGIDGSDAAGGEVPQSSTATQKEVQKEWTCALCLVTTSSQITLNSHINGRKHRAACEAALKAKKQPAPQKNLSEPFRLINSKLICKDIPVTPKIAPSQNASSATVETKGTAKSDKSDEENLKSSTQKEVQKEWTCALCSVTTSSKITLNSHLKGRKHRASCDAALKAKKQPASQKVNIYQSKEEEKQKNVSNKFNPNVRSGANILKKGLKGTLVMDDKGRIMYSL