AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0180005672.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180005672.01.T01 MTR_1g105545 96.094 384 13 1 1 384 1 382 0.0 755
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180005672.01.T01 AT4G21210 60.358 391 127 6 18 384 17 403 7.20e-162 460
MsG0180005672.01.T01 AT3G01200 61.944 360 132 3 28 384 20 377 7.32e-149 426
MsG0180005672.01.T01 AT4G21210 56.010 391 117 7 18 384 17 376 8.72e-142 408

Find 124 sgRNAs with CRISPR-Local

Find 201 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAGCATCTCAAAACGCTATT+AGG 0.180944 1:+94795117 MsG0180005672.01.T01:CDS
CTGAGAAGGCCTGCAAATTA+TGG 0.189713 1:+94794365 MsG0180005672.01.T01:CDS
AATGCCTAGGACTCTCTTTC+AGG 0.211691 1:+94794687 MsG0180005672.01.T01:CDS
ATTCTACCTTATATATATTA+TGG 0.226665 1:+94795291 MsG0180005672.01.T01:three_prime_UTR
AACTTTGATGCTTTACAATA+TGG 0.236909 1:-94795165 None:intergenic
AAGGCTGATATTGTTCTTAC+TGG 0.242253 1:+94794574 MsG0180005672.01.T01:CDS
AACCCTGTCTGGCCCGTTAT+TGG 0.259050 1:+94794877 MsG0180005672.01.T01:CDS
TGATGATGTAGAGAGGTTAT+TGG 0.259176 1:+94794267 MsG0180005672.01.T01:CDS
GGCCTTCCTCGTGGTGCTTC+TGG 0.260040 1:+94794460 MsG0180005672.01.T01:CDS
CCCTGGACCACCGGTTCAGC+TGG 0.278178 1:-94793033 None:intergenic
CATCTGGGTGTGTCTCCTTC+TGG 0.288506 1:+94794439 MsG0180005672.01.T01:CDS
AGAGGCCATTGCTTCTCATC+TGG 0.294994 1:+94794423 MsG0180005672.01.T01:CDS
TTTGGACATAATCGTGAAAT+TGG 0.309134 1:-94792914 None:intergenic
AATACGTGCCGGTCGAAAAT+TGG 0.320881 1:+94793063 MsG0180005672.01.T01:CDS
CGAGAGGAACTTGAATTTGC+CGG 0.326023 1:+94794838 MsG0180005672.01.T01:CDS
TGGAGAGTTGTTGGATTCTA+TGG 0.333606 1:-94793110 None:intergenic
AGTTGTTGGATTCTATGGTC+TGG 0.342902 1:-94793105 None:intergenic
CCCAGCTGAACCGGTGGTCC+AGG 0.354359 1:+94793032 MsG0180005672.01.T01:CDS
CACTGTGTTAATGCCGCTTT+GGG 0.361096 1:+94793244 MsG0180005672.01.T01:CDS
CTTACTGGGGTTTCCCGAAC+CGG 0.364985 1:+94794589 MsG0180005672.01.T01:CDS
TTCAGCTGGGGACTCACCTT+GGG 0.380039 1:-94793019 None:intergenic
GTTGTTGGATTCTATGGTCT+GGG 0.380440 1:-94793104 None:intergenic
TCTTGCTCAGAAAGGGTATA+AGG 0.382605 1:+94794633 MsG0180005672.01.T01:CDS
AAAACAAGGGCTAAAACTTT+GGG 0.383297 1:+94794769 MsG0180005672.01.T01:CDS
TGAGAAGGCCTGCAAATTAT+GGG 0.385262 1:+94794366 MsG0180005672.01.T01:CDS
GATGGTCCATAATATATATA+AGG 0.386805 1:-94795297 None:intergenic
AGGTGAGTCCCCAGCTGAAC+CGG 0.390015 1:+94793023 MsG0180005672.01.T01:CDS
AGGCTGATATTGTTCTTACT+GGG 0.391297 1:+94794575 MsG0180005672.01.T01:CDS
AGCATCTCAAAACGCTATTA+GGG 0.392814 1:+94795118 MsG0180005672.01.T01:CDS
AGAATCACGGACTAATTATT+CGG 0.396684 1:+94794801 MsG0180005672.01.T01:CDS
ACAGGATCCAAGTCAGTTAC+AGG 0.401887 1:+94792992 MsG0180005672.01.T01:CDS
TTTAGTATAGTTACCAATAA+CGG 0.402794 1:-94794890 None:intergenic
ACACTGTGTTAATGCCGCTT+TGG 0.405363 1:+94793243 MsG0180005672.01.T01:CDS
CAAAGGTGTCTTCCCGGTTC+GGG 0.406454 1:-94794602 None:intergenic
GGTTCCTTTCGCGGTCGTCC+TGG 0.408548 1:+94793138 MsG0180005672.01.T01:CDS
AATAGACAAAGGTGTCTTCC+CGG 0.408718 1:-94794608 None:intergenic
TCCACCTCCGGTTCCTTTCG+CGG 0.415535 1:+94793129 MsG0180005672.01.T01:CDS
AGGACGACCGCGAAAGGAAC+CGG 0.415718 1:-94793136 None:intergenic
CTTTCAGGTTGATCCAAAGA+AGG 0.417408 1:+94794702 MsG0180005672.01.T01:CDS
GATTCTATGGTCTGGGTTCG+AGG 0.419326 1:-94793097 None:intergenic
ACAAAGGTGTCTTCCCGGTT+CGG 0.421615 1:-94794603 None:intergenic
TATATTGTCTCTGATGGAAC+CGG 0.427728 1:+94793208 MsG0180005672.01.T01:CDS
TTAGTATAGTTACCAATAAC+GGG 0.429084 1:-94794889 None:intergenic
AGGCACACCCCATAATTTGC+AGG 0.429143 1:-94794374 None:intergenic
TGTAGAAGTGGATGTGTGTT+TGG 0.429379 1:-94792932 None:intergenic
TCTTTGCTCAGAACCCTGTC+TGG 0.434166 1:+94794866 MsG0180005672.01.T01:CDS
AACCGGAGGTGGAGAGTTGT+TGG 0.438244 1:-94793119 None:intergenic
GAAGCAATGGCCTCTGTAAT+GGG 0.440509 1:-94794415 None:intergenic
TCAATTTATATTGTCTCTGA+TGG 0.444492 1:+94793202 MsG0180005672.01.T01:CDS
GTTCAGCTGGGGACTCACCT+TGG 0.448291 1:-94793020 None:intergenic
TCTATTTATCTTGCTCAGAA+AGG 0.449468 1:+94794625 MsG0180005672.01.T01:CDS
AGAAGCAATGGCCTCTGTAA+TGG 0.453238 1:-94794416 None:intergenic
GATAATAAAGCAAGCAGTGA+AGG 0.457050 1:+94794291 MsG0180005672.01.T01:CDS
GAGGCCATTGCTTCTCATCT+GGG 0.461135 1:+94794424 MsG0180005672.01.T01:CDS
TGTACTTATGCTTGCGGTCA+TGG 0.464346 1:-94795087 None:intergenic
TTTGGCTTGACTATAAATCA+TGG 0.473507 1:+94794727 MsG0180005672.01.T01:CDS
GAAAACATATGAGTACAAAC+AGG 0.474008 1:-94793301 None:intergenic
ACCGCGAAAGGAACCGGAGG+TGG 0.481484 1:-94793130 None:intergenic
TGCCGAAGAAAATGAAGAAT+CGG 0.483994 1:-94794341 None:intergenic
ACAGTGTTCAGCGGTCCAAC+CGG 0.487559 1:-94793227 None:intergenic
CTATTTATCTTGCTCAGAAA+GGG 0.489134 1:+94794626 MsG0180005672.01.T01:CDS
TTACCAATAACGGGCCAGAC+AGG 0.490285 1:-94794880 None:intergenic
GGCACGTATTGCACGAGCCC+TGG 0.490898 1:-94793050 None:intergenic
TCAACCTGAAAGAGAGTCCT+AGG 0.502593 1:-94794691 None:intergenic
GGTCCTAGTACATCAGTAGA+AGG 0.509687 1:-94794394 None:intergenic
GGGTCAGTTTGATTATTGCT+TGG 0.511262 1:+94793264 MsG0180005672.01.T01:CDS
CCTGGACCACCGGTTCAGCT+GGG 0.512697 1:-94793032 None:intergenic
CATGCTTTGATTTGTAGAAG+TGG 0.516416 1:-94792944 None:intergenic
GTTCTGAGCAAAGAGCCTTC+CGG 0.525406 1:-94794857 None:intergenic
CTCTGACCCGTCTTCACTGA+CGG 0.526410 1:-94793167 None:intergenic
ACGGACTAATTATTCGGAGA+TGG 0.528392 1:+94794807 MsG0180005672.01.T01:CDS
ATCCAACAACTCTCCACCTC+CGG 0.531155 1:+94793117 MsG0180005672.01.T01:CDS
CCAGCTGAACCGGTGGTCCA+GGG 0.533135 1:+94793033 MsG0180005672.01.T01:CDS
TTGCACGAGCCCTGGACCAC+CGG 0.533336 1:-94793042 None:intergenic
GTGCCTTCTACTGATGTACT+AGG 0.536655 1:+94794391 MsG0180005672.01.T01:CDS
TCTCCGATGATTACTTTCGT+AGG 0.538357 1:+94794491 MsG0180005672.01.T01:CDS
ATTTCCACACCCATCACAAT+CGG 0.538484 1:-94794667 None:intergenic
AGCAGTGAAGGAAGATGCAT+TGG 0.539636 1:+94794303 MsG0180005672.01.T01:CDS
GCACCACGAGGAAGGCCAGA+AGG 0.540325 1:-94794454 None:intergenic
AGTAAGAACAATATCAGCCT+TGG 0.548023 1:-94794572 None:intergenic
TCATCCAGGACGACCGCGAA+AGG 0.552950 1:-94793142 None:intergenic
CTTCACTGACGGTGTCATCC+AGG 0.556822 1:-94793156 None:intergenic
TTACTGGGGTTTCCCGAACC+GGG 0.559295 1:+94794590 MsG0180005672.01.T01:CDS
GGCTGATATTGTTCTTACTG+GGG 0.560856 1:+94794576 MsG0180005672.01.T01:CDS
GATGACACCGTCAGTGAAGA+CGG 0.562579 1:+94793160 MsG0180005672.01.T01:CDS
TTCACTATCAAGCAAGACGA+TGG 0.569772 1:+94794529 MsG0180005672.01.T01:CDS
CACCAGAAGCACCACGAGGA+AGG 0.576537 1:-94794462 None:intergenic
TCACTATCAAGCAAGACGAT+GGG 0.581326 1:+94794530 MsG0180005672.01.T01:CDS
TACCAATAACGGGCCAGACA+GGG 0.583219 1:-94794879 None:intergenic
AGGGCTCGTGCAATACGTGC+CGG 0.584604 1:+94793052 MsG0180005672.01.T01:CDS
CTGGACCACCGGTTCAGCTG+GGG 0.586413 1:-94793031 None:intergenic
TGGGATTTAGTTCAGAATCA+CGG 0.587740 1:+94794788 MsG0180005672.01.T01:CDS
TCAGCCTTGGCAAGATTCTG+TGG 0.588473 1:-94794559 None:intergenic
CGCCAACGTACCGATTGTGA+TGG 0.588877 1:+94794657 MsG0180005672.01.T01:CDS
GCCAACGTACCGATTGTGAT+GGG 0.589268 1:+94794658 MsG0180005672.01.T01:CDS
AAACTGCAGCAGTTGTATTG+AGG 0.592098 1:+94795059 MsG0180005672.01.T01:CDS
ATGACACCGTCAGTGAAGAC+GGG 0.595160 1:+94793161 MsG0180005672.01.T01:CDS
ATCTCCACAGAATCTTGCCA+AGG 0.605005 1:+94794555 MsG0180005672.01.T01:CDS
TCTGGGTTCGAGGACTAGAC+CGG 0.605618 1:-94793087 None:intergenic
GATTATTGCTTGGTTGATCG+TGG 0.606004 1:+94793274 MsG0180005672.01.T01:CDS
ACTAGATTGATGATGTAGAG+AGG 0.606048 1:+94794260 MsG0180005672.01.T01:intron
CGAAAGTAATCATCGGAGAG+AGG 0.610443 1:-94794487 None:intergenic
CACACCCAGATGAGAAGCAA+TGG 0.612288 1:-94794428 None:intergenic
TGAGTCCCCAGCTGAACCGG+TGG 0.615425 1:+94793026 MsG0180005672.01.T01:CDS
ACCCATCACAATCGGTACGT+TGG 0.618753 1:-94794659 None:intergenic
AATCCTACGAAAGTAATCAT+CGG 0.619260 1:-94794494 None:intergenic
GGAGATGGATTATATTCGAG+AGG 0.620322 1:+94794822 MsG0180005672.01.T01:CDS
GGCATTAACACAGTGTTCAG+CGG 0.638539 1:-94793236 None:intergenic
ACATTGTGTACTTATGCTTG+CGG 0.638577 1:-94795093 None:intergenic
TGATGGGTGTGGAAATGCCT+AGG 0.639068 1:+94794674 MsG0180005672.01.T01:CDS
TGAGCAAGATAAATAGACAA+AGG 0.641852 1:-94794619 None:intergenic
CACTATCAAGCAAGACGATG+GGG 0.642286 1:+94794531 MsG0180005672.01.T01:CDS
GTGCCGGTCGAAAATTGGAC+CGG 0.644141 1:+94793068 MsG0180005672.01.T01:CDS
GTCAGTTACAGGAAAACCCA+AGG 0.646536 1:+94793003 MsG0180005672.01.T01:CDS
CGTACCGATTGTGATGGGTG+TGG 0.647163 1:+94794663 MsG0180005672.01.T01:CDS
AGGAACTTGAATTTGCCGGA+AGG 0.658330 1:+94794842 MsG0180005672.01.T01:CDS
GAGAAGGCCTGCAAATTATG+GGG 0.658515 1:+94794367 MsG0180005672.01.T01:CDS
TCTCCTTCTGGCCTTCCTCG+TGG 0.666025 1:+94794451 MsG0180005672.01.T01:CDS
TTGTCTCTGATGGAACCGGT+TGG 0.666341 1:+94793212 MsG0180005672.01.T01:CDS
ACGACCGCGAAAGGAACCGG+AGG 0.679440 1:-94793133 None:intergenic
ATAATCAAACTGACCCAAAG+CGG 0.679812 1:-94793257 None:intergenic
GGAACACCAGAAGCACCACG+AGG 0.716704 1:-94794466 None:intergenic
AAAACATATGAGTACAAACA+GGG 0.728365 1:-94793300 None:intergenic
TGTACTAGGACCCATTACAG+AGG 0.772748 1:+94794405 MsG0180005672.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAAACGAATTTAATTTAATA+GGG - Chr1:94793425-94793444 None:intergenic 10.0%
!!! TTAAACGAATTTAATTTAAT+AGG - Chr1:94793426-94793445 None:intergenic 10.0%
!! ATTCTACCTTATATATATTA+TGG + Chr1:94795291-94795310 MsG0180005672.01.T01:three_prime_UTR 15.0%
!! TAAAAATGACCTTAATTAAA+TGG - Chr1:94793737-94793756 None:intergenic 15.0%
!! TGAAAATTGTCTTATAAAAA+GGG + Chr1:94793786-94793805 MsG0180005672.01.T01:intron 15.0%
!! TTGAAAATTGTCTTATAAAA+AGG + Chr1:94793785-94793804 MsG0180005672.01.T01:intron 15.0%
!!! CAATTTTTTTTAACAACTTA+TGG - Chr1:94794074-94794093 None:intergenic 15.0%
!!! TATTTTTTTTGTTGAAAACT+CGG + Chr1:94793924-94793943 MsG0180005672.01.T01:intron 15.0%
!! AAAATAGTCTCTTTATTAGT+CGG - Chr1:94793910-94793929 None:intergenic 20.0%
!! AAAATAGTCTCTTTATTAGT+TGG - Chr1:94793910-94793929 None:intergenic 20.0%
!! ATTAAATGGAGGAAATTAAA+AGG - Chr1:94793723-94793742 None:intergenic 20.0%
!! TAATTTCCTCCATTTAATTA+AGG + Chr1:94793725-94793744 MsG0180005672.01.T01:intron 20.0%
!! TGATATATATGACACAAAAA+AGG - Chr1:94795272-94795291 None:intergenic 20.0%
!! TTTAGTATAGTTACCAATAA+CGG - Chr1:94794893-94794912 None:intergenic 20.0%
!!! AATTTTAGTGTTAGAAACTA+TGG - Chr1:94793557-94793576 None:intergenic 20.0%
!!! GATGATTAAAATTAGTGTTT+TGG - Chr1:94794195-94794214 None:intergenic 20.0%
!!! TAAATAGTCCCTAATTTTTA+CGG - Chr1:94794102-94794121 None:intergenic 20.0%
!!! TAATAATTGAAGGACATTTT+GGG - Chr1:94793677-94793696 None:intergenic 20.0%
!!! TTAATAATTGAAGGACATTT+TGG - Chr1:94793678-94793697 None:intergenic 20.0%
!!! TTTTCTTAATTCTTATGCAT+TGG - Chr1:94793613-94793632 None:intergenic 20.0%
! AAAACATATGAGTACAAACA+GGG - Chr1:94793303-94793322 None:intergenic 25.0%
! AAAACATATGAGTACTAACA+GGG - Chr1:94793394-94793413 None:intergenic 25.0%
! AAATGACCTTAATTAAATGG+AGG - Chr1:94793734-94793753 None:intergenic 25.0%
! AACTTTGATGCTTTACAATA+TGG - Chr1:94795168-94795187 None:intergenic 25.0%
! ATCAAATATTTACAATTCCG+TGG + Chr1:94794126-94794145 MsG0180005672.01.T01:intron 25.0%
! ATCATGGAGAAATTACATAT+TGG + Chr1:94793517-94793536 MsG0180005672.01.T01:intron 25.0%
! ATGTAATAGTATGATCATCA+TGG + Chr1:94793501-94793520 MsG0180005672.01.T01:intron 25.0%
! ATTAAGAGAAATGGAGTAAA+TGG + Chr1:94793693-94793712 MsG0180005672.01.T01:intron 25.0%
! CCATTTCTCTTAATAATTGA+AGG - Chr1:94793687-94793706 None:intergenic 25.0%
! CCTTCAATTATTAAGAGAAA+TGG + Chr1:94793684-94793703 MsG0180005672.01.T01:intron 25.0%
! GATGGTCCATAATATATATA+AGG - Chr1:94795300-94795319 None:intergenic 25.0%
! TATTGACATTTATAATGCCA+AGG + Chr1:94793877-94793896 MsG0180005672.01.T01:intron 25.0%
! TCAATTTATATTGTCTCTGA+TGG + Chr1:94793202-94793221 MsG0180005672.01.T01:CDS 25.0%
! TCATGGAGAAATTACATATT+GGG + Chr1:94793518-94793537 MsG0180005672.01.T01:intron 25.0%
! TGAATAAGAATATTGTTCCA+CGG - Chr1:94794146-94794165 None:intergenic 25.0%
! TTAGTATAGTTACCAATAAC+GGG - Chr1:94794892-94794911 None:intergenic 25.0%
!! TATAAATCATGGTGTTTTAC+AGG + Chr1:94794738-94794757 MsG0180005672.01.T01:CDS 25.0%
!! TTTGACTTACAAAAATCTGA+GGG + Chr1:94794034-94794053 MsG0180005672.01.T01:intron 25.0%
!! TTTGTACTCATATGTTTTCT+GGG + Chr1:94793305-94793324 MsG0180005672.01.T01:CDS 25.0%
!!! ATTGCTTTTCCGTAAAAATT+AGG + Chr1:94794090-94794109 MsG0180005672.01.T01:intron 25.0%
!!! GTGATTTTGATTAGTTCAAA+GGG + Chr1:94794947-94794966 MsG0180005672.01.T01:intron 25.0%
!!! TGTGATTTTGATTAGTTCAA+AGG + Chr1:94794946-94794965 MsG0180005672.01.T01:intron 25.0%
!!! TTGCTTTTCCGTAAAAATTA+GGG + Chr1:94794091-94794110 MsG0180005672.01.T01:intron 25.0%
!!! TTTTGACTTACAAAAATCTG+AGG + Chr1:94794033-94794052 MsG0180005672.01.T01:intron 25.0%
AAAAACAAGGGCTAAAACTT+TGG + Chr1:94794768-94794787 MsG0180005672.01.T01:CDS 30.0%
AAAACAAGGGCTAAAACTTT+GGG + Chr1:94794769-94794788 MsG0180005672.01.T01:CDS 30.0%
AACAGGGTTAGAAAACATAT+GGG - Chr1:94793378-94793397 None:intergenic 30.0%
AATCCTACGAAAGTAATCAT+CGG - Chr1:94794497-94794516 None:intergenic 30.0%
ACAGGACATTAGAAAAACAA+GGG + Chr1:94794756-94794775 MsG0180005672.01.T01:CDS 30.0%
ACATTCAAACTAATGCTGAT+GGG + Chr1:94794984-94795003 MsG0180005672.01.T01:intron 30.0%
CAATCTGGATAAAGAATGAA+GGG - Chr1:94793344-94793363 None:intergenic 30.0%
CTATTTATCTTGCTCAGAAA+GGG + Chr1:94794626-94794645 MsG0180005672.01.T01:CDS 30.0%
GAAAACATATGAGTACAAAC+AGG - Chr1:94793304-94793323 None:intergenic 30.0%
GAAAACATATGAGTACTAAC+AGG - Chr1:94793395-94793414 None:intergenic 30.0%
TAACAGGGTTAGAAAACATA+TGG - Chr1:94793379-94793398 None:intergenic 30.0%
TACAGGACATTAGAAAAACA+AGG + Chr1:94794755-94794774 MsG0180005672.01.T01:CDS 30.0%
TACATTCAAACTAATGCTGA+TGG + Chr1:94794983-94795002 MsG0180005672.01.T01:intron 30.0%
TCTATTTATCTTGCTCAGAA+AGG + Chr1:94794625-94794644 MsG0180005672.01.T01:CDS 30.0%
TGAGCAAGATAAATAGACAA+AGG - Chr1:94794622-94794641 None:intergenic 30.0%
TTTGGACATAATCGTGAAAT+TGG - Chr1:94792917-94792936 None:intergenic 30.0%
! AGAATCACGGACTAATTATT+CGG + Chr1:94794801-94794820 MsG0180005672.01.T01:CDS 30.0%
! GTTTGTACTCATATGTTTTC+TGG + Chr1:94793304-94793323 MsG0180005672.01.T01:CDS 30.0%
! TTAGTACTCATATGTTTTCG+TGG + Chr1:94793396-94793415 MsG0180005672.01.T01:intron 30.0%
! TTGTACTCATATGTTTTCTG+GGG + Chr1:94793306-94793325 MsG0180005672.01.T01:CDS 30.0%
!! ACAAAGGTGTCTTACATATA+GGG + Chr1:94793828-94793847 MsG0180005672.01.T01:intron 30.0%
!! TACAAAGGTGTCTTACATAT+AGG + Chr1:94793827-94793846 MsG0180005672.01.T01:intron 30.0%
!! TTTGGCTTGACTATAAATCA+TGG + Chr1:94794727-94794746 MsG0180005672.01.T01:CDS 30.0%
AAGGCTGATATTGTTCTTAC+TGG + Chr1:94794574-94794593 MsG0180005672.01.T01:CDS 35.0%
ACATTGTGTACTTATGCTTG+CGG - Chr1:94795096-94795115 None:intergenic 35.0%
AGCATCTCAAAACGCTATTA+GGG + Chr1:94795118-94795137 MsG0180005672.01.T01:CDS 35.0%
AGGCTGATATTGTTCTTACT+GGG + Chr1:94794575-94794594 MsG0180005672.01.T01:CDS 35.0%
AGTAAGAACAATATCAGCCT+TGG - Chr1:94794575-94794594 None:intergenic 35.0%
ATAATCAAACTGACCCAAAG+CGG - Chr1:94793260-94793279 None:intergenic 35.0%
GATAATAAAGCAAGCAGTGA+AGG + Chr1:94794291-94794310 MsG0180005672.01.T01:CDS 35.0%
GCAATCTGGATAAAGAATGA+AGG - Chr1:94793345-94793364 None:intergenic 35.0%
TAGCATCTCAAAACGCTATT+AGG + Chr1:94795117-94795136 MsG0180005672.01.T01:CDS 35.0%
TATATTGTCTCTGATGGAAC+CGG + Chr1:94793208-94793227 MsG0180005672.01.T01:CDS 35.0%
TGCCGAAGAAAATGAAGAAT+CGG - Chr1:94794344-94794363 None:intergenic 35.0%
TTATTAGTCGGTCTTTGAAC+CGG - Chr1:94793953-94793972 None:intergenic 35.0%
TTTGTTGAAAACTCGGTATC+CGG + Chr1:94793931-94793950 MsG0180005672.01.T01:intron 35.0%
! GTTGATCCAAAGAAGGTTTT+TGG + Chr1:94794709-94794728 MsG0180005672.01.T01:CDS 35.0%
! TGATGATGTAGAGAGGTTAT+TGG + Chr1:94794267-94794286 MsG0180005672.01.T01:CDS 35.0%
! TGGGATTTAGTTCAGAATCA+CGG + Chr1:94794788-94794807 MsG0180005672.01.T01:CDS 35.0%
!! ACTAGATTGATGATGTAGAG+AGG + Chr1:94794260-94794279 MsG0180005672.01.T01:intron 35.0%
!! AGCCGATTCTTCATTTTCTT+CGG + Chr1:94794339-94794358 MsG0180005672.01.T01:CDS 35.0%
!! CATGCTTTGATTTGTAGAAG+TGG - Chr1:94792947-94792966 None:intergenic 35.0%
!! TATTAGTTGGTCTTTGTCCT+TGG - Chr1:94793897-94793916 None:intergenic 35.0%
!!! ACTGTCATTTTACAATGCCA+GGG + Chr1:94793986-94794005 MsG0180005672.01.T01:intron 35.0%
AAACTGCAGCAGTTGTATTG+AGG + Chr1:94795059-94795078 MsG0180005672.01.T01:CDS 40.0%
AACAACAACAACAACGACAC+AGG + Chr1:94792974-94792993 MsG0180005672.01.T01:CDS 40.0%
AGGGTTAGAAAACATATGGG+TGG - Chr1:94793375-94793394 None:intergenic 40.0%
AGTTGTTGGATTCTATGGTC+TGG - Chr1:94793108-94793127 None:intergenic 40.0%
ATTTCCACACCCATCACAAT+CGG - Chr1:94794670-94794689 None:intergenic 40.0%
GATTATTGCTTGGTTGATCG+TGG + Chr1:94793274-94793293 MsG0180005672.01.T01:CDS 40.0%
GGCTGATATTGTTCTTACTG+GGG + Chr1:94794576-94794595 MsG0180005672.01.T01:CDS 40.0%
GGGTCAGTTTGATTATTGCT+TGG + Chr1:94793264-94793283 MsG0180005672.01.T01:CDS 40.0%
GGGTTAGAAAACATATGGGT+GGG - Chr1:94793374-94793393 None:intergenic 40.0%
GTCAAGCCAAAAACCTTCTT+TGG - Chr1:94794718-94794737 None:intergenic 40.0%
GTTGTTGGATTCTATGGTCT+GGG - Chr1:94793107-94793126 None:intergenic 40.0%
TATATTGCTACGTTTGTCCC+TGG - Chr1:94794006-94794025 None:intergenic 40.0%
TCACTATCAAGCAAGACGAT+GGG + Chr1:94794530-94794549 MsG0180005672.01.T01:CDS 40.0%
TCCCTATTTGTAAAACCCTG+TGG + Chr1:94793587-94793606 MsG0180005672.01.T01:intron 40.0%
TCTCCGATGATTACTTTCGT+AGG + Chr1:94794491-94794510 MsG0180005672.01.T01:CDS 40.0%
TGAGAAGGCCTGCAAATTAT+GGG + Chr1:94794366-94794385 MsG0180005672.01.T01:CDS 40.0%
TGGAGAGTTGTTGGATTCTA+TGG - Chr1:94793113-94793132 None:intergenic 40.0%
TGTAGAAGTGGATGTGTGTT+TGG - Chr1:94792935-94792954 None:intergenic 40.0%
TTCACTATCAAGCAAGACGA+TGG + Chr1:94794529-94794548 MsG0180005672.01.T01:CDS 40.0%
! AATTCTTATGCATTGGCCAC+AGG - Chr1:94793606-94793625 None:intergenic 40.0%
! ACGGACTAATTATTCGGAGA+TGG + Chr1:94794807-94794826 MsG0180005672.01.T01:CDS 40.0%
! ATTCTTATGCATTGGCCACA+GGG - Chr1:94793605-94793624 None:intergenic 40.0%
! GCCACAGGGTTTTACAAATA+GGG - Chr1:94793591-94793610 None:intergenic 40.0%
! TCTTGCTCAGAAAGGGTATA+AGG + Chr1:94794633-94794652 MsG0180005672.01.T01:CDS 40.0%
! TGTCGTTGTTGTTGTTGTTG+CGG - Chr1:94792973-94792992 None:intergenic 40.0%
!! AATAGACAAAGGTGTCTTCC+CGG - Chr1:94794611-94794630 None:intergenic 40.0%
!! CTTTCAGGTTGATCCAAAGA+AGG + Chr1:94794702-94794721 MsG0180005672.01.T01:CDS 40.0%
!! GGAGATGGATTATATTCGAG+AGG + Chr1:94794822-94794841 MsG0180005672.01.T01:CDS 40.0%
!!! AGTCGTATATTTTAGCCAGC+AGG + Chr1:94795242-94795261 MsG0180005672.01.T01:three_prime_UTR 40.0%
!!! GACTGTCATTTTACAATGCC+AGG + Chr1:94793985-94794004 MsG0180005672.01.T01:intron 40.0%
AATGCCTAGGACTCTCTTTC+AGG + Chr1:94794687-94794706 MsG0180005672.01.T01:CDS 45.0%
ACAGGATCCAAGTCAGTTAC+AGG + Chr1:94792992-94793011 MsG0180005672.01.T01:CDS 45.0%
AGAAGCAATGGCCTCTGTAA+TGG - Chr1:94794419-94794438 None:intergenic 45.0%
AGCAGTGAAGGAAGATGCAT+TGG + Chr1:94794303-94794322 MsG0180005672.01.T01:CDS 45.0%
AGGAACTTGAATTTGCCGGA+AGG + Chr1:94794842-94794861 MsG0180005672.01.T01:CDS 45.0%
ATCTCCACAGAATCTTGCCA+AGG + Chr1:94794555-94794574 MsG0180005672.01.T01:CDS 45.0%
CACTATCAAGCAAGACGATG+GGG + Chr1:94794531-94794550 MsG0180005672.01.T01:CDS 45.0%
CGAAAGTAATCATCGGAGAG+AGG - Chr1:94794490-94794509 None:intergenic 45.0%
CGAGAGGAACTTGAATTTGC+CGG + Chr1:94794838-94794857 MsG0180005672.01.T01:CDS 45.0%
CTGAGAAGGCCTGCAAATTA+TGG + Chr1:94794365-94794384 MsG0180005672.01.T01:CDS 45.0%
GAAGCAATGGCCTCTGTAAT+GGG - Chr1:94794418-94794437 None:intergenic 45.0%
GAGAAGGCCTGCAAATTATG+GGG + Chr1:94794367-94794386 MsG0180005672.01.T01:CDS 45.0%
GGCATTAACACAGTGTTCAG+CGG - Chr1:94793239-94793258 None:intergenic 45.0%
GGTCCTAGTACATCAGTAGA+AGG - Chr1:94794397-94794416 None:intergenic 45.0%
GTCAGTTACAGGAAAACCCA+AGG + Chr1:94793003-94793022 MsG0180005672.01.T01:CDS 45.0%
GTGCCTTCTACTGATGTACT+AGG + Chr1:94794391-94794410 MsG0180005672.01.T01:CDS 45.0%
TCAACCTGAAAGAGAGTCCT+AGG - Chr1:94794694-94794713 None:intergenic 45.0%
TGGGTGGGTATAAAGCAATC+TGG - Chr1:94793359-94793378 None:intergenic 45.0%
TGTACTAGGACCCATTACAG+AGG + Chr1:94794405-94794424 MsG0180005672.01.T01:CDS 45.0%
TGTACTTATGCTTGCGGTCA+TGG - Chr1:94795090-94795109 None:intergenic 45.0%
! AATACGTGCCGGTCGAAAAT+TGG + Chr1:94793063-94793082 MsG0180005672.01.T01:CDS 45.0%
! ACACTGTGTTAATGCCGCTT+TGG + Chr1:94793243-94793262 MsG0180005672.01.T01:CDS 45.0%
! ATTTTCTTCGGCAGCTGAGA+AGG + Chr1:94794351-94794370 MsG0180005672.01.T01:CDS 45.0%
! CACAAAAAAGGCATACCTGC+TGG - Chr1:94795260-94795279 None:intergenic 45.0%
! GGCCACAGGGTTTTACAAAT+AGG - Chr1:94793592-94793611 None:intergenic 45.0%
! GGGTTTTCCTGTAACTGACT+TGG - Chr1:94793002-94793021 None:intergenic 45.0%
!! CACTGTGTTAATGCCGCTTT+GGG + Chr1:94793244-94793263 MsG0180005672.01.T01:CDS 45.0%
!!! ATTTTTTTTTTTTTTTACAA+AGG + Chr1:94793812-94793831 MsG0180005672.01.T01:intron 5.0%
ACCCATCACAATCGGTACGT+TGG - Chr1:94794662-94794681 None:intergenic 50.0%
AGAGGCCATTGCTTCTCATC+TGG + Chr1:94794423-94794442 MsG0180005672.01.T01:CDS 50.0%
ATCCAACAACTCTCCACCTC+CGG + Chr1:94793117-94793136 MsG0180005672.01.T01:CDS 50.0%
ATGACACCGTCAGTGAAGAC+GGG + Chr1:94793161-94793180 MsG0180005672.01.T01:CDS 50.0%
CACACCCAGATGAGAAGCAA+TGG - Chr1:94794431-94794450 None:intergenic 50.0%
GAGGCCATTGCTTCTCATCT+GGG + Chr1:94794424-94794443 MsG0180005672.01.T01:CDS 50.0%
GATGACACCGTCAGTGAAGA+CGG + Chr1:94793160-94793179 MsG0180005672.01.T01:CDS 50.0%
GATTCTATGGTCTGGGTTCG+AGG - Chr1:94793100-94793119 None:intergenic 50.0%
TCAGCCTTGGCAAGATTCTG+TGG - Chr1:94794562-94794581 None:intergenic 50.0%
TCTTTGCTCAGAACCCTGTC+TGG + Chr1:94794866-94794885 MsG0180005672.01.T01:CDS 50.0%
TTGTCTCTGATGGAACCGGT+TGG + Chr1:94793212-94793231 MsG0180005672.01.T01:CDS 50.0%
! AGACCGGTCCAATTTTCGAC+CGG - Chr1:94793074-94793093 None:intergenic 50.0%
! AGGCACACCCCATAATTTGC+AGG - Chr1:94794377-94794396 None:intergenic 50.0%
! GTTCTGAGCAAAGAGCCTTC+CGG - Chr1:94794860-94794879 None:intergenic 50.0%
! TGATGGGTGTGGAAATGCCT+AGG + Chr1:94794674-94794693 MsG0180005672.01.T01:CDS 50.0%
!! ACAAAGGTGTCTTCCCGGTT+CGG - Chr1:94794606-94794625 None:intergenic 50.0%
!! GCCAACGTACCGATTGTGAT+GGG + Chr1:94794658-94794677 MsG0180005672.01.T01:CDS 50.0%
!! TACCAATAACGGGCCAGACA+GGG - Chr1:94794882-94794901 None:intergenic 50.0%
!! TTACCAATAACGGGCCAGAC+AGG - Chr1:94794883-94794902 None:intergenic 50.0%
AACCCTGTCTGGCCCGTTAT+TGG + Chr1:94794877-94794896 MsG0180005672.01.T01:CDS 55.0%
AACCGGAGGTGGAGAGTTGT+TGG - Chr1:94793122-94793141 None:intergenic 55.0%
ACAGTGTTCAGCGGTCCAAC+CGG - Chr1:94793230-94793249 None:intergenic 55.0%
CATCTGGGTGTGTCTCCTTC+TGG + Chr1:94794439-94794458 MsG0180005672.01.T01:CDS 55.0%
CTCTGACCCGTCTTCACTGA+CGG - Chr1:94793170-94793189 None:intergenic 55.0%
CTTACTGGGGTTTCCCGAAC+CGG + Chr1:94794589-94794608 MsG0180005672.01.T01:CDS 55.0%
TCTGGGTTCGAGGACTAGAC+CGG - Chr1:94793090-94793109 None:intergenic 55.0%
TTACTGGGGTTTCCCGAACC+GGG + Chr1:94794590-94794609 MsG0180005672.01.T01:CDS 55.0%
TTCAGCTGGGGACTCACCTT+GGG - Chr1:94793022-94793041 None:intergenic 55.0%
! GTGCCGGTCGAAAATTGGAC+CGG + Chr1:94793068-94793087 MsG0180005672.01.T01:CDS 55.0%
!! CAAAGGTGTCTTCCCGGTTC+GGG - Chr1:94794605-94794624 None:intergenic 55.0%
!! CGCCAACGTACCGATTGTGA+TGG + Chr1:94794657-94794676 MsG0180005672.01.T01:CDS 55.0%
!! CGTACCGATTGTGATGGGTG+TGG + Chr1:94794663-94794682 MsG0180005672.01.T01:CDS 55.0%
!! CTTCACTGACGGTGTCATCC+AGG - Chr1:94793159-94793178 None:intergenic 55.0%
AGGACGACCGCGAAAGGAAC+CGG - Chr1:94793139-94793158 None:intergenic 60.0%
AGGGCTCGTGCAATACGTGC+CGG + Chr1:94793052-94793071 MsG0180005672.01.T01:CDS 60.0%
AGGTGAGTCCCCAGCTGAAC+CGG + Chr1:94793023-94793042 MsG0180005672.01.T01:CDS 60.0%
GTTCAGCTGGGGACTCACCT+TGG - Chr1:94793023-94793042 None:intergenic 60.0%
TCATCCAGGACGACCGCGAA+AGG - Chr1:94793145-94793164 None:intergenic 60.0%
TCCACCTCCGGTTCCTTTCG+CGG + Chr1:94793129-94793148 MsG0180005672.01.T01:CDS 60.0%
! TCTCCTTCTGGCCTTCCTCG+TGG + Chr1:94794451-94794470 MsG0180005672.01.T01:CDS 60.0%
!! CACCAGAAGCACCACGAGGA+AGG - Chr1:94794465-94794484 None:intergenic 60.0%
!! GGAACACCAGAAGCACCACG+AGG - Chr1:94794469-94794488 None:intergenic 60.0%
ACCGCGAAAGGAACCGGAGG+TGG - Chr1:94793133-94793152 None:intergenic 65.0%
ACGACCGCGAAAGGAACCGG+AGG - Chr1:94793136-94793155 None:intergenic 65.0%
CCAGCTGAACCGGTGGTCCA+GGG + Chr1:94793033-94793052 MsG0180005672.01.T01:CDS 65.0%
GCACCACGAGGAAGGCCAGA+AGG - Chr1:94794457-94794476 None:intergenic 65.0%
GGCACGTATTGCACGAGCCC+TGG - Chr1:94793053-94793072 None:intergenic 65.0%
GGCCTTCCTCGTGGTGCTTC+TGG + Chr1:94794460-94794479 MsG0180005672.01.T01:CDS 65.0%
GGTTCCTTTCGCGGTCGTCC+TGG + Chr1:94793138-94793157 MsG0180005672.01.T01:CDS 65.0%
TGAGTCCCCAGCTGAACCGG+TGG + Chr1:94793026-94793045 MsG0180005672.01.T01:CDS 65.0%
TTGCACGAGCCCTGGACCAC+CGG - Chr1:94793045-94793064 None:intergenic 65.0%
!! CCTGGACCACCGGTTCAGCT+GGG - Chr1:94793035-94793054 None:intergenic 65.0%
!! CTGGACCACCGGTTCAGCTG+GGG - Chr1:94793034-94793053 None:intergenic 65.0%
CCCAGCTGAACCGGTGGTCC+AGG + Chr1:94793032-94793051 MsG0180005672.01.T01:CDS 70.0%
!! CCCTGGACCACCGGTTCAGC+TGG - Chr1:94793036-94793055 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
Chr1 gene 94792861 94795320 94792861 ID=MsG0180005672.01;Name=MsG0180005672.01
Chr1 mRNA 94792861 94795320 94792861 ID=MsG0180005672.01.T01;Parent=MsG0180005672.01;Name=MsG0180005672.01.T01;_AED=0.35;_eAED=0.35;_QI=50|1|1|1|1|1|3|182|384
Chr1 exon 94792861 94793327 94792861 ID=MsG0180005672.01.T01:exon:19207;Parent=MsG0180005672.01.T01
Chr1 exon 94794265 94794898 94794265 ID=MsG0180005672.01.T01:exon:19208;Parent=MsG0180005672.01.T01
Chr1 exon 94795035 94795320 94795035 ID=MsG0180005672.01.T01:exon:19209;Parent=MsG0180005672.01.T01
Chr1 five_prime_UTR 94792861 94792910 94792861 ID=MsG0180005672.01.T01:five_prime_utr;Parent=MsG0180005672.01.T01
Chr1 CDS 94792911 94793327 94792911 ID=MsG0180005672.01.T01:cds;Parent=MsG0180005672.01.T01
Chr1 CDS 94794265 94794898 94794265 ID=MsG0180005672.01.T01:cds;Parent=MsG0180005672.01.T01
Chr1 CDS 94795035 94795138 94795035 ID=MsG0180005672.01.T01:cds;Parent=MsG0180005672.01.T01
Chr1 three_prime_UTR 94795139 94795320 94795139 ID=MsG0180005672.01.T01:three_prime_utr;Parent=MsG0180005672.01.T01
Gene Sequence

>MsG0180005672.01.T01

ATGCCAATTTCACGATTATGTCCAAACACACATCCACTTCTACAAATCAAAGCATGCAACCGCAACAACAACAACAACGACACAGGATCCAAGTCAGTTACAGGAAAACCCAAGGTGAGTCCCCAGCTGAACCGGTGGTCCAGGGCTCGTGCAATACGTGCCGGTCGAAAATTGGACCGGTCTAGTCCTCGAACCCAGACCATAGAATCCAACAACTCTCCACCTCCGGTTCCTTTCGCGGTCGTCCTGGATGACACCGTCAGTGAAGACGGGTCAGAGTTCAGAGCTAAGTCAATTTATATTGTCTCTGATGGAACCGGTTGGACCGCTGAACACTGTGTTAATGCCGCTTTGGGTCAGTTTGATTATTGCTTGGTTGATCGTGGTTGCCCTGTTTGTACTCATATGTTTTCTGGGATTGATGATGTAGAGAGGTTATTGGAGATAATAAAGCAAGCAGTGAAGGAAGATGCATTGGTTGTGTATACTTTAGCCGATTCTTCATTTTCTTCGGCAGCTGAGAAGGCCTGCAAATTATGGGGTGTGCCTTCTACTGATGTACTAGGACCCATTACAGAGGCCATTGCTTCTCATCTGGGTGTGTCTCCTTCTGGCCTTCCTCGTGGTGCTTCTGGTGTTCCTCTCTCCGATGATTACTTTCGTAGGATTGAAGCTATTGAATTCACTATCAAGCAAGACGATGGGGCATCTCCACAGAATCTTGCCAAGGCTGATATTGTTCTTACTGGGGTTTCCCGAACCGGGAAGACACCTTTGTCTATTTATCTTGCTCAGAAAGGGTATAAGGTCGCCAACGTACCGATTGTGATGGGTGTGGAAATGCCTAGGACTCTCTTTCAGGTTGATCCAAAGAAGGTTTTTGGCTTGACTATAAATCATGGTGTTTTACAGGACATTAGAAAAACAAGGGCTAAAACTTTGGGATTTAGTTCAGAATCACGGACTAATTATTCGGAGATGGATTATATTCGAGAGGAACTTGAATTTGCCGGAAGGCTCTTTGCTCAGAACCCTGTCTGGCCCGTTATTGATGTGACTGCTAAAGCGATAGAAGAAACTGCAGCAGTTGTATTGAGGCTGTTCCATGACCGCAAGCATAAGTACACAATGTCTAGCATCTCAAAACGCTATTAG

Protein sequence

>MsG0180005672.01.T01

MPISRLCPNTHPLLQIKACNRNNNNNDTGSKSVTGKPKVSPQLNRWSRARAIRAGRKLDRSSPRTQTIESNNSPPPVPFAVVLDDTVSEDGSEFRAKSIYIVSDGTGWTAEHCVNAALGQFDYCLVDRGCPVCTHMFSGIDDVERLLEIIKQAVKEDALVVYTLADSSFSSAAEKACKLWGVPSTDVLGPITEAIASHLGVSPSGLPRGASGVPLSDDYFRRIEAIEFTIKQDDGASPQNLAKADIVLTGVSRTGKTPLSIYLAQKGYKVANVPIVMGVEMPRTLFQVDPKKVFGLTINHGVLQDIRKTRAKTLGFSSESRTNYSEMDYIREELEFAGRLFAQNPVWPVIDVTAKAIEETAAVVLRLFHDRKHKYTMSSISKRY*