AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0180005555.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180005555.01.T01 MTR_1g102780 97.000 200 5 1 1 199 1 200 8.55e-138 383
MsG0180005555.01.T01 MTR_1g102800 91.960 199 14 1 1 199 1 197 5.79e-111 315
MsG0180005555.01.T01 MTR_1g102570 88.889 180 18 1 20 199 21 198 5.31e-110 313
MsG0180005555.01.T01 MTR_1g102830 82.222 180 18 2 20 199 21 186 3.29e-102 293
MsG0180005555.01.T01 MTR_1g102810 78.689 183 25 2 17 199 14 182 1.63e-99 286
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180005555.01.T01 AT3G22840 53.886 193 83 3 7 199 9 195 9.07e-61 188
MsG0180005555.01.T01 AT4G14690 56.647 173 72 2 28 199 23 193 3.34e-57 179

Find 80 sgRNAs with CRISPR-Local

Find 353 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAGAAGGGATGTTGTTAAAT+TGG 0.214729 1:-93234876 None:intergenic
TAGGAACACGATTAAGGTTT+AGG 0.232835 1:+93235678 MsG0180005555.01.T01:three_prime_UTR
GGTGCTGATGGTGGTGTAAT+TGG 0.245963 1:-93235156 None:intergenic
TTTCTATAGGAACACGATTA+AGG 0.263324 1:+93235672 MsG0180005555.01.T01:three_prime_UTR
TGGTGGAATTCCATGGTTCT+TGG 0.288858 1:+93235466 MsG0180005555.01.T01:CDS
GGTGGAATTCCATGGTTCTT+GGG 0.299911 1:+93235467 MsG0180005555.01.T01:CDS
AAGGTTTAGGGTTTATGATT+AGG 0.303616 1:+93235691 MsG0180005555.01.T01:three_prime_UTR
GGTTTGTTTGATCAAATATC+TGG 0.314167 1:+93235443 MsG0180005555.01.T01:CDS
CTACCAACCTTAACCATCTA+AGG 0.316626 1:+93231346 None:intergenic
AGGAACACGATTAAGGTTTA+GGG 0.330309 1:+93235679 MsG0180005555.01.T01:three_prime_UTR
GTTGGTTGTGGTTGTGGTGG+TGG 0.344690 1:-93235183 None:intergenic
TGTGGTTGTGGTGGTGGAGT+TGG 0.352890 1:-93235177 None:intergenic
TATGTTGGGTTTGATTGCTT+TGG 0.357312 1:+93235607 MsG0180005555.01.T01:CDS
ATTGGGTCTACAGGCACCTT+TGG 0.360861 1:-93235138 None:intergenic
ACCATTACATACACCTTAGA+TGG 0.367971 1:-93231359 None:intergenic
ATACATAAAGTTTCATGTAT+TGG 0.369844 1:-93235716 None:intergenic
AATGGAAGGTTGGCTATGAT+TGG 0.393839 1:+93235380 MsG0180005555.01.T01:CDS
AGAGTAATTATTCACTCCTA+TGG 0.402451 1:+93235964 MsG0180005555.01.T01:three_prime_UTR
CCATTGATTCTCTCAGGTGC+TGG 0.411549 1:-93235362 None:intergenic
ACATACACCTTAGATGGTTA+AGG 0.412498 1:-93231353 None:intergenic
GGTGGTGGAGTTGGTGCTGA+TGG 0.417357 1:-93235168 None:intergenic
CACCTTTGGTGAACGAGTAT+AGG 0.424707 1:-93235205 None:intergenic
AACCTTCCATTGATTCTCTC+AGG 0.436061 1:-93235368 None:intergenic
GAATGGAAGAATAGCTATGT+TGG 0.436992 1:+93235592 MsG0180005555.01.T01:CDS
GTGCTGATGGTGGTGTAATT+GGG 0.440700 1:-93235155 None:intergenic
CTTGTGTAATAGATTTCTAT+AGG 0.448311 1:+93235659 MsG0180005555.01.T01:exon
TCTAGGCCTGCTTGAAATGC+TGG 0.450968 1:-93234848 None:intergenic
GTATAGGTTGGTTGTGGTTG+TGG 0.452125 1:-93235189 None:intergenic
TTGTTAAATTGGTTAACTCT+AGG 0.463045 1:-93234865 None:intergenic
GTGGAATTCCATGGTTCTTG+GGG 0.468120 1:+93235468 MsG0180005555.01.T01:CDS
GGTGGAGTTGGTGCTGATGG+TGG 0.468618 1:-93235165 None:intergenic
TGTCCTCAGATGCTGAGTTA+TGG 0.479277 1:+93235570 MsG0180005555.01.T01:CDS
CATTAAGAACTTATAATCAA+TGG 0.480276 1:+93234786 MsG0180005555.01.T01:exon
CGGATTTGATGGCATTTGGT+GGG 0.485102 1:+93235339 MsG0180005555.01.T01:CDS
TCGGATTTGATGGCATTTGG+TGG 0.487791 1:+93235338 MsG0180005555.01.T01:CDS
TACTTGTTTCCCTCATTCAA+AGG 0.487872 1:-93236057 None:intergenic
ACTTGTTTCCCTCATTCAAA+GGG 0.488787 1:-93236056 None:intergenic
AAACTTTATGTATATTCGTA+TGG 0.490998 1:+93235726 MsG0180005555.01.T01:three_prime_UTR
GGAATGCTAGCCTCAAAGTT+CGG 0.497529 1:+93234920 MsG0180005555.01.T01:CDS
AATGGAAGAATAGCTATGTT+GGG 0.501527 1:+93235593 MsG0180005555.01.T01:CDS
CATAAAATACTCTATTAGAG+AGG 0.502086 1:+93236026 MsG0180005555.01.T01:three_prime_UTR
GGTGGTGTAATTGGGTCTAC+AGG 0.516474 1:-93235147 None:intergenic
CCAGCACCTGAGAGAATCAA+TGG 0.516939 1:+93235362 MsG0180005555.01.T01:CDS
TAGGTTGGTTGTGGTTGTGG+TGG 0.523841 1:-93235186 None:intergenic
AGTGTGGAGTCTAAGTCAAA+AGG 0.525000 1:+93235542 MsG0180005555.01.T01:CDS
CAGCCATGGACCGAACTTTG+AGG 0.527132 1:-93234930 None:intergenic
CGAAAACATTACCTCAGCCA+TGG 0.528935 1:-93234944 None:intergenic
CAAAGTTCGGTCCATGGCTG+AGG 0.533870 1:+93234933 MsG0180005555.01.T01:CDS
GGGTATACACCCTTTGAATG+AGG 0.535936 1:+93236047 MsG0180005555.01.T01:three_prime_UTR
GGATGGCTTTGTAAAACACT+TGG 0.536418 1:-93234734 None:intergenic
CTAGCATTCCTTCTGAAGCT+AGG 0.541676 1:-93234907 None:intergenic
GGTGGAGATAGCAAATGGAC+AGG 0.547189 1:+93235421 MsG0180005555.01.T01:CDS
CCTGCTTGAAATGCTGGTCA+TGG 0.548863 1:-93234842 None:intergenic
TTTGATCAAATATCTGGTGG+TGG 0.559193 1:+93235449 MsG0180005555.01.T01:CDS
TGAGAGAATCAATGGAAGGT+TGG 0.560259 1:+93235370 MsG0180005555.01.T01:CDS
GAACGAGTATAGGTTGGTTG+TGG 0.560878 1:-93235195 None:intergenic
GAGTAATTATTCACTCCTAT+GGG 0.561585 1:+93235965 MsG0180005555.01.T01:three_prime_UTR
TCAGATGCTGAGTTATGGAA+TGG 0.568279 1:+93235575 MsG0180005555.01.T01:CDS
TTGTTTGATCAAATATCTGG+TGG 0.570609 1:+93235446 MsG0180005555.01.T01:CDS
TAGCCTCAAAGTTCGGTCCA+TGG 0.581082 1:+93234927 MsG0180005555.01.T01:CDS
CTATAGAAATCTATTACACA+AGG 0.583097 1:-93235658 None:intergenic
TTTGGTGAACGAGTATAGGT+TGG 0.589396 1:-93235201 None:intergenic
AAGCTAGGCATATACACAGA+AGG 0.589450 1:-93234892 None:intergenic
ATTCCATAACTCAGCATCTG+AGG 0.591329 1:-93235573 None:intergenic
AACCTATACTCGTTCACCAA+AGG 0.597244 1:+93235203 MsG0180005555.01.T01:CDS
TAGACTCCACACTAACACCT+TGG 0.597870 1:-93235532 None:intergenic
GGTATACACCCTTTGAATGA+GGG 0.598851 1:+93236048 MsG0180005555.01.T01:three_prime_UTR
AATTCATCAAATCATCCCAT+AGG 0.598960 1:-93235980 None:intergenic
TGTATATGCCTAGCTTCAGA+AGG 0.600911 1:+93234899 MsG0180005555.01.T01:CDS
CCATGACCAGCATTTCAAGC+AGG 0.603962 1:+93234842 MsG0180005555.01.T01:CDS
ATAAAATACTCTATTAGAGA+GGG 0.604113 1:+93236027 MsG0180005555.01.T01:three_prime_UTR
AGCTAGGCATATACACAGAA+GGG 0.613758 1:-93234891 None:intergenic
TATCTGGTGGTGGAATTCCA+TGG 0.624337 1:+93235459 MsG0180005555.01.T01:CDS
ACACCTTAGATGGTTAAGGT+TGG 0.629675 1:-93231349 None:intergenic
AGGGCAGAAAGAGCAACCAA+AGG 0.630670 1:+93235122 MsG0180005555.01.T01:CDS
ACACTTGTCCCCAAGAACCA+TGG 0.633615 1:-93235476 None:intergenic
GTGGAGATAGCAAATGGACA+GGG 0.645295 1:+93235422 MsG0180005555.01.T01:CDS
CACCTGAGAGAATCAATGGA+AGG 0.646646 1:+93235366 MsG0180005555.01.T01:CDS
TATAGAAATCTATTACACAA+GGG 0.705502 1:-93235657 None:intergenic
AGAAATCTATTACACAAGGG+CGG 0.719843 1:-93235654 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TACTATTTATATTTATAGAT+TGG - Chr1:93235900-93235919 None:intergenic 10.0%
!! AAGGAAAATCAAAAAAAATA+TGG + Chr1:93232533-93232552 MsG0180005555.01.T01:intron 15.0%
!! AAGTAATAATGATGAAAATA+TGG + Chr1:93235297-93235316 MsG0180005555.01.T01:intron 15.0%
!! ATTAAAGTCTATAAAATTTG+CGG + Chr1:93235867-93235886 MsG0180005555.01.T01:intron 15.0%
!!! ATATTTTCATCATTATTACT+TGG - Chr1:93235298-93235317 None:intergenic 15.0%
!!! TAGTTTTAATTTTTAAGAGA+GGG + Chr1:93235941-93235960 MsG0180005555.01.T01:three_prime_UTR 15.0%
!!! TTAGTTTTAATTTTTAAGAG+AGG + Chr1:93235940-93235959 MsG0180005555.01.T01:three_prime_UTR 15.0%
!! AAACTTTATGTATATTCGTA+TGG + Chr1:93235726-93235745 MsG0180005555.01.T01:three_prime_UTR 20.0%
!! AGAAAATAAGGCAATTAAAA+TGG + Chr1:93232753-93232772 MsG0180005555.01.T01:intron 20.0%
!! ATAAAATACTCTATTAGAGA+GGG + Chr1:93236027-93236046 MsG0180005555.01.T01:three_prime_UTR 20.0%
!! ATACAACATAGAAATGAAAT+AGG + Chr1:93232157-93232176 MsG0180005555.01.T01:intron 20.0%
!! ATACATAAAGTTTCATGTAT+TGG - Chr1:93235719-93235738 None:intergenic 20.0%
!! ATGGTTCTTAAAATTGATAA+TGG + Chr1:93231377-93231396 MsG0180005555.01.T01:intron 20.0%
!! CATTAAGAACTTATAATCAA+TGG + Chr1:93234786-93234805 MsG0180005555.01.T01:exon 20.0%
!! TATAGAAATCTATTACACAA+GGG - Chr1:93235660-93235679 None:intergenic 20.0%
!! TCAATTAAAATTGATGTTCT+TGG + Chr1:93231459-93231478 MsG0180005555.01.T01:intron 20.0%
!! TCTCTTAATCTTCTATAAAA+GGG - Chr1:93231619-93231638 None:intergenic 20.0%
!! TGAATTGATTGTGAAATAAA+AGG + Chr1:93231416-93231435 MsG0180005555.01.T01:intron 20.0%
!! TTCTCTTAATCTTCTATAAA+AGG - Chr1:93231620-93231639 None:intergenic 20.0%
!!! AATTTTAAGAACCATTACAT+TGG - Chr1:93231372-93231391 None:intergenic 20.0%
!!! AGTTTTTCATTACATTTATC+AGG + Chr1:93235098-93235117 MsG0180005555.01.T01:intron 20.0%
!!! TAAGGTTTATCATTGTTATT+AGG - Chr1:93232891-93232910 None:intergenic 20.0%
! ATTAAAGTGGAATCAACAAT+TGG - Chr1:93231706-93231725 None:intergenic 25.0%
! CAAACAAGAAAACGAAATAA+TGG + Chr1:93233391-93233410 MsG0180005555.01.T01:intron 25.0%
! CATAAAATACTCTATTAGAG+AGG + Chr1:93236026-93236045 MsG0180005555.01.T01:three_prime_UTR 25.0%
! CATATTGTGCATTCATAATA+TGG - Chr1:93233169-93233188 None:intergenic 25.0%
! CTATAGAAATCTATTACACA+AGG - Chr1:93235661-93235680 None:intergenic 25.0%
! CTTGTGTAATAGATTTCTAT+AGG + Chr1:93235659-93235678 MsG0180005555.01.T01:exon 25.0%
! TAAAAACATACAGAGGTTTA+TGG - Chr1:93233262-93233281 None:intergenic 25.0%
! TAGAATTATCCCTTAATTGT+TGG + Chr1:93231651-93231670 MsG0180005555.01.T01:intron 25.0%
! TATAATGTTGAGAATCTAGT+TGG - Chr1:93233288-93233307 None:intergenic 25.0%
! TTACTAAAGAGACTAGAATA+TGG + Chr1:93232202-93232221 MsG0180005555.01.T01:intron 25.0%
! TTCATTACATTTATCAGGAA+GGG + Chr1:93235103-93235122 MsG0180005555.01.T01:intron 25.0%
! TTGTTAAATTGGTTAACTCT+AGG - Chr1:93234868-93234887 None:intergenic 25.0%
! TTTCATTACATTTATCAGGA+AGG + Chr1:93235102-93235121 MsG0180005555.01.T01:intron 25.0%
!! CATTATTTCGTTTTCTTGTT+TGG - Chr1:93233393-93233412 None:intergenic 25.0%
!! TGTTTTCGAAAACAGATTTA+AGG + Chr1:93234959-93234978 MsG0180005555.01.T01:intron 25.0%
!!! CTCTCTAATAGAGTATTTTA+TGG - Chr1:93236028-93236047 None:intergenic 25.0%
!!! GCTATTTTTTCCATATCAAA+AGG - Chr1:93231889-93231908 None:intergenic 25.0%
!!! TAACAGAGGTATTGAATTTA+AGG - Chr1:93232909-93232928 None:intergenic 25.0%
!!! TGTGTTATTGACTTCTATAA+GGG + Chr1:93235838-93235857 MsG0180005555.01.T01:intron 25.0%
!!! TTGTGTTATTGACTTCTATA+AGG + Chr1:93235837-93235856 MsG0180005555.01.T01:intron 25.0%
!!! TTTGATTTTCCTTCTGATAA+GGG - Chr1:93232526-93232545 None:intergenic 25.0%
!!! TTTTGATTTTCCTTCTGATA+AGG - Chr1:93232527-93232546 None:intergenic 25.0%
AACTTATGTCTTGGAATTCA+TGG - Chr1:93232970-93232989 None:intergenic 30.0%
AATAAAAGCAACGCATGTTT+GGG + Chr1:93232300-93232319 MsG0180005555.01.T01:intron 30.0%
AATGGAAGAATAGCTATGTT+GGG + Chr1:93235593-93235612 MsG0180005555.01.T01:CDS 30.0%
AATTCATCAAATCATCCCAT+AGG - Chr1:93235983-93236002 None:intergenic 30.0%
AGAGGTGAATGAAGAAAATA+AGG + Chr1:93232741-93232760 MsG0180005555.01.T01:intron 30.0%
AGAGTAATTATTCACTCCTA+TGG + Chr1:93235964-93235983 MsG0180005555.01.T01:three_prime_UTR 30.0%
AGATGTTTCAATTCAAGAGT+TGG - Chr1:93233082-93233101 None:intergenic 30.0%
ATCTATGATATTTGCACTTG+TGG - Chr1:93232674-93232693 None:intergenic 30.0%
ATGTTAGAAGTGAAACATTG+CGG + Chr1:93231932-93231951 MsG0180005555.01.T01:intron 30.0%
CAACAAAATTTGTATCCATC+AGG + Chr1:93233732-93233751 MsG0180005555.01.T01:intron 30.0%
CAACAATTGGTTAGAGAAAA+GGG - Chr1:93231693-93231712 None:intergenic 30.0%
CAACATAGAAATGAAATAGG+TGG + Chr1:93232160-93232179 MsG0180005555.01.T01:intron 30.0%
CAGTAAACACAACAGTTATT+GGG + Chr1:93233642-93233661 MsG0180005555.01.T01:intron 30.0%
GAGTAATTATTCACTCCTAT+GGG + Chr1:93235965-93235984 MsG0180005555.01.T01:three_prime_UTR 30.0%
TCAACAATTGGTTAGAGAAA+AGG - Chr1:93231694-93231713 None:intergenic 30.0%
TCACCAATGTTTGTAACTTT+AGG + Chr1:93232044-93232063 MsG0180005555.01.T01:intron 30.0%
TCACTTGATCCAACAATTAA+GGG - Chr1:93231663-93231682 None:intergenic 30.0%
TCAGTAAACACAACAGTTAT+TGG + Chr1:93233641-93233660 MsG0180005555.01.T01:intron 30.0%
TCTATGATATTTGCACTTGT+GGG - Chr1:93232673-93232692 None:intergenic 30.0%
TCTATTCTCAACTTATGTCT+TGG - Chr1:93232979-93232998 None:intergenic 30.0%
TCTTTCACTAACTGAATCTT+GGG + Chr1:93232706-93232725 MsG0180005555.01.T01:intron 30.0%
TGCATAATGCAACAAGTTAA+TGG + Chr1:93235013-93235032 MsG0180005555.01.T01:intron 30.0%
TGGGCATTAAAGAAGAAAAT+TGG + Chr1:93232319-93232338 MsG0180005555.01.T01:intron 30.0%
TGTATTGCAAAGAATGCTTA+TGG - Chr1:93232142-93232161 None:intergenic 30.0%
TTCATAATTCCCTTATCAGA+AGG + Chr1:93232514-93232533 MsG0180005555.01.T01:intron 30.0%
TTCTTTCACTAACTGAATCT+TGG + Chr1:93232705-93232724 MsG0180005555.01.T01:intron 30.0%
TTGATTCCACTTTAATGACT+TGG + Chr1:93231710-93231729 MsG0180005555.01.T01:intron 30.0%
TTGTTTGATCAAATATCTGG+TGG + Chr1:93235446-93235465 MsG0180005555.01.T01:CDS 30.0%
TTTCTATAGGAACACGATTA+AGG + Chr1:93235672-93235691 MsG0180005555.01.T01:three_prime_UTR 30.0%
! AAGACATAAGTTGAGAATAG+AGG + Chr1:93232978-93232997 MsG0180005555.01.T01:intron 30.0%
! AAGGTTTAGGGTTTATGATT+AGG + Chr1:93235691-93235710 MsG0180005555.01.T01:three_prime_UTR 30.0%
! AGTTTATAATGCTTTTGTCC+TGG - Chr1:93232647-93232666 None:intergenic 30.0%
! GATTAATGAGGCGTTTAATT+GGG - Chr1:93232605-93232624 None:intergenic 30.0%
! GCTTTTACAGAGTATGTTAA+GGG + Chr1:93235629-93235648 MsG0180005555.01.T01:CDS 30.0%
! GGTTTGTTTGATCAAATATC+TGG + Chr1:93235443-93235462 MsG0180005555.01.T01:CDS 30.0%
! GTTTATAATGCTTTTGTCCT+GGG - Chr1:93232646-93232665 None:intergenic 30.0%
! TGTGACAATTACAAGCTTTT+AGG - Chr1:93235814-93235833 None:intergenic 30.0%
!! AGGACAAGGTTGATTTTAAT+GGG - Chr1:93231769-93231788 None:intergenic 30.0%
!! CAAATTCTCTGAAACATCAA+AGG - Chr1:93233043-93233062 None:intergenic 30.0%
!! GTGTTATTGACTTCTATAAG+GGG + Chr1:93235839-93235858 MsG0180005555.01.T01:intron 30.0%
!! TCTTTGATTCCATTTTTCCA+AGG + Chr1:93235515-93235534 MsG0180005555.01.T01:CDS 30.0%
!! TGTTATTGACTTCTATAAGG+GGG + Chr1:93235840-93235859 MsG0180005555.01.T01:intron 30.0%
!! TTGGTTCTAAAAACATACAG+AGG - Chr1:93233269-93233288 None:intergenic 30.0%
!!! ACAAAGTGTTTTTTGAGGAT+AGG - Chr1:93234758-93234777 None:intergenic 30.0%
!!! TGTTATTTTGGATGAGACTA+TGG - Chr1:93232390-93232409 None:intergenic 30.0%
AAAACTCAATGGCATCTGAA+AGG + Chr1:93233921-93233940 MsG0180005555.01.T01:intron 35.0%
AAACTCAATGGCATCTGAAA+GGG + Chr1:93233922-93233941 MsG0180005555.01.T01:intron 35.0%
AAGCGTTCAAAGTATGACTA+TGG - Chr1:93233495-93233514 None:intergenic 35.0%
AATTGAGTTCTCAACACCAT+GGG + Chr1:93234114-93234133 MsG0180005555.01.T01:intron 35.0%
ACACTAACACCTTGGAAAAA+TGG - Chr1:93235527-93235546 None:intergenic 35.0%
ACATACACCTTAGATGGTTA+AGG - Chr1:93231356-93231375 None:intergenic 35.0%
ACCATTACATACACCTTAGA+TGG - Chr1:93231362-93231381 None:intergenic 35.0%
ACTTGTTTCCCTCATTCAAA+GGG - Chr1:93236059-93236078 None:intergenic 35.0%
AGAAATCTATTACACAAGGG+CGG - Chr1:93235657-93235676 None:intergenic 35.0%
AGCGTTCAAAGTATGACTAT+GGG - Chr1:93233494-93233513 None:intergenic 35.0%
AGGAACACGATTAAGGTTTA+GGG + Chr1:93235679-93235698 MsG0180005555.01.T01:three_prime_UTR 35.0%
ATCTATTGGTGCATTACTCA+GGG + Chr1:93232231-93232250 MsG0180005555.01.T01:intron 35.0%
ATCTCAACTCATTTCTTCCA+TGG - Chr1:93234068-93234087 None:intergenic 35.0%
ATGACTCATCTATTGATGTC+AGG - Chr1:93232007-93232026 None:intergenic 35.0%
ATGGTTGTGTTGAAGTGAAT+TGG - Chr1:93232264-93232283 None:intergenic 35.0%
CAAAACAAATCGAAGTTCCT+AGG - Chr1:93233682-93233701 None:intergenic 35.0%
CAATAAAAGCAACGCATGTT+TGG + Chr1:93232299-93232318 MsG0180005555.01.T01:intron 35.0%
CAGAAGGGATGTTGTTAAAT+TGG - Chr1:93234879-93234898 None:intergenic 35.0%
CATACAGAGGTTTATGGTTA+AGG - Chr1:93233256-93233275 None:intergenic 35.0%
CCAATTATAACAGAGTGTAG+TGG + Chr1:93233102-93233121 MsG0180005555.01.T01:intron 35.0%
CCACTACACTCTGTTATAAT+TGG - Chr1:93233105-93233124 None:intergenic 35.0%
CTATGATATTTGCACTTGTG+GGG - Chr1:93232672-93232691 None:intergenic 35.0%
CTTGGAATTCATGGTAACTT+TGG - Chr1:93232961-93232980 None:intergenic 35.0%
GAAACAACACAATTCACGTA+TGG - Chr1:93234038-93234057 None:intergenic 35.0%
GAAATTGCTGAATCAGAATC+AGG - Chr1:93233956-93233975 None:intergenic 35.0%
GAATATGGAACTCCATCTAT+TGG + Chr1:93232217-93232236 MsG0180005555.01.T01:intron 35.0%
GAATGGAAGAATAGCTATGT+TGG + Chr1:93235592-93235611 MsG0180005555.01.T01:CDS 35.0%
GATATGGAAAAAATAGCCAG+CGG + Chr1:93231892-93231911 MsG0180005555.01.T01:intron 35.0%
GCAAGTCAATCTTTCAATTC+TGG - Chr1:93232832-93232851 None:intergenic 35.0%
GCAATGTTTCACTTCTAACA+TGG - Chr1:93231933-93231952 None:intergenic 35.0%
GTCACTTGATCCAACAATTA+AGG - Chr1:93231664-93231683 None:intergenic 35.0%
GTGCATACAATGGTAGAATA+TGG - Chr1:93232583-93232602 None:intergenic 35.0%
GTTTAATTGGGTGCATACAA+TGG - Chr1:93232593-93232612 None:intergenic 35.0%
TAAAATCAACCTTGTCCTCA+AGG + Chr1:93231771-93231790 MsG0180005555.01.T01:intron 35.0%
TAATAGTAGCAACTTCCACA+TGG + Chr1:93231819-93231838 MsG0180005555.01.T01:intron 35.0%
TACTTGTTTCCCTCATTCAA+AGG - Chr1:93236060-93236079 None:intergenic 35.0%
TAGGAACACGATTAAGGTTT+AGG + Chr1:93235678-93235697 MsG0180005555.01.T01:three_prime_UTR 35.0%
TATGTTGGGTTTGATTGCTT+TGG + Chr1:93235607-93235626 MsG0180005555.01.T01:CDS 35.0%
TCAGGTTTGACAAAATGGTT+TGG - Chr1:93232358-93232377 None:intergenic 35.0%
TCTTCTATAAAAGGGAGCAA+TGG - Chr1:93231611-93231630 None:intergenic 35.0%
TGACATCAGGTTTGACAAAA+TGG - Chr1:93232363-93232382 None:intergenic 35.0%
TGACTCATCTATTGATGTCA+GGG - Chr1:93232006-93232025 None:intergenic 35.0%
TGGCCTAAAGTTACAAACAT+TGG - Chr1:93232050-93232069 None:intergenic 35.0%
TGTGTTGAAGTGAATTGGTT+TGG - Chr1:93232259-93232278 None:intergenic 35.0%
TTTACTACTATGCTCACCTT+TGG - Chr1:93235222-93235241 None:intergenic 35.0%
TTTGATCAAATATCTGGTGG+TGG + Chr1:93235449-93235468 MsG0180005555.01.T01:CDS 35.0%
! ACACTGACATTTTTCCAAAC+AGG + Chr1:93233347-93233366 MsG0180005555.01.T01:intron 35.0%
! ACCATCTAAGGTGTATGTAA+TGG + Chr1:93231358-93231377 MsG0180005555.01.T01:intron 35.0%
! GGATTAATGAGGCGTTTAAT+TGG - Chr1:93232606-93232625 None:intergenic 35.0%
! GGCTTTTACAGAGTATGTTA+AGG + Chr1:93235628-93235647 MsG0180005555.01.T01:CDS 35.0%
! GGGAATTATGAACTTGTTCA+TGG - Chr1:93232506-93232525 None:intergenic 35.0%
!! ACAAGGTTGATTTTAATGGG+GGG - Chr1:93231766-93231785 None:intergenic 35.0%
!! ACTCTAAGGACCTTTTGATA+TGG + Chr1:93231876-93231895 MsG0180005555.01.T01:intron 35.0%
!! ATTGTTGGTGGCTATGTTAA+TGG - Chr1:93232283-93232302 None:intergenic 35.0%
!! ATTTTTCCAAGGTGTTAGTG+TGG + Chr1:93235526-93235545 MsG0180005555.01.T01:CDS 35.0%
!! CAATGAAAGCACCAATGTAA+TGG + Chr1:93234317-93234336 MsG0180005555.01.T01:intron 35.0%
!! CTAGGAACTTCGATTTGTTT+TGG + Chr1:93233680-93233699 MsG0180005555.01.T01:intron 35.0%
!! GACAAGGTTGATTTTAATGG+GGG - Chr1:93231767-93231786 None:intergenic 35.0%
!! GACTTGGCTTTGCTTATATT+TGG + Chr1:93231726-93231745 MsG0180005555.01.T01:intron 35.0%
!! GAGGACAAGGTTGATTTTAA+TGG - Chr1:93231770-93231789 None:intergenic 35.0%
!! GGACAAGGTTGATTTTAATG+GGG - Chr1:93231768-93231787 None:intergenic 35.0%
!! GTCTCTAGAACTATTCTCAA+AGG - Chr1:93233147-93233166 None:intergenic 35.0%
!! TATGGCTCTAAGAACTTGTT+GGG - Chr1:93232124-93232143 None:intergenic 35.0%
!! TGGATGTTTTATTGTCCATG+TGG - Chr1:93231837-93231856 None:intergenic 35.0%
!! TTATGGCTCTAAGAACTTGT+TGG - Chr1:93232125-93232144 None:intergenic 35.0%
!!! ACATGCGTTGCTTTTATTGT+TGG - Chr1:93232298-93232317 None:intergenic 35.0%
!!! AGTGTTTTTTGAGGATAGGA+TGG - Chr1:93234754-93234773 None:intergenic 35.0%
!!! ATTGGTTTTGTAGCTGCTAT+GGG + Chr1:93235398-93235417 MsG0180005555.01.T01:CDS 35.0%
!!! CAACGACAAAGTGTTTTTTG+AGG - Chr1:93234763-93234782 None:intergenic 35.0%
!!! CGATTTGTTTTGGAAGGAAA+AGG + Chr1:93233690-93233709 MsG0180005555.01.T01:intron 35.0%
!!! GAACTTCGATTTGTTTTGGA+AGG + Chr1:93233684-93233703 MsG0180005555.01.T01:intron 35.0%
!!! TTGTTTTGGAAGGAAAAGGA+GGG + Chr1:93233694-93233713 MsG0180005555.01.T01:intron 35.0%
!!! TTTGTTTTGGAAGGAAAAGG+AGG + Chr1:93233693-93233712 MsG0180005555.01.T01:intron 35.0%
AAACGCCTCATTAATCCCAT+AGG + Chr1:93232609-93232628 MsG0180005555.01.T01:intron 40.0%
AACCTATACTCGTTCACCAA+AGG + Chr1:93235203-93235222 MsG0180005555.01.T01:CDS 40.0%
AAGCTAGGCATATACACAGA+AGG - Chr1:93234895-93234914 None:intergenic 40.0%
ACAAGTCCATAGATGCAACA+GGG - Chr1:93232459-93232478 None:intergenic 40.0%
ACTCTCATGAACCAAACTAG+TGG + Chr1:93232069-93232088 MsG0180005555.01.T01:intron 40.0%
AGACTATGGCAAATGACATC+AGG - Chr1:93232376-93232395 None:intergenic 40.0%
AGCAAATCGATGGATGCAAA+TGG - Chr1:93234260-93234279 None:intergenic 40.0%
AGCTAGGCATATACACAGAA+GGG - Chr1:93234894-93234913 None:intergenic 40.0%
AGTGTGGAGTCTAAGTCAAA+AGG + Chr1:93235542-93235561 MsG0180005555.01.T01:CDS 40.0%
ATACTTTGAACGCTTCGATC+TGG + Chr1:93233500-93233519 MsG0180005555.01.T01:intron 40.0%
ATCATTCCCTGTTGCATCTA+TGG + Chr1:93232450-93232469 MsG0180005555.01.T01:intron 40.0%
ATCCCACAACTTGAACTCTA+AGG + Chr1:93231862-93231881 MsG0180005555.01.T01:intron 40.0%
ATTCCATAACTCAGCATCTG+AGG - Chr1:93235576-93235595 None:intergenic 40.0%
CAAGGTTGGAGTCAAGATAA+TGG + Chr1:93231789-93231808 MsG0180005555.01.T01:intron 40.0%
CAATTAAAATGGCCACCTCA+TGG + Chr1:93232764-93232783 MsG0180005555.01.T01:intron 40.0%
CAGAGGTTTATGGTTAAGGA+AGG - Chr1:93233252-93233271 None:intergenic 40.0%
CATCTATTGATGTCAGGGTT+AGG - Chr1:93232001-93232020 None:intergenic 40.0%
CATCTATTGGTGCATTACTC+AGG + Chr1:93232230-93232249 MsG0180005555.01.T01:intron 40.0%
CATGGCAAAGCATGATGAAT+GGG - Chr1:93234293-93234312 None:intergenic 40.0%
CATTATACAGTTGCACAGCA+AGG + Chr1:93233301-93233320 MsG0180005555.01.T01:intron 40.0%
CGATCCATGATATTGTAACC+TGG + Chr1:93234187-93234206 MsG0180005555.01.T01:intron 40.0%
CTATGGGATTTCATTCGAAG+TGG - Chr1:93233478-93233497 None:intergenic 40.0%
CTGAGTAATGCACCAATAGA+TGG - Chr1:93232232-93232251 None:intergenic 40.0%
CTTGGGAACAGAAATAGAAG+AGG + Chr1:93232723-93232742 MsG0180005555.01.T01:intron 40.0%
CTTTCAATTCTGGTGACTCA+AGG - Chr1:93232822-93232841 None:intergenic 40.0%
GAATTGAGTTCTCAACACCA+TGG + Chr1:93234113-93234132 MsG0180005555.01.T01:intron 40.0%
GCAAAGCCAAGTCATTAAAG+TGG - Chr1:93231719-93231738 None:intergenic 40.0%
GGAACATATCAAGACACCAA+AGG - Chr1:93231980-93231999 None:intergenic 40.0%
GGAATTCATGGTAACTTTGG+TGG - Chr1:93232958-93232977 None:intergenic 40.0%
GGATCGAATAGAAGCCAAAA+TGG - Chr1:93234173-93234192 None:intergenic 40.0%
GGTACTCTCTAGTAGAGTAA+TGG - Chr1:93231536-93231555 None:intergenic 40.0%
GGTATACACCCTTTGAATGA+GGG + Chr1:93236048-93236067 MsG0180005555.01.T01:three_prime_UTR 40.0%
GTTTATGGTTAAGGAAGGTC+TGG - Chr1:93233247-93233266 None:intergenic 40.0%
TCAGATGCTGAGTTATGGAA+TGG + Chr1:93235575-93235594 MsG0180005555.01.T01:CDS 40.0%
TGAGAGAATCAATGGAAGGT+TGG + Chr1:93235370-93235389 MsG0180005555.01.T01:CDS 40.0%
TGAGATGTACATGCTTGTGT+CGG + Chr1:93234082-93234101 MsG0180005555.01.T01:intron 40.0%
TGCACAATATGTAATGCACC+TGG + Chr1:93233178-93233197 MsG0180005555.01.T01:intron 40.0%
TGGACAATAAAACATCCACC+AGG + Chr1:93231839-93231858 MsG0180005555.01.T01:intron 40.0%
TGGAGCAATTACTCTAACAG+AGG - Chr1:93232923-93232942 None:intergenic 40.0%
TGTATATGCCTAGCTTCAGA+AGG + Chr1:93234899-93234918 MsG0180005555.01.T01:CDS 40.0%
TTATCTTGACTCCAACCTTG+AGG - Chr1:93231789-93231808 None:intergenic 40.0%
TTGCATGCAAACAGAACCTT+TGG + Chr1:93231961-93231980 MsG0180005555.01.T01:intron 40.0%
TTTGGTGAACGAGTATAGGT+TGG - Chr1:93235204-93235223 None:intergenic 40.0%
! AATGGAAGGTTGGCTATGAT+TGG + Chr1:93235380-93235399 MsG0180005555.01.T01:CDS 40.0%
! ACTAGTTTGGTTCATGAGAG+TGG - Chr1:93232070-93232089 None:intergenic 40.0%
! ACTTTTCTCTATCACCTCTG+CGG + Chr1:93233577-93233596 MsG0180005555.01.T01:intron 40.0%
! ATGGGCACAACTTGCTTATT+TGG - Chr1:93234218-93234237 None:intergenic 40.0%
! CTGACATTTTTCCAAACAGG+TGG + Chr1:93233350-93233369 MsG0180005555.01.T01:intron 40.0%
! GCACAACTTGCTTATTTGGA+CGG - Chr1:93234214-93234233 None:intergenic 40.0%
! GCAGATGAGCACAAAGTTTT+CGG + Chr1:93235319-93235338 MsG0180005555.01.T01:intron 40.0%
! TACTGATTGCAATGTTGTCG+AGG - Chr1:93233627-93233646 None:intergenic 40.0%
!! AACCTTCCATTGATTCTCTC+AGG - Chr1:93235371-93235390 None:intergenic 40.0%
!! ACTCTACTAGAGAGTACCAA+AGG + Chr1:93231538-93231557 MsG0180005555.01.T01:intron 40.0%
!! CTCTACTAGAGAGTACCAAA+GGG + Chr1:93231539-93231558 MsG0180005555.01.T01:intron 40.0%
!! CTTGAGAAGTACCACTAGTT+TGG - Chr1:93232083-93232102 None:intergenic 40.0%
!! GGATGGCTTTGTAAAACACT+TGG - Chr1:93234737-93234756 None:intergenic 40.0%
!! GTCCTTAGAGTTCAAGTTGT+GGG - Chr1:93231867-93231886 None:intergenic 40.0%
!! GTGTTGTTTCGATTCAACCA+TGG + Chr1:93234048-93234067 MsG0180005555.01.T01:intron 40.0%
!!! CTGTGGTAGTGGTGTTATTT+TGG - Chr1:93232402-93232421 None:intergenic 40.0%
!!! GATTGGTTTTGTAGCTGCTA+TGG + Chr1:93235397-93235416 MsG0180005555.01.T01:CDS 40.0%
!!! GTGTTTTTGATTTCAACCGC+TGG - Chr1:93231911-93231930 None:intergenic 40.0%
!!! TGCGTTGCTTTTATTGTTGG+TGG - Chr1:93232295-93232314 None:intergenic 40.0%
!!! TTGGTTTTGTAGCTGCTATG+GGG + Chr1:93235399-93235418 MsG0180005555.01.T01:CDS 40.0%
AATGTCAGTGTCAACGCTCA+TGG - Chr1:93233338-93233357 None:intergenic 45.0%
AGCATCAACTGTCGTGTTAG+CGG - Chr1:93233828-93233847 None:intergenic 45.0%
AGCGGATGGAGAAAACTCAA+TGG + Chr1:93233910-93233929 MsG0180005555.01.T01:intron 45.0%
ATCAACCTTGTCCTCAAGGT+TGG + Chr1:93231775-93231794 MsG0180005555.01.T01:intron 45.0%
ATCGTCAACGTCGTCATTGT+TGG + Chr1:93233865-93233884 MsG0180005555.01.T01:intron 45.0%
CAACGCTCATGGTGATATCT+TGG - Chr1:93233327-93233346 None:intergenic 45.0%
CACAAGTCCATAGATGCAAC+AGG - Chr1:93232460-93232479 None:intergenic 45.0%
CACCTGAGAGAATCAATGGA+AGG + Chr1:93235366-93235385 MsG0180005555.01.T01:CDS 45.0%
CACCTTTGGTGAACGAGTAT+AGG - Chr1:93235208-93235227 None:intergenic 45.0%
CAGTTTGTACACCACCTGTT+TGG - Chr1:93233364-93233383 None:intergenic 45.0%
CCATGGCAAAGCATGATGAA+TGG - Chr1:93234294-93234313 None:intergenic 45.0%
CCATTCATCATGCTTTGCCA+TGG + Chr1:93234291-93234310 MsG0180005555.01.T01:intron 45.0%
CCTAGCCTATGGGATTAATG+AGG - Chr1:93232617-93232636 None:intergenic 45.0%
CCTCATTAATCCCATAGGCT+AGG + Chr1:93232614-93232633 MsG0180005555.01.T01:intron 45.0%
CGAAAACATTACCTCAGCCA+TGG - Chr1:93234947-93234966 None:intergenic 45.0%
CGACGTTGACGATGATTCAT+TGG - Chr1:93233858-93233877 None:intergenic 45.0%
CGGACCAGGTTACAATATCA+TGG - Chr1:93234194-93234213 None:intergenic 45.0%
CTGTTGCATCTATGGACTTG+TGG + Chr1:93232458-93232477 MsG0180005555.01.T01:intron 45.0%
GGGAGCAATGGTTAACAAGA+AGG - Chr1:93231599-93231618 None:intergenic 45.0%
GGGTATACACCCTTTGAATG+AGG + Chr1:93236047-93236066 MsG0180005555.01.T01:three_prime_UTR 45.0%
GGGTTTCTCTTCGTATACCT+AGG + Chr1:93233662-93233681 MsG0180005555.01.T01:intron 45.0%
GGTGGAATTCCATGGTTCTT+GGG + Chr1:93235467-93235486 MsG0180005555.01.T01:CDS 45.0%
GTATCCATCAGGTTCGTAGA+AGG + Chr1:93233743-93233762 MsG0180005555.01.T01:intron 45.0%
GTGGAATTCCATGGTTCTTG+GGG + Chr1:93235468-93235487 MsG0180005555.01.T01:CDS 45.0%
GTGGAGATAGCAAATGGACA+GGG + Chr1:93235422-93235441 MsG0180005555.01.T01:CDS 45.0%
TAGACTCCACACTAACACCT+TGG - Chr1:93235535-93235554 None:intergenic 45.0%
TGGGAAAATGCCTAGCCTAT+GGG - Chr1:93232627-93232646 None:intergenic 45.0%
TGGTGCTTTCATTGTCACCA+TGG - Chr1:93234311-93234330 None:intergenic 45.0%
TGGTGGAATTCCATGGTTCT+TGG + Chr1:93235466-93235485 MsG0180005555.01.T01:CDS 45.0%
TGTCCTCAGATGCTGAGTTA+TGG + Chr1:93235570-93235589 MsG0180005555.01.T01:CDS 45.0%
TTTCAGCAGGAGCAAATCGA+TGG - Chr1:93234270-93234289 None:intergenic 45.0%
! AACGTCGTCATTGTTGGTTG+AGG + Chr1:93233871-93233890 MsG0180005555.01.T01:intron 45.0%
! AAGCGCTTCTGGAGAAGTAT+TGG + Chr1:93234137-93234156 MsG0180005555.01.T01:intron 45.0%
! AGACTGGGTATTTTGCGACA+GGG + Chr1:93233543-93233562 MsG0180005555.01.T01:intron 45.0%
! CATGATGAATGGGTTTCAGC+AGG - Chr1:93234283-93234302 None:intergenic 45.0%
! GATGGCTCTCTATGTTTCTG+AGG - Chr1:93233777-93233796 None:intergenic 45.0%
! GGAATGCTAGCCTCAAAGTT+CGG + Chr1:93234920-93234939 MsG0180005555.01.T01:CDS 45.0%
! GTAACTTTGGTGGTCTCTCT+TGG - Chr1:93232948-93232967 None:intergenic 45.0%
! TTGGCGTCGCAAATCCATTT+TGG + Chr1:93234156-93234175 MsG0180005555.01.T01:intron 45.0%
!! ATGAAATAGGTGGACTGTGC+AGG + Chr1:93232170-93232189 MsG0180005555.01.T01:intron 45.0%
!! CTAAGAACTTGTTGGGTGTG+AGG - Chr1:93232117-93232136 None:intergenic 45.0%
!! CTAGCATTCCTTCTGAAGCT+AGG - Chr1:93234910-93234929 None:intergenic 45.0%
!! GAACGAGTATAGGTTGGTTG+TGG - Chr1:93235198-93235217 None:intergenic 45.0%
!! GGTCCTTAGAGTTCAAGTTG+TGG - Chr1:93231868-93231887 None:intergenic 45.0%
!! GTATAGGTTGGTTGTGGTTG+TGG - Chr1:93235192-93235211 None:intergenic 45.0%
!! GTGCTGATGGTGGTGTAATT+GGG - Chr1:93235158-93235177 None:intergenic 45.0%
!! TAGAGAGTACCAAAGGGAGA+GGG + Chr1:93231545-93231564 MsG0180005555.01.T01:intron 45.0%
!! TATCTGGTGGTGGAATTCCA+TGG + Chr1:93235459-93235478 MsG0180005555.01.T01:CDS 45.0%
!!! TGGTTTTGTAGCTGCTATGG+GGG + Chr1:93235400-93235419 MsG0180005555.01.T01:CDS 45.0%
AAGCCGAGCATAATGCTCGA+TGG - Chr1:93234237-93234256 None:intergenic 50.0%
AAGTCTCTCCTCTCTCCCTT+TGG - Chr1:93231557-93231576 None:intergenic 50.0%
AATGGCCACCTCATGGAGTT+TGG + Chr1:93232771-93232790 MsG0180005555.01.T01:intron 50.0%
ACACTTGTCCCCAAGAACCA+TGG - Chr1:93235479-93235498 None:intergenic 50.0%
ACGCTTCGATCTGGTGGTTT+CGG + Chr1:93233509-93233528 MsG0180005555.01.T01:intron 50.0%
AGCCGAGCATAATGCTCGAT+GGG - Chr1:93234236-93234255 None:intergenic 50.0%
AGGGCAGAAAGAGCAACCAA+AGG + Chr1:93235122-93235141 MsG0180005555.01.T01:CDS 50.0%
ATCAAACAGTGACGCAGTCC+AGG - Chr1:93233199-93233218 None:intergenic 50.0%
ATGGGGGTGGAGATAGCAAA+TGG + Chr1:93235416-93235435 MsG0180005555.01.T01:CDS 50.0%
ATTGGGTCTACAGGCACCTT+TGG - Chr1:93235141-93235160 None:intergenic 50.0%
CCAGCACCTGAGAGAATCAA+TGG + Chr1:93235362-93235381 MsG0180005555.01.T01:CDS 50.0%
CCATGACCAGCATTTCAAGC+AGG + Chr1:93234842-93234861 MsG0180005555.01.T01:CDS 50.0%
CCTGCTTGAAATGCTGGTCA+TGG - Chr1:93234845-93234864 None:intergenic 50.0%
CTGGGAAAATGCCTAGCCTA+TGG - Chr1:93232628-93232647 None:intergenic 50.0%
CTTGCTTATTTGGACGGACC+AGG - Chr1:93234208-93234227 None:intergenic 50.0%
CTTTGAACGCTTCGATCTGG+TGG + Chr1:93233503-93233522 MsG0180005555.01.T01:intron 50.0%
GAGAGCCATCGTCAACGATT+CGG + Chr1:93233787-93233806 MsG0180005555.01.T01:intron 50.0%
GATGTACATGCTTGTGTCGG+AGG + Chr1:93234085-93234104 MsG0180005555.01.T01:intron 50.0%
GCTTCCTTCTACGAACCTGA+TGG - Chr1:93233750-93233769 None:intergenic 50.0%
GGTGGAGATAGCAAATGGAC+AGG + Chr1:93235421-93235440 MsG0180005555.01.T01:CDS 50.0%
GGTGGTGTAATTGGGTCTAC+AGG - Chr1:93235150-93235169 None:intergenic 50.0%
TAGCCTCAAAGTTCGGTCCA+TGG + Chr1:93234927-93234946 MsG0180005555.01.T01:CDS 50.0%
TCTAGGCCTGCTTGAAATGC+TGG - Chr1:93234851-93234870 None:intergenic 50.0%
TCTGGTGACTCAAGGCTGAT+GGG - Chr1:93232814-93232833 None:intergenic 50.0%
TGAAAGTCTCCCTCTCCCTT+TGG - Chr1:93234516-93234535 None:intergenic 50.0%
TGACTCCAACCTTGAGGACA+AGG - Chr1:93231783-93231802 None:intergenic 50.0%
TGCCCATCGAGCATTATGCT+CGG + Chr1:93234231-93234250 MsG0180005555.01.T01:intron 50.0%
TGCTTCCGAATCGTTGACGA+TGG - Chr1:93233795-93233814 None:intergenic 50.0%
TTCTGGTGACTCAAGGCTGA+TGG - Chr1:93232815-93232834 None:intergenic 50.0%
! CATAGGCTAGGCATTTTCCC+AGG + Chr1:93232626-93232645 MsG0180005555.01.T01:intron 50.0%
! GAGACTGGGTATTTTGCGAC+AGG + Chr1:93233542-93233561 MsG0180005555.01.T01:intron 50.0%
! GTCGTCATTGTTGGTTGAGG+CGG + Chr1:93233874-93233893 MsG0180005555.01.T01:intron 50.0%
! TTTGGTGGTCTCTCTTGGCA+TGG - Chr1:93232943-93232962 None:intergenic 50.0%
! TTTTGTAGCTGCTATGGGGG+TGG + Chr1:93235403-93235422 MsG0180005555.01.T01:CDS 50.0%
!! AGAGAGTACCAAAGGGAGAG+AGG + Chr1:93231546-93231565 MsG0180005555.01.T01:intron 50.0%
!! CCATTGATTCTCTCAGGTGC+TGG - Chr1:93235365-93235384 None:intergenic 50.0%
!! CTAGAGAGTACCAAAGGGAG+AGG + Chr1:93231544-93231563 MsG0180005555.01.T01:intron 50.0%
!! GAGTTCAAGTTGTGGGATCC+TGG - Chr1:93231860-93231879 None:intergenic 50.0%
!! GGTGCTGATGGTGGTGTAAT+TGG - Chr1:93235159-93235178 None:intergenic 50.0%
!! TAGGTTGGTTGTGGTTGTGG+TGG - Chr1:93235189-93235208 None:intergenic 50.0%
!! TTCAAGTTGTGGGATCCTGG+TGG - Chr1:93231857-93231876 None:intergenic 50.0%
CAAAGTTCGGTCCATGGCTG+AGG + Chr1:93234933-93234952 MsG0180005555.01.T01:CDS 55.0%
CAAGGCTGATGGGAGTGGAA+TGG - Chr1:93232804-93232823 None:intergenic 55.0%
CAGCCATGGACCGAACTTTG+AGG - Chr1:93234933-93234952 None:intergenic 55.0%
CATCAGCAACTACACCGCAG+AGG - Chr1:93233594-93233613 None:intergenic 55.0%
CATGCTTGTGTCGGAGGTTG+TGG + Chr1:93234091-93234110 MsG0180005555.01.T01:intron 55.0%
CCTCGCTAAAGCTGTGGTAG+TGG - Chr1:93232413-93232432 None:intergenic 55.0%
CTCTGTGATTGGCGTCAGGT+GGG + Chr1:93233423-93233442 MsG0180005555.01.T01:intron 55.0%
CTTCGATCTGGTGGTTTCGG+CGG + Chr1:93233512-93233531 MsG0180005555.01.T01:intron 55.0%
GAGTGCCAAACTCCATGAGG+TGG - Chr1:93232779-93232798 None:intergenic 55.0%
GCTGAGTGCCAAACTCCATG+AGG - Chr1:93232782-93232801 None:intergenic 55.0%
GGAGTCCTCTGCTCTGTGAT+TGG + Chr1:93233412-93233431 MsG0180005555.01.T01:intron 55.0%
GTTGGTTGTGGTTGTGGTGG+TGG - Chr1:93235186-93235205 None:intergenic 55.0%
TCCATCCGCTACGCAAATCG+AGG - Chr1:93233900-93233919 None:intergenic 55.0%
TCTGCTCTGTGATTGGCGTC+AGG + Chr1:93233419-93233438 MsG0180005555.01.T01:intron 55.0%
TGACGCCAATCACAGAGCAG+AGG - Chr1:93233420-93233439 None:intergenic 55.0%
TGACTCAAGGCTGATGGGAG+TGG - Chr1:93232809-93232828 None:intergenic 55.0%
! ACCACAGCTTTAGCGAGGCT+TGG + Chr1:93232415-93232434 MsG0180005555.01.T01:intron 55.0%
! CCACAGCTTTAGCGAGGCTT+GGG + Chr1:93232416-93232435 MsG0180005555.01.T01:intron 55.0%
! CCACTACCACAGCTTTAGCG+AGG + Chr1:93232410-93232429 MsG0180005555.01.T01:intron 55.0%
! CTGGGTATTTTGCGACAGGG+TGG + Chr1:93233546-93233565 MsG0180005555.01.T01:intron 55.0%
!! AACACCATGGGAAGCGCTTC+TGG + Chr1:93234126-93234145 MsG0180005555.01.T01:intron 55.0%
!! TGTGGTTGTGGTGGTGGAGT+TGG - Chr1:93235180-93235199 None:intergenic 55.0%
!! TTCTCCAGAAGCGCTTCCCA+TGG - Chr1:93234133-93234152 None:intergenic 55.0%
CCCAAGCCTCGCTAAAGCTG+TGG - Chr1:93232419-93232438 None:intergenic 60.0%
GCTCTGTGATTGGCGTCAGG+TGG + Chr1:93233422-93233441 MsG0180005555.01.T01:intron 60.0%
TGATTGGCGTCAGGTGGGTG+AGG + Chr1:93233428-93233447 MsG0180005555.01.T01:intron 60.0%
! GCCTCGATTTGCGTAGCGGA+TGG + Chr1:93233896-93233915 MsG0180005555.01.T01:intron 60.0%
!! GGTGGAGTTGGTGCTGATGG+TGG - Chr1:93235168-93235187 None:intergenic 60.0%
!! GGTGGTGGAGTTGGTGCTGA+TGG - Chr1:93235171-93235190 None:intergenic 60.0%
CGATCTGGTGGTTTCGGCGG+CGG + Chr1:93233515-93233534 MsG0180005555.01.T01:intron 65.0%
TTGGCGTCAGGTGGGTGAGG+CGG + Chr1:93233431-93233450 MsG0180005555.01.T01:intron 65.0%
! GGCGGCCTCGATTTGCGTAG+CGG + Chr1:93233892-93233911 MsG0180005555.01.T01:intron 65.0%
GTGAGGCGGTGGTCGTGGCA+TGG + Chr1:93233445-93233464 MsG0180005555.01.T01:intron 70.0%
TCTGGTGGTTTCGGCGGCGG+AGG + Chr1:93233518-93233537 MsG0180005555.01.T01:intron 70.0%
GCGTCAGGTGGGTGAGGCGG+TGG + Chr1:93233434-93233453 MsG0180005555.01.T01:intron 75.0%
GGTGGGTGAGGCGGTGGTCG+TGG + Chr1:93233440-93233459 MsG0180005555.01.T01:intron 75.0%
TCGGCGGCGGAGGCGAGACT+GGG + Chr1:93233528-93233547 MsG0180005555.01.T01:intron 75.0%
TTCGGCGGCGGAGGCGAGAC+TGG + Chr1:93233527-93233546 MsG0180005555.01.T01:intron 75.0%
Chromosome Type Strat End Strand Name
Chr1 gene 93231351 93236084 93231351 ID=MsG0180005555.01;Name=MsG0180005555.01
Chr1 mRNA 93231351 93236084 93231351 ID=MsG0180005555.01.T01;Parent=MsG0180005555.01;Name=MsG0180005555.01.T01;_AED=0.50;_eAED=0.50;_QI=109|1|1|1|0.5|0.2|5|247|199
Chr1 exon 93231351 93231373 93231351 ID=MsG0180005555.01.T01:exon:16060;Parent=MsG0180005555.01.T01
Chr1 exon 93234719 93234954 93234719 ID=MsG0180005555.01.T01:exon:16061;Parent=MsG0180005555.01.T01
Chr1 exon 93235120 93235224 93235120 ID=MsG0180005555.01.T01:exon:16062;Parent=MsG0180005555.01.T01
Chr1 exon 93235323 93235747 93235323 ID=MsG0180005555.01.T01:exon:16063;Parent=MsG0180005555.01.T01
Chr1 exon 93235918 93236084 93235918 ID=MsG0180005555.01.T01:exon:16064;Parent=MsG0180005555.01.T01
Chr1 five_prime_UTR 93231351 93231373 93231351 ID=MsG0180005555.01.T01:five_prime_utr;Parent=MsG0180005555.01.T01
Chr1 five_prime_UTR 93234719 93234804 93234719 ID=MsG0180005555.01.T01:five_prime_utr;Parent=MsG0180005555.01.T01
Chr1 CDS 93234805 93234954 93234805 ID=MsG0180005555.01.T01:cds;Parent=MsG0180005555.01.T01
Chr1 CDS 93235120 93235224 93235120 ID=MsG0180005555.01.T01:cds;Parent=MsG0180005555.01.T01
Chr1 CDS 93235323 93235667 93235323 ID=MsG0180005555.01.T01:cds;Parent=MsG0180005555.01.T01
Chr1 three_prime_UTR 93235668 93235747 93235668 ID=MsG0180005555.01.T01:three_prime_utr;Parent=MsG0180005555.01.T01
Chr1 three_prime_UTR 93235918 93236084 93235918 ID=MsG0180005555.01.T01:three_prime_utr;Parent=MsG0180005555.01.T01
Gene Sequence

>MsG0180005555.01.T01

ATGGCTGTTTCATCTTGTCAATCTATCATGTCAAGCTCCATGACCAGCATTTCAAGCAGGCCTAGAGTTAACCAATTTAACAACATCCCTTCTGTGTATATGCCTAGCTTCAGAAGGAATGCTAGCCTCAAAGTTCGGTCCATGGCTGAGGAAGGGCAGAAAGAGCAACCAAAGGTGCCTGTAGACCCAATTACACCACCATCAGCACCAACTCCACCACCACAACCACAACCAACCTATACTCGTTCACCAAAGATGAGCACAAAGTTTTCGGATTTGATGGCATTTGGTGGGCCAGCACCTGAGAGAATCAATGGAAGGTTGGCTATGATTGGTTTTGTAGCTGCTATGGGGGTGGAGATAGCAAATGGACAGGGTTTGTTTGATCAAATATCTGGTGGTGGAATTCCATGGTTCTTGGGGACAAGTGTGTTGTTGTCACTTGCTTCTTTGATTCCATTTTTCCAAGGTGTTAGTGTGGAGTCTAAGTCAAAAGGTGTCATGTCCTCAGATGCTGAGTTATGGAATGGAAGAATAGCTATGTTGGGTTTGATTGCTTTGGCTTTTACAGAGTATGTTAAGGGTACCGCCCTTGTGTAA

Protein sequence

>MsG0180005555.01.T01

MAVSSCQSIMSSSMTSISSRPRVNQFNNIPSVYMPSFRRNASLKVRSMAEEGQKEQPKVPVDPITPPSAPTPPPQPQPTYTRSPKMSTKFSDLMAFGGPAPERINGRLAMIGFVAAMGVEIANGQGLFDQISGGGIPWFLGTSVLLSLASLIPFFQGVSVESKSKGVMSSDAELWNGRIAMLGLIALAFTEYVKGTALV*