AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0580024138.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580024138.01.T01 MTR_5g006300 86.400 250 15 4 68 311 45 281 9.11e-151 424
MsG0580024138.01.T01 MTR_5g006290 77.619 210 42 1 63 272 47 251 3.76e-119 344
MsG0580024138.01.T01 MTR_5g006290 77.619 210 42 1 63 272 47 251 2.20e-118 343
MsG0580024138.01.T01 MTR_1g104500 70.000 210 57 2 63 272 47 250 5.50e-103 304
MsG0580024138.01.T01 MTR_2g099720 44.025 159 82 3 63 220 89 241 9.02e-38 138
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580024138.01.T01 AT4G14930 56.944 216 80 5 63 272 52 260 5.19e-79 243
MsG0580024138.01.T01 AT4G14930 56.944 216 80 5 63 272 52 260 9.55e-79 243
MsG0580024138.01.T01 AT1G72880 42.941 170 84 4 63 231 99 256 2.00e-36 135
MsG0580024138.01.T01 AT1G72880 42.941 170 84 4 63 231 99 256 2.00e-36 135

Find 74 sgRNAs with CRISPR-Local

Find 210 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTTGCTTCCTTTGCGGTTTC+TGG 0.080018 5:-1283458 MsG0580024138.01.T01:intron
AACTGTTGAAATGTCTTTAT+TGG 0.132669 5:+1281375 None:intergenic
GGTAGTCAGTGGCATAAATA+AGG 0.269395 5:-1283289 MsG0580024138.01.T01:CDS
GTCATATCCGATGACATTAT+TGG 0.278609 5:+1282258 None:intergenic
CCATCACTCCATTATTATCT+TGG 0.283012 5:-1281399 MsG0580024138.01.T01:CDS
TCAACTTGTTTGACAGCAAC+AGG 0.315263 5:+1283494 None:intergenic
ATTTGTATGTCCAGGGTTAA+AGG 0.329046 5:-1282599 MsG0580024138.01.T01:intron
ATTCTTTATATCAACCAGTA+TGG 0.333966 5:+1282517 None:intergenic
GTTGGCGTGCACTCAGTAAC+TGG 0.366741 5:-1284793 MsG0580024138.01.T01:CDS
CTCGCAAATAAAAGATGTTC+AGG 0.372141 5:+1282186 None:intergenic
GGTAAAAGTATCTTTAAGAT+TGG 0.377853 5:-1282312 MsG0580024138.01.T01:CDS
ACCAGTATGGTGCTTATGAT+TGG 0.395152 5:+1282530 None:intergenic
GAAATTGAAATGGCTGGGGC+TGG 0.397804 5:-1284658 MsG0580024138.01.T01:CDS
ACTCAGTAACTGGACATAAT+TGG 0.398875 5:-1284783 MsG0580024138.01.T01:CDS
GTCAAACAAGTTGACATTCA+TGG 0.403910 5:-1283485 MsG0580024138.01.T01:CDS
AATATACCAGTCATATGAAA+TGG 0.404590 5:+1282839 None:intergenic
GTGTGTGGGTACTGTAATAA+TGG 0.422432 5:-1284685 MsG0580024138.01.T01:CDS
TCCAATCATAAGCACCATAC+TGG 0.425888 5:-1282531 MsG0580024138.01.T01:CDS
TGGAACCGTTGCTTCCTTTG+CGG 0.426141 5:-1283465 MsG0580024138.01.T01:CDS
CATCACTCCATTATTATCTT+GGG 0.429733 5:-1281398 MsG0580024138.01.T01:CDS
AGCAGACTGCTGCTAGTGCT+TGG 0.433566 5:+1281441 None:intergenic
TTATGGTTAGCAACATCGTT+TGG 0.448421 5:+1282455 None:intergenic
TAATTGGAGACCTGGCAGTT+TGG 0.454756 5:-1284767 MsG0580024138.01.T01:CDS
CAATCTCCATTTCATATGAC+TGG 0.460076 5:-1282845 MsG0580024138.01.T01:intron
TAATGGAATGGAAATTGAAA+TGG 0.461116 5:-1284668 MsG0580024138.01.T01:CDS
ATTTCCTACAACACCTGATC+TGG 0.463342 5:-1283310 MsG0580024138.01.T01:CDS
ACTACCAGATCAGGTGTTGT+AGG 0.466354 5:+1283306 None:intergenic
GTTTACTCAGGCACTGTAGC+TGG 0.466587 5:-1282900 MsG0580024138.01.T01:intron
AAATTGAAATGGCTGGGGCT+GGG 0.475625 5:-1284657 MsG0580024138.01.T01:intron
TTATTGGCCCAAGATAATAA+TGG 0.478496 5:+1281391 None:intergenic
GGAATGGAAATTGAAATGGC+TGG 0.481108 5:-1284664 MsG0580024138.01.T01:CDS
AAAGTATCTTTAAGATTGGA+TGG 0.485897 5:-1282308 MsG0580024138.01.T01:CDS
GCAGACTGCTGCTAGTGCTT+GGG 0.488125 5:+1281442 None:intergenic
GGGTTACAAGCTAACAAGGC+AGG 0.490829 5:-1282334 MsG0580024138.01.T01:CDS
GTGGATTCAACCAAACTGCC+AGG 0.499366 5:+1284757 None:intergenic
TTCGTTCTTTGCAGGTACTC+CGG 0.499552 5:-1283367 MsG0580024138.01.T01:intron
AGGTGTATCAGTATCAGTAT+TGG 0.502952 5:+1282236 None:intergenic
GTAGTCAGTGGCATAAATAA+GGG 0.514796 5:-1283288 MsG0580024138.01.T01:CDS
CCGGCTGATTGCACTTCTCT+CGG 0.516037 5:-1283348 MsG0580024138.01.T01:CDS
GAATGGAAATTGAAATGGCT+GGG 0.518095 5:-1284663 MsG0580024138.01.T01:CDS
CCGTTAGCCATTGTGTGACA+TGG 0.521413 5:-1283523 MsG0580024138.01.T01:CDS
ACACACACCAAAGAAAATTC+AGG 0.522320 5:+1284706 None:intergenic
AAACGATGTTGCTAACCATA+AGG 0.528344 5:-1282453 MsG0580024138.01.T01:intron
TCATATGAAATGGAGATTGA+AGG 0.532405 5:+1282849 None:intergenic
TGAAGGGATATCATTAAAGA+AGG 0.534821 5:+1282866 None:intergenic
CATATGAAATGGAGATTGAA+GGG 0.535556 5:+1282850 None:intergenic
CACTGTAGCTGGAGCTCGAG+AGG 0.542909 5:-1282889 MsG0580024138.01.T01:CDS
ATGCCACTGACTACCAGATC+AGG 0.544823 5:+1283297 None:intergenic
TGTTGTAGGAAATAGTGCTC+TGG 0.558048 5:+1283320 None:intergenic
AAAATGTGAACAATGTTCAC+AGG 0.560702 5:-1284832 None:intergenic
CCGAGAGAAGTGCAATCAGC+CGG 0.562865 5:+1283348 None:intergenic
CCAAGATAATAATGGAGTGA+TGG 0.564660 5:+1281399 None:intergenic
GGAGCAAAACATCGAACAGT+TGG 0.571934 5:-1284811 MsG0580024138.01.T01:CDS
TGGGTACTGTAATAATGGAA+TGG 0.583436 5:-1284680 MsG0580024138.01.T01:CDS
TAAAGAATCAAAGCTACCCT+GGG 0.585985 5:-1282502 MsG0580024138.01.T01:CDS
AGAAGGACCAATAATGTCAT+CGG 0.592757 5:-1282265 MsG0580024138.01.T01:CDS
ATAAAGAATCAAAGCTACCC+TGG 0.599661 5:-1282503 MsG0580024138.01.T01:CDS
CCATGTCACACAATGGCTAA+CGG 0.601876 5:+1283523 None:intergenic
ATAAATAAGGGTAGCAACTG+CGG 0.609893 5:-1283276 MsG0580024138.01.T01:CDS
AAAAGGGTTACAAGCTAACA+AGG 0.613958 5:-1282338 MsG0580024138.01.T01:intron
CAAGTCACCTCTCAGACAGA+AGG 0.626825 5:-1282282 MsG0580024138.01.T01:CDS
ACTGGACATAATTGGAGACC+TGG 0.630669 5:-1284775 MsG0580024138.01.T01:CDS
GGTTACAAGCTAACAAGGCA+GGG 0.632843 5:-1282333 MsG0580024138.01.T01:CDS
TATTGGTCCTTCTGTCTGAG+AGG 0.645859 5:+1282275 None:intergenic
AGAAACCGCAAAGGAAGCAA+CGG 0.646643 5:+1283460 None:intergenic
AATGGAAATTGAAATGGCTG+GGG 0.652068 5:-1284662 MsG0580024138.01.T01:CDS
CAACTTGTTTGACAGCAACA+GGG 0.653972 5:+1283495 None:intergenic
AGTGATGGCTTGCATAGCGG+AGG 0.660288 5:+1281414 None:intergenic
GCAGCAAGAGCAAAGTCGTG+TGG 0.670936 5:+1282566 None:intergenic
ACACCTGATCTGGTAGTCAG+TGG 0.675568 5:-1283300 MsG0580024138.01.T01:CDS
GGTGAAGCCATGTCACACAA+TGG 0.678364 5:+1283516 None:intergenic
CAACTAACCAGAAACCGCAA+AGG 0.682214 5:+1283451 None:intergenic
GTATCTTTAAGATTGGATGG+AGG 0.682656 5:-1282305 MsG0580024138.01.T01:CDS
TGGAGTGATGGCTTGCATAG+CGG 0.682924 5:+1281411 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATCTTTTATAACTAATTTAT+TGG - Chr5:1283791-1283810 MsG0580024138.01.T01:intron 10.0%
!!! TAAGATTTTAAGTAAAAAAA+AGG + Chr5:1284033-1284052 None:intergenic 10.0%
!! AAACTTAAATATCATTTAGT+TGG + Chr5:1281680-1281699 None:intergenic 15.0%
!! ACAATTATAAGCTAAAAAAT+TGG + Chr5:1283424-1283443 None:intergenic 15.0%
!! ATTATTACATCATTATTCAT+TGG + Chr5:1284284-1284303 None:intergenic 15.0%
!! TAAATAAAGAATAATACCTT+AGG + Chr5:1282104-1282123 None:intergenic 15.0%
!! TTAAGTAAAAAAAAGGAAAA+AGG + Chr5:1284026-1284045 None:intergenic 15.0%
!! TTATGTAGAACTAAAAAAAA+GGG + Chr5:1284106-1284125 None:intergenic 15.0%
!! TTATTACATCATTATTCATT+GGG + Chr5:1284283-1284302 None:intergenic 15.0%
!! TTGAAATAACATTATATGTT+TGG - Chr5:1281729-1281748 MsG0580024138.01.T01:intron 15.0%
!!! CTTTTTGTTAAAAGTTATTT+CGG - Chr5:1283186-1283205 MsG0580024138.01.T01:intron 15.0%
!!! TATTTTCCTATTAATAATTG+TGG - Chr5:1281755-1281774 MsG0580024138.01.T01:intron 15.0%
!!! TGTATTTTAAACTAACATAA+AGG + Chr5:1282539-1282558 None:intergenic 15.0%
!! AAATTTCATAAAACAACTAC+AGG + Chr5:1281705-1281724 None:intergenic 20.0%
!! AATATTCAGTAAATCATAAG+AGG + Chr5:1283165-1283184 None:intergenic 20.0%
!! ACTTATTACAATATACCTTA+TGG + Chr5:1283735-1283754 None:intergenic 20.0%
!! ATATACAAGTAAAATTGCAT+AGG - Chr5:1282163-1282182 MsG0580024138.01.T01:intron 20.0%
!! ATATTCAGTAAATCATAAGA+GGG + Chr5:1283164-1283183 None:intergenic 20.0%
!! ATTCTTTAATCTCAATCAAA+CGG + Chr5:1282406-1282425 None:intergenic 20.0%
!! GTTATGTAGAACTAAAAAAA+AGG + Chr5:1284107-1284126 None:intergenic 20.0%
!! TATTACATCATTATTCATTG+GGG + Chr5:1284282-1284301 None:intergenic 20.0%
!! TTCTTCTTGTGTATAATATA+TGG - Chr5:1281980-1281999 MsG0580024138.01.T01:intron 20.0%
!! TTTATTATATGACATGTAGA+CGG - Chr5:1282568-1282587 MsG0580024138.01.T01:CDS 20.0%
!! TTTCATTCATACTAATGAAT+TGG + Chr5:1281919-1281938 None:intergenic 20.0%
!!! AATAATCTCTTAACTTTTGT+AGG - Chr5:1284298-1284317 MsG0580024138.01.T01:intron 20.0%
!!! CTTTATTTAAAAATTTGGTG+TGG - Chr5:1282115-1282134 MsG0580024138.01.T01:intron 20.0%
!!! TACTATTTTTGACCATTTAA+AGG - Chr5:1283546-1283565 MsG0580024138.01.T01:intron 20.0%
!!! TCAATAGAAAATTTTTCAAC+AGG + Chr5:1283065-1283084 None:intergenic 20.0%
!!! TTCCATCATTTTGATATATT+TGG + Chr5:1282142-1282161 None:intergenic 20.0%
! AACTGTTGAAATGTCTTTAT+TGG + Chr5:1284798-1284817 None:intergenic 25.0%
! AAGATGCCACAATTATTAAT+AGG + Chr5:1281764-1281783 None:intergenic 25.0%
! AATATACCAGTCATATGAAA+TGG + Chr5:1283334-1283353 None:intergenic 25.0%
! ACATACAAATAGCCTTTAAA+TGG + Chr5:1283561-1283580 None:intergenic 25.0%
! ACTGATACACCTAAAAATTA+TGG - Chr5:1283945-1283964 MsG0580024138.01.T01:intron 25.0%
! ATATTCAAAAAACATTTCCC+AGG + Chr5:1283688-1283707 None:intergenic 25.0%
! ATTCTTTATATCAACCAGTA+TGG + Chr5:1283656-1283675 None:intergenic 25.0%
! CATTTCAAATTTCAAGGAAA+TGG + Chr5:1283140-1283159 None:intergenic 25.0%
! CTGTATTAAAAAAAGACCTA+AGG - Chr5:1282085-1282104 MsG0580024138.01.T01:intron 25.0%
! CTTTATTAAGAAAAGACCTT+AGG - Chr5:1282042-1282061 MsG0580024138.01.T01:intron 25.0%
! GACCAAATATATCAAAATGA+TGG - Chr5:1282137-1282156 MsG0580024138.01.T01:intron 25.0%
! GACTAAGACATTAAAAAGAT+TGG + Chr5:1282314-1282333 None:intergenic 25.0%
! GTGAGAGAATCAATAAAAAT+TGG + Chr5:1281890-1281909 None:intergenic 25.0%
! TAAGAAGCTATTGTTATAGA+AGG + Chr5:1283525-1283544 None:intergenic 25.0%
! TAATGGAATGGAAATTGAAA+TGG - Chr5:1281502-1281521 MsG0580024138.01.T01:intron 25.0%
! TATTCAAAAAACATTTCCCA+GGG + Chr5:1283687-1283706 None:intergenic 25.0%
!! ATCTATCAGTTTCAATTTTG+TGG + Chr5:1281435-1281454 None:intergenic 25.0%
!! ATTTTGCATTTCATAGCAAA+TGG - Chr5:1283014-1283033 MsG0580024138.01.T01:intron 25.0%
!! TCTTAACTTTTGTAGGTAAA+AGG - Chr5:1284305-1284324 MsG0580024138.01.T01:intron 25.0%
!!! AAAGTATCTTTAAGATTGGA+TGG - Chr5:1283862-1283881 MsG0580024138.01.T01:intron 25.0%
!!! GGTAAAAGTATCTTTAAGAT+TGG - Chr5:1283858-1283877 MsG0580024138.01.T01:intron 25.0%
AATGAATGTCTCGAGAATTA+TGG - Chr5:1283456-1283475 MsG0580024138.01.T01:intron 30.0%
CACTGCTTAAAGTCTAAAAA+AGG + Chr5:1282962-1282981 None:intergenic 30.0%
CATATGAAATGGAGATTGAA+GGG + Chr5:1283323-1283342 None:intergenic 30.0%
CATCACTCCATTATTATCTT+GGG - Chr5:1284772-1284791 MsG0580024138.01.T01:CDS 30.0%
CTAAACAATCCTAAACTACT+TGG - Chr5:1284222-1284241 MsG0580024138.01.T01:intron 30.0%
GAATATGTTGTAATAGACTG+AGG - Chr5:1284141-1284160 MsG0580024138.01.T01:intron 30.0%
GATGTGAATTCTTTCATGTT+TGG - Chr5:1282467-1282486 MsG0580024138.01.T01:CDS 30.0%
TCAAAAGTTGTTGTATCACT+TGG + Chr5:1282197-1282216 None:intergenic 30.0%
TCATATGAAATGGAGATTGA+AGG + Chr5:1283324-1283343 None:intergenic 30.0%
TCATCATCTGTTCATAACTT+AGG + Chr5:1283112-1283131 None:intergenic 30.0%
TCTATATGATCTTGATCCAA+CGG - Chr5:1282439-1282458 MsG0580024138.01.T01:intron 30.0%
TGAAGGGATATCATTAAAGA+AGG + Chr5:1283307-1283326 None:intergenic 30.0%
TGAGCTTATGAAAATGGAAA+TGG + Chr5:1282760-1282779 None:intergenic 30.0%
TGCTTAAAGTCTAAAAAAGG+CGG + Chr5:1282959-1282978 None:intergenic 30.0%
TGTAGAACTAAAAAAAAGGG+TGG + Chr5:1284103-1284122 None:intergenic 30.0%
TTAAGAAAAGACCTTAGGTT+AGG - Chr5:1282047-1282066 MsG0580024138.01.T01:intron 30.0%
TTATTGGCCCAAGATAATAA+TGG + Chr5:1284782-1284801 None:intergenic 30.0%
! ATATTTTCAACATGCTTCTG+TGG - Chr5:1283349-1283368 MsG0580024138.01.T01:CDS 30.0%
!! TGATACAACAACTTTTGAGA+TGG - Chr5:1282199-1282218 MsG0580024138.01.T01:CDS 30.0%
!! TTTGTGTGTTACTTGTGTAT+TGG - Chr5:1281564-1281583 MsG0580024138.01.T01:intron 30.0%
!!! CTTGCAACAATTTTTGAAAC+AGG + Chr5:1282506-1282525 None:intergenic 30.0%
AAAAGGGTTACAAGCTAACA+AGG - Chr5:1283832-1283851 MsG0580024138.01.T01:intron 35.0%
AAACGATGTTGCTAACCATA+AGG - Chr5:1283717-1283736 MsG0580024138.01.T01:intron 35.0%
AAAGGCTATTTGTATGTCCA+GGG - Chr5:1283564-1283583 MsG0580024138.01.T01:intron 35.0%
AATGGAAATTGAAATGGCTG+GGG - Chr5:1281508-1281527 MsG0580024138.01.T01:intron 35.0%
AATGTCCATCCAAGTAGTTT+AGG + Chr5:1284234-1284253 None:intergenic 35.0%
ACAATCCTAAACTACTTGGA+TGG - Chr5:1284226-1284245 MsG0580024138.01.T01:intron 35.0%
ACACACACCAAAGAAAATTC+AGG + Chr5:1281467-1281486 None:intergenic 35.0%
ACTCAGTAACTGGACATAAT+TGG - Chr5:1281387-1281406 MsG0580024138.01.T01:CDS 35.0%
AGAAGGACCAATAATGTCAT+CGG - Chr5:1283905-1283924 MsG0580024138.01.T01:intron 35.0%
AGGTGTATCAGTATCAGTAT+TGG + Chr5:1283937-1283956 None:intergenic 35.0%
ATAAAGAATCAAAGCTACCC+TGG - Chr5:1283667-1283686 MsG0580024138.01.T01:intron 35.0%
ATAAATAAGGGTAGCAACTG+CGG - Chr5:1282894-1282913 MsG0580024138.01.T01:intron 35.0%
ATGCAAATTCAACTAGTGCT+AGG + Chr5:1284639-1284658 None:intergenic 35.0%
ATTACTCTTTCCTTTAACCC+TGG + Chr5:1283584-1283603 None:intergenic 35.0%
ATTTGTATGTCCAGGGTTAA+AGG - Chr5:1283571-1283590 MsG0580024138.01.T01:intron 35.0%
CAATCTCCATTTCATATGAC+TGG - Chr5:1283325-1283344 MsG0580024138.01.T01:CDS 35.0%
CCATCACTCCATTATTATCT+TGG - Chr5:1284771-1284790 MsG0580024138.01.T01:CDS 35.0%
CTATATGAATTCGATCACCA+CGG + Chr5:1282367-1282386 None:intergenic 35.0%
CTCGCAAATAAAAGATGTTC+AGG + Chr5:1283987-1284006 None:intergenic 35.0%
CTTAAAGTCTAAAAAAGGCG+GGG + Chr5:1282957-1282976 None:intergenic 35.0%
GAATGGAAATTGAAATGGCT+GGG - Chr5:1281507-1281526 MsG0580024138.01.T01:intron 35.0%
GAGGGTCATTTCAAATTTCA+AGG + Chr5:1283146-1283165 None:intergenic 35.0%
GCTTAAAGTCTAAAAAAGGC+GGG + Chr5:1282958-1282977 None:intergenic 35.0%
GTAGTCAGTGGCATAAATAA+GGG - Chr5:1282882-1282901 MsG0580024138.01.T01:CDS 35.0%
GTCATATCCGATGACATTAT+TGG + Chr5:1283915-1283934 None:intergenic 35.0%
TAAAGAATCAAAGCTACCCT+GGG - Chr5:1283668-1283687 MsG0580024138.01.T01:intron 35.0%
TAAAGGCTATTTGTATGTCC+AGG - Chr5:1283563-1283582 MsG0580024138.01.T01:intron 35.0%
TAAGAATACCACCTAACCTA+AGG + Chr5:1282061-1282080 None:intergenic 35.0%
TACAGATTACACATCCTTGA+AGG - Chr5:1284355-1284374 MsG0580024138.01.T01:intron 35.0%
TCATTATTCATTGGGGAAAG+AGG + Chr5:1284275-1284294 None:intergenic 35.0%
TGAGCTTGAGCTTATGAAAA+TGG + Chr5:1282766-1282785 None:intergenic 35.0%
TTAGACTCACAGAACAACTA+TGG + Chr5:1283238-1283257 None:intergenic 35.0%
TTATGGTTAGCAACATCGTT+TGG + Chr5:1283718-1283737 None:intergenic 35.0%
TTGTAGCCATTCCTCAAAAT+AGG + Chr5:1284522-1284541 None:intergenic 35.0%
! AGATTGTCAGACCTATTTTG+AGG - Chr5:1284508-1284527 MsG0580024138.01.T01:intron 35.0%
! CCAAGATAATAATGGAGTGA+TGG + Chr5:1284774-1284793 None:intergenic 35.0%
! GATGACGTGCCATAATTTTT+AGG + Chr5:1283957-1283976 None:intergenic 35.0%
! GTCAAACAAGTTGACATTCA+TGG - Chr5:1282685-1282704 MsG0580024138.01.T01:intron 35.0%
! TGGGTACTGTAATAATGGAA+TGG - Chr5:1281490-1281509 MsG0580024138.01.T01:intron 35.0%
!! AAAAAGATTGGTGTTGACCA+GGG + Chr5:1282302-1282321 None:intergenic 35.0%
!! ACATCTTTTATTTGCGAGAG+AGG - Chr5:1283989-1284008 MsG0580024138.01.T01:intron 35.0%
!! GACTATTTTTCGTTCTTTGC+AGG - Chr5:1282795-1282814 MsG0580024138.01.T01:intron 35.0%
!! GTATCTTTAAGATTGGATGG+AGG - Chr5:1283865-1283884 MsG0580024138.01.T01:intron 35.0%
!! TAAAAAGATTGGTGTTGACC+AGG + Chr5:1282303-1282322 None:intergenic 35.0%
!!! AACAACTTTTGAGATGGATG+AGG - Chr5:1282205-1282224 MsG0580024138.01.T01:CDS 35.0%
!!! ACAACTTTTGAGATGGATGA+GGG - Chr5:1282206-1282225 MsG0580024138.01.T01:CDS 35.0%
ACCAGTATGGTGCTTATGAT+TGG + Chr5:1283643-1283662 None:intergenic 40.0%
ACCTGGTTTACTTACCTATC+AGG + Chr5:1282343-1282362 None:intergenic 40.0%
AGAAAAGACCTTAGGTTAGG+TGG - Chr5:1282050-1282069 MsG0580024138.01.T01:intron 40.0%
AGATTACACATCCTTGAAGG+CGG - Chr5:1284358-1284377 MsG0580024138.01.T01:intron 40.0%
ATCTAGATTCTCGACTAGCA+TGG + Chr5:1284670-1284689 None:intergenic 40.0%
ATTTCCTACAACACCTGATC+TGG - Chr5:1282860-1282879 MsG0580024138.01.T01:CDS 40.0%
GAATTCACATCAATGACCGT+TGG + Chr5:1282458-1282477 None:intergenic 40.0%
GGAATGGAAATTGAAATGGC+TGG - Chr5:1281506-1281525 MsG0580024138.01.T01:intron 40.0%
GGTAGTCAGTGGCATAAATA+AGG - Chr5:1282881-1282900 MsG0580024138.01.T01:CDS 40.0%
TCCAATCATAAGCACCATAC+TGG - Chr5:1283639-1283658 MsG0580024138.01.T01:intron 40.0%
TCCTGATAGGTAAGTAAACC+AGG - Chr5:1282339-1282358 MsG0580024138.01.T01:intron 40.0%
TGCCTGAGTAAACACTGAAA+GGG + Chr5:1283263-1283282 None:intergenic 40.0%
TGTTGTAGGAAATAGTGCTC+TGG + Chr5:1282853-1282872 None:intergenic 40.0%
TTATTCATTGGGGAAAGAGG+AGG + Chr5:1284272-1284291 None:intergenic 40.0%
TTCCCTTTCAGTGTTTACTC+AGG - Chr5:1283258-1283277 MsG0580024138.01.T01:CDS 40.0%
! AACGCGACCTGAATTTTCTT+TGG - Chr5:1281457-1281476 MsG0580024138.01.T01:CDS 40.0%
! CAACTTGTTTGACAGCAACA+GGG + Chr5:1282678-1282697 None:intergenic 40.0%
! GTGTGTGGGTACTGTAATAA+TGG - Chr5:1281485-1281504 MsG0580024138.01.T01:intron 40.0%
! TCAACTTGTTTGACAGCAAC+AGG + Chr5:1282679-1282698 None:intergenic 40.0%
! TTTCTTTGGTGTGTGTGTGT+GGG - Chr5:1281471-1281490 MsG0580024138.01.T01:intron 40.0%
!! CTTTTATTTGCGAGAGAGGT+AGG - Chr5:1283993-1284012 MsG0580024138.01.T01:intron 40.0%
!! GAAGTTGATGCTAAGTTCTC+TGG - Chr5:1284195-1284214 MsG0580024138.01.T01:intron 40.0%
!! GTATTGGTGTGCGTTAGTTT+TGG - Chr5:1281580-1281599 MsG0580024138.01.T01:intron 40.0%
!! GTCAGACCTATTTTGAGGAA+TGG - Chr5:1284513-1284532 MsG0580024138.01.T01:intron 40.0%
!! TTTTCTTTGGTGTGTGTGTG+TGG - Chr5:1281470-1281489 MsG0580024138.01.T01:intron 40.0%
AAAGGGTGGAGTTCATCTGA+AGG + Chr5:1284089-1284108 None:intergenic 45.0%
AAATTGAAATGGCTGGGGCT+GGG - Chr5:1281513-1281532 MsG0580024138.01.T01:intron 45.0%
AATTGGACACTAGCGACAGA+CGG + Chr5:1281873-1281892 None:intergenic 45.0%
ACTATAAAGCTTCCGACGAG+AGG + Chr5:1284559-1284578 None:intergenic 45.0%
ACTGGACATAATTGGAGACC+TGG - Chr5:1281395-1281414 MsG0580024138.01.T01:CDS 45.0%
AGAAACCGCAAAGGAAGCAA+CGG + Chr5:1282713-1282732 None:intergenic 45.0%
ATTACCGTTACTCCTCTTGC+TGG - Chr5:1284467-1284486 MsG0580024138.01.T01:intron 45.0%
CAACTAACCAGAAACCGCAA+AGG + Chr5:1282722-1282741 None:intergenic 45.0%
CCATGTCACACAATGGCTAA+CGG + Chr5:1282650-1282669 None:intergenic 45.0%
CTATAAAGCTTCCGACGAGA+GGG + Chr5:1284558-1284577 None:intergenic 45.0%
GATTACACATCCTTGAAGGC+GGG - Chr5:1284359-1284378 MsG0580024138.01.T01:intron 45.0%
GGAGCAAAACATCGAACAGT+TGG - Chr5:1281359-1281378 MsG0580024138.01.T01:CDS 45.0%
GGTTACAAGCTAACAAGGCA+GGG - Chr5:1283837-1283856 MsG0580024138.01.T01:intron 45.0%
GTCGTCTGTGCATGGAAAAA+GGG - Chr5:1283816-1283835 MsG0580024138.01.T01:intron 45.0%
GTGCCTGAGTAAACACTGAA+AGG + Chr5:1283264-1283283 None:intergenic 45.0%
TAATTGGAGACCTGGCAGTT+TGG - Chr5:1281403-1281422 MsG0580024138.01.T01:CDS 45.0%
TATAAAGCTTCCGACGAGAG+GGG + Chr5:1284557-1284576 None:intergenic 45.0%
TATTGGTCCTTCTGTCTGAG+AGG + Chr5:1283898-1283917 None:intergenic 45.0%
TCTTAGTCTGTGCTCCTGAT+AGG - Chr5:1282326-1282345 MsG0580024138.01.T01:CDS 45.0%
TGTCGTCTGTGCATGGAAAA+AGG - Chr5:1283815-1283834 MsG0580024138.01.T01:intron 45.0%
TTCGTTCTTTGCAGGTACTC+CGG - Chr5:1282803-1282822 MsG0580024138.01.T01:intron 45.0%
! ACTACCAGATCAGGTGTTGT+AGG + Chr5:1282867-1282886 None:intergenic 45.0%
! TATCGATGCTCCTGGTTTGA+GGG - Chr5:1282264-1282283 MsG0580024138.01.T01:CDS 45.0%
! TATTGGTTGTCGTCTGTGCA+TGG - Chr5:1283808-1283827 MsG0580024138.01.T01:intron 45.0%
!! CTTTGCGGTTTCTGGTTAGT+TGG - Chr5:1282720-1282739 MsG0580024138.01.T01:intron 45.0%
!!! TTATTCTTTATTTAAAAATT+TGG - Chr5:1282110-1282129 MsG0580024138.01.T01:intron 5.0%
AATTCGATCACCACGGAACC+TGG + Chr5:1282360-1282379 None:intergenic 50.0%
ACACCTGATCTGGTAGTCAG+TGG - Chr5:1282870-1282889 MsG0580024138.01.T01:CDS 50.0%
ATTGGACACTAGCGACAGAC+GGG + Chr5:1281872-1281891 None:intergenic 50.0%
CAAGTCACCTCTCAGACAGA+AGG - Chr5:1283888-1283907 MsG0580024138.01.T01:intron 50.0%
CCGTTAGCCATTGTGTGACA+TGG - Chr5:1282647-1282666 MsG0580024138.01.T01:intron 50.0%
CTAAAAAAGGCGGGGACATG+AGG + Chr5:1282949-1282968 None:intergenic 50.0%
GAAATTGAAATGGCTGGGGC+TGG - Chr5:1281512-1281531 MsG0580024138.01.T01:intron 50.0%
GAGACCAGCAAGAGGAGTAA+CGG + Chr5:1284474-1284493 None:intergenic 50.0%
GAGATGGATGAGGGTAAGCT+AGG - Chr5:1282215-1282234 MsG0580024138.01.T01:CDS 50.0%
GGGTTACAAGCTAACAAGGC+AGG - Chr5:1283836-1283855 MsG0580024138.01.T01:intron 50.0%
GGTAAGTAAACCAGGTTCCG+TGG - Chr5:1282347-1282366 MsG0580024138.01.T01:intron 50.0%
GGTGAAGCCATGTCACACAA+TGG + Chr5:1282657-1282676 None:intergenic 50.0%
GTGGATTCAACCAAACTGCC+AGG + Chr5:1281416-1281435 None:intergenic 50.0%
GTTGCTTCCTTTGCGGTTTC+TGG - Chr5:1282712-1282731 MsG0580024138.01.T01:intron 50.0%
TCAACCAAAGCCCTCAAACC+AGG + Chr5:1282277-1282296 None:intergenic 50.0%
TGGAACCGTTGCTTCCTTTG+CGG - Chr5:1282705-1282724 MsG0580024138.01.T01:intron 50.0%
! ATGCCACTGACTACCAGATC+AGG + Chr5:1282876-1282895 None:intergenic 50.0%
! CGATGATGTATCGATGCTCC+TGG - Chr5:1282256-1282275 MsG0580024138.01.T01:CDS 50.0%
! GTATCGATGCTCCTGGTTTG+AGG - Chr5:1282263-1282282 MsG0580024138.01.T01:CDS 50.0%
! GTTTACTCAGGCACTGTAGC+TGG - Chr5:1283270-1283289 MsG0580024138.01.T01:CDS 50.0%
! TGGAGTGATGGCTTGCATAG+CGG + Chr5:1284762-1284781 None:intergenic 50.0%
AAAAAGGCGGGGACATGAGG+AGG + Chr5:1282946-1282965 None:intergenic 55.0%
AAGAGGAGGCGAGGAGGATT+AGG + Chr5:1284258-1284277 None:intergenic 55.0%
ACTCACATAGCCCGCCTTCA+AGG + Chr5:1284372-1284391 None:intergenic 55.0%
AGCAGACTGCTGCTAGTGCT+TGG + Chr5:1284732-1284751 None:intergenic 55.0%
CCGGCTGATTGCACTTCTCT+CGG - Chr5:1282822-1282841 MsG0580024138.01.T01:intron 55.0%
GCAGACTGCTGCTAGTGCTT+GGG + Chr5:1284731-1284750 None:intergenic 55.0%
GCAGCAAGAGCAAAGTCGTG+TGG + Chr5:1283607-1283626 None:intergenic 55.0%
GTTGGCGTGCACTCAGTAAC+TGG - Chr5:1281377-1281396 MsG0580024138.01.T01:CDS 55.0%
! AGTGATGGCTTGCATAGCGG+AGG + Chr5:1284759-1284778 None:intergenic 55.0%
! CCGAGAGAAGTGCAATCAGC+CGG + Chr5:1282825-1282844 None:intergenic 55.0%
! GAGGGCTTTGGTTGAATCCC+TGG - Chr5:1282282-1282301 MsG0580024138.01.T01:CDS 55.0%
! TCTTGCTGGTCTCTCTCGTG+CGG - Chr5:1284481-1284500 MsG0580024138.01.T01:intron 55.0%
! TGCTCCTGGTTTGAGGGCTT+TGG - Chr5:1282270-1282289 MsG0580024138.01.T01:CDS 55.0%
AGCTTCCGACGAGAGGGGTT+TGG + Chr5:1284552-1284571 None:intergenic 60.0%
CACTGTAGCTGGAGCTCGAG+AGG - Chr5:1283281-1283300 MsG0580024138.01.T01:CDS 60.0%
CATTGGGGAAAGAGGAGGCG+AGG + Chr5:1284267-1284286 None:intergenic 60.0%
CTTCCGACGAGAGGGGTTTG+GGG + Chr5:1284550-1284569 None:intergenic 60.0%
GCACGAGAGAGACCAGCAAG+AGG + Chr5:1284482-1284501 None:intergenic 60.0%
GCTTCCGACGAGAGGGGTTT+GGG + Chr5:1284551-1284570 None:intergenic 60.0%
TGTCCCCAAACCCCTCTCGT+CGG - Chr5:1284544-1284563 MsG0580024138.01.T01:intron 60.0%
TGGGGAAAGAGGAGGCGAGG+AGG + Chr5:1284264-1284283 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
Chr5 gene 1281350 1284842 1281350 ID=MsG0580024138.01;Name=MsG0580024138.01
Chr5 mRNA 1281350 1284842 1281350 ID=MsG0580024138.01.T01;Parent=MsG0580024138.01;Name=MsG0580024138.01.T01;_AED=0.48;_eAED=0.61;_QI=0|0.5|0.42|1|0.66|0.71|7|0|316
Chr5 exon 1284658 1284842 1284658 ID=MsG0580024138.01.T01:exon:387;Parent=MsG0580024138.01.T01
Chr5 exon 1283459 1283556 1283459 ID=MsG0580024138.01.T01:exon:386;Parent=MsG0580024138.01.T01
Chr5 exon 1283241 1283375 1283241 ID=MsG0580024138.01.T01:exon:385;Parent=MsG0580024138.01.T01
Chr5 exon 1282846 1282912 1282846 ID=MsG0580024138.01.T01:exon:384;Parent=MsG0580024138.01.T01
Chr5 exon 1282454 1282607 1282454 ID=MsG0580024138.01.T01:exon:383;Parent=MsG0580024138.01.T01
Chr5 exon 1282182 1282355 1282182 ID=MsG0580024138.01.T01:exon:382;Parent=MsG0580024138.01.T01
Chr5 exon 1281350 1281487 1281350 ID=MsG0580024138.01.T01:exon:381;Parent=MsG0580024138.01.T01
Chr5 CDS 1284658 1284842 1284658 ID=MsG0580024138.01.T01:cds;Parent=MsG0580024138.01.T01
Chr5 CDS 1283459 1283556 1283459 ID=MsG0580024138.01.T01:cds;Parent=MsG0580024138.01.T01
Chr5 CDS 1283241 1283375 1283241 ID=MsG0580024138.01.T01:cds;Parent=MsG0580024138.01.T01
Chr5 CDS 1282846 1282912 1282846 ID=MsG0580024138.01.T01:cds;Parent=MsG0580024138.01.T01
Chr5 CDS 1282454 1282607 1282454 ID=MsG0580024138.01.T01:cds;Parent=MsG0580024138.01.T01
Chr5 CDS 1282182 1282355 1282182 ID=MsG0580024138.01.T01:cds;Parent=MsG0580024138.01.T01
Chr5 CDS 1281350 1281487 1281350 ID=MsG0580024138.01.T01:cds;Parent=MsG0580024138.01.T01
Gene Sequence

>MsG0580024138.01.T01

ATGTTCACAGGAGCAAAACATCGAACAGTTGGCGTGCACTCAGTAACTGGACATAATTGGAGACCTGGCAGTTTGGTTGAATCCACAAAATTGAAACTGATAGATTTAACGCGACCTGAATTTTCTTTGGTGTGTGTGTGTGGGTACTGTAATAATGGAATGGAAATTGAAATGGCTGGGGCTGGCGAGAAATCAGCCGTTAGCCATTGTGTGACATGGCTTCACCCTGTTGCTGTCAAACAAGTTGACATTCATGGAACCGTTGCTTCCTTTGCGGTTTCTGGTACTCCGGCTGATTGCACTTCTCTCGGAATTTCCAGAGCACTATTTCCTACAACACCTGATCTGGTAGTCAGTGGCATAAATAAGGGTAGCAACTGCGGCTATCACATGTATGTATCACAATTTTCCTCCTCATGCACTGTAGCTGGAGCTCGAGAGGCCTTCTTTAATGATATCCCTTCAATCTCCATTTCATATGACTGGGTTAAAGGAAAGAGTAATCCACACGACTTTGCTCTTGCTGCACAAGCTTGCATTCCAATCATAAGCACCATACTGGTTGATATAAAGAATCAAAGCTACCCTGGGAAATGTTTTTTGAATATAGACGTGCCAAACGATGTTGCTAACCATAAGGGTTACAAGCTAACAAGGCAGGGTAAAAGTATCTTTAAGATTGGATGGAGGCAAGTCACCTCTCAGACAGAAGGACCAATAATGTCATCGGATATGACCAATACTGATACTGATACACCTAAAAATTATGGCACGTCATCTACATCACCTGAACATCTTTTATTTGCGAGAGAGTTGTTAAATAAATTTTTTCAGATCCCAAGCACTAGCAGCAGTCTGCTTACTCCTCCGCTATGCAAGCCATCACTCCATTATTATCTTGGGCCAATAAAGACATTTCAACAGTTTGTTATATATATGATGATTAAATGA

Protein sequence

>MsG0580024138.01.T01

MFTGAKHRTVGVHSVTGHNWRPGSLVESTKLKLIDLTRPEFSLVCVCGYCNNGMEIEMAGAGEKSAVSHCVTWLHPVAVKQVDIHGTVASFAVSGTPADCTSLGISRALFPTTPDLVVSGINKGSNCGYHMYVSQFSSSCTVAGAREAFFNDIPSISISYDWVKGKSNPHDFALAAQACIPIISTILVDIKNQSYPGKCFLNIDVPNDVANHKGYKLTRQGKSIFKIGWRQVTSQTEGPIMSSDMTNTDTDTPKNYGTSSTSPEHLLFARELLNKFFQIPSTSSSLLTPPLCKPSLHYYLGPIKTFQQFVIYMMIK*