AlfalfaGEDB | MsG0780037342.01

M. sativa cultivar ZhongmuNo.1 / MsG0780037342.01

KEGG: -
GO: GO:0016021
PFAM: PF03040

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780037342.01.T01	YP_009656679.1	94.737	57	3	0	1	57	173	229	2.86E-28	110

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780037342.01.T01	P58155	91.228	57	5	0	1	57	173	229	1.35E-29	106

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780037342.01.T01	A0A4P8F2D4	94.737	57	3	0	1	57	173	229	1.36e-28	110

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0080047967.01	MsG0780037342.01	0.807645	4.569329e-50	2.558680e-47
MsG0080048560.01	MsG0780037342.01	0.845137	4.899949e-59	8.086303e-56
MsG0080048694.01	MsG0780037342.01	0.813166	2.937597e-51	1.904048e-48
MsG0080048695.01	MsG0780037342.01	0.813756	2.178824e-51	1.435170e-48
MsG0080048813.01	MsG0780037342.01	0.817764	2.784333e-52	2.045957e-49
MsG0080049018.01	MsG0780037342.01	0.805213	1.487886e-49	7.826308e-47
MsG0080049023.01	MsG0780037342.01	0.800996	1.108858e-48	5.237199e-46
MsG0180000417.01	MsG0780037342.01	0.814143	1.789939e-51	1.191463e-48
MsG0180000459.01	MsG0780037342.01	0.808203	3.476317e-50	1.975514e-47
MsG0180000719.01	MsG0780037342.01	0.810379	1.186851e-50	7.142805e-48
MsG0180001054.01	MsG0780037342.01	0.806180	9.320864e-50	5.026203e-47
MsG0180001072.01	MsG0780037342.01	0.824805	6.615993e-54	5.923020e-51
MsG0180002099.01	MsG0780037342.01	0.803442	3.480149e-49	1.749001e-46
MsG0180004773.01	MsG0780037342.01	0.808702	2.720093e-50	1.565983e-47
MsG0180005783.01	MsG0780037342.01	0.807299	5.409021e-50	3.001944e-47
MsG0180005791.01	MsG0780037342.01	0.828926	6.850246e-55	6.905837e-52
MsG0180006212.01	MsG0780037342.01	0.800515	1.389775e-48	6.483903e-46
MsG0180006227.01	MsG0780037342.01	0.813179	2.917185e-51	1.891559e-48
MsG0280010780.01	MsG0780037342.01	0.802823	4.672304e-49	2.311459e-46
MsG0380013114.01	MsG0780037342.01	0.814039	1.887462e-51	1.252858e-48
MsG0380013448.01	MsG0780037342.01	0.818634	1.769691e-52	1.331810e-49
MsG0380013921.01	MsG0780037342.01	0.816931	4.286737e-52	3.078891e-49
MsG0380013928.01	MsG0780037342.01	0.818519	1.879145e-52	1.409798e-49
MsG0380013943.01	MsG0780037342.01	0.801825	7.498279e-49	3.616212e-46
MsG0380013945.01	MsG0780037342.01	0.802369	5.795828e-49	2.834260e-46
MsG0380013956.01	MsG0780037342.01	0.814472	1.513836e-51	1.016774e-48
MsG0380013966.01	MsG0780037342.01	0.802589	5.222423e-49	2.568041e-46
MsG0380013971.01	MsG0780037342.01	0.813758	2.176890e-51	1.433950e-48
MsG0380013975.01	MsG0780037342.01	0.801261	9.787533e-49	4.653389e-46
MsG0380013999.01	MsG0780037342.01	0.800396	1.469871e-48	6.836860e-46
MsG0380014004.01	MsG0780037342.01	0.810572	1.078536e-50	6.524345e-48
MsG0380014005.01	MsG0780037342.01	0.816691	4.854273e-52	3.463337e-49
MsG0380014020.01	MsG0780037342.01	0.822541	2.241934e-53	1.882130e-50
MsG0380014021.01	MsG0780037342.01	0.816460	5.468407e-52	3.876906e-49
MsG0380014023.01	MsG0780037342.01	0.824701	6.997293e-54	6.245850e-51
MsG0380014029.01	MsG0780037342.01	0.817287	3.565327e-52	2.585678e-49
MsG0380014032.01	MsG0780037342.01	0.810081	1.376454e-50	8.219500e-48
MsG0380014129.01	MsG0780037342.01	0.821878	3.194505e-53	2.631534e-50
MsG0680031813.01	MsG0780037342.01	0.809078	2.260049e-50	1.314259e-47
MsG0680034229.01	MsG0780037342.01	0.803024	4.246628e-49	2.111379e-46
MsG0480018628.01	MsG0780037342.01	0.815500	8.953468e-52	6.183902e-49
MsG0480020550.01	MsG0780037342.01	0.804561	2.036155e-49	1.053164e-46
MsG0480021327.01	MsG0780037342.01	0.833557	4.979466e-56	5.755089e-53
MsG0480021331.01	MsG0780037342.01	0.838339	3.050431e-57	4.073198e-54
MsG0480021563.01	MsG0780037342.01	0.800786	1.224133e-48	5.750189e-46
MsG0480022581.01	MsG0780037342.01	0.808551	2.930163e-50	1.680350e-47
MsG0480022591.01	MsG0780037342.01	0.820922	5.310776e-53	4.259143e-50
MsG0480023006.01	MsG0780037342.01	0.809632	1.719241e-50	1.014719e-47
MsG0480023152.01	MsG0780037342.01	0.815215	1.036078e-51	7.099195e-49
MsG0480023577.01	MsG0780037342.01	0.802356	5.833704e-49	2.851785e-46
MsG0380015200.01	MsG0780037342.01	0.809244	2.082103e-50	1.216216e-47
MsG0380015201.01	MsG0780037342.01	0.819564	1.086964e-52	8.394143e-50
MsG0380015348.01	MsG0780037342.01	0.826479	2.652178e-54	2.490068e-51
MsG0380016881.01	MsG0780037342.01	0.811822	5.776060e-51	3.611871e-48
MsG0380017405.01	MsG0780037342.01	0.831694	1.443526e-55	1.578512e-52
MsG0380017406.01	MsG0780037342.01	0.807607	4.653835e-50	2.603434e-47
MsG0380017812.01	MsG0780037342.01	0.820912	5.337208e-53	4.279195e-50
MsG0480018088.01	MsG0780037342.01	0.805024	1.630059e-49	8.532392e-47
MsG0480018296.01	MsG0780037342.01	0.812744	3.634839e-51	2.329788e-48
MsG0580027677.01	MsG0780037342.01	0.800173	1.631972e-48	7.547695e-46
MsG0580029820.01	MsG0780037342.01	0.803012	4.271051e-49	2.122831e-46
MsG0680030439.01	MsG0780037342.01	0.813368	2.651827e-51	1.728514e-48
MsG0680030644.01	MsG0780037342.01	0.824955	6.098447e-54	5.482983e-51
MsG0280009094.01	MsG0780037342.01	0.810036	1.407212e-50	8.394048e-48
MsG0280009742.01	MsG0780037342.01	0.804425	2.173330e-49	1.120168e-46
MsG0280009864.01	MsG0780037342.01	0.804631	1.968505e-49	1.020003e-46
MsG0280010142.01	MsG0780037342.01	0.810441	1.150932e-50	6.938059e-48
MsG0280010227.01	MsG0780037342.01	0.801854	7.397821e-49	3.570422e-46
MsG0780036002.01	MsG0780037342.01	0.842246	2.906747e-58	4.380653e-55
MsG0780036004.01	MsG0780037342.01	0.814877	1.231624e-51	8.362149e-49
MsG0780037342.01	MsG0780037458.01	0.809982	1.445758e-50	8.611577e-48
MsG0780037342.01	MsG0780038030.01	0.823346	1.455749e-53	1.250093e-50
MsG0780037342.01	MsG0780038047.01	0.817626	2.991189e-52	2.189553e-49
MsG0780037342.01	MsG0780038108.01	0.817515	3.168140e-52	2.312180e-49
MsG0780037342.01	MsG0780038197.01	0.852027	6.042424e-61	1.246127e-57
MsG0780037342.01	MsG0780038263.01	0.811834	5.741128e-51	3.591137e-48
MsG0780037342.01	MsG0780039836.01	0.813466	2.523611e-51	1.649365e-48
MsG0780037342.01	MsG0780039838.01	0.819382	1.195909e-52	9.187916e-50
MsG0780037342.01	MsG0780039839.01	0.819954	8.855065e-53	6.913199e-50
MsG0780037342.01	MsG0780040321.01	0.818190	2.231201e-52	1.658718e-49
MsG0780037342.01	MsG0780041121.01	0.830880	2.289096e-55	2.443321e-52
MsG0780037342.01	MsG0780041783.01	0.804611	1.988120e-49	1.029654e-46
MsG0780037342.01	MsG0880042291.01	0.817641	2.968252e-52	2.173654e-49
MsG0780037342.01	MsG0880042858.01	0.814973	1.172688e-51	7.982985e-49
MsG0780037342.01	MsG0880045273.01	0.830755	2.456236e-55	2.612096e-52
MsG0780037342.01	MsG0880045274.01	0.805306	1.422467e-49	7.500020e-47
MsG0780037342.01	MsG0880045321.01	0.830630	2.635657e-55	2.792502e-52
MsG0780037342.01	MsG0880045369.01	0.816921	4.310533e-52	3.095008e-49
MsG0780037342.01	MsG0880045385.01	0.821079	4.884194e-53	3.934475e-50
MsG0780037342.01	MsG0880045630.01	0.843326	1.501198e-58	2.340769e-55
MsG0780037342.01	MsG0880045755.01	0.809569	1.773192e-50	1.044769e-47
MsG0780037342.01	MsG0880046189.01	0.811562	6.578342e-51	4.085415e-48
MsG0780037342.01	MsG0880046469.01	0.826008	3.433490e-54	3.180955e-51
MsG0780037342.01	MsG0880046630.01	0.814201	1.738323e-51	1.158878e-48

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780037342.01.T01	ATCG00530	77.193	57	13	0	1	57	173	229	2.76e-25	93.2

Find 8 sgRNAs with CRISPR-Local

Find 7 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
GGGTCTGTCTATAAATATTT+TGG	0.174437	7:+23968676	MsG0780037342.01.T01:CDS
CATGGTTGGGAACTAATGAT+TGG	0.443529	7:+23968655	None:intergenic
AAAATTGTATCTAAAATGAC+TGG	0.459050	7:-23968745	None:intergenic
ATCTAAAATGACTGGAAAAG+TGG	0.472631	7:-23968737	None:intergenic
CAATGAATGACTATAGCTCT+TGG	0.495815	7:+23968830	MsG0780037342.01.T01:CDS
GAGATACACGATTTGAATAA+CGG	0.513932	7:-23968783	None:intergenic
ATGGTTGGGAACTAATGATT+GGG	0.515648	7:+23968656	None:intergenic
TGATAAATCACTACAAGTGA+CGG	0.591823	7:-23968805	None:intergenic

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!!	TAGATACAATTTTAAAATAC+TGG	+	Chr7:23968755-23968774	MsG0780037342.01.T01:CDS	15.0%
!!!	AAAATTGTATCTAAAATGAC+TGG	-	Chr7:23968748-23968767	None:intergenic	20.0%
	GAGATACACGATTTGAATAA+CGG	-	Chr7:23968786-23968805	None:intergenic	30.0%
	TGATAAATCACTACAAGTGA+CGG	-	Chr7:23968808-23968827	None:intergenic	30.0%
!	ATCTAAAATGACTGGAAAAG+TGG	-	Chr7:23968740-23968759	None:intergenic	30.0%
!	GGGTCTGTCTATAAATATTT+TGG	+	Chr7:23968676-23968695	MsG0780037342.01.T01:CDS	30.0%
	CAATGAATGACTATAGCTCT+TGG	+	Chr7:23968830-23968849	MsG0780037342.01.T01:CDS	35.0%

Chromosome	Type	Strat	End	Strand	Name
Chr7	gene	23968670	23968855	23968670	ID=MsG0780037342.01;Name=MsG0780037342.01
Chr7	mRNA	23968670	23968855	23968670	ID=MsG0780037342.01.T01;Parent=MsG0780037342.01;Name=MsG0780037342.01.T01;_AED=0.38;_eAED=0.43;_QI=0\|-1\|0\|1\|-1\|0\|1\|0\|61
Chr7	exon	23968670	23968855	23968670	ID=MsG0780037342.01.T01:exon:31994;Parent=MsG0780037342.01.T01
Chr7	CDS	23968670	23968855	23968670	ID=MsG0780037342.01.T01:cds;Parent=MsG0780037342.01.T01
Chr7	mRNA	23968710	23968757	23968710	ID=MsG0780037342.01.T02;Parent=MsG0780037342.01;Name=MsG0780037342.01.T02;_AED=0.47;_eAED=1.00;_QI=0\|-1\|0\|1\|-1\|0\|1\|0\|15
Chr7	exon	23968710	23968757	23968710	ID=MsG0780037342.01.T02:exon:31995;Parent=MsG0780037342.01.T02
Chr7	CDS	23968710	23968757	23968710	ID=MsG0780037342.01.T02:cds;Parent=MsG0780037342.01.T02
Chr7	mRNA	23968832	23968855	23968832	ID=MsG0780037342.01.T03;Parent=MsG0780037342.01;Name=MsG0780037342.01.T03;_AED=0.48;_eAED=0.81;_QI=0\|-1\|0\|1\|-1\|0\|1\|0\|7
Chr7	exon	23968832	23968855	23968832	ID=MsG0780037342.01.T03:exon:31996;Parent=MsG0780037342.01.T03
Chr7	CDS	23968832	23968855	23968832	ID=MsG0780037342.01.T03:cds;Parent=MsG0780037342.01.T03

Gene Sequence	>MsG0780037342.01.T02 ATGATCAAATTATATCTAGTCTTGTTTCCACTTTTCCAGTCATTTTAG >MsG0780037342.01.T03 ATGAATGACTATAGCTCTTGGTAA >MsG0780037342.01.T01 ATGATTGGGTCTGTCTATAAATATTTTGGATTTACTCAGAATGATCAAATTATATCTAGTCTTGTTTCCACTTTTCCAGTCATTTTAGATACAATTTTAAAATACTGGATTTTCCGTTATTCAAATCGTGTATCTCCGTCACTTGTAGTGATTTATCATTCAATGAATGACTATAGCTCTTGGTAA
Protein sequence	>MsG0780037342.01.T02 MIKLYLVLFPLFQSF* >MsG0780037342.01.T03 MNDYSSW* >MsG0780037342.01.T01 MIGSVYKYFGFTQNDQIISSLVSTFPVILDTILKYWIFRYSNRVSPSLVVIYHSMNDYSSW*