AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0011900

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0011900 MtrunA17_Chr1g0160431 87.745 204 24 1 77 279 33 236 7.01e-112 322
Msa0011900 MtrunA17_Chr8g0372791 36.458 192 105 4 91 279 48 225 2.12e-18 81.6
Msa0011900 MtrunA17_Chr6g0453501 30.677 251 134 7 32 279 42 255 5.27e-14 70.1
Msa0011900 MtrunA17_Chr1g0160441 88.235 34 4 0 77 110 33 66 1.79e-12 61.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0011900 AT2G43630.1 36.316 190 104 3 100 279 80 262 1.02e-30 116

Find 96 sgRNAs with CRISPR-Local

Find 206 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAGCGCTTGTTCAATGTTTC+TGG 0.075211 1_1:+17865111 None:intergenic
AAATGCAATGGACAAATTTA+AGG 0.142467 1_1:-17863637 Msa0011900:CDS
TAAGCGTATCATGGTAAAAT+TGG 0.154842 1_1:-17862754 Msa0011900:CDS
ATCTGGTGCCTTACTCTTTC+TGG 0.178984 1_1:-17863433 Msa0011900:intron
GAAACTCCGGCGGCGGTTTC+CGG 0.199718 1_1:+17865143 None:intergenic
ATAAGAGATAAACCGTTATT+TGG 0.220474 1_1:-17864787 Msa0011900:CDS
ATCCACTTTGGTGCCATTAA+TGG 0.238695 1_1:+17865372 None:intergenic
CGCAAAACAGACTGGATAAC+TGG 0.329265 1_1:+17865346 None:intergenic
CCAGGAGGAGGAGGAGAAGG+TGG 0.330061 1_1:-17863534 Msa0011900:CDS
AAGGACAGTTGTAACTTCTA+AGG 0.333710 1_1:-17862436 Msa0011900:three_prime_UTR
CCATGTTGGGGTATTCAAAA+TGG 0.340619 1_1:+17862671 None:intergenic
AATCACTGATGAGCACTTCT+TGG 0.357933 1_1:-17862700 Msa0011900:CDS
CCTCTTCGTGCTGGTGGAAA+AGG 0.365292 1_1:-17864748 Msa0011900:CDS
CAGGATCATACCACCATGTT+GGG 0.367552 1_1:+17862658 None:intergenic
CACCAGATGCGAAAATTGTT+TGG 0.372513 1_1:+17863448 None:intergenic
AAACATTGAACAAGCGCTTC+AGG 0.381975 1_1:-17865107 Msa0011900:intron
AATGCAATGGACAAATTTAA+GGG 0.386519 1_1:-17863636 Msa0011900:CDS
CCACCTTCTCCTCCTCCTCC+TGG 0.389125 1_1:+17863534 None:intergenic
TTACGGAAGCAAATTCAAAA+AGG 0.403502 1_1:-17863594 Msa0011900:CDS
GGTGCCATTGATGCCATTAA+TGG 0.405547 1_1:-17865385 Msa0011900:CDS
TTAAGGTTTATAGTTGGCTT+AGG 0.406725 1_1:-17862792 Msa0011900:CDS
AGGAGGAGGAGGAGAAGGTG+GGG 0.423587 1_1:-17863532 Msa0011900:CDS
TATTGTGAATTTGTCCCTAC+TGG 0.427513 1_1:-17862336 Msa0011900:three_prime_UTR
GGTGGTGGTGGCAGTCCCAA+TGG 0.428342 1_1:-17863510 Msa0011900:CDS
AAAGATTTCAATCCAAATAA+CGG 0.429165 1_1:+17864775 None:intergenic
GGTGGCAGTCCCAATGGCCC+TGG 0.434107 1_1:-17863504 Msa0011900:CDS
TTCAATGTTTCTGGCGCCGA+CGG 0.444111 1_1:+17865120 None:intergenic
GGTGCCATTAATGGCATCAA+TGG 0.449360 1_1:+17865381 None:intergenic
AAGCGTATCATGGTAAAATT+GGG 0.456666 1_1:-17862753 Msa0011900:CDS
GTGTGTGGTGGAGATGGAAT+TGG 0.457029 1_1:-17865410 None:intergenic
GGAGGAGGAGGAGAAGGTGG+GGG 0.460530 1_1:-17863531 Msa0011900:CDS
TATTTAGACAATGGTGGAAG+TGG 0.463016 1_1:-17863567 Msa0011900:CDS
CCACCAGGAGGAGGAGGAGA+AGG 0.467905 1_1:-17863537 Msa0011900:CDS
AATCAATAGAAGAAGTATTA+CGG 0.472780 1_1:-17863611 Msa0011900:CDS
GCCTCAAGTGGTTTGTCTAG+TGG 0.478776 1_1:-17862383 Msa0011900:three_prime_UTR
TCAGATCCACCAGGGCCATT+GGG 0.486936 1_1:+17863495 None:intergenic
TTGAAGCCTCTTCGTGCTGG+TGG 0.489434 1_1:-17864754 Msa0011900:CDS
ATCAGATCCACCAGGGCCAT+TGG 0.489944 1_1:+17863494 None:intergenic
AGAGTGTACCAGAAAGAGTA+AGG 0.496063 1_1:+17863425 None:intergenic
GCTGGTGGAAAAGGAATGTC+AGG 0.500826 1_1:-17864739 Msa0011900:CDS
GTAAAGCCACCAGGAGGAGG+AGG 0.507231 1_1:-17863543 Msa0011900:CDS
TCTTTGAAGCCTCTTCGTGC+TGG 0.511134 1_1:-17864757 Msa0011900:CDS
CATTTGTAATAGATTGCCAT+GGG 0.513734 1_1:+17863655 None:intergenic
CAGGAGGAGGAGGAGAAGGT+GGG 0.514543 1_1:-17863533 Msa0011900:CDS
GGAGTAAAGCCACCAGGAGG+AGG 0.524624 1_1:-17863546 Msa0011900:CDS
CCGACGGGAAACTCCGGCGG+CGG 0.525013 1_1:+17865136 None:intergenic
TCAATGTTTCTGGCGCCGAC+GGG 0.533034 1_1:+17865121 None:intergenic
TCAGGATCATACCACCATGT+TGG 0.534231 1_1:+17862657 None:intergenic
GCATTTGTAATAGATTGCCA+TGG 0.534840 1_1:+17863654 None:intergenic
GAGTTATTCGTCTGCATCTG+AGG 0.535731 1_1:+17862602 None:intergenic
GGCAGTCCCAATGGCCCTGG+TGG 0.545700 1_1:-17863501 Msa0011900:CDS
GCAATCTATTACAAATGCAA+TGG 0.555704 1_1:-17863649 Msa0011900:CDS
TAGTCGAATTAAGCGTATCA+TGG 0.558198 1_1:-17862763 Msa0011900:CDS
TAAAATTGGGAAAATTGTAC+CGG 0.563003 1_1:-17862740 Msa0011900:CDS
CTGGCGCCGACGGGAAACTC+CGG 0.567046 1_1:+17865130 None:intergenic
CCTACTGGTTTCTTTGAGCG+AGG 0.568067 1_1:-17862321 Msa0011900:three_prime_UTR
GGTGAGTATTTAGACAATGG+TGG 0.570123 1_1:-17863573 Msa0011900:CDS
ATCTCACCGGAAACCGCCGC+CGG 0.570989 1_1:-17865149 Msa0011900:CDS
GGCACAACAAATGCAAGGAA+AGG 0.572946 1_1:+17862477 None:intergenic
TGATGAGCACTTCTTGGAGA+AGG 0.574676 1_1:-17862694 Msa0011900:CDS
CCTTCTCCTCCTCCTCCTGG+TGG 0.583094 1_1:+17863537 None:intergenic
GATAACTGGACTATCCACTT+TGG 0.584308 1_1:+17865360 None:intergenic
TAAGTATTCAACGAGTTGCA+AGG 0.585579 1_1:-17862280 Msa0011900:three_prime_UTR
AGTATCATTCTAGCCTCAAG+TGG 0.587594 1_1:-17862395 Msa0011900:three_prime_UTR
TCTTCATCATCAGATCCACC+AGG 0.590752 1_1:+17863486 None:intergenic
AAGGTAAGAAAACAAATGAG+AGG 0.591414 1_1:+17862549 None:intergenic
CCTTGCTATATGACAATCTG+AGG 0.595953 1_1:+17862455 None:intergenic
AAAGGTGAGTATTTAGACAA+TGG 0.597947 1_1:-17863576 Msa0011900:CDS
AAAGAGCATCATTAAACTCA+AGG 0.598768 1_1:+17862530 None:intergenic
AAATGCAATCGCTGCCGGTG+TGG 0.605334 1_1:-17865209 Msa0011900:CDS
ACTGCCGTACGAAAATCCTC+AGG 0.605585 1_1:+17862639 None:intergenic
CCTCGCTCAAAGAAACCAGT+AGG 0.607545 1_1:+17862321 None:intergenic
TATCTATCTCATCATGAGCA+AGG 0.607713 1_1:-17862841 Msa0011900:CDS
AGGTAAGAAAACAAATGAGA+GGG 0.608436 1_1:+17862550 None:intergenic
TGCCATTAATGGCACCAAAG+TGG 0.608779 1_1:-17865374 Msa0011900:CDS
AACATGGTGGTATGATCCTG+AGG 0.623546 1_1:-17862655 Msa0011900:CDS
CCTCAGATTGTCATATAGCA+AGG 0.623611 1_1:-17862455 Msa0011900:three_prime_UTR
TCCACTAGACAAACCACTTG+AGG 0.624133 1_1:+17862382 None:intergenic
TCGCACTGAACTCATCTCAC+CGG 0.624534 1_1:-17865162 Msa0011900:CDS
CTGAGGGCACAACAAATGCA+AGG 0.631030 1_1:+17862472 None:intergenic
GTGGTGGAGATGGAATTGGA+TGG 0.632280 1_1:-17865406 None:intergenic
GCGCCGACGGGAAACTCCGG+CGG 0.633580 1_1:+17865133 None:intergenic
CCGCCGCCGGAGTTTCCCGT+CGG 0.634582 1_1:-17865136 Msa0011900:CDS
GGAAGTGGAGTAAAGCCACC+AGG 0.635749 1_1:-17863552 Msa0011900:CDS
TAATGTGTACTCGAATCCAA+AGG 0.645425 1_1:+17862252 None:intergenic
AATGTCAGGAAAGAGTGATG+AGG 0.648815 1_1:-17864725 Msa0011900:intron
AGGATCATACCACCATGTTG+GGG 0.658146 1_1:+17862659 None:intergenic
TGTAAGCTGTTTGTTATACG+AGG 0.661610 1_1:+17865186 None:intergenic
CTTGCTATATGACAATCTGA+GGG 0.672192 1_1:+17862456 None:intergenic
ATAATAATCAGAATTCCCCA+TGG 0.676568 1_1:-17863671 Msa0011900:intron
CTCGCTCAAAGAAACCAGTA+GGG 0.676907 1_1:+17862322 None:intergenic
TTTGTTATACGAGGCCACAC+CGG 0.679217 1_1:+17865195 None:intergenic
TGTACCGGAGTACGAAACAG+AGG 0.680091 1_1:-17862725 Msa0011900:CDS
CTTCATCATCAGATCCACCA+GGG 0.689052 1_1:+17863487 None:intergenic
AGTGGAGTAAAGCCACCAGG+AGG 0.725114 1_1:-17863549 Msa0011900:CDS
ATTTGTAATAGATTGCCATG+GGG 0.741669 1_1:+17863656 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTCTTTTTTTCTTTTTAAA+TGG - chr1_1:17863531-17863550 Msa0011900:CDS 10.0%
!! AAATTATAACTAAAAAGAAG+TGG + chr1_1:17862961-17862980 None:intergenic 15.0%
!!! TTTTTCTTTTTAAATGGAAA+TGG - chr1_1:17863537-17863556 Msa0011900:CDS 15.0%
!!! TAGTTAATGTTTTTGATTAA+TGG - chr1_1:17864391-17864410 Msa0011900:intron 15.0%
!!! AAAAATTTTGATGTCAAATT+TGG - chr1_1:17864623-17864642 Msa0011900:intron 15.0%
!! AAAGATTTCAATCCAAATAA+CGG + chr1_1:17862883-17862902 None:intergenic 20.0%
!!! TTTTATCTAAAGATGCATTT+AGG - chr1_1:17863225-17863244 Msa0011900:intron 20.0%
!!! TTAAGTTGTTTATACAAACA+AGG - chr1_1:17863496-17863515 Msa0011900:CDS 20.0%
!!! ATTTTTATAATAGACAACCT+AGG - chr1_1:17863717-17863736 Msa0011900:intron 20.0%
!!! TTTTTATAATAGACAACCTA+GGG - chr1_1:17863718-17863737 Msa0011900:intron 20.0%
!!! AATCAATAGAAGAAGTATTA+CGG - chr1_1:17864044-17864063 Msa0011900:intron 20.0%
!!! ATTAAGAGTTGATAGAATAT+AGG - chr1_1:17864562-17864581 Msa0011900:intron 20.0%
!!! TTTTCAAAAGGAAATGGATT+AGG + chr1_1:17862420-17862439 None:intergenic 25.0%
! ATAAGAGATAAACCGTTATT+TGG - chr1_1:17862868-17862887 Msa0011900:intron 25.0%
!! AATTTTGCCTGTTATTATTG+AGG - chr1_1:17862976-17862995 Msa0011900:intron 25.0%
!! ATTTTGCCTGTTATTATTGA+GGG - chr1_1:17862977-17862996 Msa0011900:intron 25.0%
!! TATTTTCCCTCAATAATAAC+AGG + chr1_1:17862986-17863005 None:intergenic 25.0%
!!! GAATCATGTTATTTCTCAAT+CGG - chr1_1:17863089-17863108 Msa0011900:intron 25.0%
!!! GGTTATTTTAGTTTATCTAC+TGG - chr1_1:17863262-17863281 Msa0011900:intron 25.0%
!!! TATACAAACAAGGTCTTATT+AGG - chr1_1:17863506-17863525 Msa0011900:CDS 25.0%
! TCTGTAGTACAAATATTGAA+AGG - chr1_1:17863689-17863708 Msa0011900:intron 25.0%
! CTGTAGTACAAATATTGAAA+GGG - chr1_1:17863690-17863709 Msa0011900:intron 25.0%
!!! TTGTTTGGTTTTTAAAACGT+TGG - chr1_1:17863905-17863924 Msa0011900:intron 25.0%
! AAATGCAATGGACAAATTTA+AGG - chr1_1:17864018-17864037 Msa0011900:intron 25.0%
! AATGCAATGGACAAATTTAA+GGG - chr1_1:17864019-17864038 Msa0011900:intron 25.0%
!!! TCTGAATTTTGAAAACTCAA+AGG - chr1_1:17864330-17864349 Msa0011900:intron 25.0%
! ATAATTTCTCTTCAGAAATG+AGG + chr1_1:17864593-17864612 None:intergenic 25.0%
!!! GACTTTTTAAGGTTTATAGT+TGG - chr1_1:17864857-17864876 Msa0011900:intron 25.0%
! TAAAATTGGGAAAATTGTAC+CGG - chr1_1:17864915-17864934 Msa0011900:intron 25.0%
GTGGGAATAAAAGATTTGAA+CGG - chr1_1:17862344-17862363 Msa0011900:three_prime_UTR 30.0%
AAAATGTTCCCTTTCAATCT+GGG + chr1_1:17862370-17862389 None:intergenic 30.0%
!!! TTTGGCTTTTCAAAAGGAAA+TGG + chr1_1:17862426-17862445 None:intergenic 30.0%
!!! GCATTTTTTGGCTTTTCAAA+AGG + chr1_1:17862432-17862451 None:intergenic 30.0%
ATGATAGGGGAAGAAAAATT+CGG + chr1_1:17862604-17862623 None:intergenic 30.0%
!! ATTTAGGACTGGTTTAGATT+GGG - chr1_1:17863241-17863260 Msa0011900:intron 30.0%
AGAATTTCCTAATAAGACCT+GGG + chr1_1:17863516-17863535 None:intergenic 30.0%
! GTACTACTGTTCAGTTATTT+TGG + chr1_1:17863867-17863886 None:intergenic 30.0%
ACAAAATCAGACAGTTCAAT+TGG + chr1_1:17863889-17863908 None:intergenic 30.0%
! TTGAACTGTCTGATTTTGTT+TGG - chr1_1:17863890-17863909 Msa0011900:intron 30.0%
ATAATAATCAGAATTCCCCA+TGG - chr1_1:17863984-17864003 Msa0011900:intron 30.0%
ATTTGTAATAGATTGCCATG+GGG + chr1_1:17864002-17864021 None:intergenic 30.0%
CATTTGTAATAGATTGCCAT+GGG + chr1_1:17864003-17864022 None:intergenic 30.0%
GCAATCTATTACAAATGCAA+TGG - chr1_1:17864006-17864025 Msa0011900:intron 30.0%
TTACGGAAGCAAATTCAAAA+AGG - chr1_1:17864061-17864080 Msa0011900:intron 30.0%
AAAGGTGAGTATTTAGACAA+TGG - chr1_1:17864079-17864098 Msa0011900:intron 30.0%
ACTCAAAGGAGAAAGTTAAA+TGG - chr1_1:17864344-17864363 Msa0011900:intron 30.0%
TCAAAAGTCTTCTCATATAC+CGG + chr1_1:17864491-17864510 None:intergenic 30.0%
TCAACTCTTAATCATGTCAA+GGG + chr1_1:17864554-17864573 None:intergenic 30.0%
ATCAACTCTTAATCATGTCA+AGG + chr1_1:17864555-17864574 None:intergenic 30.0%
TCATGATGAGATAGATATAC+TGG + chr1_1:17864811-17864830 None:intergenic 30.0%
! GCACAATTTTCGACTTTTTA+AGG - chr1_1:17864846-17864865 Msa0011900:intron 30.0%
! TTAAGGTTTATAGTTGGCTT+AGG - chr1_1:17864863-17864882 Msa0011900:intron 30.0%
TAAGCGTATCATGGTAAAAT+TGG - chr1_1:17864901-17864920 Msa0011900:intron 30.0%
AAGCGTATCATGGTAAAATT+GGG - chr1_1:17864902-17864921 Msa0011900:intron 30.0%
AGGTAAGAAAACAAATGAGA+GGG + chr1_1:17865108-17865127 None:intergenic 30.0%
AAGGTAAGAAAACAAATGAG+AGG + chr1_1:17865109-17865128 None:intergenic 30.0%
!! AAAGAGCATCATTAAACTCA+AGG + chr1_1:17865128-17865147 None:intergenic 30.0%
GAAAATGTTCCCTTTCAATC+TGG + chr1_1:17862371-17862390 None:intergenic 35.0%
! TTGAAAGGGAACATTTTCAC+TGG - chr1_1:17862373-17862392 Msa0011900:three_prime_UTR 35.0%
!! TGTAAGCTGTTTGTTATACG+AGG + chr1_1:17862472-17862491 None:intergenic 35.0%
CAATAATCGCCACTGAAAAA+AGG - chr1_1:17862666-17862685 Msa0011900:CDS 35.0%
ACTGAAAAAAGGCTATTACG+CGG - chr1_1:17862677-17862696 Msa0011900:CDS 35.0%
CAAGTTACAGCATTTCAACT+TGG - chr1_1:17862766-17862785 Msa0011900:CDS 35.0%
TAAACTCTTTCCCTCAGATT+CGG - chr1_1:17862836-17862855 Msa0011900:CDS 35.0%
TGCTAATATTCCGAATCTGA+GGG + chr1_1:17862849-17862868 None:intergenic 35.0%
ATGCTAATATTCCGAATCTG+AGG + chr1_1:17862850-17862869 None:intergenic 35.0%
! TCTAAAGATGCATTTAGGAC+TGG - chr1_1:17863230-17863249 Msa0011900:intron 35.0%
!! CATTTAGGACTGGTTTAGAT+TGG - chr1_1:17863240-17863259 Msa0011900:intron 35.0%
TAAGCACTTGTGAGATTGTT+TGG - chr1_1:17863287-17863306 Msa0011900:intron 35.0%
AAGCACTTGTGAGATTGTTT+GGG - chr1_1:17863288-17863307 Msa0011900:intron 35.0%
!! GTTGTTTTCATCAGCTACAA+TGG + chr1_1:17863371-17863390 None:intergenic 35.0%
TAATATTTACTCCTTCGTCC+TGG - chr1_1:17863586-17863605 Msa0011900:CDS 35.0%
AATTTCCTAATAAGACCTGG+GGG + chr1_1:17863670-17863689 None:intergenic 35.0%
GAATTTCCTAATAAGACCTG+GGG + chr1_1:17863671-17863690 None:intergenic 35.0%
CAGAATTTCCTAATAAGACC+TGG + chr1_1:17863673-17863692 None:intergenic 35.0%
AAAACATTGTTGCATACCCT+AGG + chr1_1:17863737-17863756 None:intergenic 35.0%
!!! CTACTGTTCAGTTATTTTGG+CGG + chr1_1:17863864-17863883 None:intergenic 35.0%
GCATTTGTAATAGATTGCCA+TGG + chr1_1:17864004-17864023 None:intergenic 35.0%
! TATTTAGACAATGGTGGAAG+TGG - chr1_1:17864088-17864107 Msa0011900:intron 35.0%
CGGTATATGTGTAGTATATG+TGG - chr1_1:17864262-17864281 Msa0011900:intron 35.0%
GGACAAGTAAATTACTCATC+TGG - chr1_1:17864283-17864302 Msa0011900:intron 35.0%
! TATGAGAAGACTTTTGAGCA+TGG - chr1_1:17864494-17864513 Msa0011900:intron 35.0%
TTCTCTTCAGAAATGAGGAA+TGG + chr1_1:17864588-17864607 None:intergenic 35.0%
GCTTGAGCATTAAGAAATAG+TGG + chr1_1:17864774-17864793 None:intergenic 35.0%
TATCTATCTCATCATGAGCA+AGG - chr1_1:17864814-17864833 Msa0011900:intron 35.0%
TAGTCGAATTAAGCGTATCA+TGG - chr1_1:17864892-17864911 Msa0011900:intron 35.0%
! CTTGCTATATGACAATCTGA+GGG + chr1_1:17865202-17865221 None:intergenic 35.0%
AAGGACAGTTGTAACTTCTA+AGG - chr1_1:17865219-17865238 Msa0011900:CDS 35.0%
TATTGTGAATTTGTCCCTAC+TGG - chr1_1:17865319-17865338 Msa0011900:intron 35.0%
TAAGTATTCAACGAGTTGCA+AGG - chr1_1:17865375-17865394 Msa0011900:CDS 35.0%
!! ATCCACTTTGGTGCCATTAA+TGG + chr1_1:17862286-17862305 None:intergenic 40.0%
GATAACTGGACTATCCACTT+TGG + chr1_1:17862298-17862317 None:intergenic 40.0%
! CAGTTATCCAGTCTGTTTTG+CGG - chr1_1:17862310-17862329 Msa0011900:three_prime_UTR 40.0%
AAGCGCTTGTTCAATGTTTC+TGG + chr1_1:17862547-17862566 None:intergenic 40.0%
AAACATTGAACAAGCGCTTC+AGG - chr1_1:17862548-17862567 Msa0011900:three_prime_UTR 40.0%
!!! GCGTAATAGCCTTTTTTCAG+TGG + chr1_1:17862678-17862697 None:intergenic 40.0%
AATGTCAGGAAAGAGTGATG+AGG - chr1_1:17862930-17862949 Msa0011900:intron 40.0%
! ACGCCATCAATTAGAAGTGT+CGG + chr1_1:17863030-17863049 None:intergenic 40.0%
TTGTGAGATTGTTTGGGAGA+AGG - chr1_1:17863294-17863313 Msa0011900:intron 40.0%
GCAATTGAACCATTACTCAG+AGG + chr1_1:17863790-17863809 None:intergenic 40.0%
GGTGAGTATTTAGACAATGG+TGG - chr1_1:17864082-17864101 Msa0011900:intron 40.0%
CACCAGATGCGAAAATTGTT+TGG + chr1_1:17864210-17864229 None:intergenic 40.0%
AGAGTGTACCAGAAAGAGTA+AGG + chr1_1:17864233-17864252 None:intergenic 40.0%
TGGTACACTCTCTTTCTCTT+CGG - chr1_1:17864242-17864261 Msa0011900:intron 40.0%
GCTAACTATTGAAGTCCTTC+CGG - chr1_1:17864469-17864488 Msa0011900:intron 40.0%
AAGTCTTCTCATATACCGGA+AGG + chr1_1:17864487-17864506 None:intergenic 40.0%
! TTTTCCTCTGTTTCGTACTC+CGG + chr1_1:17864937-17864956 None:intergenic 40.0%
AATCACTGATGAGCACTTCT+TGG - chr1_1:17864955-17864974 Msa0011900:intron 40.0%
! CCATGTTGGGGTATTCAAAA+TGG + chr1_1:17864987-17865006 None:intergenic 40.0%
! CCATTTTGAATACCCCAACA+TGG - chr1_1:17864984-17865003 Msa0011900:intron 40.0%
! TTTTGAATACCCCAACATGG+TGG - chr1_1:17864987-17865006 Msa0011900:intron 40.0%
! TGATCCTGAGGATTTTCGTA+CGG - chr1_1:17865012-17865031 Msa0011900:intron 40.0%
! CCTTGCTATATGACAATCTG+AGG + chr1_1:17865203-17865222 None:intergenic 40.0%
CCTCAGATTGTCATATAGCA+AGG - chr1_1:17865200-17865219 Msa0011900:CDS 40.0%
AGTATCATTCTAGCCTCAAG+TGG - chr1_1:17865260-17865279 Msa0011900:intron 40.0%
! GAGTTGCAAGGTTTTTCCTT+TGG - chr1_1:17865387-17865406 Msa0011900:CDS 40.0%
!! GGTGCCATTGATGCCATTAA+TGG - chr1_1:17862270-17862289 Msa0011900:three_prime_UTR 45.0%
!! GGTGCCATTAATGGCATCAA+TGG + chr1_1:17862277-17862296 None:intergenic 45.0%
TGCCATTAATGGCACCAAAG+TGG - chr1_1:17862281-17862300 Msa0011900:three_prime_UTR 45.0%
CGCAAAACAGACTGGATAAC+TGG + chr1_1:17862312-17862331 None:intergenic 45.0%
TTTGAACGGCCCAGATTGAA+AGG - chr1_1:17862358-17862377 Msa0011900:three_prime_UTR 45.0%
TTGAACGGCCCAGATTGAAA+GGG - chr1_1:17862359-17862378 Msa0011900:three_prime_UTR 45.0%
CCAAAAAATGCAATCGCTGC+CGG - chr1_1:17862441-17862460 Msa0011900:three_prime_UTR 45.0%
! TTTGTTATACGAGGCCACAC+CGG + chr1_1:17862463-17862482 None:intergenic 45.0%
ATTGCAGCAGGAAATTACGC+TGG + chr1_1:17862650-17862669 None:intergenic 45.0%
! GCACCGACACTTCTAATTGA+TGG - chr1_1:17863024-17863043 Msa0011900:intron 45.0%
GTGTTGTGTTCGTGCTTCAT+AGG - chr1_1:17863153-17863172 Msa0011900:intron 45.0%
GATAAGCAGTTGAAGGTCCT+GGG + chr1_1:17863618-17863637 None:intergenic 45.0%
GCTAAGGGATAAGCAGTTGA+AGG + chr1_1:17863625-17863644 None:intergenic 45.0%
!! GCTCAACTGGTTTGAGCTAA+GGG + chr1_1:17863640-17863659 None:intergenic 45.0%
!! AGCTCAACTGGTTTGAGCTA+AGG + chr1_1:17863641-17863660 None:intergenic 45.0%
TCTCCAGTTCAACTTCTGGT+CGG + chr1_1:17863765-17863784 None:intergenic 45.0%
CTTCATCATCAGATCCACCA+GGG + chr1_1:17864171-17864190 None:intergenic 45.0%
TCTTCATCATCAGATCCACC+AGG + chr1_1:17864172-17864191 None:intergenic 45.0%
! CGCCAAACAATTTTCGCATC+TGG - chr1_1:17864205-17864224 Msa0011900:intron 45.0%
ATCTGGTGCCTTACTCTTTC+TGG - chr1_1:17864222-17864241 Msa0011900:intron 45.0%
TGATGAGCACTTCTTGGAGA+AGG - chr1_1:17864961-17864980 Msa0011900:intron 45.0%
AGGATCATACCACCATGTTG+GGG + chr1_1:17864999-17865018 None:intergenic 45.0%
CAGGATCATACCACCATGTT+GGG + chr1_1:17865000-17865019 None:intergenic 45.0%
TCAGGATCATACCACCATGT+TGG + chr1_1:17865001-17865020 None:intergenic 45.0%
AACATGGTGGTATGATCCTG+AGG - chr1_1:17865000-17865019 Msa0011900:intron 45.0%
GAGTTATTCGTCTGCATCTG+AGG + chr1_1:17865056-17865075 None:intergenic 45.0%
GGCACAACAAATGCAAGGAA+AGG + chr1_1:17865181-17865200 None:intergenic 45.0%
TCCACTAGACAAACCACTTG+AGG + chr1_1:17865276-17865295 None:intergenic 45.0%
CTCGCTCAAAGAAACCAGTA+GGG + chr1_1:17865336-17865355 None:intergenic 45.0%
CACACATCCGCAAAACAGAC+TGG + chr1_1:17862320-17862339 None:intergenic 50.0%
! TTTTGCGGATGTGTGACACG+TGG - chr1_1:17862325-17862344 Msa0011900:three_prime_UTR 50.0%
TTTGCGGATGTGTGACACGT+GGG - chr1_1:17862326-17862345 Msa0011900:three_prime_UTR 50.0%
!!! CCGGCAGCGATTGCATTTTT+TGG + chr1_1:17862444-17862463 None:intergenic 50.0%
TCGCACTGAACTCATCTCAC+CGG - chr1_1:17862493-17862512 Msa0011900:three_prime_UTR 50.0%
!! TTCAATGTTTCTGGCGCCGA+CGG + chr1_1:17862538-17862557 None:intergenic 50.0%
TCAAGCGCGTTGCATGATAG+GGG + chr1_1:17862617-17862636 None:intergenic 50.0%
CTCAAGCGCGTTGCATGATA+GGG + chr1_1:17862618-17862637 None:intergenic 50.0%
TCAGTGGCGATTATTGCAGC+AGG + chr1_1:17862662-17862681 None:intergenic 50.0%
!! TCTTTGAAGCCTCTTCGTGC+TGG - chr1_1:17862898-17862917 Msa0011900:intron 50.0%
GCTGGTGGAAAAGGAATGTC+AGG - chr1_1:17862916-17862935 Msa0011900:intron 50.0%
!! TAGAAGTGTCGGTGCTACAG+AGG + chr1_1:17863019-17863038 None:intergenic 50.0%
GGATAAGCAGTTGAAGGTCC+TGG + chr1_1:17863619-17863638 None:intergenic 50.0%
CCTAATAAGACCTGGGGGTT+GGG + chr1_1:17863665-17863684 None:intergenic 50.0%
TCCTAATAAGACCTGGGGGT+TGG + chr1_1:17863666-17863685 None:intergenic 50.0%
GAACCGACCAGAAGTTGAAC+TGG - chr1_1:17863759-17863778 Msa0011900:intron 50.0%
GGTCTCTCCAGTTCAACTTC+TGG + chr1_1:17863769-17863788 None:intergenic 50.0%
CTGGAGAGACCTCTGAGTAA+TGG - chr1_1:17863778-17863797 Msa0011900:intron 50.0%
TGTACCGGAGTACGAAACAG+AGG - chr1_1:17864930-17864949 Msa0011900:intron 50.0%
ACTGCCGTACGAAAATCCTC+AGG + chr1_1:17865019-17865038 None:intergenic 50.0%
! CTGAGGGCACAACAAATGCA+AGG + chr1_1:17865186-17865205 None:intergenic 50.0%
! GCCTCAAGTGGTTTGTCTAG+TGG - chr1_1:17865272-17865291 Msa0011900:intron 50.0%
CCTCGCTCAAAGAAACCAGT+AGG + chr1_1:17865337-17865356 None:intergenic 50.0%
!! CCTACTGGTTTCTTTGAGCG+AGG - chr1_1:17865334-17865353 Msa0011900:intron 50.0%
AAATGCAATCGCTGCCGGTG+TGG - chr1_1:17862446-17862465 Msa0011900:three_prime_UTR 55.0%
!! TCAATGTTTCTGGCGCCGAC+GGG + chr1_1:17862537-17862556 None:intergenic 55.0%
GCTCAAGCGCGTTGCATGAT+AGG + chr1_1:17862619-17862638 None:intergenic 55.0%
TTGAAGCCTCTTCGTGCTGG+TGG - chr1_1:17862901-17862920 Msa0011900:intron 55.0%
! CCTTTTCCACCAGCACGAAG+AGG + chr1_1:17862910-17862929 None:intergenic 55.0%
! CCTCTTCGTGCTGGTGGAAA+AGG - chr1_1:17862907-17862926 Msa0011900:intron 55.0%
!! CCCAACCCCCAGGTCTTATT+AGG - chr1_1:17863662-17863681 Msa0011900:CDS 55.0%
GGAAGTGGAGTAAAGCCACC+AGG - chr1_1:17864103-17864122 Msa0011900:intron 55.0%
AGTGGAGTAAAGCCACCAGG+AGG - chr1_1:17864106-17864125 Msa0011900:intron 55.0%
TCAGATCCACCAGGGCCATT+GGG + chr1_1:17864163-17864182 None:intergenic 55.0%
ATCAGATCCACCAGGGCCAT+TGG + chr1_1:17864164-17864183 None:intergenic 55.0%
CTGGGCTCAAACCAGGACGA+AGG + chr1_1:17863600-17863619 None:intergenic 60.0%
! CTTCGTCCTGGTTTGAGCCC+AGG - chr1_1:17863598-17863617 Msa0011900:CDS 60.0%
GAAGGTCCTGGGCTCAAACC+AGG + chr1_1:17863607-17863626 None:intergenic 60.0%
TGGGGGTTGGGTAGCTCAAC+TGG + chr1_1:17863653-17863672 None:intergenic 60.0%
AGTTGAGCTACCCAACCCCC+AGG - chr1_1:17863652-17863671 Msa0011900:CDS 60.0%
GGAGTAAAGCCACCAGGAGG+AGG - chr1_1:17864109-17864128 Msa0011900:intron 60.0%
GTAAAGCCACCAGGAGGAGG+AGG - chr1_1:17864112-17864131 Msa0011900:intron 60.0%
CAGGAGGAGGAGGAGAAGGT+GGG - chr1_1:17864122-17864141 Msa0011900:intron 60.0%
AGGAGGAGGAGGAGAAGGTG+GGG - chr1_1:17864123-17864142 Msa0011900:intron 60.0%
ATCTCACCGGAAACCGCCGC+CGG - chr1_1:17862506-17862525 Msa0011900:three_prime_UTR 65.0%
GAAACTCCGGCGGCGGTTTC+CGG + chr1_1:17862515-17862534 None:intergenic 65.0%
CCTTCTCCTCCTCCTCCTGG+TGG + chr1_1:17864121-17864140 None:intergenic 65.0%
CCACCAGGAGGAGGAGGAGA+AGG - chr1_1:17864118-17864137 Msa0011900:intron 65.0%
CCACCTTCTCCTCCTCCTCC+TGG + chr1_1:17864124-17864143 None:intergenic 65.0%
CCAGGAGGAGGAGGAGAAGG+TGG - chr1_1:17864121-17864140 Msa0011900:intron 65.0%
GGAGGAGGAGGAGAAGGTGG+GGG - chr1_1:17864124-17864143 Msa0011900:intron 65.0%
!! GGTGGTGGTGGCAGTCCCAA+TGG - chr1_1:17864145-17864164 Msa0011900:intron 65.0%
!! CTGGCGCCGACGGGAAACTC+CGG + chr1_1:17862528-17862547 None:intergenic 70.0%
GGAGGAGGAGAAGGTGGGGG+TGG - chr1_1:17864127-17864146 Msa0011900:intron 70.0%
GGAGGAGAAGGTGGGGGTGG+TGG - chr1_1:17864130-17864149 Msa0011900:intron 70.0%
! GGAGAAGGTGGGGGTGGTGG+TGG - chr1_1:17864133-17864152 Msa0011900:intron 70.0%
GGTGGCAGTCCCAATGGCCC+TGG - chr1_1:17864151-17864170 Msa0011900:intron 70.0%
GGCAGTCCCAATGGCCCTGG+TGG - chr1_1:17864154-17864173 Msa0011900:intron 70.0%
CCGACGGGAAACTCCGGCGG+CGG + chr1_1:17862522-17862541 None:intergenic 75.0%
CCGCCGCCGGAGTTTCCCGT+CGG - chr1_1:17862519-17862538 Msa0011900:three_prime_UTR 75.0%
! GCGCCGACGGGAAACTCCGG+CGG + chr1_1:17862525-17862544 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 17862258 17865419 17862258 ID=Msa0011900;Name=Msa0011900
chr1_1 mRNA 17862258 17865419 17862258 ID=Msa0011900-mRNA-1;Parent=Msa0011900;Name=Msa0011900-mRNA-1;_AED=0.12;_eAED=0.12;_QI=0|0.5|0.4|0.8|1|1|5|347|279
chr1_1 exon 17862258 17862865 17862258 ID=Msa0011900-mRNA-1:exon:6522;Parent=Msa0011900-mRNA-1
chr1_1 exon 17863434 17863682 17863434 ID=Msa0011900-mRNA-1:exon:6521;Parent=Msa0011900-mRNA-1
chr1_1 exon 17864726 17864824 17864726 ID=Msa0011900-mRNA-1:exon:6520;Parent=Msa0011900-mRNA-1
chr1_1 exon 17865108 17865276 17865108 ID=Msa0011900-mRNA-1:exon:6519;Parent=Msa0011900-mRNA-1
chr1_1 exon 17865358 17865419 17865358 ID=Msa0011900-mRNA-1:exon:6518;Parent=Msa0011900-mRNA-1
chr1_1 CDS 17865358 17865419 17865358 ID=Msa0011900-mRNA-1:cds;Parent=Msa0011900-mRNA-1
chr1_1 CDS 17865108 17865276 17865108 ID=Msa0011900-mRNA-1:cds;Parent=Msa0011900-mRNA-1
chr1_1 CDS 17864726 17864824 17864726 ID=Msa0011900-mRNA-1:cds;Parent=Msa0011900-mRNA-1
chr1_1 CDS 17863434 17863682 17863434 ID=Msa0011900-mRNA-1:cds;Parent=Msa0011900-mRNA-1
chr1_1 CDS 17862605 17862865 17862605 ID=Msa0011900-mRNA-1:cds;Parent=Msa0011900-mRNA-1
chr1_1 three_prime_UTR 17862258 17862604 17862258 ID=Msa0011900-mRNA-1:three_prime_utr;Parent=Msa0011900-mRNA-1
Gene Sequence

>Msa0011900

ATGGAATTGGATGGTGCCATTGATGCCATTAATGGCACCAAAGTGGATAGTCCAGTTATCCAATCTGAACTCTGCAAGCCTAATCCATTTCCTTTTGAAAAGCCAAAAAATGCAATCGCTGCCGGTGTGGCCTCGTATAACAAACAGCTTACAGTCGCACTGAACTCATCTCACCGGAAACCGCCGCCGGAGTTTCCCGTCGGCGCCAGAAACATTGAACAAGCGCTTCAGATTCGGAATATTAGCATAAGAGATAAACCGTTATTTGGATTGAAATCTTTGAAGCCTCTTCGTGCTGGTGGAAAAGGAATGTCAGGAAAGAGTGATGAGAATTCCCCATGGCAATCTATTACAAATGCAATGGACAAATTTAAGGGACAATCAATAGAAGAAGTATTACGGAAGCAAATTCAAAAAGGTGAGTATTTAGACAATGGTGGAAGTGGAGTAAAGCCACCAGGAGGAGGAGGAGAAGGTGGGGGTGGTGGTGGCAGTCCCAATGGCCCTGGTGGATCTGATGATGAAGAAAGCTATGACACTCGCCAAACAATTTTCGCATCTGGTGCCTTACTCTTTCTGTATATCTATCTCATCATGAGCAAGGAGCTTCTAAGCACAATTTTCGACTTTTTAAGGTTTATAGTTGGCTTAGGTCAGACTAGTCGAATTAAGCGTATCATGGTAAAATTGGGAAAATTGTACCGGAGTACGAAACAGAGGAAAATCACTGATGAGCACTTCTTGGAGAAGGCCATTTTGAATACCCCAACATGGTGGTATGATCCTGAGGATTTTCGTACGGCAGTTAAGAATTACTATGCCTCAGATGCAGACGAATAA
Protein sequence

>Msa0011900

MELDGAIDAINGTKVDSPVIQSELCKPNPFPFEKPKNAIAAGVASYNKQLTVALNSSHRKPPPEFPVGARNIEQALQIRNISIRDKPLFGLKSLKPLRAGGKGMSGKSDENSPWQSITNAMDKFKGQSIEEVLRKQIQKGEYLDNGGSGVKPPGGGGEGGGGGGSPNGPGGSDDEESYDTRQTIFASGALLFLYIYLIMSKELLSTIFDFLRFIVGLGQTSRIKRIMVKLGKLYRSTKQRKITDEHFLEKAILNTPTWWYDPEDFRTAVKNYYASDADE*