AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0436660


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0436660 MtrunA17_Chr4g0070091 97.297 222 5 1 1 222 1 221 7.80e-157 433
Msa0436660 MtrunA17_Chr7g0267151 30.052 193 113 6 51 222 38 229 2.92e-15 72.8
Msa0436660 MtrunA17_Chr1g0177361 31.410 156 95 4 78 222 77 231 7.36e-15 71.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0436660 AT3G26060.1 78.771 179 35 1 43 221 40 215 1.50e-99 288
Msa0436660 AT3G26060.2 78.333 180 35 2 43 221 40 216 1.19e-97 283
Msa0436660 AT3G26060.3 85.135 148 22 0 74 221 6 153 1.64e-94 273
Msa0436660 AT5G06290.2 34.177 158 88 5 78 222 83 237 4.14e-18 80.5
Msa0436660 AT5G06290.1 35.256 156 89 4 78 222 83 237 5.72e-18 80.5
Msa0436660 AT3G11630.1 33.974 156 91 4 78 222 76 230 6.79e-17 77.4

Find 84 sgRNAs with CRISPR-Local

Find 193 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCGAAACAAGATTGGCTTTC+TGG 0.121852 3_2:+90347853 None:intergenic
GTTGAGTTGGGGTGAGAATT+TGG 0.222433 3_2:-90347881 Msa0436660:five_prime_UTR
TCATCACTCAACAAGGTAAA+TGG 0.285138 3_2:+90345822 None:intergenic
AAGGGATACGGAAGCATTAA+AGG 0.286619 3_2:+90345634 None:intergenic
CACAGGTTTCCCTTTGTACT+TGG 0.303836 3_2:+90347340 None:intergenic
GGAGTGCCTGGCGATTTCTT+TGG 0.309530 3_2:-90345774 Msa0436660:CDS
AAATGGAAGCTTGTACTTCT+TGG 0.312396 3_2:+90345839 None:intergenic
CTTAATTACTAGGTTGAGTT+GGG 0.323258 3_2:-90347893 Msa0436660:five_prime_UTR
TACGGAAGCATTAAAGGCTT+TGG 0.346601 3_2:+90345640 None:intergenic
GATTTCTTTGGATCATTGCC+TGG 0.346798 3_2:-90345762 Msa0436660:CDS
AATTGGTAGGGAGAGTGATC+AGG 0.347523 3_2:+90347673 None:intergenic
ATAGTTACATACTTGAATTA+AGG 0.359749 3_2:+90345608 None:intergenic
GCAGAGGTTGTTGGGATAAG+TGG 0.361226 3_2:-90345961 Msa0436660:CDS
CTCTTCATCTTCCATGGCTA+AGG 0.389484 3_2:-90347700 Msa0436660:CDS
GACTCACTGTCTTGCCATCC+TGG 0.400499 3_2:+90347366 None:intergenic
GGTGGTAGATAGAGATAGAT+AGG 0.404761 3_2:+90347765 None:intergenic
CATACTTGAATTAAGGCAAA+AGG 0.409250 3_2:+90345615 None:intergenic
CTTACCTGTTTGGTACAGCC+AGG 0.410343 3_2:+90347287 None:intergenic
AAGCAGGAGCAGAGGTTGTT+GGG 0.412350 3_2:-90345969 Msa0436660:CDS
AGGTGTAGAAGAAGTGGTTT+TGG 0.413165 3_2:+90347548 None:intergenic
GAAAGCCAATCTTGTTTCGC+TGG 0.434729 3_2:-90347850 Msa0436660:five_prime_UTR
AGAGTTACAACTTAATTACT+AGG 0.440665 3_2:-90347903 None:intergenic
CAGCCAGGGGTCTCATCAGC+AGG 0.442678 3_2:+90347302 None:intergenic
AAGGCTTTGGAGTAGTTTCA+AGG 0.453537 3_2:+90345653 None:intergenic
ACTTTGCTCTTCATCTTCCA+TGG 0.463410 3_2:-90347706 Msa0436660:CDS
AATAAATGTGGGGAAAGAAT+TGG 0.464668 3_2:+90347656 None:intergenic
AGGAAAGAGTGGGGAGTGCC+TGG 0.465381 3_2:-90345786 Msa0436660:CDS
AGAGGGAAAGTGTATACATT+GGG 0.465820 3_2:+90347800 None:intergenic
AAAGCAGGAGCAGAGGTTGT+TGG 0.469493 3_2:-90345970 Msa0436660:CDS
TACCCTGCTGATGAGACCCC+TGG 0.472668 3_2:-90347305 Msa0436660:CDS
ATTGGTAGGGAGAGTGATCA+GGG 0.476674 3_2:+90347674 None:intergenic
ACACCTTCTTCATTCAAAAG+AGG 0.479717 3_2:-90347531 Msa0436660:CDS
GACCCCTGGCTGTACCAAAC+AGG 0.480415 3_2:-90347291 Msa0436660:intron
ACTTAATTACTAGGTTGAGT+TGG 0.489845 3_2:-90347894 Msa0436660:five_prime_UTR
TGAAGCCAGCGAAACAAGAT+TGG 0.493039 3_2:+90347845 None:intergenic
TTACCTGTTTGGTACAGCCA+GGG 0.504190 3_2:+90347288 None:intergenic
TATGAGAAGTTCAAGAAAGC+AGG 0.505377 3_2:-90345985 Msa0436660:CDS
TCTCTATCTACCACCCCAAA+AGG 0.515636 3_2:-90347757 Msa0436660:five_prime_UTR
ACAGTGTTTGTGATAATTGA+AGG 0.520796 3_2:+90345458 None:intergenic
ATACTTGAATTAAGGCAAAA+GGG 0.521615 3_2:+90345616 None:intergenic
GATAGGTTATGATATGAGAG+AGG 0.526982 3_2:+90347782 None:intergenic
TGAGTCTCTCCAAGTACAAA+GGG 0.527088 3_2:-90347349 Msa0436660:CDS
TTTACCTTGTTGAGTGATGA+GGG 0.533791 3_2:-90345819 Msa0436660:CDS
ATTTACCTTGTTGAGTGATG+AGG 0.534596 3_2:-90345820 Msa0436660:CDS
GAATTAAGGCAAAAGGGATA+CGG 0.536094 3_2:+90345622 None:intergenic
TGAAGAAGGTGTAGAAGAAG+TGG 0.541255 3_2:+90347542 None:intergenic
ACAAGATTGGCTTTCTGGCG+TGG 0.542842 3_2:+90347858 None:intergenic
GCAAATGAGCAGGTGAGTAA+AGG 0.545486 3_2:-90347419 Msa0436660:intron
AATGATCCAAAGAAATCGCC+AGG 0.551351 3_2:+90345768 None:intergenic
ATTTCTTTGGATCATTGCCT+GGG 0.553738 3_2:-90345761 Msa0436660:CDS
TGGTCTTTCAACGTGAAAGC+CGG 0.553851 3_2:+90347386 None:intergenic
TAACAAGGTAAGGAAAGAGT+GGG 0.554128 3_2:-90345796 Msa0436660:CDS
GGCTTTCACGTTGAAAGACC+AGG 0.554297 3_2:-90347384 Msa0436660:CDS
GAGAGGGAAAGTGTATACAT+TGG 0.554364 3_2:+90347799 None:intergenic
TATACATTGGGTTGAGTGGG+TGG 0.556458 3_2:+90347812 None:intergenic
AGTGTATACATTGGGTTGAG+TGG 0.565184 3_2:+90347808 None:intergenic
GTTCAAGAAAGCAGGAGCAG+AGG 0.567377 3_2:-90345977 Msa0436660:CDS
ATATGAATCCCTAAAAGCGC+AGG 0.567632 3_2:+90346005 None:intergenic
GTGATGAGGGTAACAAGGTA+AGG 0.567983 3_2:-90345806 Msa0436660:CDS
ATGTGGGGAAAGAATTGGTA+GGG 0.570965 3_2:+90347661 None:intergenic
TACCTGTTTGGTACAGCCAG+GGG 0.571231 3_2:+90347289 None:intergenic
GAGTAAAGGTTCAAAGCCAC+CGG 0.580619 3_2:-90347405 Msa0436660:CDS
TGTTTGATCTCTATATGAGA+AGG 0.582902 3_2:+90345509 None:intergenic
ATAGGTTATGATATGAGAGA+GGG 0.586172 3_2:+90347783 None:intergenic
TCTTTCAACGTGAAAGCCGG+TGG 0.591762 3_2:+90347389 None:intergenic
GTGTATACATTGGGTTGAGT+GGG 0.592798 3_2:+90347809 None:intergenic
GTAACAAGGTAAGGAAAGAG+TGG 0.594096 3_2:-90345797 Msa0436660:CDS
AATCAGCTACTTAATTACAA+TGG 0.604161 3_2:+90345572 None:intergenic
GTGAGTCTCTCCAAGTACAA+AGG 0.604417 3_2:-90347350 Msa0436660:CDS
GGGTAGAAATAAACAACCAC+AGG 0.604779 3_2:+90347323 None:intergenic
GATCAGGGAAACCTTAGCCA+TGG 0.605970 3_2:+90347689 None:intergenic
AGAACATAAGTCTCTCTCCC+AGG 0.610669 3_2:+90345744 None:intergenic
TTAATTACTAGGTTGAGTTG+GGG 0.611650 3_2:-90347892 Msa0436660:five_prime_UTR
TGGAAGAATGGGATAACTTG+AGG 0.612538 3_2:+90347574 None:intergenic
ACAATTATAATGTCTCGCGA+TGG 0.616434 3_2:-90345489 Msa0436660:three_prime_UTR
AATGTGGGGAAAGAATTGGT+AGG 0.616864 3_2:+90347660 None:intergenic
GTTGAGTGATGAGGGTAACA+AGG 0.618582 3_2:-90345811 Msa0436660:CDS
AACAAGGTAAGGAAAGAGTG+GGG 0.648925 3_2:-90345795 Msa0436660:CDS
AGACGATTCTTCCTCTCACA+AGG 0.659575 3_2:-90345938 Msa0436660:intron
AGCCAGGGGTCTCATCAGCA+GGG 0.668167 3_2:+90347303 None:intergenic
GTTACCCTCATCACTCAACA+AGG 0.674521 3_2:+90345815 None:intergenic
TTCACGTTGAAAGACCAGGA+TGG 0.687451 3_2:-90347380 Msa0436660:CDS
CAAGTACAAAGGGAAACCTG+TGG 0.709350 3_2:-90347339 Msa0436660:CDS
TTTGAGGGTGAATAAATGTG+GGG 0.731556 3_2:+90347646 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAAGTTTATAATCCATAAA+TGG - chr3_2:90346077-90346096 Msa0436660:intron 15.0%
!! AAAAAATTGTTTACCTAAAT+AGG - chr3_2:90346826-90346845 Msa0436660:intron 15.0%
!! AATAATCAGTAGATAAATAT+TGG + chr3_2:90347121-90347140 None:intergenic 15.0%
!!! TTTTATGAATTTATTATTGC+AGG - chr3_2:90347272-90347291 Msa0436660:intron 15.0%
!!! TCATAACTACTTTTTGTAAT+AGG - chr3_2:90346395-90346414 Msa0436660:intron 20.0%
!!! TGATATAATTGATTCCAATA+TGG - chr3_2:90347188-90347207 Msa0436660:intron 20.0%
!! ATAGTTACATACTTGAATTA+AGG + chr3_2:90347695-90347714 None:intergenic 20.0%
!! TTACGTTTTCTTTTCCTTTT+GGG + chr3_2:90345560-90345579 None:intergenic 25.0%
! CCAAAAAATAGAGAATTGAA+TGG + chr3_2:90345706-90345725 None:intergenic 25.0%
!!! CCATTCAATTCTCTATTTTT+TGG - chr3_2:90345703-90345722 Msa0436660:CDS 25.0%
! AAACAATGCATATCCATTTA+TGG + chr3_2:90346093-90346112 None:intergenic 25.0%
! ATTGTTTGTTCTAGTGAAAA+GGG - chr3_2:90346106-90346125 Msa0436660:intron 25.0%
! TTATGTTAGATTGTTAGAGT+TGG - chr3_2:90346155-90346174 Msa0436660:intron 25.0%
! TAACTAATTAACTTCCCAAA+AGG + chr3_2:90346323-90346342 None:intergenic 25.0%
!!! TTTTGGGAAGTTAATTAGTT+AGG - chr3_2:90346322-90346341 Msa0436660:intron 25.0%
!!! AATTTGTTGGTTAAGTTAGT+CGG - chr3_2:90346352-90346371 Msa0436660:intron 25.0%
! TCTTTCATCTCTTTATTACA+AGG + chr3_2:90346442-90346461 None:intergenic 25.0%
!! AAAATTAAGTCAGTGCTATT+AGG - chr3_2:90346681-90346700 Msa0436660:intron 25.0%
!! AAATTAAGTCAGTGCTATTA+GGG - chr3_2:90346682-90346701 Msa0436660:intron 25.0%
! ATGAATCAATAGATCATAGT+TGG - chr3_2:90346726-90346745 Msa0436660:intron 25.0%
!! ATCATAGTTGGTATATATGT+TGG - chr3_2:90346738-90346757 Msa0436660:intron 25.0%
! TAAAACACCCTGTTTAAAAA+CGG + chr3_2:90346879-90346898 None:intergenic 25.0%
!!! TAAAGCAATTCTAAAATGTG+TGG + chr3_2:90347055-90347074 None:intergenic 25.0%
!! AATTGATTCCAATATGGTAA+AGG - chr3_2:90347194-90347213 Msa0436660:intron 25.0%
! GCAAATACTTGATATAGTTA+AGG - chr3_2:90347243-90347262 Msa0436660:intron 25.0%
!!! CAATGCATTGGTTAATTAAT+TGG + chr3_2:90347422-90347441 None:intergenic 25.0%
! ACTTATGTTCTTGACAAAAA+TGG - chr3_2:90347568-90347587 Msa0436660:CDS 25.0%
! ATACTTGAATTAAGGCAAAA+GGG + chr3_2:90347687-90347706 None:intergenic 25.0%
! AATCAGCTACTTAATTACAA+TGG + chr3_2:90347731-90347750 None:intergenic 25.0%
!! ATATCAGTATCTTTTGCATA+TGG - chr3_2:90347868-90347887 Msa0436660:five_prime_UTR 25.0%
! CTTAATTACTAGGTTGAGTT+GGG - chr3_2:90345407-90345426 Msa0436660:three_prime_UTR 30.0%
! TTAATTACTAGGTTGAGTTG+GGG - chr3_2:90345408-90345427 Msa0436660:three_prime_UTR 30.0%
ATAGGTTATGATATGAGAGA+GGG + chr3_2:90345520-90345539 None:intergenic 30.0%
! TACGTTTTCTTTTCCTTTTG+GGG + chr3_2:90345559-90345578 None:intergenic 30.0%
! GTTACGTTTTCTTTTCCTTT+TGG + chr3_2:90345561-90345580 None:intergenic 30.0%
AATAAATGTGGGGAAAGAAT+TGG + chr3_2:90345647-90345666 None:intergenic 30.0%
!! TTTTGAGGGTGAATAAATGT+GGG + chr3_2:90345658-90345677 None:intergenic 30.0%
!! GTGATGATGATATGTTTTGA+GGG + chr3_2:90345672-90345691 None:intergenic 30.0%
!! AGTGATGATGATATGTTTTG+AGG + chr3_2:90345673-90345692 None:intergenic 30.0%
! AAACCTCTTTTGAATGAAGA+AGG + chr3_2:90345775-90345794 None:intergenic 30.0%
! ATTGTGTGAATAAAGTACCT+TGG + chr3_2:90345806-90345825 None:intergenic 30.0%
CATTAAATTCAAAATGCAGG+TGG + chr3_2:90345861-90345880 None:intergenic 30.0%
! CACCTGCATTTTGAATTTAA+TGG - chr3_2:90345859-90345878 Msa0436660:intron 30.0%
TGCCATTAAATTCAAAATGC+AGG + chr3_2:90345864-90345883 None:intergenic 30.0%
CATTGTTTGTTCTAGTGAAA+AGG - chr3_2:90346105-90346124 Msa0436660:intron 30.0%
! TGTTAGAGTTGGTTAGTATT+TGG - chr3_2:90346166-90346185 Msa0436660:intron 30.0%
ACATATGTACAAGACTTTCA+AGG + chr3_2:90346529-90346548 None:intergenic 30.0%
AAGACTAATATTCTGGGTAA+TGG + chr3_2:90346583-90346602 None:intergenic 30.0%
GATAGCAAGACTAATATTCT+GGG + chr3_2:90346589-90346608 None:intergenic 30.0%
AGATAGCAAGACTAATATTC+TGG + chr3_2:90346590-90346609 None:intergenic 30.0%
TCAACCATGCAACAATAATT+TGG - chr3_2:90346609-90346628 Msa0436660:intron 30.0%
CAACCATGCAACAATAATTT+GGG - chr3_2:90346610-90346629 Msa0436660:intron 30.0%
!! TGGTATATATGTTGGTTTAG+AGG - chr3_2:90346746-90346765 Msa0436660:intron 30.0%
AATATTCATTGTCATTGCAC+CGG + chr3_2:90346789-90346808 None:intergenic 30.0%
ATTGTTTACCTAAATAGGAC+AGG - chr3_2:90346831-90346850 Msa0436660:intron 30.0%
TTGTTTACCTAAATAGGACA+GGG - chr3_2:90346832-90346851 Msa0436660:intron 30.0%
AAAACACCCTGTTTAAAAAC+GGG + chr3_2:90346878-90346897 None:intergenic 30.0%
GAGAAATGAAATATTGCAGA+AGG + chr3_2:90347033-90347052 None:intergenic 30.0%
CTTCATAAACAACTACTGTT+AGG + chr3_2:90347163-90347182 None:intergenic 30.0%
CTAACAGTAGTTGTTTATGA+AGG - chr3_2:90347161-90347180 Msa0436660:intron 30.0%
CATACTTGAATTAAGGCAAA+AGG + chr3_2:90347688-90347707 None:intergenic 30.0%
TGTTTGATCTCTATATGAGA+AGG + chr3_2:90347794-90347813 None:intergenic 30.0%
ACAGTGTTTGTGATAATTGA+AGG + chr3_2:90347845-90347864 None:intergenic 30.0%
! AGAGGGAAAGTGTATACATT+GGG + chr3_2:90345503-90345522 None:intergenic 35.0%
GATAGGTTATGATATGAGAG+AGG + chr3_2:90345521-90345540 None:intergenic 35.0%
TTTGAGGGTGAATAAATGTG+GGG + chr3_2:90345657-90345676 None:intergenic 35.0%
!!! GTTTTGAGGGTGAATAAATG+TGG + chr3_2:90345659-90345678 None:intergenic 35.0%
!!! GGTTTTGGAAATGGAAGAAT+GGG + chr3_2:90345740-90345759 None:intergenic 35.0%
!!! TGGTTTTGGAAATGGAAGAA+TGG + chr3_2:90345741-90345760 None:intergenic 35.0%
!!! AGAAGAAGTGGTTTTGGAAA+TGG + chr3_2:90345749-90345768 None:intergenic 35.0%
ACACCTTCTTCATTCAAAAG+AGG - chr3_2:90345769-90345788 Msa0436660:CDS 35.0%
!! AAGAGGTTTCATTTTTGCCA+AGG - chr3_2:90345786-90345805 Msa0436660:CDS 35.0%
GAATTTAATGGCAAATGAGC+AGG - chr3_2:90345871-90345890 Msa0436660:intron 35.0%
!!! CTTTTTTCTCCTTACCTGTT+TGG + chr3_2:90346026-90346045 None:intergenic 35.0%
! GAGTTGGTTAGTATTTGGAA+TGG - chr3_2:90346171-90346190 Msa0436660:intron 35.0%
! TGGTTAGTATTTGGAATGGA+TGG - chr3_2:90346175-90346194 Msa0436660:intron 35.0%
TGTACAAGACTTTCAAGGAA+AGG + chr3_2:90346524-90346543 None:intergenic 35.0%
GTTCCCAAATTATTGTTGCA+TGG + chr3_2:90346616-90346635 None:intergenic 35.0%
GCATTACTGCTAAGATATTG+TGG + chr3_2:90346659-90346678 None:intergenic 35.0%
!! TTTAGAGCCCGTTTTTAAAC+AGG - chr3_2:90346868-90346887 Msa0436660:intron 35.0%
!! TTAGAGCCCGTTTTTAAACA+GGG - chr3_2:90346869-90346888 Msa0436660:intron 35.0%
GAAAAGGCTTCAAGCATTAT+CGG + chr3_2:90346909-90346928 None:intergenic 35.0%
! ATAATGCTTGAAGCCTTTTC+AGG - chr3_2:90346909-90346928 Msa0436660:intron 35.0%
!!! CCTGTTTTTACAGCTTTGTA+GGG - chr3_2:90346940-90346959 Msa0436660:intron 35.0%
ATTTGAGAACTCTTCTCATG+TGG + chr3_2:90347093-90347112 None:intergenic 35.0%
CAACTACTGTTAGGAATTAG+AGG + chr3_2:90347154-90347173 None:intergenic 35.0%
ATTCCAATATGGTAAAGGCA+TGG - chr3_2:90347199-90347218 Msa0436660:intron 35.0%
ATTCCATGCCTTTACCATAT+TGG + chr3_2:90347205-90347224 None:intergenic 35.0%
TATGAGAAGTTCAAGAAAGC+AGG - chr3_2:90347315-90347334 Msa0436660:CDS 35.0%
CTACATTTCATGCAATGCAT+TGG + chr3_2:90347434-90347453 None:intergenic 35.0%
CAATGCATTGCATGAAATGT+AGG - chr3_2:90347432-90347451 Msa0436660:intron 35.0%
AAATGGAAGCTTGTACTTCT+TGG + chr3_2:90347464-90347483 None:intergenic 35.0%
TCATCACTCAACAAGGTAAA+TGG + chr3_2:90347481-90347500 None:intergenic 35.0%
ATTTACCTTGTTGAGTGATG+AGG - chr3_2:90347480-90347499 Msa0436660:intron 35.0%
TTTACCTTGTTGAGTGATGA+GGG - chr3_2:90347481-90347500 Msa0436660:intron 35.0%
TAACAAGGTAAGGAAAGAGT+GGG - chr3_2:90347504-90347523 Msa0436660:intron 35.0%
ATTTCTTTGGATCATTGCCT+GGG - chr3_2:90347539-90347558 Msa0436660:CDS 35.0%
GAATTAAGGCAAAAGGGATA+CGG + chr3_2:90347681-90347700 None:intergenic 35.0%
!! GTAGCTGATTTTGAACACTT+TGG - chr3_2:90347741-90347760 Msa0436660:five_prime_UTR 35.0%
ACAATTATAATGTCTCGCGA+TGG - chr3_2:90347811-90347830 Msa0436660:five_prime_UTR 35.0%
!! GTGTATACATTGGGTTGAGT+GGG + chr3_2:90345494-90345513 None:intergenic 40.0%
!! AGTGTATACATTGGGTTGAG+TGG + chr3_2:90345495-90345514 None:intergenic 40.0%
! GAGAGGGAAAGTGTATACAT+TGG + chr3_2:90345504-90345523 None:intergenic 40.0%
GGTGGTAGATAGAGATAGAT+AGG + chr3_2:90345538-90345557 None:intergenic 40.0%
!! GTTTTCTTTTCCTTTTGGGG+TGG + chr3_2:90345556-90345575 None:intergenic 40.0%
ACTTTGCTCTTCATCTTCCA+TGG - chr3_2:90345594-90345613 Msa0436660:three_prime_UTR 40.0%
ATGTGGGGAAAGAATTGGTA+GGG + chr3_2:90345642-90345661 None:intergenic 40.0%
AATGTGGGGAAAGAATTGGT+AGG + chr3_2:90345643-90345662 None:intergenic 40.0%
TGGAAGAATGGGATAACTTG+AGG + chr3_2:90345729-90345748 None:intergenic 40.0%
! AGGTGTAGAAGAAGTGGTTT+TGG + chr3_2:90345755-90345774 None:intergenic 40.0%
! TGAAGAAGGTGTAGAAGAAG+TGG + chr3_2:90345761-90345780 None:intergenic 40.0%
TGAGTCTCTCCAAGTACAAA+GGG - chr3_2:90345951-90345970 Msa0436660:CDS 40.0%
GGGTAGAAATAAACAACCAC+AGG + chr3_2:90345980-90345999 None:intergenic 40.0%
TGTTCTAGTGAAAAGGGAAG+AGG - chr3_2:90346112-90346131 Msa0436660:intron 40.0%
TACTTCCCTTGTGTTAGTTC+TGG - chr3_2:90346293-90346312 Msa0436660:intron 40.0%
!!! TTAGTTCTGGCAGACCTTTT+GGG - chr3_2:90346306-90346325 Msa0436660:intron 40.0%
GTTAGGTCTCGTCAATTTGT+TGG - chr3_2:90346339-90346358 Msa0436660:intron 40.0%
! TGGGTAATGGCTGTTTGTTA+GGG + chr3_2:90346570-90346589 None:intergenic 40.0%
AACTTGATGTGCAGTTACTG+TGG - chr3_2:90346633-90346652 Msa0436660:intron 40.0%
!!! GCCTGTTTTTACAGCTTTGT+AGG - chr3_2:90346939-90346958 Msa0436660:intron 40.0%
CCCTACAAAGCTGTAAAAAC+AGG + chr3_2:90346943-90346962 None:intergenic 40.0%
! ATATGAATCCCTAAAAGCGC+AGG + chr3_2:90347298-90347317 None:intergenic 40.0%
TCCTCTCACAAGGTAAAACT+TGG - chr3_2:90347372-90347391 Msa0436660:CDS 40.0%
! TCCAAGTTTTACCTTGTGAG+AGG + chr3_2:90347376-90347395 None:intergenic 40.0%
GTAACAAGGTAAGGAAAGAG+TGG - chr3_2:90347503-90347522 Msa0436660:intron 40.0%
AACAAGGTAAGGAAAGAGTG+GGG - chr3_2:90347505-90347524 Msa0436660:intron 40.0%
AATGATCCAAAGAAATCGCC+AGG + chr3_2:90347535-90347554 None:intergenic 40.0%
GATTTCTTTGGATCATTGCC+TGG - chr3_2:90347538-90347557 Msa0436660:CDS 40.0%
!!! CATCGATATGCTTTTCAGGT+TGG + chr3_2:90347624-90347643 None:intergenic 40.0%
! GTCTCATCGATATGCTTTTC+AGG + chr3_2:90347628-90347647 None:intergenic 40.0%
!! AAGGCTTTGGAGTAGTTTCA+AGG + chr3_2:90347650-90347669 None:intergenic 40.0%
!! TACGGAAGCATTAAAGGCTT+TGG + chr3_2:90347663-90347682 None:intergenic 40.0%
!! AAGGGATACGGAAGCATTAA+AGG + chr3_2:90347669-90347688 None:intergenic 40.0%
!! GTTGAGTTGGGGTGAGAATT+TGG - chr3_2:90345419-90345438 Msa0436660:three_prime_UTR 45.0%
!! GCGAAACAAGATTGGCTTTC+TGG + chr3_2:90345450-90345469 None:intergenic 45.0%
! GAAAGCCAATCTTGTTTCGC+TGG - chr3_2:90345450-90345469 Msa0436660:three_prime_UTR 45.0%
TGAAGCCAGCGAAACAAGAT+TGG + chr3_2:90345458-90345477 None:intergenic 45.0%
!! TATACATTGGGTTGAGTGGG+TGG + chr3_2:90345491-90345510 None:intergenic 45.0%
TCTCTATCTACCACCCCAAA+AGG - chr3_2:90345543-90345562 Msa0436660:three_prime_UTR 45.0%
CTCTTCATCTTCCATGGCTA+AGG - chr3_2:90345600-90345619 Msa0436660:three_prime_UTR 45.0%
ATTGGTAGGGAGAGTGATCA+GGG + chr3_2:90345629-90345648 None:intergenic 45.0%
AATTGGTAGGGAGAGTGATC+AGG + chr3_2:90345630-90345649 None:intergenic 45.0%
GCAAATGAGCAGGTGAGTAA+AGG - chr3_2:90345881-90345900 Msa0436660:intron 45.0%
GAGTAAAGGTTCAAAGCCAC+CGG - chr3_2:90345895-90345914 Msa0436660:intron 45.0%
TGGTCTTTCAACGTGAAAGC+CGG + chr3_2:90345917-90345936 None:intergenic 45.0%
TTCACGTTGAAAGACCAGGA+TGG - chr3_2:90345920-90345939 Msa0436660:intron 45.0%
GTGAGTCTCTCCAAGTACAA+AGG - chr3_2:90345950-90345969 Msa0436660:CDS 45.0%
CACAGGTTTCCCTTTGTACT+TGG + chr3_2:90345963-90345982 None:intergenic 45.0%
CAAGTACAAAGGGAAACCTG+TGG - chr3_2:90345961-90345980 Msa0436660:CDS 45.0%
TTACCTGTTTGGTACAGCCA+GGG + chr3_2:90346015-90346034 None:intergenic 45.0%
GTGAAAAGGGAAGAGGTGAA+TGG - chr3_2:90346119-90346138 Msa0436660:intron 45.0%
GTCTGCCAGAACTAACACAA+GGG + chr3_2:90346301-90346320 None:intergenic 45.0%
!!! GTTAGTTCTGGCAGACCTTT+TGG - chr3_2:90346305-90346324 Msa0436660:intron 45.0%
! CTGGGTAATGGCTGTTTGTT+AGG + chr3_2:90346571-90346590 None:intergenic 45.0%
! TAGAGGCACAAGAGTCAATG+TGG - chr3_2:90346763-90346782 Msa0436660:intron 45.0%
ACACGATCCCTGTCCTATTT+AGG + chr3_2:90346842-90346861 None:intergenic 45.0%
AGGCTTCAAGCATTATCGGA+CGG + chr3_2:90346905-90346924 None:intergenic 45.0%
AGCTGTAAAAACAGGCTACC+CGG + chr3_2:90346935-90346954 None:intergenic 45.0%
AGACGATTCTTCCTCTCACA+AGG - chr3_2:90347362-90347381 Msa0436660:CDS 45.0%
GTTACCCTCATCACTCAACA+AGG + chr3_2:90347488-90347507 None:intergenic 45.0%
GTTGAGTGATGAGGGTAACA+AGG - chr3_2:90347489-90347508 Msa0436660:intron 45.0%
GTGATGAGGGTAACAAGGTA+AGG - chr3_2:90347494-90347513 Msa0436660:intron 45.0%
AGAACATAAGTCTCTCTCCC+AGG + chr3_2:90347559-90347578 None:intergenic 45.0%
!! ACAAGATTGGCTTTCTGGCG+TGG + chr3_2:90345445-90345464 None:intergenic 50.0%
GATCAGGGAAACCTTAGCCA+TGG + chr3_2:90345614-90345633 None:intergenic 50.0%
TCTTTCAACGTGAAAGCCGG+TGG + chr3_2:90345914-90345933 None:intergenic 50.0%
GGCTTTCACGTTGAAAGACC+AGG - chr3_2:90345916-90345935 Msa0436660:intron 50.0%
TACCTGTTTGGTACAGCCAG+GGG + chr3_2:90346014-90346033 None:intergenic 50.0%
CTTACCTGTTTGGTACAGCC+AGG + chr3_2:90346016-90346035 None:intergenic 50.0%
CTGGCTGTACCAAACAGGTA+AGG - chr3_2:90346014-90346033 Msa0436660:intron 50.0%
GGTCTGCCAGAACTAACACA+AGG + chr3_2:90346302-90346321 None:intergenic 50.0%
GCTTCAAGCATTATCGGACG+GGG + chr3_2:90346903-90346922 None:intergenic 50.0%
GGCTTCAAGCATTATCGGAC+GGG + chr3_2:90346904-90346923 None:intergenic 50.0%
!! TGCTTGAAGCCTTTTCAGGC+CGG - chr3_2:90346913-90346932 Msa0436660:intron 50.0%
! CAGCTTTGTAGGGTCAACCT+CGG - chr3_2:90346950-90346969 Msa0436660:intron 50.0%
GATCTTCTACATCCTCACCG+AGG + chr3_2:90346970-90346989 None:intergenic 50.0%
! TATTGCAGGCCTGCGCTTTT+AGG - chr3_2:90347286-90347305 Msa0436660:intron 50.0%
! ATTGCAGGCCTGCGCTTTTA+GGG - chr3_2:90347287-90347306 Msa0436660:intron 50.0%
GTTCAAGAAAGCAGGAGCAG+AGG - chr3_2:90347323-90347342 Msa0436660:CDS 50.0%
AAAGCAGGAGCAGAGGTTGT+TGG - chr3_2:90347330-90347349 Msa0436660:CDS 50.0%
AAGCAGGAGCAGAGGTTGTT+GGG - chr3_2:90347331-90347350 Msa0436660:CDS 50.0%
GCAGAGGTTGTTGGGATAAG+TGG - chr3_2:90347339-90347358 Msa0436660:CDS 50.0%
GACTCACTGTCTTGCCATCC+TGG + chr3_2:90345937-90345956 None:intergenic 55.0%
GGCACAAGAGTCAATGTGGC+CGG - chr3_2:90346767-90346786 Msa0436660:intron 55.0%
!! GCTTGAAGCCTTTTCAGGCC+GGG - chr3_2:90346914-90346933 Msa0436660:intron 55.0%
TTGTAGGGTCAACCTCGGTG+AGG - chr3_2:90346955-90346974 Msa0436660:intron 55.0%
! GGAGTGCCTGGCGATTTCTT+TGG - chr3_2:90347526-90347545 Msa0436660:CDS 55.0%
TACCCTGCTGATGAGACCCC+TGG - chr3_2:90345995-90346014 Msa0436660:CDS 60.0%
AGCCAGGGGTCTCATCAGCA+GGG + chr3_2:90346000-90346019 None:intergenic 60.0%
GACCCCTGGCTGTACCAAAC+AGG - chr3_2:90346009-90346028 Msa0436660:CDS 60.0%
ACAGGCTACCCGGCCTGAAA+AGG + chr3_2:90346925-90346944 None:intergenic 60.0%
!! AGGAAAGAGTGGGGAGTGCC+TGG - chr3_2:90347514-90347533 Msa0436660:intron 60.0%
CAGCCAGGGGTCTCATCAGC+AGG + chr3_2:90346001-90346020 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr3_2 gene 90345407 90347915 90345407 ID=Msa0436660;Name=Msa0436660
chr3_2 mRNA 90345407 90347915 90345407 ID=Msa0436660-mRNA-1;Parent=Msa0436660;Name=Msa0436660-mRNA-1;_AED=0.01;_eAED=0.01;_QI=179|1|1|1|1|1|4|243|222
chr3_2 exon 90345407 90345868 90345407 ID=Msa0436660-mRNA-1:exon:26846;Parent=Msa0436660-mRNA-1
chr3_2 exon 90345939 90346028 90345939 ID=Msa0436660-mRNA-1:exon:26845;Parent=Msa0436660-mRNA-1
chr3_2 exon 90347292 90347429 90347292 ID=Msa0436660-mRNA-1:exon:26844;Parent=Msa0436660-mRNA-1
chr3_2 exon 90347515 90347915 90347515 ID=Msa0436660-mRNA-1:exon:26843;Parent=Msa0436660-mRNA-1
chr3_2 five_prime_UTR 90347737 90347915 90347737 ID=Msa0436660-mRNA-1:five_prime_utr;Parent=Msa0436660-mRNA-1
chr3_2 CDS 90347515 90347736 90347515 ID=Msa0436660-mRNA-1:cds;Parent=Msa0436660-mRNA-1
chr3_2 CDS 90347292 90347429 90347292 ID=Msa0436660-mRNA-1:cds;Parent=Msa0436660-mRNA-1
chr3_2 CDS 90345939 90346028 90345939 ID=Msa0436660-mRNA-1:cds;Parent=Msa0436660-mRNA-1
chr3_2 CDS 90345650 90345868 90345650 ID=Msa0436660-mRNA-1:cds;Parent=Msa0436660-mRNA-1
chr3_2 three_prime_UTR 90345407 90345649 90345407 ID=Msa0436660-mRNA-1:three_prime_utr;Parent=Msa0436660-mRNA-1
Gene Sequence

>Msa0436660

ATGTTATCACTTTGCTCTTCATCTTCCATGGCTAAGGTTTCCCTGATCACTCTCCCTACCAATTCTTTCCCCACATTTATTCACCCTCAAAACATATCATCATCACTTACTTCTACTCCATTCAATTCTCTATTTTTTGGCCTCAAGTTATCCCATTCTTCCATTTCCAAAACCACTTCTTCTACACCTTCTTCATTCAAAAGAGGTTTCATTTTTGCCAAGGTGAGTAAAGGTTCAAAGCCACCGGCTTTCACGTTGAAAGACCAGGATGGCAAGACAGTGAGTCTCTCCAAGTACAAAGGGAAACCTGTGGTTGTTTATTTCTACCCTGCTGATGAGACCCCTGGCTGTACCAAACAGGCCTGCGCTTTTAGGGATTCATATGAGAAGTTCAAGAAAGCAGGAGCAGAGGTTGTTGGGATAAGTGGAGACGATTCTTCCTCTCACAAGGCATTTGCCAAGAAGTACAAGCTTCCATTTACCTTGTTGAGTGATGAGGGTAACAAGGTAAGGAAAGAGTGGGGAGTGCCTGGCGATTTCTTTGGATCATTGCCTGGGAGAGAGACTTATGTTCTTGACAAAAATGGTGTCGTTCAGCTTGTATACAACAATCAGTTCCAACCTGAAAAGCATATCGATGAGACCTTGAAACTACTCCAAAGCCTTTAA

Protein sequence

>Msa0436660

MLSLCSSSSMAKVSLITLPTNSFPTFIHPQNISSSLTSTPFNSLFFGLKLSHSSISKTTSSTPSSFKRGFIFAKVSKGSKPPAFTLKDQDGKTVSLSKYKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVVGISGDDSSSHKAFAKKYKLPFTLLSDEGNKVRKEWGVPGDFFGSLPGRETYVLDKNGVVQLVYNNQFQPEKHIDETLKLLQSL*