AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0079100


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0079100 MtrunA17_Chr1g0189981 89.590 317 10 3 211 510 1 311 0.0 555
Msa0079100 MtrunA17_Chr1g0189991 98.958 192 2 0 1 192 1 192 3.43e-139 399
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0079100 AT5G38890.1 73.118 186 48 1 7 192 5 188 2.45e-94 285
Msa0079100 AT5G37360.1 55.944 286 101 4 243 509 29 308 2.96e-94 289

Find 143 sgRNAs with CRISPR-Local

Find 528 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATAAAATGAAACTTTGATTT+TGG 0.158497 1_2:+56840989 None:intergenic
AGAATCTTCCTTCGCGTTAA+TGG 0.171524 1_2:-56840953 Msa0079100:exon
TTTGCCTAATTAGGAAAATT+AGG 0.187671 1_2:-56832760 Msa0079100:three_prime_UTR
TATTCTATGTTTGCCTAATT+AGG 0.194396 1_2:-56832769 Msa0079100:three_prime_UTR
TGCATCTCAGTCCAACTTAT+TGG 0.214671 1_2:+56837842 None:intergenic
CTGGATCTGTTGTTATTGTT+AGG 0.248029 1_2:-56840608 Msa0079100:CDS
AATTGGTAGAAGTGGTAGTA+TGG 0.262977 1_2:+56836233 None:intergenic
GGGTCAGGTTCTGTAGAATT+AGG 0.269563 1_2:+56836148 None:intergenic
TTGTTGTCCGCACTTACTTC+AGG 0.277570 1_2:-56833226 Msa0079100:CDS
ACAGTCTACGCTTCCTTAAC+TGG 0.282199 1_2:-56840835 Msa0079100:CDS
GGATTTACATTTACCTGATT+TGG 0.287385 1_2:+56834985 None:intergenic
ACACCCACTAAAGCAAATAT+TGG 0.292433 1_2:-56833581 Msa0079100:CDS
TACCAAACTCATGACATAAT+TGG 0.293175 1_2:-56833061 Msa0079100:three_prime_UTR
AATTTGTTGGAGAAGTGTTT+TGG 0.298490 1_2:+56836126 None:intergenic
GTTTGGTATCTGCTGGAAAA+AGG 0.300905 1_2:-56834882 Msa0079100:CDS
GGGTGTTAAAGAGCAGAATT+TGG 0.305311 1_2:+56836312 None:intergenic
TGCTGTGTATGTTCCTCTTC+CGG 0.308951 1_2:+56840870 None:intergenic
AGAATATGATAATACAATAA+AGG 0.313829 1_2:+56832786 None:intergenic
ATGAGTTTGGTACTTCATTA+TGG 0.335297 1_2:+56833072 None:intergenic
TTCTGTAGAATTAGGCGAAT+TGG 0.337375 1_2:+56836156 None:intergenic
TCTTAGTGCGGTAAAGAGTT+AGG 0.339167 1_2:-56835115 Msa0079100:intron
GGAGTTGGGTTGTTTATTAT+CGG 0.347093 1_2:-56832823 Msa0079100:three_prime_UTR
CACCCACTAAAGCAAATATT+GGG 0.366047 1_2:-56833580 Msa0079100:CDS
TGAAAGAAACTCGACAAATC+TGG 0.366054 1_2:+56832988 None:intergenic
TGACCAGTTACTTCAATAAT+CGG 0.366247 1_2:+56840657 None:intergenic
GGAAACTTTCCAAAGTAATC+AGG 0.370840 1_2:+56836000 None:intergenic
AAATGAGCTTGGTGTTGTTT+CGG 0.377395 1_2:-56839158 Msa0079100:CDS
AGTGGCGAAACTTCCTTTGA+TGG 0.382021 1_2:-56835029 Msa0079100:CDS
GGCCCCAATATTTGCTTTAG+TGG 0.386383 1_2:+56833577 None:intergenic
CTTAGCACTTGGAAGGCGTT+TGG 0.387050 1_2:-56834899 Msa0079100:intron
AGAATTTAGTAGTCACAGTT+AGG 0.397290 1_2:-56832676 Msa0079100:three_prime_UTR
CATGGACCTGTTCCTGAACC+TGG 0.399097 1_2:-56840627 Msa0079100:CDS
TGTTGTCCGCACTTACTTCA+GGG 0.403335 1_2:-56833225 Msa0079100:CDS
AATGGCTTACAGCAATTTGT+TGG 0.404011 1_2:+56836113 None:intergenic
TGCCAATTATGTCATGAGTT+TGG 0.409945 1_2:+56833059 None:intergenic
TTGGCAGGCAGCAAGACGTT+AGG 0.411284 1_2:-56839409 Msa0079100:intron
AGACCGATTATTGAAGTAAC+TGG 0.412607 1_2:-56840660 Msa0079100:CDS
GTGACACCAGGAGAAGTAAT+AGG 0.412723 1_2:-56840913 Msa0079100:CDS
TTGACAGGCACTGCCAAATC+AGG 0.413487 1_2:-56834998 Msa0079100:intron
GATCTTCCTCCTGATTACTT+TGG 0.416024 1_2:-56836009 Msa0079100:CDS
GAATATGATAATACAATAAA+GGG 0.417163 1_2:+56832787 None:intergenic
TGGATCTGTTGTTATTGTTA+GGG 0.418325 1_2:-56840607 Msa0079100:CDS
CAACTTTGGTTCCAATAAGT+TGG 0.425712 1_2:-56837853 Msa0079100:CDS
AGCTATTGCCGAACCTGGTC+AGG 0.427068 1_2:+56840778 None:intergenic
TGTTCAATTTGACCGGATAG+TGG 0.430446 1_2:+56837815 None:intergenic
GGTTGGAATGAAGACAATAA+TGG 0.431835 1_2:-56836368 Msa0079100:CDS
TTATTTGGCTGCAGTCTTTG+AGG 0.433540 1_2:-56833282 Msa0079100:intron
GGAATGATTGGGTGTGATGT+TGG 0.436521 1_2:+56836281 None:intergenic
TTTCAGTCAATGGGACAGTA+TGG 0.443249 1_2:-56834859 Msa0079100:CDS
CTTTCTTTGTTCAATTTGAC+CGG 0.447139 1_2:+56837808 None:intergenic
TTATGTCTGCTTCGTTTGCT+CGG 0.449141 1_2:-56833154 Msa0079100:three_prime_UTR
CGAAGGAAGATTCTCTTGTT+CGG 0.450882 1_2:+56840962 None:intergenic
TATTTGGCTGCAGTCTTTGA+GGG 0.457087 1_2:-56833281 Msa0079100:intron
ACAGATCCAGGTTCAGGAAC+AGG 0.461967 1_2:+56840621 None:intergenic
GTTGGAGAAATGAGAGGATT+GGG 0.462020 1_2:+56832701 None:intergenic
GCCCCAATATTTGCTTTAGT+GGG 0.468160 1_2:+56833578 None:intergenic
TCTGTATTTAGGTGCAACTT+TGG 0.468788 1_2:-56837867 Msa0079100:intron
GGAAGGCGTTTGGTATCTGC+TGG 0.470525 1_2:-56834889 Msa0079100:CDS
TTAGGAAATCAGTTAGAAGT+TGG 0.473619 1_2:-56832658 Msa0079100:three_prime_UTR
TACTCTTATGTAAATCAGAA+TGG 0.473826 1_2:-56832603 None:intergenic
CTCTTCCGGCTTTAACGTCG+TGG 0.473990 1_2:+56840884 None:intergenic
ATAACAACAGATCCAGGTTC+AGG 0.475432 1_2:+56840615 None:intergenic
AGTTGGAGAAATGAGAGGAT+TGG 0.477195 1_2:+56832700 None:intergenic
GCAAAAGCAATGATTGAGGC+TGG 0.478086 1_2:-56833795 Msa0079100:CDS
ACTGCAGTTTGGAGCACTGC+AGG 0.479464 1_2:-56833612 Msa0079100:intron
GAATGATTGGGTGTGATGTT+GGG 0.480853 1_2:+56836282 None:intergenic
CAGTCTCCCATGCTCGAGAT+AGG 0.481427 1_2:+56835077 None:intergenic
TGGCAGGCAGCAAGACGTTA+GGG 0.487010 1_2:-56839408 Msa0079100:intron
TTGATGGAGGCTAATTTGAC+AGG 0.487664 1_2:-56835013 Msa0079100:CDS
GAAGGAAAACAATGAAGAGA+AGG 0.489542 1_2:+56836340 None:intergenic
CGGTCAAATTGAACAAAGAA+AGG 0.493526 1_2:-56837807 Msa0079100:CDS
TTTAACATTAGAATATTGGC+AGG 0.497436 1_2:+56832960 None:intergenic
ACGTCCAATCGAAGATCGTT+GGG 0.498777 1_2:+56835979 None:intergenic
TCACACCATACCTCCTGCTT+CGG 0.498985 1_2:-56840806 Msa0079100:CDS
GGTATTGAAATTGGTAGAAG+TGG 0.502446 1_2:+56836225 None:intergenic
TGCTTCGGATTCTCCTGACC+AGG 0.505236 1_2:-56840791 Msa0079100:intron
GAGATGCAGTGTCCACTATC+CGG 0.509834 1_2:-56837827 Msa0079100:CDS
ATTGGTAGAAGTGGTAGTAT+GGG 0.512771 1_2:+56836234 None:intergenic
CACGACGTTAAAGCCGGAAG+AGG 0.515817 1_2:-56840883 Msa0079100:CDS
GTTTCCCAACGATCTTCGAT+TGG 0.518123 1_2:-56835983 Msa0079100:CDS
AAGTTGTGGAAGGGAATGAT+TGG 0.519012 1_2:+56836269 None:intergenic
TACGTCCAATCGAAGATCGT+TGG 0.521998 1_2:+56835978 None:intergenic
GTGACTACTAAATTCTGAGT+TGG 0.523949 1_2:+56832683 None:intergenic
GAGCAGAATTTGGAGAGAGA+AGG 0.525876 1_2:+56836322 None:intergenic
TTGAAATAGGATTCTTACAT+GGG 0.526346 1_2:-56833462 Msa0079100:intron
TTTGAAATAGGATTCTTACA+TGG 0.528276 1_2:-56833463 Msa0079100:intron
TTGTCCGCACTTACTTCAGG+GGG 0.530222 1_2:-56833223 Msa0079100:CDS
TGCTAAACCTATCTCGAGCA+TGG 0.530356 1_2:-56835084 Msa0079100:CDS
TCTTCCGGCTTTAACGTCGT+GGG 0.531766 1_2:+56840885 None:intergenic
GGTGTGATGTTGGGAAAGAG+TGG 0.537129 1_2:+56836291 None:intergenic
AGCTTTCCCTTGGAAATGCA+CGG 0.537145 1_2:-56839204 Msa0079100:CDS
TTTGCTTCTTAGCACTTGGA+AGG 0.539187 1_2:-56834906 Msa0079100:intron
CAGCTTCAATCAATCATGGT+TGG 0.542616 1_2:-56836385 Msa0079100:CDS
AGAGCAAAACGCAGAGAGGT+AGG 0.542860 1_2:+56836187 None:intergenic
GTAACTGGTCATAAAGCTCA+TGG 0.544279 1_2:-56840645 Msa0079100:CDS
TTGTTCATCTATTACTGAAG+AGG 0.545963 1_2:+56833749 None:intergenic
AGAATCCGAAGCAGGAGGTA+TGG 0.545963 1_2:+56840801 None:intergenic
AGTAAGCCCGTGCATTTCCA+AGG 0.547750 1_2:+56839197 None:intergenic
GCTTTCCCTTGGAAATGCAC+GGG 0.547902 1_2:-56839203 Msa0079100:CDS
TGGTCAGGAGAATCCGAAGC+AGG 0.548751 1_2:+56840793 None:intergenic
TACACAGCTTCAATCAATCA+TGG 0.556289 1_2:-56836389 Msa0079100:CDS
GAGCGAGACATGGTGACACC+AGG 0.556383 1_2:-56840925 Msa0079100:CDS
GTCAAATTAGCCTCCATCAA+AGG 0.557161 1_2:+56835016 None:intergenic
TGGCCAAGGTGAGACACAAA+AGG 0.559663 1_2:-56834839 Msa0079100:intron
GTTTCGGCAGAAAGCACTGC+TGG 0.563837 1_2:-56839142 Msa0079100:intron
CTAACAATAACAACAGATCC+AGG 0.564430 1_2:+56840609 None:intergenic
CAATGCTTTGATGCTTGCTA+AGG 0.565665 1_2:-56833384 Msa0079100:intron
ATCTGAGTGAAGTTGTGGAA+GGG 0.565749 1_2:+56836260 None:intergenic
CTCTGCTTCCATTAACGCGA+AGG 0.567288 1_2:+56840945 None:intergenic
GGTGTGACGGAAACCAGTTA+AGG 0.568362 1_2:+56840822 None:intergenic
GTGTGATGTTGGGAAAGAGT+GGG 0.572497 1_2:+56836292 None:intergenic
TGACATTGTTAAAGCTCTTG+TGG 0.576157 1_2:-56839339 Msa0079100:intron
AAAGCGGGAGGATGATGTAT+CGG 0.576481 1_2:+56835054 None:intergenic
GGGGAATCTGAGTGAAGTTG+TGG 0.576776 1_2:+56836255 None:intergenic
TGAACAAAGAAAGGTTGCAA+AGG 0.579432 1_2:-56837798 Msa0079100:intron
AAAACCCACGACGTTAAAGC+CGG 0.582369 1_2:-56840889 Msa0079100:CDS
GCTAAACCTATCTCGAGCAT+GGG 0.582386 1_2:-56835083 Msa0079100:CDS
TTGGTAGAAGTGGTAGTATG+GGG 0.583586 1_2:+56836235 None:intergenic
TTCTGAGTTGGAGAAATGAG+AGG 0.583991 1_2:+56832695 None:intergenic
GCATACTGCAAAGAACTCTC+CGG 0.584824 1_2:+56833413 None:intergenic
AAGCAGGAGGTATGGTGTGA+CGG 0.586359 1_2:+56840809 None:intergenic
CAAAAGCAATGATTGAGGCT+GGG 0.589048 1_2:-56833794 Msa0079100:CDS
GATCGCAAAAGCAATGATTG+AGG 0.597372 1_2:-56833799 Msa0079100:CDS
GTTGTCCGCACTTACTTCAG+GGG 0.600790 1_2:-56833224 Msa0079100:CDS
AATCTGAGTGAAGTTGTGGA+AGG 0.603518 1_2:+56836259 None:intergenic
AGTTGTGGAAGGGAATGATT+GGG 0.605314 1_2:+56836270 None:intergenic
TCAATGGGACAGTATGGCCA+AGG 0.617198 1_2:-56834853 Msa0079100:CDS
ATTTGGCTGCAGTCTTTGAG+GGG 0.618279 1_2:-56833280 Msa0079100:intron
GGCGAAACTTCCTTTGATGG+AGG 0.619625 1_2:-56835026 Msa0079100:CDS
CTTACATGGGAGATAGCTCA+AGG 0.624331 1_2:-56833449 Msa0079100:CDS
GAAGCTGATATTATGTGTGT+TGG 0.627252 1_2:-56840558 Msa0079100:CDS
AACTTTCCAAAGTAATCAGG+AGG 0.628896 1_2:+56836003 None:intergenic
AGTAAGTGCGGACAACAAAG+TGG 0.637792 1_2:+56833231 None:intergenic
TGGTAGAAGTGGTAGTATGG+GGG 0.638798 1_2:+56836236 None:intergenic
TCAAGGAATTCAAAACACTC+CGG 0.647748 1_2:-56833432 Msa0079100:CDS
AATGGAAGCAGAGCGAGACA+TGG 0.663008 1_2:-56840935 Msa0079100:CDS
GTAAGCCCGTGCATTTCCAA+GGG 0.668609 1_2:+56839198 None:intergenic
TCAGGAGAATCCGAAGCAGG+AGG 0.670307 1_2:+56840796 None:intergenic
TGTTAGAGCAAAACGCAGAG+AGG 0.676698 1_2:+56836183 None:intergenic
TGTCCGCACTTACTTCAGGG+GGG 0.688499 1_2:-56833222 Msa0079100:CDS
ACCCACTAAAGCAAATATTG+GGG 0.690448 1_2:-56833579 Msa0079100:CDS
AGAGCTTTAACAATGTCACC+AGG 0.699121 1_2:+56839344 None:intergenic
TGATTTACATAAGAGTACAG+TGG 0.704183 1_2:+56832609 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ACTAACTTTTTTTTTTTTAA+TGG + chr1_2:56833344-56833363 None:intergenic 10.0%
!!! ATAAAAAATATTTTCACAAA+CGG + chr1_2:56835288-56835307 None:intergenic 10.0%
!!! ATAAAATGAAACTTTGATTT+TGG + chr1_2:56832626-56832645 None:intergenic 15.0%
!!! AGTATTCATTATTCTTATTT+TGG - chr1_2:56834184-56834203 Msa0079100:intron 15.0%
!!! TAAAAAATATTTTCACAAAC+GGG + chr1_2:56835287-56835306 None:intergenic 15.0%
!! AAGAAAATAGAAAATGTTAA+CGG - chr1_2:56835541-56835560 Msa0079100:intron 15.0%
!!! CGTGTTTTTTTAATTATTAA+GGG + chr1_2:56837094-56837113 None:intergenic 15.0%
!!! ACGTGTTTTTTTAATTATTA+AGG + chr1_2:56837095-56837114 None:intergenic 15.0%
!! AAGAAAAAAAAATGAAACAT+GGG + chr1_2:56837530-56837549 None:intergenic 15.0%
!! TTTCAAATTAAAAATGAAAG+TGG + chr1_2:56837956-56837975 None:intergenic 15.0%
!!! TTAACTTTTTTTTTTCAGTA+AGG - chr1_2:56840092-56840111 Msa0079100:intron 15.0%
!!! TAGTTTTAACATTAGAATAT+TGG + chr1_2:56840659-56840678 None:intergenic 15.0%
!!! ATTCAGTTTTAAATTTCTTA+TGG - chr1_2:56840697-56840716 Msa0079100:intron 15.0%
!! GAATATGATAATACAATAAA+GGG + chr1_2:56840828-56840847 None:intergenic 15.0%
!! AGAATATGATAATACAATAA+AGG + chr1_2:56840829-56840848 None:intergenic 15.0%
!!! AAAAGTATTGTTCTTTACAT+AGG + chr1_2:56833873-56833892 None:intergenic 20.0%
!!! ATTATCATTTGTTGTTTTAG+AGG - chr1_2:56833966-56833985 Msa0079100:intron 20.0%
!!! TTATCATTTGTTGTTTTAGA+GGG - chr1_2:56833967-56833986 Msa0079100:intron 20.0%
!! TAGCAATTACATTGAAAAAA+AGG - chr1_2:56833994-56834013 Msa0079100:intron 20.0%
!! AGCAATTACATTGAAAAAAA+GGG - chr1_2:56833995-56834014 Msa0079100:intron 20.0%
!!! TAATAATTATTCCTGTTTTC+TGG - chr1_2:56834148-56834167 Msa0079100:intron 20.0%
!!! AATATTTTAAACCAGAAAAC+AGG + chr1_2:56834162-56834181 None:intergenic 20.0%
!! TACAAAATATTGTCAAATAG+TGG - chr1_2:56834723-56834742 Msa0079100:intron 20.0%
!!! TGCTATTTTAATTATAGCTT+TGG - chr1_2:56834939-56834958 Msa0079100:intron 20.0%
!!! GAACTAATGAAACTTTTTTT+TGG - chr1_2:56835427-56835446 Msa0079100:intron 20.0%
!! AGAAAATAGAAAATGTTAAC+GGG - chr1_2:56835542-56835561 Msa0079100:intron 20.0%
!!! TTTTACATACAAAATAGCAT+GGG - chr1_2:56836023-56836042 Msa0079100:intron 20.0%
!!! TTTTTTTTTCCAACTTAGAA+TGG - chr1_2:56836143-56836162 Msa0079100:CDS 20.0%
!! TGAATTTCATGACAATTTAA+AGG - chr1_2:56836545-56836564 Msa0079100:intron 20.0%
!!! TGTTAAGGAACTTTTTATTT+AGG - chr1_2:56836921-56836940 Msa0079100:intron 20.0%
!! ATATGATGATAGTTAAACAA+AGG - chr1_2:56837015-56837034 Msa0079100:intron 20.0%
!!! AAGAAAAATGGTATTGAAAT+TGG + chr1_2:56837399-56837418 None:intergenic 20.0%
!! GAAGAAAAAAAAATGAAACA+TGG + chr1_2:56837531-56837550 None:intergenic 20.0%
!! TATTACATAAAAATGTTGAG+TGG + chr1_2:56837693-56837712 None:intergenic 20.0%
!!! AATTAGCTATTTGTTACTAT+TGG + chr1_2:56837721-56837740 None:intergenic 20.0%
!!! AATTTTAAGAAGCAAATCAA+TGG + chr1_2:56838398-56838417 None:intergenic 20.0%
!!! TTTCCAATTCTAAAATAGAA+TGG - chr1_2:56838443-56838462 Msa0079100:intron 20.0%
!!! TTCCAATTCTAAAATAGAAT+GGG - chr1_2:56838444-56838463 Msa0079100:intron 20.0%
!!! AAAACTCTTTGAAAATTATG+TGG - chr1_2:56838655-56838674 Msa0079100:intron 20.0%
!!! AAACTCTTTGAAAATTATGT+GGG - chr1_2:56838656-56838675 Msa0079100:intron 20.0%
!!! AGAAAATGATTGACATTTTT+GGG - chr1_2:56838855-56838874 Msa0079100:intron 20.0%
!! TTTAATCATTTAACTAGAGT+CGG - chr1_2:56838940-56838959 Msa0079100:intron 20.0%
!! TTTCTCGTCAATTAAATAAA+AGG + chr1_2:56839540-56839559 None:intergenic 20.0%
!! AAAAATCACCATTTCAAATA+TGG + chr1_2:56839759-56839778 None:intergenic 20.0%
!!! GATTTTTATCTAAGTAACAT+TGG - chr1_2:56839772-56839791 Msa0079100:intron 20.0%
!! CTGAAAAAAAAAAGTTAACA+TGG + chr1_2:56840090-56840109 None:intergenic 20.0%
!! GCCTTAAATGTATAATTATT+TGG - chr1_2:56840315-56840334 Msa0079100:intron 20.0%
!! GCCAAATAATTATACATTTA+AGG + chr1_2:56840319-56840338 None:intergenic 20.0%
!!! ACATTGCTTACTATTTTTTA+CGG - chr1_2:56840356-56840375 Msa0079100:intron 20.0%
!!! AGTTTTAAATTTCTTATGGA+TGG - chr1_2:56840701-56840720 Msa0079100:intron 20.0%
!!! AGTTATGTTTTCTTTGTAAA+GGG - chr1_2:56840744-56840763 Msa0079100:intron 20.0%
!!! TATTCCTAATTTTCCTAATT+AGG + chr1_2:56840859-56840878 None:intergenic 20.0%
!!! TGAAACTTTGATTTTGGTTT+GGG + chr1_2:56832620-56832639 None:intergenic 25.0%
!!! ATGAAACTTTGATTTTGGTT+TGG + chr1_2:56832621-56832640 None:intergenic 25.0%
! TTAATAATTTACTCCATGTC+CGG + chr1_2:56833295-56833314 None:intergenic 25.0%
!!! AAAAGTTAGTTGATAACTGA+CGG - chr1_2:56833354-56833373 Msa0079100:intron 25.0%
! GTTCGGTAAAATAAAATTAG+CGG - chr1_2:56833450-56833469 Msa0079100:CDS 25.0%
! TTCGGTAAAATAAAATTAGC+GGG - chr1_2:56833451-56833470 Msa0079100:CDS 25.0%
! TTAAATTCAAGTGACTTCAA+TGG - chr1_2:56833615-56833634 Msa0079100:intron 25.0%
!! ATTTTACGATTTACTATGCA+TGG - chr1_2:56833679-56833698 Msa0079100:intron 25.0%
! ATTGAAAAAAAGGGAAGAAA+AGG - chr1_2:56834004-56834023 Msa0079100:intron 25.0%
! TTGAAAAAAAGGGAAGAAAA+GGG - chr1_2:56834005-56834024 Msa0079100:intron 25.0%
! CACGTGAAATTTGTAATATA+AGG + chr1_2:56834110-56834129 None:intergenic 25.0%
!!! TTCATTATTCTTATTTTGGC+AGG - chr1_2:56834188-56834207 Msa0079100:intron 25.0%
! AACAAGCAGTAACAAAAAAT+GGG + chr1_2:56834564-56834583 None:intergenic 25.0%
! AAACAAGCAGTAACAAAAAA+TGG + chr1_2:56834565-56834584 None:intergenic 25.0%
! TTTGTTACTGCTTGTTTATA+TGG - chr1_2:56834568-56834587 Msa0079100:intron 25.0%
! ACTGATGTGCTAATTTAAAT+TGG - chr1_2:56834962-56834981 Msa0079100:intron 25.0%
! AATCATACATGTTTATAAGC+AGG + chr1_2:56835162-56835181 None:intergenic 25.0%
! TATGATTAATGAGATCAATG+AGG - chr1_2:56835175-56835194 Msa0079100:intron 25.0%
! ATGATTAATGAGATCAATGA+GGG - chr1_2:56835176-56835195 Msa0079100:intron 25.0%
!!! TGAACAATGTGTACATTTTT+TGG + chr1_2:56835467-56835486 None:intergenic 25.0%
! GAAAATAGAAAATGTTAACG+GGG - chr1_2:56835543-56835562 Msa0079100:intron 25.0%
!! CTTTTCCTACAAAGTATATA+TGG - chr1_2:56835689-56835708 Msa0079100:intron 25.0%
! TTTGACCATATATACTTTGT+AGG + chr1_2:56835697-56835716 None:intergenic 25.0%
!! GTTTTACATACAAAATAGCA+TGG - chr1_2:56836022-56836041 Msa0079100:intron 25.0%
! TTTACATACAAAATAGCATG+GGG - chr1_2:56836024-56836043 Msa0079100:intron 25.0%
! AAACTAATTCCATTCTAAGT+TGG + chr1_2:56836155-56836174 None:intergenic 25.0%
!! GCTTACGAGTATATAATTTT+TGG - chr1_2:56836286-56836305 Msa0079100:CDS 25.0%
! TTCATGACAATTTAAAGGTA+AGG - chr1_2:56836550-56836569 Msa0079100:intron 25.0%
!! TTCTAATGCAATGTTTCTAA+CGG - chr1_2:56836652-56836671 Msa0079100:intron 25.0%
!! AAGTGATTTTGTTCTACATT+TGG + chr1_2:56836770-56836789 None:intergenic 25.0%
! TAACTATCATCATATCAATC+AGG + chr1_2:56837010-56837029 None:intergenic 25.0%
! AAAAAACACGTTATCTAGAT+TGG - chr1_2:56837131-56837150 Msa0079100:intron 25.0%
! AAAAACACGTTATCTAGATT+GGG - chr1_2:56837132-56837151 Msa0079100:intron 25.0%
!! AATCTAAATTTTGCTTGCAT+CGG + chr1_2:56838086-56838105 None:intergenic 25.0%
! TTGTAACAGTTAATCTTAAG+TGG + chr1_2:56838109-56838128 None:intergenic 25.0%
! GTTACAACATACAATGATAA+TGG - chr1_2:56838122-56838141 Msa0079100:intron 25.0%
!! AACATATTGATTGCAAATGA+AGG + chr1_2:56838322-56838341 None:intergenic 25.0%
! ATGAATATACTTTCTTAGTG+CGG - chr1_2:56838485-56838504 Msa0079100:intron 25.0%
!! ATTTTCAAAGAGTTTTCTCA+TGG + chr1_2:56838651-56838670 None:intergenic 25.0%
! TTACACTACTTAATATGTGT+TGG - chr1_2:56838799-56838818 Msa0079100:intron 25.0%
!! GAGAAAATGATTGACATTTT+TGG - chr1_2:56838854-56838873 Msa0079100:intron 25.0%
!! GAAAATGATTGACATTTTTG+GGG - chr1_2:56838856-56838875 Msa0079100:intron 25.0%
!! ATTAGTTTCTAACTTACAAG+TGG + chr1_2:56839171-56839190 None:intergenic 25.0%
! GTTAGAAACTAATTCAAACT+AGG - chr1_2:56839178-56839197 Msa0079100:CDS 25.0%
!! GTGATTATACACAACTTTTA+CGG + chr1_2:56839355-56839374 None:intergenic 25.0%
! AATTAAATAAAAGGCTGGTA+TGG + chr1_2:56839531-56839550 None:intergenic 25.0%
!! GAGAAACATTTTACATTACT+GGG - chr1_2:56839554-56839573 Msa0079100:intron 25.0%
!!! AGAGTCTTATTTTTCTCTTT+GGG + chr1_2:56839889-56839908 None:intergenic 25.0%
!!! TTTTCGCTAAACTTTGAAAT+AGG - chr1_2:56840137-56840156 Msa0079100:intron 25.0%
!! TTTGAAATAGGATTCTTACA+TGG - chr1_2:56840149-56840168 Msa0079100:intron 25.0%
! TTGAAATAGGATTCTTACAT+GGG - chr1_2:56840150-56840169 Msa0079100:intron 25.0%
! TTTAACATTAGAATATTGGC+AGG + chr1_2:56840655-56840674 None:intergenic 25.0%
!! GAGTTATGTTTTCTTTGTAA+AGG - chr1_2:56840743-56840762 Msa0079100:intron 25.0%
!!! AAAGGGAGTTTTTATTTTTG+AGG - chr1_2:56840761-56840780 Msa0079100:intron 25.0%
!!! AGTTTTTATTTTTGAGGCAA+GGG - chr1_2:56840767-56840786 Msa0079100:intron 25.0%
! TATTCTATGTTTGCCTAATT+AGG - chr1_2:56840843-56840862 Msa0079100:CDS 25.0%
! TTTGCCTAATTAGGAAAATT+AGG - chr1_2:56840852-56840871 Msa0079100:CDS 25.0%
AGAAAATGAAACCCTAAGAA+TGG + chr1_2:56832868-56832887 None:intergenic 30.0%
TGACCAGTTACTTCAATAAT+CGG + chr1_2:56832958-56832977 None:intergenic 30.0%
! TGGATCTGTTGTTATTGTTA+GGG - chr1_2:56833005-56833024 Msa0079100:three_prime_UTR 30.0%
TCTGTTCGTGAAAAATTTAC+TGG - chr1_2:56833084-56833103 Msa0079100:three_prime_UTR 30.0%
AAAAATTTACTGGCGTCATT+AGG - chr1_2:56833094-56833113 Msa0079100:three_prime_UTR 30.0%
!! TTTTACCATTGTTATTGCTC+TGG - chr1_2:56833127-56833146 Msa0079100:three_prime_UTR 30.0%
! TTTTTCCAGAGCAATAACAA+TGG + chr1_2:56833135-56833154 None:intergenic 30.0%
TAATAATTTACTCCATGTCC+GGG + chr1_2:56833294-56833313 None:intergenic 30.0%
!!! GGGTAGTTTTAAGTTTATAG+CGG - chr1_2:56833412-56833431 Msa0079100:CDS 30.0%
TCGGTAAAATAAAATTAGCG+GGG - chr1_2:56833452-56833471 Msa0079100:CDS 30.0%
ATTATATAATAAGTCGCCAG+TGG - chr1_2:56833477-56833496 Msa0079100:intron 30.0%
ACAAAATTAAAAGCTACCAC+TGG + chr1_2:56833496-56833515 None:intergenic 30.0%
TTGGTAAAGTTCACTTAAAG+TGG - chr1_2:56833747-56833766 Msa0079100:CDS 30.0%
!!! CATAGGTTTTTTGCAAATTG+AGG + chr1_2:56833856-56833875 None:intergenic 30.0%
TCAGTTAAATCTTGTCTGTT+TGG - chr1_2:56834042-56834061 Msa0079100:intron 30.0%
ATTTCACGTGTTTCATCATT+TGG - chr1_2:56834120-56834139 Msa0079100:intron 30.0%
!!! TTTTTTTATCAGCTTTCCCT+TGG - chr1_2:56834398-56834417 Msa0079100:intron 30.0%
GAAGCAATGTTGTTAAATAG+CGG - chr1_2:56834631-56834650 Msa0079100:intron 30.0%
! AATATTTAGCGAATCGACTT+GGG + chr1_2:56834794-56834813 None:intergenic 30.0%
AAATATTTAGCGAATCGACT+TGG + chr1_2:56834795-56834814 None:intergenic 30.0%
ACAAAATGAAATGCTTAGCT+AGG - chr1_2:56835389-56835408 Msa0079100:intron 30.0%
! CTAAATACAGAAAGTACAAC+AGG + chr1_2:56835736-56835755 None:intergenic 30.0%
CTGTTGTACTTTCTGTATTT+AGG - chr1_2:56835734-56835753 Msa0079100:intron 30.0%
CTTTCTTTGTTCAATTTGAC+CGG + chr1_2:56835807-56835826 None:intergenic 30.0%
AATTTCTCACTCTAACAACA+AGG + chr1_2:56835929-56835948 None:intergenic 30.0%
TTACATACAAAATAGCATGG+GGG - chr1_2:56836025-56836044 Msa0079100:intron 30.0%
ATATTAGCGTGTGACATTAA+TGG + chr1_2:56836098-56836117 None:intergenic 30.0%
AGTTGAAATTGTATGCTTTG+TGG - chr1_2:56836417-56836436 Msa0079100:CDS 30.0%
! TATGCTTTGTGGTTTTCAAT+TGG - chr1_2:56836428-56836447 Msa0079100:intron 30.0%
!!! TGGTAGTTTTATCAAACTTG+AGG - chr1_2:56836465-56836484 Msa0079100:intron 30.0%
! TATTTCCTTTTCTAACTCGA+TGG - chr1_2:56836500-56836519 Msa0079100:intron 30.0%
TTTAAAGGTAAGGTGTGAAA+CGG - chr1_2:56836560-56836579 Msa0079100:intron 30.0%
! ATGTGGTCTTAAAAAATCTC+AGG + chr1_2:56836609-56836628 None:intergenic 30.0%
TTGCATTAGAAACATGAAGT+AGG + chr1_2:56836643-56836662 None:intergenic 30.0%
!! ACATTTGGAGCTTTTATTGA+TGG + chr1_2:56836755-56836774 None:intergenic 30.0%
ACACGTAACTTCAATGTATT+TGG + chr1_2:56836904-56836923 None:intergenic 30.0%
TACATTGAAGTTACGTGTTA+AGG - chr1_2:56836906-56836925 Msa0079100:intron 30.0%
!!! ATTTGTTGGAGAAGTGTTTT+GGG + chr1_2:56837488-56837507 None:intergenic 30.0%
!!! AATTTGTTGGAGAAGTGTTT+TGG + chr1_2:56837489-56837508 None:intergenic 30.0%
AATGAAACATGGGAAATGAA+TGG + chr1_2:56837520-56837539 None:intergenic 30.0%
! TGAAATTATTATCGGTGTCT+AGG - chr1_2:56837971-56837990 Msa0079100:intron 30.0%
GGTGTTAATGTCATATTCAT+TGG - chr1_2:56837992-56838011 Msa0079100:intron 30.0%
GAACTATCCAATTTCTGATA+TGG - chr1_2:56838168-56838187 Msa0079100:intron 30.0%
!! GTTAGTTAAGAGTGCTAATT+TGG + chr1_2:56838234-56838253 None:intergenic 30.0%
TGAAAATGAAACCACCTTAT+CGG + chr1_2:56838287-56838306 None:intergenic 30.0%
! AATTGAAGCATCTGTTTACA+TGG - chr1_2:56838354-56838373 Msa0079100:intron 30.0%
!!! CACCCATTCTATTTTAGAAT+TGG + chr1_2:56838449-56838468 None:intergenic 30.0%
AATGGGTGCATTTGTTTAAT+GGG - chr1_2:56838461-56838480 Msa0079100:intron 30.0%
GGATTTACATTTACCTGATT+TGG + chr1_2:56838630-56838649 None:intergenic 30.0%
!! ATTTTTCAACAAGTGCATAG+AGG - chr1_2:56838972-56838991 Msa0079100:intron 30.0%
GCTACTATTTAGAAAACTTG+TGG + chr1_2:56839027-56839046 None:intergenic 30.0%
! TACGATGTCATGTTGTTATT+AGG - chr1_2:56839307-56839326 Msa0079100:intron 30.0%
!!! TGTTTTTTTTGGGTGCATTT+TGG + chr1_2:56839489-56839508 None:intergenic 30.0%
AAAATGCACCCAAAAAAAAC+AGG - chr1_2:56839488-56839507 Msa0079100:intron 30.0%
AAATGCACCCAAAAAAAACA+GGG - chr1_2:56839489-56839508 Msa0079100:intron 30.0%
TCGTCAATTAAATAAAAGGC+TGG + chr1_2:56839536-56839555 None:intergenic 30.0%
! CGAGAAACATTTTACATTAC+TGG - chr1_2:56839553-56839572 Msa0079100:intron 30.0%
!!! TCAATTTTCTGGCTATTCAT+TGG - chr1_2:56839633-56839652 Msa0079100:intron 30.0%
TTATTGTGCACAAAGGTAAT+AGG + chr1_2:56839694-56839713 None:intergenic 30.0%
CAATGTTGCCATATTTGAAA+TGG - chr1_2:56839748-56839767 Msa0079100:intron 30.0%
TTGTTCATCTATTACTGAAG+AGG + chr1_2:56839866-56839885 None:intergenic 30.0%
!!! CAGAGTCTTATTTTTCTCTT+TGG + chr1_2:56839890-56839909 None:intergenic 30.0%
AGAGAAAAATAAGACTCTGA+AGG - chr1_2:56839891-56839910 Msa0079100:intron 30.0%
ACTAATCTGTATCTGTTTAG+CGG - chr1_2:56839920-56839939 Msa0079100:intron 30.0%
! AGCGAAAAACTAAGTTTTCT+AGG + chr1_2:56840125-56840144 None:intergenic 30.0%
TAGTTAACAAAAGCAAGTTG+AGG + chr1_2:56840283-56840302 None:intergenic 30.0%
! ACATTTAAGGCATCAGAAAT+CGG + chr1_2:56840306-56840325 None:intergenic 30.0%
ATGAGTTTGGTACTTCATTA+TGG + chr1_2:56840543-56840562 None:intergenic 30.0%
TACCAAACTCATGACATAAT+TGG - chr1_2:56840551-56840570 Msa0079100:CDS 30.0%
!!! GAGTTTTTATTTTTGAGGCA+AGG - chr1_2:56840766-56840785 Msa0079100:intron 30.0%
!!! GTTTTTATTTTTGAGGCAAG+GGG - chr1_2:56840768-56840787 Msa0079100:intron 30.0%
AGAATTTAGTAGTCACAGTT+AGG - chr1_2:56840936-56840955 Msa0079100:CDS 30.0%
TTAGGAAATCAGTTAGAAGT+TGG - chr1_2:56840954-56840973 Msa0079100:exon 30.0%
! TGATTTACATAAGAGTACAG+TGG + chr1_2:56841006-56841025 None:intergenic 30.0%
AAATGAAACCCTAAGAATGG+AGG + chr1_2:56832865-56832884 None:intergenic 35.0%
AGACCGATTATTGAAGTAAC+TGG - chr1_2:56832952-56832971 Msa0079100:three_prime_UTR 35.0%
CTAACAATAACAACAGATCC+AGG + chr1_2:56833006-56833025 None:intergenic 35.0%
! CTGGATCTGTTGTTATTGTT+AGG - chr1_2:56833004-56833023 Msa0079100:three_prime_UTR 35.0%
GAAGCTGATATTATGTGTGT+TGG - chr1_2:56833054-56833073 Msa0079100:three_prime_UTR 35.0%
AATTAGCTGGTAACTGACTA+GGG - chr1_2:56833209-56833228 Msa0079100:CDS 35.0%
! AGCTCAAATGGTTTGAGTTA+AGG - chr1_2:56833240-56833259 Msa0079100:CDS 35.0%
! GCTCAAATGGTTTGAGTTAA+GGG - chr1_2:56833241-56833260 Msa0079100:CDS 35.0%
CGATACATAGAAGATTAGCA+TGG - chr1_2:56833522-56833541 Msa0079100:intron 35.0%
TTAGAACATAACAGCGTAAC+AGG + chr1_2:56833660-56833679 None:intergenic 35.0%
TACCAATGCTAATCAAATGC+AGG + chr1_2:56833733-56833752 None:intergenic 35.0%
TAAAGTTCACTTAAAGTGGC+TGG - chr1_2:56833751-56833770 Msa0079100:CDS 35.0%
! CACCTTTGTTTGATGTAATG+CGG + chr1_2:56833813-56833832 None:intergenic 35.0%
TCCTGATACGTTAATCTCTA+TGG - chr1_2:56833896-56833915 Msa0079100:intron 35.0%
TCCATAGAGATTAACGTATC+AGG + chr1_2:56833900-56833919 None:intergenic 35.0%
GATAGTCATGCACAGTTATA+GGG + chr1_2:56834088-56834107 None:intergenic 35.0%
TGACATTGTTAAAGCTCTTG+TGG - chr1_2:56834273-56834292 Msa0079100:intron 35.0%
ACAACTGCAAAAAATGAGCT+TGG - chr1_2:56834443-56834462 Msa0079100:intron 35.0%
!! AAATGAGCTTGGTGTTGTTT+CGG - chr1_2:56834454-56834473 Msa0079100:intron 35.0%
CAGTAACAAAAAATGGGAAC+TGG + chr1_2:56834558-56834577 None:intergenic 35.0%
!! ATATTTAGCGAATCGACTTG+GGG + chr1_2:56834793-56834812 None:intergenic 35.0%
TAACTAGAGAGAGATAAGCT+TGG - chr1_2:56835014-56835033 Msa0079100:CDS 35.0%
ATTAGAGTTATGCGTGTTCA+AGG - chr1_2:56835105-56835124 Msa0079100:CDS 35.0%
TTAGAGTTATGCGTGTTCAA+GGG - chr1_2:56835106-56835125 Msa0079100:CDS 35.0%
GAAGTGTAACACTTGTACTT+TGG - chr1_2:56835221-56835240 Msa0079100:intron 35.0%
TAACACTTGTACTTTGGTCT+AGG - chr1_2:56835227-56835246 Msa0079100:intron 35.0%
AACACTTGTACTTTGGTCTA+GGG - chr1_2:56835228-56835247 Msa0079100:intron 35.0%
! AATTTTAGGCCCTGGATTTT+AGG - chr1_2:56835261-56835280 Msa0079100:intron 35.0%
! TCATTTTGTCTCCATCATGA+TGG + chr1_2:56835378-56835397 None:intergenic 35.0%
!!! TTTTCGTACATTGGCTTATC+TGG - chr1_2:56835593-56835612 Msa0079100:intron 35.0%
TCTGTATTTAGGTGCAACTT+TGG - chr1_2:56835745-56835764 Msa0079100:intron 35.0%
! CAACTTTGGTTCCAATAAGT+TGG - chr1_2:56835759-56835778 Msa0079100:intron 35.0%
CGGTCAAATTGAACAAAGAA+AGG - chr1_2:56835805-56835824 Msa0079100:intron 35.0%
TGAACAAAGAAAGGTTGCAA+AGG - chr1_2:56835814-56835833 Msa0079100:intron 35.0%
AACATGACTAAAGATCAAGC+TGG - chr1_2:56835849-56835868 Msa0079100:intron 35.0%
AATGGGATACATGTGGTAAT+TGG - chr1_2:56836241-56836260 Msa0079100:CDS 35.0%
ATGGGATACATGTGGTAATT+GGG - chr1_2:56836242-56836261 Msa0079100:CDS 35.0%
TCAGTCTAAGCTTATTGCAT+AGG - chr1_2:56836372-56836391 Msa0079100:CDS 35.0%
!! AGTAGGTTCTAAATGCAATG+TGG + chr1_2:56836626-56836645 None:intergenic 35.0%
TCTGTAGTTTCCTTCATGTT+TGG - chr1_2:56836680-56836699 Msa0079100:intron 35.0%
ATGTTTGGCTATGTTGAGAT+TGG - chr1_2:56836695-56836714 Msa0079100:intron 35.0%
!! GAGCTTTTATTGATGGCATT+GGG + chr1_2:56836748-56836767 None:intergenic 35.0%
! ATTTTCTGTCTGAGTTTCAG+TGG - chr1_2:56837177-56837196 Msa0079100:intron 35.0%
TACACAGCTTCAATCAATCA+TGG - chr1_2:56837223-56837242 Msa0079100:intron 35.0%
GGTTGGAATGAAGACAATAA+TGG - chr1_2:56837244-56837263 Msa0079100:intron 35.0%
GAAGGAAAACAATGAAGAGA+AGG + chr1_2:56837275-56837294 None:intergenic 35.0%
ATTGGTAGAAGTGGTAGTAT+GGG + chr1_2:56837381-56837400 None:intergenic 35.0%
AATTGGTAGAAGTGGTAGTA+TGG + chr1_2:56837382-56837401 None:intergenic 35.0%
! GGTATTGAAATTGGTAGAAG+TGG + chr1_2:56837390-56837409 None:intergenic 35.0%
GGTAGGTTTGTGAAGAAAAA+TGG + chr1_2:56837411-56837430 None:intergenic 35.0%
TTCTGTAGAATTAGGCGAAT+TGG + chr1_2:56837459-56837478 None:intergenic 35.0%
!!! TTTGTTGGAGAAGTGTTTTG+GGG + chr1_2:56837487-56837506 None:intergenic 35.0%
AATGGCTTACAGCAATTTGT+TGG + chr1_2:56837502-56837521 None:intergenic 35.0%
AACTTTCCAAAGTAATCAGG+AGG + chr1_2:56837612-56837631 None:intergenic 35.0%
GGAAACTTTCCAAAGTAATC+AGG + chr1_2:56837615-56837634 None:intergenic 35.0%
AATATAAACCACGTGTATCG+TGG + chr1_2:56837930-56837949 None:intergenic 35.0%
! GATAGTTCTACAGGAAATCA+AGG + chr1_2:56838156-56838175 None:intergenic 35.0%
! CAGAAATTGGATAGTTCTAC+AGG + chr1_2:56838165-56838184 None:intergenic 35.0%
! TTAGTTGTTATGCACCGATA+AGG - chr1_2:56838270-56838289 Msa0079100:intron 35.0%
GAATGGGTGCATTTGTTTAA+TGG - chr1_2:56838460-56838479 Msa0079100:intron 35.0%
! TACTTTTGCTTCTTAGCACT+TGG - chr1_2:56838702-56838721 Msa0079100:intron 35.0%
TGGAAAAAGGTTTCAGTCAA+TGG - chr1_2:56838743-56838762 Msa0079100:intron 35.0%
GGAAAAAGGTTTCAGTCAAT+GGG - chr1_2:56838744-56838763 Msa0079100:intron 35.0%
CACTACTTAATATGTGTTGG+TGG - chr1_2:56838802-56838821 Msa0079100:intron 35.0%
! TCCTAATCTTGTTTGCTACA+GGG - chr1_2:56839201-56839220 Msa0079100:CDS 35.0%
! GTTGTTATTAGGTTCAAACG+CGG - chr1_2:56839318-56839337 Msa0079100:intron 35.0%
GAAATCGATACGCTTCAATT+AGG + chr1_2:56839447-56839466 None:intergenic 35.0%
CATGTTATGTTTGGCATTCA+TGG + chr1_2:56839580-56839599 None:intergenic 35.0%
! ACACAGAGCAATCAATTTTC+TGG - chr1_2:56839622-56839641 Msa0079100:intron 35.0%
!! CCATGTTTTATTGTGCACAA+AGG + chr1_2:56839701-56839720 None:intergenic 35.0%
CCTTTGTGCACAATAAAACA+TGG - chr1_2:56839698-56839717 Msa0079100:intron 35.0%
ATCTAAGTAACATTGGCATC+TGG - chr1_2:56839779-56839798 Msa0079100:intron 35.0%
ATTCAGCAAAATCAGTAACC+TGG - chr1_2:56839971-56839990 Msa0079100:intron 35.0%
ACACCCACTAAAGCAAATAT+TGG - chr1_2:56840031-56840050 Msa0079100:intron 35.0%
CACCCACTAAAGCAAATATT+GGG - chr1_2:56840032-56840051 Msa0079100:intron 35.0%
ACCCACTAAAGCAAATATTG+GGG - chr1_2:56840033-56840052 Msa0079100:intron 35.0%
CCCAAAAACAAATGCAATTG+CGG + chr1_2:56840059-56840078 None:intergenic 35.0%
!! CCGCAATTGCATTTGTTTTT+GGG - chr1_2:56840056-56840075 Msa0079100:intron 35.0%
TCAAGGAATTCAAAACACTC+CGG - chr1_2:56840180-56840199 Msa0079100:intron 35.0%
TGCCAATTATGTCATGAGTT+TGG + chr1_2:56840556-56840575 None:intergenic 35.0%
TGAAAGAAACTCGACAAATC+TGG + chr1_2:56840627-56840646 None:intergenic 35.0%
! GGAGTTGGGTTGTTTATTAT+CGG - chr1_2:56840789-56840808 Msa0079100:intron 35.0%
GTGACTACTAAATTCTGAGT+TGG + chr1_2:56840932-56840951 None:intergenic 35.0%
CGAAGGAAGATTCTCTTGTT+CGG + chr1_2:56832653-56832672 None:intergenic 40.0%
AGAATCTTCCTTCGCGTTAA+TGG - chr1_2:56832659-56832678 Msa0079100:three_prime_UTR 40.0%
! GTTTTGCCTATTACTTCTCC+TGG + chr1_2:56832708-56832727 None:intergenic 40.0%
GTAACTGGTCATAAAGCTCA+TGG - chr1_2:56832967-56832986 Msa0079100:three_prime_UTR 40.0%
ATAACAACAGATCCAGGTTC+AGG + chr1_2:56833000-56833019 None:intergenic 40.0%
! CTGATAGCGAATGAATTAGC+TGG - chr1_2:56833196-56833215 Msa0079100:CDS 40.0%
GAATTAGCTGGTAACTGACT+AGG - chr1_2:56833208-56833227 Msa0079100:CDS 40.0%
ATTAGCTGGTAACTGACTAG+GGG - chr1_2:56833210-56833229 Msa0079100:CDS 40.0%
TGAGTTAAGGGAAAACGAGT+TGG - chr1_2:56833253-56833272 Msa0079100:CDS 40.0%
GGATAAGTTAGCTGAGTGTT+CGG - chr1_2:56833433-56833452 Msa0079100:CDS 40.0%
ATTCTAGACAATGCTGTCTC+TGG - chr1_2:56833580-56833599 Msa0079100:CDS 40.0%
ATCAAATGCAGGCTAATGGT+GGG + chr1_2:56833722-56833741 None:intergenic 40.0%
AATCAAATGCAGGCTAATGG+TGG + chr1_2:56833723-56833742 None:intergenic 40.0%
GCTAATCAAATGCAGGCTAA+TGG + chr1_2:56833726-56833745 None:intergenic 40.0%
AGCCTGCATTTGATTAGCAT+TGG - chr1_2:56833728-56833747 Msa0079100:CDS 40.0%
ACTTAAAGTGGCTGGCAAAT+TGG - chr1_2:56833759-56833778 Msa0079100:CDS 40.0%
TTTGATGTAATGCGGAGACA+AGG + chr1_2:56833805-56833824 None:intergenic 40.0%
CTCCGCATTACATCAAACAA+AGG - chr1_2:56833808-56833827 Msa0079100:intron 40.0%
GGATAGTCATGCACAGTTAT+AGG + chr1_2:56834089-56834108 None:intergenic 40.0%
! AGAGCTTTAACAATGTCACC+AGG + chr1_2:56834271-56834290 None:intergenic 40.0%
!! CAATTGACTTGAGGGCAATT+GGG + chr1_2:56834340-56834359 None:intergenic 40.0%
!! GTAGCAACCAATTGACTTGA+GGG + chr1_2:56834348-56834367 None:intergenic 40.0%
!! AGTAGCAACCAATTGACTTG+AGG + chr1_2:56834349-56834368 None:intergenic 40.0%
! AGTCAATTGGTTGCTACTTG+AGG - chr1_2:56834351-56834370 Msa0079100:intron 40.0%
TCTGCATTCTCTTGTCTAGT+TGG - chr1_2:56834594-56834613 Msa0079100:intron 40.0%
! TCTCTTGTCTAGTTGGTACT+TGG - chr1_2:56834601-56834620 Msa0079100:intron 40.0%
! GCTATAGTGCTATTGCATAG+CGG - chr1_2:56834653-56834672 Msa0079100:intron 40.0%
!! TATTTAGCGAATCGACTTGG+GGG + chr1_2:56834792-56834811 None:intergenic 40.0%
TAGCACAACAACACTCATTG+AGG - chr1_2:56834873-56834892 Msa0079100:CDS 40.0%
AGCACAACAACACTCATTGA+GGG - chr1_2:56834874-56834893 Msa0079100:CDS 40.0%
ACAACACTCATTGAGGGAAT+AGG - chr1_2:56834880-56834899 Msa0079100:CDS 40.0%
TAATGAGATCAATGAGGGAG+TGG - chr1_2:56835181-56835200 Msa0079100:intron 40.0%
!! AGGGACCTGGTTTGAATTTT+AGG - chr1_2:56835247-56835266 Msa0079100:intron 40.0%
CTTGAAGTGAACCATCATGA+TGG - chr1_2:56835364-56835383 Msa0079100:intron 40.0%
AGCTAGGAATGATGCATTTC+TGG - chr1_2:56835405-56835424 Msa0079100:intron 40.0%
! ACAGAAAGTACAACAGGTTG+AGG + chr1_2:56835730-56835749 None:intergenic 40.0%
TGCATCTCAGTCCAACTTAT+TGG + chr1_2:56835773-56835792 None:intergenic 40.0%
TGTTCAATTTGACCGGATAG+TGG + chr1_2:56835800-56835819 None:intergenic 40.0%
TTGTAGCCATACAAGAACAC+AGG - chr1_2:56835963-56835982 Msa0079100:intron 40.0%
TTGATTTCAGTCATGTGAGC+AGG - chr1_2:56836054-56836073 Msa0079100:intron 40.0%
TTCCCAAAATGCTGTGCAAA+TGG - chr1_2:56836223-56836242 Msa0079100:CDS 40.0%
TCCCAAAATGCTGTGCAAAT+GGG - chr1_2:56836224-56836243 Msa0079100:CDS 40.0%
! TCCCATTTGCACAGCATTTT+GGG + chr1_2:56836228-56836247 None:intergenic 40.0%
! ATCCCATTTGCACAGCATTT+TGG + chr1_2:56836229-56836248 None:intergenic 40.0%
AGCTTAGACTGAACTAGCAA+CGG + chr1_2:56836364-56836383 None:intergenic 40.0%
GTCTAAGCTTATTGCATAGG+TGG - chr1_2:56836375-56836394 Msa0079100:CDS 40.0%
!! AATTGGAGACTGATTTGCAG+TGG - chr1_2:56836445-56836464 Msa0079100:intron 40.0%
ATCATTGTCCCCATCATTCT+CGG + chr1_2:56836526-56836545 None:intergenic 40.0%
CTCAACATAGCCAAACATGA+AGG + chr1_2:56836693-56836712 None:intergenic 40.0%
! TTATTGATGGCATTGGGCTA+AGG + chr1_2:56836742-56836761 None:intergenic 40.0%
!! GGAGCTTTTATTGATGGCAT+TGG + chr1_2:56836749-56836768 None:intergenic 40.0%
CAGCTTCAATCAATCATGGT+TGG - chr1_2:56837227-56837246 Msa0079100:intron 40.0%
GGGTGTTAAAGAGCAGAATT+TGG + chr1_2:56837303-56837322 None:intergenic 40.0%
GAATGATTGGGTGTGATGTT+GGG + chr1_2:56837333-56837352 None:intergenic 40.0%
AGTTGTGGAAGGGAATGATT+GGG + chr1_2:56837345-56837364 None:intergenic 40.0%
AAGTTGTGGAAGGGAATGAT+TGG + chr1_2:56837346-56837365 None:intergenic 40.0%
ATCTGAGTGAAGTTGTGGAA+GGG + chr1_2:56837355-56837374 None:intergenic 40.0%
AATCTGAGTGAAGTTGTGGA+AGG + chr1_2:56837356-56837375 None:intergenic 40.0%
TTGGTAGAAGTGGTAGTATG+GGG + chr1_2:56837380-56837399 None:intergenic 40.0%
TCCCAATTCACGAGTTTATG+TGG - chr1_2:56837556-56837575 Msa0079100:intron 40.0%
CCCACATAAACTCGTGAATT+GGG + chr1_2:56837560-56837579 None:intergenic 40.0%
CCCAATTCACGAGTTTATGT+GGG - chr1_2:56837557-56837576 Msa0079100:intron 40.0%
ACCCACATAAACTCGTGAAT+TGG + chr1_2:56837561-56837580 None:intergenic 40.0%
! TATGTGGGTTTTTACGTTGC+AGG - chr1_2:56837572-56837591 Msa0079100:intron 40.0%
TGGTAAGTTACAATGTGCAC+AGG + chr1_2:56837673-56837692 None:intergenic 40.0%
! GCACTGATACTACATGTTGA+AGG - chr1_2:56837859-56837878 Msa0079100:CDS 40.0%
GTTCTACAGGAAATCAAGGA+AGG + chr1_2:56838152-56838171 None:intergenic 40.0%
CTGCTTGCCATATCAGAAAT+TGG + chr1_2:56838178-56838197 None:intergenic 40.0%
TCTTAGTGCGGTAAAGAGTT+AGG - chr1_2:56838497-56838516 Msa0079100:intron 40.0%
AAGTTTCGCCACTAAAAAGC+GGG + chr1_2:56838576-56838595 None:intergenic 40.0%
GAAGTTTCGCCACTAAAAAG+CGG + chr1_2:56838577-56838596 None:intergenic 40.0%
! GTCAAATTAGCCTCCATCAA+AGG + chr1_2:56838599-56838618 None:intergenic 40.0%
TTGATGGAGGCTAATTTGAC+AGG - chr1_2:56838599-56838618 Msa0079100:intron 40.0%
TTTGCTTCTTAGCACTTGGA+AGG - chr1_2:56838706-56838725 Msa0079100:intron 40.0%
GTTTGGTATCTGCTGGAAAA+AGG - chr1_2:56838730-56838749 Msa0079100:intron 40.0%
TTTCAGTCAATGGGACAGTA+TGG - chr1_2:56838753-56838772 Msa0079100:intron 40.0%
! ATACCTTTTGTGTCTCACCT+TGG + chr1_2:56838779-56838798 None:intergenic 40.0%
CTGATATCCGAATAGAGTGA+AGG - chr1_2:56838889-56838908 Msa0079100:intron 40.0%
ATATCCGAATAGAGTGAAGG+TGG - chr1_2:56838892-56838911 Msa0079100:intron 40.0%
GAATCCACCTTCACTCTATT+CGG + chr1_2:56838899-56838918 None:intergenic 40.0%
CAACAAGTGCATAGAGGAAA+AGG - chr1_2:56838978-56838997 Msa0079100:intron 40.0%
! GTCCTAATCTTGTTTGCTAC+AGG - chr1_2:56839200-56839219 Msa0079100:CDS 40.0%
ACCCTGTAGCAAACAAGATT+AGG + chr1_2:56839205-56839224 None:intergenic 40.0%
TGCTAAACTCTTACCGTAGA+GGG + chr1_2:56839234-56839253 None:intergenic 40.0%
ATGCTAAACTCTTACCGTAG+AGG + chr1_2:56839235-56839254 None:intergenic 40.0%
!! AGCGTATCGATTTCAGACTA+TGG - chr1_2:56839453-56839472 Msa0079100:intron 40.0%
CGATTTCAGACTATGGTTAG+TGG - chr1_2:56839460-56839479 Msa0079100:intron 40.0%
! CTGCAGAAGCATGTTATGTT+TGG + chr1_2:56839589-56839608 None:intergenic 40.0%
GATCGCAAAAGCAATGATTG+AGG - chr1_2:56839813-56839832 Msa0079100:intron 40.0%
CAAAAGCAATGATTGAGGCT+GGG - chr1_2:56839818-56839837 Msa0079100:intron 40.0%
GCCCCAATATTTGCTTTAGT+GGG + chr1_2:56840037-56840056 None:intergenic 40.0%
!! GCCGCAATTGCATTTGTTTT+TGG - chr1_2:56840055-56840074 Msa0079100:intron 40.0%
! CAATGCTTTGATGCTTGCTA+AGG - chr1_2:56840228-56840247 Msa0079100:intron 40.0%
TTATTTGGCTGCAGTCTTTG+AGG - chr1_2:56840330-56840349 Msa0079100:intron 40.0%
TATTTGGCTGCAGTCTTTGA+GGG - chr1_2:56840331-56840350 Msa0079100:intron 40.0%
TTATGTCTGCTTCGTTTGCT+CGG - chr1_2:56840458-56840477 Msa0079100:intron 40.0%
! TGCTCGGTTTTGCTTGTAAA+TGG - chr1_2:56840474-56840493 Msa0079100:intron 40.0%
! TCGGTTTTGCTTGTAAATGG+TGG - chr1_2:56840477-56840496 Msa0079100:intron 40.0%
GTTGGAGAAATGAGAGGATT+GGG + chr1_2:56840914-56840933 None:intergenic 40.0%
AGTTGGAGAAATGAGAGGAT+TGG + chr1_2:56840915-56840934 None:intergenic 40.0%
! TTCTGAGTTGGAGAAATGAG+AGG + chr1_2:56840920-56840939 None:intergenic 40.0%
GTGACACCAGGAGAAGTAAT+AGG - chr1_2:56832699-56832718 Msa0079100:three_prime_UTR 45.0%
AAAACCCACGACGTTAAAGC+CGG - chr1_2:56832723-56832742 Msa0079100:three_prime_UTR 45.0%
TGCTGTGTATGTTCCTCTTC+CGG + chr1_2:56832745-56832764 None:intergenic 45.0%
ACAGTCTACGCTTCCTTAAC+TGG - chr1_2:56832777-56832796 Msa0079100:three_prime_UTR 45.0%
!! TGCTCTGGAAAAAGTAGCTG+AGG - chr1_2:56833142-56833161 Msa0079100:three_prime_UTR 45.0%
TTAGCTGGTAACTGACTAGG+GGG - chr1_2:56833211-56833230 Msa0079100:CDS 45.0%
TAAAGTGGCTGGCAAATTGG+TGG - chr1_2:56833762-56833781 Msa0079100:CDS 45.0%
AAAGGGAAGAAAAGGGTCGT+AGG - chr1_2:56834012-56834031 Msa0079100:intron 45.0%
! ATGCACTTGTCTTTTCGTCC+TGG - chr1_2:56834250-56834269 Msa0079100:intron 45.0%
!! CCAATTGACTTGAGGGCAAT+TGG + chr1_2:56834341-56834360 None:intergenic 45.0%
CCAATTGCCCTCAAGTCAAT+TGG - chr1_2:56834338-56834357 Msa0079100:intron 45.0%
AGCTTTCCCTTGGAAATGCA+CGG - chr1_2:56834408-56834427 Msa0079100:intron 45.0%
! CTAGTTGGTACTTGGTTGTG+AGG - chr1_2:56834609-56834628 Msa0079100:intron 45.0%
CGCAATACGCTATTTAGTGC+TGG - chr1_2:56834700-56834719 Msa0079100:intron 45.0%
!! ATTTAGCGAATCGACTTGGG+GGG + chr1_2:56834791-56834810 None:intergenic 45.0%
CACTCATTGAGGGAATAGGT+TGG - chr1_2:56834884-56834903 Msa0079100:CDS 45.0%
!! AGGGAATAGGTTGGTGAGAT+TGG - chr1_2:56834893-56834912 Msa0079100:CDS 45.0%
!! GGGAATAGGTTGGTGAGATT+GGG - chr1_2:56834894-56834913 Msa0079100:CDS 45.0%
!! GGAATAGGTTGGTGAGATTG+GGG - chr1_2:56834895-56834914 Msa0079100:CDS 45.0%
CAGGGCCTAAAATTCAAACC+AGG + chr1_2:56835255-56835274 None:intergenic 45.0%
!! CTGGTTTGAATTTTAGGCCC+TGG - chr1_2:56835253-56835272 Msa0079100:intron 45.0%
ACAAACGGGCCTAAAATCCA+GGG + chr1_2:56835273-56835292 None:intergenic 45.0%
! TTAGCATGCACTGACAGGTA+GGG - chr1_2:56835568-56835587 Msa0079100:intron 45.0%
! GGTAGGGGATTTTCGTACAT+TGG - chr1_2:56835584-56835603 Msa0079100:intron 45.0%
CTGGAATCTGTTATCCCCTT+GGG - chr1_2:56835868-56835887 Msa0079100:intron 45.0%
TGCAAGCCTGTGTTCTTGTA+TGG + chr1_2:56835972-56835991 None:intergenic 45.0%
CTGTGCAAATGGGATACATG+TGG - chr1_2:56836234-56836253 Msa0079100:CDS 45.0%
GCTTAGACTGAACTAGCAAC+GGG + chr1_2:56836363-56836382 None:intergenic 45.0%
GAGCAGAATTTGGAGAGAGA+AGG + chr1_2:56837293-56837312 None:intergenic 45.0%
GTGTGATGTTGGGAAAGAGT+GGG + chr1_2:56837323-56837342 None:intergenic 45.0%
GGAATGATTGGGTGTGATGT+TGG + chr1_2:56837334-56837353 None:intergenic 45.0%
TGGTAGAAGTGGTAGTATGG+GGG + chr1_2:56837379-56837398 None:intergenic 45.0%
TGTTAGAGCAAAACGCAGAG+AGG + chr1_2:56837432-56837451 None:intergenic 45.0%
GGGTCAGGTTCTGTAGAATT+AGG + chr1_2:56837467-56837486 None:intergenic 45.0%
GTTTCCCAACGATCTTCGAT+TGG - chr1_2:56837629-56837648 Msa0079100:intron 45.0%
ACGTCCAATCGAAGATCGTT+GGG + chr1_2:56837636-56837655 None:intergenic 45.0%
TACGTCCAATCGAAGATCGT+TGG + chr1_2:56837637-56837656 None:intergenic 45.0%
CCAAGACAGGTCCATTTGAA+AGG + chr1_2:56837808-56837827 None:intergenic 45.0%
CCTTTCAAATGGACCTGTCT+TGG - chr1_2:56837805-56837824 Msa0079100:CDS 45.0%
AAATGGACCTGTCTTGGATG+AGG - chr1_2:56837811-56837830 Msa0079100:CDS 45.0%
! CTACATGTTGAAGGTGTGTC+CGG - chr1_2:56837868-56837887 Msa0079100:intron 45.0%
! GTTGTTATGCACCGATAAGG+TGG - chr1_2:56838273-56838292 Msa0079100:intron 45.0%
TGCTAAACCTATCTCGAGCA+TGG - chr1_2:56838528-56838547 Msa0079100:intron 45.0%
GCTAAACCTATCTCGAGCAT+GGG - chr1_2:56838529-56838548 Msa0079100:intron 45.0%
AAAGCGGGAGGATGATGTAT+CGG + chr1_2:56838561-56838580 None:intergenic 45.0%
!!! ATCATCCTCCCGCTTTTTAG+TGG - chr1_2:56838565-56838584 Msa0079100:intron 45.0%
AGTGGCGAAACTTCCTTTGA+TGG - chr1_2:56838583-56838602 Msa0079100:intron 45.0%
! GTGGTTCTCTAGCTTCTTTG+AGG - chr1_2:56838821-56838840 Msa0079100:intron 45.0%
ACAGGGTCATTTACCCTCTA+CGG - chr1_2:56839218-56839237 Msa0079100:intron 45.0%
!!! CTGCGAGCCCTGTTTTTTTT+GGG + chr1_2:56839499-56839518 None:intergenic 45.0%
!!! ACTGCGAGCCCTGTTTTTTT+TGG + chr1_2:56839500-56839519 None:intergenic 45.0%
GCAAAAGCAATGATTGAGGC+TGG - chr1_2:56839817-56839836 Msa0079100:intron 45.0%
GGCCCCAATATTTGCTTTAG+TGG + chr1_2:56840038-56840057 None:intergenic 45.0%
CTTACATGGGAGATAGCTCA+AGG - chr1_2:56840163-56840182 Msa0079100:intron 45.0%
GCATACTGCAAAGAACTCTC+CGG + chr1_2:56840202-56840221 None:intergenic 45.0%
ATTTGGCTGCAGTCTTTGAG+GGG - chr1_2:56840332-56840351 Msa0079100:intron 45.0%
AGTAAGTGCGGACAACAAAG+TGG + chr1_2:56840384-56840403 None:intergenic 45.0%
TTGTTGTCCGCACTTACTTC+AGG - chr1_2:56840386-56840405 Msa0079100:intron 45.0%
TGTTGTCCGCACTTACTTCA+GGG - chr1_2:56840387-56840406 Msa0079100:intron 45.0%
!!! ATTTTTGAGGCAAGGGGAGT+TGG - chr1_2:56840774-56840793 Msa0079100:intron 45.0%
!!! TTTTTGAGGCAAGGGGAGTT+GGG - chr1_2:56840775-56840794 Msa0079100:intron 45.0%
!! AAAAAATATATTATATACAA+GGG + chr1_2:56834526-56834545 None:intergenic 5.0%
!! TAAAAAATATATTATATACA+AGG + chr1_2:56834527-56834546 None:intergenic 5.0%
!!! TTTTAATTTGAAATTATTAT+CGG - chr1_2:56837963-56837982 Msa0079100:intron 5.0%
CTCTGCTTCCATTAACGCGA+AGG + chr1_2:56832670-56832689 None:intergenic 50.0%
AATGGAAGCAGAGCGAGACA+TGG - chr1_2:56832677-56832696 Msa0079100:three_prime_UTR 50.0%
! TCTTCCGGCTTTAACGTCGT+GGG + chr1_2:56832730-56832749 None:intergenic 50.0%
! GGTGTGACGGAAACCAGTTA+AGG + chr1_2:56832793-56832812 None:intergenic 50.0%
! AAGCAGGAGGTATGGTGTGA+CGG + chr1_2:56832806-56832825 None:intergenic 50.0%
TCACACCATACCTCCTGCTT+CGG - chr1_2:56832806-56832825 Msa0079100:three_prime_UTR 50.0%
AGAATCCGAAGCAGGAGGTA+TGG + chr1_2:56832814-56832833 None:intergenic 50.0%
ACCAGGTTCGGCAATAGCTT+CGG - chr1_2:56832838-56832857 Msa0079100:three_prime_UTR 50.0%
AGCTTCGGACCTCCATTCTT+AGG - chr1_2:56832853-56832872 Msa0079100:three_prime_UTR 50.0%
GCTTCGGACCTCCATTCTTA+GGG - chr1_2:56832854-56832873 Msa0079100:three_prime_UTR 50.0%
ACAGATCCAGGTTCAGGAAC+AGG + chr1_2:56832994-56833013 None:intergenic 50.0%
TGGTAACTGACTAGGGGGTT+GGG - chr1_2:56833216-56833235 Msa0079100:CDS 50.0%
! GGAAAACGAGTTGGAGATCC+TGG - chr1_2:56833262-56833281 Msa0079100:CDS 50.0%
TGGAGATCCTGGTTCAAACC+CGG - chr1_2:56833273-56833292 Msa0079100:intron 50.0%
!! GACGGTTTTGTAACCGCTAG+CGG - chr1_2:56833372-56833391 Msa0079100:intron 50.0%
AGACAAGGCCACTCAAAACC+AGG + chr1_2:56833790-56833809 None:intergenic 50.0%
GCTTTCCCTTGGAAATGCAC+GGG - chr1_2:56834409-56834428 Msa0079100:intron 50.0%
GTAAGCCCGTGCATTTCCAA+GGG + chr1_2:56834417-56834436 None:intergenic 50.0%
AGTAAGCCCGTGCATTTCCA+AGG + chr1_2:56834418-56834437 None:intergenic 50.0%
!! TTTAGCGAATCGACTTGGGG+GGG + chr1_2:56834790-56834809 None:intergenic 50.0%
!! TAGGTTGGTGAGATTGGGGT+AGG - chr1_2:56834899-56834918 Msa0079100:intron 50.0%
!! TTGGGGTAGGCTTTGGAGTT+TGG - chr1_2:56834912-56834931 Msa0079100:intron 50.0%
!! TGGGGTAGGCTTTGGAGTTT+GGG - chr1_2:56834913-56834932 Msa0079100:intron 50.0%
TGTACTTTGGTCTAGGGACC+TGG - chr1_2:56835234-56835253 Msa0079100:intron 50.0%
CACAAACGGGCCTAAAATCC+AGG + chr1_2:56835274-56835293 None:intergenic 50.0%
CTACCTGTCAGTGCATGCTA+AGG + chr1_2:56835569-56835588 None:intergenic 50.0%
! CTTAGCATGCACTGACAGGT+AGG - chr1_2:56835567-56835586 Msa0079100:intron 50.0%
! TAGCATGCACTGACAGGTAG+GGG - chr1_2:56835569-56835588 Msa0079100:intron 50.0%
GAGATGCAGTGTCCACTATC+CGG - chr1_2:56835785-56835804 Msa0079100:intron 50.0%
GCTGGAATCTGTTATCCCCT+TGG - chr1_2:56835867-56835886 Msa0079100:intron 50.0%
AAAGACCTTCTCAGCCCAAG+GGG + chr1_2:56835885-56835904 None:intergenic 50.0%
CAAAGACCTTCTCAGCCCAA+GGG + chr1_2:56835886-56835905 None:intergenic 50.0%
ACAAAGACCTTCTCAGCCCA+AGG + chr1_2:56835887-56835906 None:intergenic 50.0%
CTCGGCCATCGAGTTAGAAA+AGG + chr1_2:56836508-56836527 None:intergenic 50.0%
AACTCGATGGCCGAGAATGA+TGG - chr1_2:56836513-56836532 Msa0079100:intron 50.0%
ACTCGATGGCCGAGAATGAT+GGG - chr1_2:56836514-56836533 Msa0079100:intron 50.0%
GGTAAGGTGTGAAACGGTGA+AGG - chr1_2:56836566-56836585 Msa0079100:intron 50.0%
GGTGTGATGTTGGGAAAGAG+TGG + chr1_2:56837324-56837343 None:intergenic 50.0%
GGGGAATCTGAGTGAAGTTG+TGG + chr1_2:56837360-56837379 None:intergenic 50.0%
AGAGCAAAACGCAGAGAGGT+AGG + chr1_2:56837428-56837447 None:intergenic 50.0%
!!! TGGAGAAGTGTTTTGGGGTC+AGG + chr1_2:56837482-56837501 None:intergenic 50.0%
GCTGCGTTCGACCTTTCAAA+TGG - chr1_2:56837794-56837813 Msa0079100:intron 50.0%
GCACTAACCTCATCCAAGAC+AGG + chr1_2:56837821-56837840 None:intergenic 50.0%
ATACACCGACACGTGTCTAC+CGG + chr1_2:56837890-56837909 None:intergenic 50.0%
! GTAGACACGTGTCGGTGTAT+CGG - chr1_2:56837890-56837909 Msa0079100:intron 50.0%
TTTCGCCACTAAAAAGCGGG+AGG + chr1_2:56838573-56838592 None:intergenic 50.0%
GGCGAAACTTCCTTTGATGG+AGG - chr1_2:56838586-56838605 Msa0079100:intron 50.0%
! TTGACAGGCACTGCCAAATC+AGG - chr1_2:56838614-56838633 Msa0079100:intron 50.0%
!! CTTAGCACTTGGAAGGCGTT+TGG - chr1_2:56838713-56838732 Msa0079100:intron 50.0%
TCAATGGGACAGTATGGCCA+AGG - chr1_2:56838759-56838778 Msa0079100:intron 50.0%
TGGCCAAGGTGAGACACAAA+AGG - chr1_2:56838773-56838792 Msa0079100:intron 50.0%
GTTGTCCGCACTTACTTCAG+GGG - chr1_2:56840388-56840407 Msa0079100:intron 50.0%
TTGTCCGCACTTACTTCAGG+GGG - chr1_2:56840389-56840408 Msa0079100:intron 50.0%
!!! TCAGGGGGGCTTGTTTTACT+TGG - chr1_2:56840404-56840423 Msa0079100:intron 50.0%
! CTCTTCCGGCTTTAACGTCG+TGG + chr1_2:56832731-56832750 None:intergenic 55.0%
CACGACGTTAAAGCCGGAAG+AGG - chr1_2:56832729-56832748 Msa0079100:three_prime_UTR 55.0%
TCAGGAGAATCCGAAGCAGG+AGG + chr1_2:56832819-56832838 None:intergenic 55.0%
TGGTCAGGAGAATCCGAAGC+AGG + chr1_2:56832822-56832841 None:intergenic 55.0%
TGCTTCGGATTCTCCTGACC+AGG - chr1_2:56832821-56832840 Msa0079100:three_prime_UTR 55.0%
CGGATTCTCCTGACCAGGTT+CGG - chr1_2:56832826-56832845 Msa0079100:three_prime_UTR 55.0%
AGCTATTGCCGAACCTGGTC+AGG + chr1_2:56832837-56832856 None:intergenic 55.0%
TCCGAAGCTATTGCCGAACC+TGG + chr1_2:56832842-56832861 None:intergenic 55.0%
CATGGACCTGTTCCTGAACC+TGG - chr1_2:56832985-56833004 Msa0079100:three_prime_UTR 55.0%
CTGGTAACTGACTAGGGGGT+TGG - chr1_2:56833215-56833234 Msa0079100:CDS 55.0%
AGGGGGTTGGGTAGCTCAAA+TGG - chr1_2:56833228-56833247 Msa0079100:CDS 55.0%
TCCTGGTTCAAACCCGGACA+TGG - chr1_2:56833279-56833298 Msa0079100:intron 55.0%
TCCATGTCCGGGTTTGAACC+AGG + chr1_2:56833283-56833302 None:intergenic 55.0%
CCAGCTACTTCATCCGCTAG+CGG + chr1_2:56833388-56833407 None:intergenic 55.0%
! CTAGCGGATGAAGTAGCTGG+TGG - chr1_2:56833388-56833407 Msa0079100:CDS 55.0%
!!! TGGTGGTGCCTGGTTTTGAG+TGG - chr1_2:56833779-56833798 Msa0079100:CDS 55.0%
TTGGCAGGCAGCAAGACGTT+AGG - chr1_2:56834203-56834222 Msa0079100:intron 55.0%
TGGCAGGCAGCAAGACGTTA+GGG - chr1_2:56834204-56834223 Msa0079100:intron 55.0%
!! GTTTCGGCAGAAAGCACTGC+TGG - chr1_2:56834470-56834489 Msa0079100:intron 55.0%
GGCGTAGCACTGTTGCATAG+AGG - chr1_2:56834744-56834763 Msa0079100:intron 55.0%
!! ATCGACTTGGGGGGGAATAG+TGG + chr1_2:56834782-56834801 None:intergenic 55.0%
GGTGAGATTGGGGTAGGCTT+TGG - chr1_2:56834905-56834924 Msa0079100:intron 55.0%
!! GGGGTAGGCTTTGGAGTTTG+GGG - chr1_2:56834914-56834933 Msa0079100:intron 55.0%
GTTATCCCCTTGGGCTGAGA+AGG - chr1_2:56835877-56835896 Msa0079100:intron 55.0%
CTCGATGGCCGAGAATGATG+GGG - chr1_2:56836515-56836534 Msa0079100:intron 55.0%
TGTGTCCGGTAGACACGTGT+CGG - chr1_2:56837882-56837901 Msa0079100:intron 55.0%
GCACATCACCACGATACACG+TGG - chr1_2:56837919-56837938 Msa0079100:intron 55.0%
CAGTCTCCCATGCTCGAGAT+AGG + chr1_2:56838538-56838557 None:intergenic 55.0%
!! GGAAGGCGTTTGGTATCTGC+TGG - chr1_2:56838723-56838742 Msa0079100:intron 55.0%
CCAAACTGCAGTTGGCAACC+AGG + chr1_2:56839992-56840011 None:intergenic 55.0%
CCTGGTTGCCAACTGCAGTT+TGG - chr1_2:56839989-56840008 Msa0079100:intron 55.0%
GCAGTGCTCCAAACTGCAGT+TGG + chr1_2:56840000-56840019 None:intergenic 55.0%
!! ACTGCAGTTTGGAGCACTGC+AGG - chr1_2:56840000-56840019 Msa0079100:intron 55.0%
TGTCCGCACTTACTTCAGGG+GGG - chr1_2:56840390-56840409 Msa0079100:intron 55.0%
AAGCCCCCCTGAAGTAAGTG+CGG + chr1_2:56840396-56840415 None:intergenic 55.0%
GAGCGAGACATGGTGACACC+AGG - chr1_2:56832687-56832706 Msa0079100:three_prime_UTR 60.0%
! CCGCTAGCGGATGAAGTAGC+TGG - chr1_2:56833385-56833404 Msa0079100:CDS 60.0%
GCGGATGAAGTAGCTGGTGG+CGG - chr1_2:56833391-56833410 Msa0079100:CDS 60.0%
CGGATGAAGTAGCTGGTGGC+GGG - chr1_2:56833392-56833411 Msa0079100:CDS 60.0%
!! GCTGGCAAATTGGTGGTGCC+TGG - chr1_2:56833769-56833788 Msa0079100:CDS 60.0%
! GGGCCTTAGCATGCACTGAC+AGG - chr1_2:56835563-56835582 Msa0079100:intron 60.0%
TGGGCTAAGGCTCGCAGTGT+TGG + chr1_2:56836729-56836748 None:intergenic 60.0%
! CGTGTCGGTGTATCGGACAC+AGG - chr1_2:56837897-56837916 Msa0079100:intron 60.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 56832606 56841028 56832606 ID=Msa0079100;Name=Msa0079100
chr1_2 mRNA 56832606 56841028 56832606 ID=Msa0079100-mRNA-1;Parent=Msa0079100;Name=Msa0079100-mRNA-1;_AED=0.24;_eAED=0.24;_QI=72|0.83|0.84|1|1|1|13|574|510
chr1_2 exon 56832606 56833290 56832606 ID=Msa0079100-mRNA-1:exon:17921;Parent=Msa0079100-mRNA-1
chr1_2 exon 56833385 56833475 56833385 ID=Msa0079100-mRNA-1:exon:17920;Parent=Msa0079100-mRNA-1
chr1_2 exon 56833557 56833627 56833557 ID=Msa0079100-mRNA-1:exon:17919;Parent=Msa0079100-mRNA-1
chr1_2 exon 56833722 56833820 56833722 ID=Msa0079100-mRNA-1:exon:17918;Parent=Msa0079100-mRNA-1
chr1_2 exon 56834840 56834916 56834840 ID=Msa0079100-mRNA-1:exon:17917;Parent=Msa0079100-mRNA-1
chr1_2 exon 56834999 56835131 56834999 ID=Msa0079100-mRNA-1:exon:17916;Parent=Msa0079100-mRNA-1
chr1_2 exon 56835981 56836040 56835981 ID=Msa0079100-mRNA-1:exon:17915;Parent=Msa0079100-mRNA-1
chr1_2 exon 56836123 56836437 56836123 ID=Msa0079100-mRNA-1:exon:17914;Parent=Msa0079100-mRNA-1
chr1_2 exon 56837799 56837878 56837799 ID=Msa0079100-mRNA-1:exon:17913;Parent=Msa0079100-mRNA-1
chr1_2 exon 56839143 56839224 56839143 ID=Msa0079100-mRNA-1:exon:17912;Parent=Msa0079100-mRNA-1
chr1_2 exon 56839340 56839424 56839340 ID=Msa0079100-mRNA-1:exon:17911;Parent=Msa0079100-mRNA-1
chr1_2 exon 56840519 56840682 56840519 ID=Msa0079100-mRNA-1:exon:17910;Parent=Msa0079100-mRNA-1
chr1_2 exon 56840792 56841028 56840792 ID=Msa0079100-mRNA-1:exon:17909;Parent=Msa0079100-mRNA-1
chr1_2 five_prime_UTR 56840957 56841028 56840957 ID=Msa0079100-mRNA-1:five_prime_utr;Parent=Msa0079100-mRNA-1
chr1_2 CDS 56840792 56840956 56840792 ID=Msa0079100-mRNA-1:cds;Parent=Msa0079100-mRNA-1
chr1_2 CDS 56840519 56840682 56840519 ID=Msa0079100-mRNA-1:cds;Parent=Msa0079100-mRNA-1
chr1_2 CDS 56839340 56839424 56839340 ID=Msa0079100-mRNA-1:cds;Parent=Msa0079100-mRNA-1
chr1_2 CDS 56839143 56839224 56839143 ID=Msa0079100-mRNA-1:cds;Parent=Msa0079100-mRNA-1
chr1_2 CDS 56837799 56837878 56837799 ID=Msa0079100-mRNA-1:cds;Parent=Msa0079100-mRNA-1
chr1_2 CDS 56836123 56836437 56836123 ID=Msa0079100-mRNA-1:cds;Parent=Msa0079100-mRNA-1
chr1_2 CDS 56835981 56836040 56835981 ID=Msa0079100-mRNA-1:cds;Parent=Msa0079100-mRNA-1
chr1_2 CDS 56834999 56835131 56834999 ID=Msa0079100-mRNA-1:cds;Parent=Msa0079100-mRNA-1
chr1_2 CDS 56834840 56834916 56834840 ID=Msa0079100-mRNA-1:cds;Parent=Msa0079100-mRNA-1
chr1_2 CDS 56833722 56833820 56833722 ID=Msa0079100-mRNA-1:cds;Parent=Msa0079100-mRNA-1
chr1_2 CDS 56833557 56833627 56833557 ID=Msa0079100-mRNA-1:cds;Parent=Msa0079100-mRNA-1
chr1_2 CDS 56833385 56833475 56833385 ID=Msa0079100-mRNA-1:cds;Parent=Msa0079100-mRNA-1
chr1_2 CDS 56833180 56833290 56833180 ID=Msa0079100-mRNA-1:cds;Parent=Msa0079100-mRNA-1
chr1_2 three_prime_UTR 56832606 56833179 56832606 ID=Msa0079100-mRNA-1:three_prime_utr;Parent=Msa0079100-mRNA-1
Gene Sequence

>Msa0079100

ATGGAAGCAGAGCGAGACATGGTGACACCAGGAGAAGTAATAGGCAAAACCCACGACGTTAAAGCCGGAAGAGGAACATACACAGCAACTCACAACAACACAGTCTACGCTTCCTTAACTGGTTTCCGTCACACCATACCTCCTGCTTCGGATTCTCCTGACCAGAGACCGATTATTGAAGTAACTGGTCATAAAGCTCATGGACCTGTTCCTGAACCTGGATCTGTTGTTATTGTTAGGGTTACTAAAGTGATGACTAAAATTGCTGAAGCTGATATTATGTGTGTTGGTCAGAAGTCTGTTCGTGAAAAATTTACTGGCGTCATTAGGCAGCAAGACGTTAGGGCAACTGAGATTGATAAAGTAGACATGCACTTGTCTTTTCGTCCTGGTGACATTGTTAAAGCTCTTGTGCTTTCCCTTGGAAATGCACGGGCTTACTTTCTGACAACTGCAAAAAATGAGCTTGGTGTTGTTTCGGCAGAAAGCACTGCTGGTGCAACTTTGGTTCCAATAAGTTGGACTGAGATGCAGTGTCCACTATCCGGTCAAATTGAACAAAGAAAGGTTGCAAAGTGGCTGACACAGTTTGTTGCATTGCATACACAGCTTCAATCAATCATGGTTGGAATGAAGACAATAATGGCTTCACCTTCTCTTCATTGTTTTCCTTCTCTCTCCAAATTCTGCTCTTTAACACCCACTCTTTCCCAACATCACACCCAATCATTCCCTTCCACAACTTCACTCAGATTCCCCCATACTACCACTTCTACCAATTTCAATACCATTTTTCTTCACAAACCTACCTCTCTGCGTTTTGCTCTAACAGAGTCCAATTCGCCTAATTCTACAGAACCTGACCCCAAAACACTTCTCCAACAAATTGCTGACAGTTTTGATCTTCCTCCTGATTACTTTGGAAAGTTTCCCAACGATCTTCGATTGGACTGCGGTAAAGAGTTAGGAGAGACATTGCTAAACCTATCTCGAGCATGGGAGACTGCCGATACATCATCCTCCCGCTTTTTAGTGGCGAAACTTCCTTTGATGGAGGCTAATTTGACAGGCACTGCCAAATCAGCACTTGGAAGGCGTTTGGTATCTGCTGGAAAAAGGTTTCAGTCAATGGGACAGTATGGCCAAGGTGAGACACAAAAGATCGCAAAAGCAATGATTGAGGCTGGGAGAGCTCTATCTGCTAGTTCAACCTCTTCAGTAATAGATGAACAACCCAAAGAGAAAAATAAGACTCTGAAGTTTGGAGCACTGCAGGTTGAAATTACACCCACTAAAGCAAATATTGGGGCCGCAATTGCATTTGTTTTTGGGATTCTTACATGGGAGATAGCTCAAGGAATTCAAAACACTCCGGAGAGTTCTTTGCAGTATGCAAATGACAATGCTTTGATGCTTGCTAAGTCTTTGAGGGGAACATTGCTTACTATTTTTTACGGCTCCACTTTGTTGTCCGCACTTACTTCAGGGGGGCTTGTTTTACTTGGTATACAGCTCAAATCAGAGAAAAATTGA

Protein sequence

>Msa0079100

MEAERDMVTPGEVIGKTHDVKAGRGTYTATHNNTVYASLTGFRHTIPPASDSPDQRPIIEVTGHKAHGPVPEPGSVVIVRVTKVMTKIAEADIMCVGQKSVREKFTGVIRQQDVRATEIDKVDMHLSFRPGDIVKALVLSLGNARAYFLTTAKNELGVVSAESTAGATLVPISWTEMQCPLSGQIEQRKVAKWLTQFVALHTQLQSIMVGMKTIMASPSLHCFPSLSKFCSLTPTLSQHHTQSFPSTTSLRFPHTTTSTNFNTIFLHKPTSLRFALTESNSPNSTEPDPKTLLQQIADSFDLPPDYFGKFPNDLRLDCGKELGETLLNLSRAWETADTSSSRFLVAKLPLMEANLTGTAKSALGRRLVSAGKRFQSMGQYGQGETQKIAKAMIEAGRALSASSTSSVIDEQPKEKNKTLKFGALQVEITPTKANIGAAIAFVFGILTWEIAQGIQNTPESSLQYANDNALMLAKSLRGTLLTIFYGSTLLSALTSGGLVLLGIQLKSEKN*