AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0461150


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0461150 MtrunA17_Chr3g0111011 97.727 264 6 0 1 264 1 264 0.0 527
Msa0461150 MtrunA17_Chr1g0212841 60.000 210 84 0 55 264 3 212 3.52e-93 273
Msa0461150 MtrunA17_Chr1g0181861 27.363 201 127 7 72 259 36 230 2.05e-14 70.9
Msa0461150 MtrunA17_Chr7g0263221 27.094 203 129 7 72 261 35 231 4.63e-12 64.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0461150 AT5G16710.1 67.451 255 73 3 20 264 4 258 1.04e-125 358
Msa0461150 AT1G75270.1 62.201 209 78 1 55 262 3 211 1.13e-95 280
Msa0461150 AT1G19570.1 57.895 209 87 1 55 262 3 211 1.55e-86 257
Msa0461150 AT1G19550.1 47.531 162 62 1 101 262 13 151 7.15e-46 151

Find 94 sgRNAs with CRISPR-Local

Find 404 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAGATCTTCTCTACATTTAT+TGG 0.132703 3_3:-59206378 Msa0461150:CDS
TTTCTTAAATCCACCAATTT+TGG 0.148425 3_3:+59207229 None:intergenic
TATAGGGCAGCACTAGTTTA+AGG 0.162927 3_3:+59204520 None:intergenic
AGCAACACTCTTTGGCTAAA+AGG 0.217920 3_3:+59207283 None:intergenic
AACAATTATGCTTTAGTTCA+TGG 0.222431 3_3:+59204645 None:intergenic
TGCTCTACATGAAGCCTTCA+TGG 0.259323 3_3:+59204581 None:intergenic
TTTACCTTATGAGCCAAAAT+TGG 0.268108 3_3:-59207242 Msa0461150:CDS
CTGACCTTGGTCTTAATAAA+AGG 0.302468 3_3:-59204459 Msa0461150:three_prime_UTR
CTGAAGACATTGATACTCTA+AGG 0.314821 3_3:+59209619 None:intergenic
GCCTGTTCTGTTCCATCATT+GGG 0.317203 3_3:+59206336 None:intergenic
CTTTCCATCAAAATTTATTA+CGG 0.320003 3_3:+59207060 None:intergenic
TTACAGTCTCCAATCTTGTT+AGG 0.323971 3_3:+59209546 None:intergenic
TGCCTGTTCTGTTCCATCAT+TGG 0.329262 3_3:+59206335 None:intergenic
GCGTGCGTTTGTTTGTTTGT+AGG 0.332057 3_3:+59209775 None:intergenic
CTTTGGGACATTATAAGAAA+TGG 0.339739 3_3:-59205659 Msa0461150:CDS
TCATTTGCTTGAGTCTCTTA+AGG 0.341122 3_3:-59204761 Msa0461150:three_prime_UTR
TATCATCAACCCTCTACTTT+AGG 0.351222 3_3:+59204807 None:intergenic
TACCATTTGGAGATTGCTTT+GGG 0.358598 3_3:-59205675 Msa0461150:CDS
GCCACATATTGTAACATGTT+AGG 0.377702 3_3:-59204610 Msa0461150:three_prime_UTR
CCAGTGTCAGCAACACTCTT+TGG 0.382066 3_3:+59207275 None:intergenic
GCTAAATTACATGAAGATAT+TGG 0.384228 3_3:+59204680 None:intergenic
GGACAAGAAGATCACCATTC+TGG 0.384402 3_3:+59207202 None:intergenic
CTTACCACTCCTAACAAGAT+TGG 0.386618 3_3:-59209555 Msa0461150:CDS
TACCTTCAGGACTGATTTCA+AGG 0.389717 3_3:+59207089 None:intergenic
TTTCCATCAAAATTTATTAC+GGG 0.394965 3_3:+59207061 None:intergenic
ATACCATTTGGAGATTGCTT+TGG 0.401508 3_3:-59205676 Msa0461150:CDS
AGTTCCTCCTTCTGAGCCAT+TGG 0.415341 3_3:-59209598 Msa0461150:CDS
TTTGTAGGAGTAAGAGATGA+AGG 0.427341 3_3:+59209790 None:intergenic
TTCCTTGAGGTAATCATTGA+AGG 0.431943 3_3:+59206293 None:intergenic
GCTTTCTTTACCCTCAATAT+CGG 0.432392 3_3:-59204434 Msa0461150:three_prime_UTR
ATAGCTTTGGTCCTAGTGAT+AGG 0.433953 3_3:+59205697 None:intergenic
ATTACGGGAACTTTACCTTC+AGG 0.438595 3_3:+59207076 None:intergenic
TCCCAATGATGGAACAGAAC+AGG 0.440171 3_3:-59206337 Msa0461150:CDS
TCAGGTGGTGTCACCAATGG+TGG 0.440607 3_3:+59206983 None:intergenic
ATCTCCAAATGGTATAGCTT+TGG 0.443085 3_3:+59205684 None:intergenic
AATACTGAAACCGTTGTTGA+AGG 0.447254 3_3:+59209647 None:intergenic
AGGACCAAAGCTATACCATT+TGG 0.449238 3_3:-59205688 Msa0461150:CDS
CTAGTTGAAACGGCGTAGCT+TGG 0.457758 3_3:+59209672 None:intergenic
GGTGTCACCAATGGTGGGCT+AGG 0.458979 3_3:+59206989 None:intergenic
CCCTAACATGTTACAATATG+TGG 0.462740 3_3:+59204609 None:intergenic
ACGGTAACGAAGGTGGTTAA+CGG 0.463252 3_3:+59209695 None:intergenic
GCAACACTCTTTGGCTAAAA+GGG 0.467390 3_3:+59207284 None:intergenic
ATTGGTGACACCACCTGAAA+AGG 0.468553 3_3:-59206978 Msa0461150:CDS
CCACATATTGTAACATGTTA+GGG 0.476405 3_3:-59204609 Msa0461150:three_prime_UTR
TAGTTCATGGTGAATAATCA+AGG 0.477864 3_3:+59204658 None:intergenic
ACCTTATGAGCCAAAATTGG+TGG 0.488536 3_3:-59207239 Msa0461150:CDS
ATGTGTTTCCCATTGACAAA+AGG 0.492553 3_3:+59205732 None:intergenic
AAGAGCAAAGATCCCAATGA+TGG 0.512786 3_3:-59206348 Msa0461150:CDS
GTACATTTGAACCGATATTG+AGG 0.515382 3_3:+59204423 None:intergenic
GGGTGATGTGCCACTGACCT+TGG 0.518400 3_3:-59204472 Msa0461150:three_prime_UTR
CCAAAGAGTGTTGCTGACAC+TGG 0.519488 3_3:-59207275 Msa0461150:CDS
GTCCCAAAGCAATCTCCAAA+TGG 0.525825 3_3:+59205673 None:intergenic
TTGAAACGGCGTAGCTTGGA+CGG 0.528321 3_3:+59209676 None:intergenic
CAGCCGGAGGATGTCATTGA+AGG 0.529861 3_3:-59204837 Msa0461150:CDS
AAAGAAAAGAGTAGAATGAG+TGG 0.530082 3_3:+59204783 None:intergenic
GCAACTTCCAATGGCTCAGA+AGG 0.530234 3_3:+59209591 None:intergenic
CTTCAAGTAAGACTTCAAAA+AGG 0.533977 3_3:+59205617 None:intergenic
AGATTTAATCACACAAACAT+TGG 0.534999 3_3:-59207023 Msa0461150:CDS
AATATATACTCAACTAGAGT+CGG 0.536748 3_3:+59204732 None:intergenic
GCTTTAACAGCAACTTCCAA+TGG 0.538010 3_3:+59209582 None:intergenic
GTTGAAGGAGCTAGTTGAAA+CGG 0.542410 3_3:+59209662 None:intergenic
TACATTTGAACCGATATTGA+GGG 0.545820 3_3:+59204424 None:intergenic
TGAATTCTAACGGTGGACAT+TGG 0.546517 3_3:+59209744 None:intergenic
AGTAAGAGATGAAGGTGATG+TGG 0.549314 3_3:+59209798 None:intergenic
CAGGTGGTGTCACCAATGGT+GGG 0.551034 3_3:+59206984 None:intergenic
CTCCTTCAATGATTACCTCA+AGG 0.552514 3_3:-59206295 Msa0461150:CDS
CATTAACACACGTGCACAGC+CGG 0.557161 3_3:-59204853 Msa0461150:CDS
GAAGTATCCTAGCCCACCAT+TGG 0.558980 3_3:-59206996 Msa0461150:CDS
TGAAGACATTGATACTCTAA+GGG 0.561246 3_3:+59209620 None:intergenic
CAACCTTCAATGACATCCTC+CGG 0.565403 3_3:+59204834 None:intergenic
TTCCTTGAAATCAGTCCTGA+AGG 0.565919 3_3:-59207091 Msa0461150:CDS
TCAACTAGCTCCTTCAACAA+CGG 0.572004 3_3:-59209657 Msa0461150:CDS
CGGAGGATGTCATTGAAGGT+TGG 0.572766 3_3:-59204833 Msa0461150:CDS
TGCTGAAACTTGAATTCTAA+CGG 0.573659 3_3:+59209734 None:intergenic
GTCTCCAATCTTGTTAGGAG+TGG 0.575745 3_3:+59209551 None:intergenic
ACGAAGGTGGTTAACGGTGG+CGG 0.577042 3_3:+59209701 None:intergenic
ATGTTAGGGAGAGGCCATGA+AGG 0.588445 3_3:-59204595 Msa0461150:three_prime_UTR
TATTGTAACATGTTAGGGAG+AGG 0.592034 3_3:-59204604 Msa0461150:three_prime_UTR
AACATGTTACAATATGTGGC+CGG 0.598307 3_3:+59204613 None:intergenic
TTTATTAAGACCAAGGTCAG+TGG 0.601261 3_3:+59204462 None:intergenic
ACTTCCAATGGCTCAGAAGG+AGG 0.609075 3_3:+59209594 None:intergenic
ATTTAAGAAACAAACCAGAA+TGG 0.617097 3_3:-59207216 Msa0461150:intron
AGGTTGGCGTCCTAAAGTAG+AGG 0.619348 3_3:-59204817 Msa0461150:CDS
AGCTTGGACGGTAACGAAGG+TGG 0.635574 3_3:+59209688 None:intergenic
AAGAGTGTTGCTGACACTGG+AGG 0.648023 3_3:-59207272 Msa0461150:CDS
GGTTGGCGTCCTAAAGTAGA+GGG 0.649275 3_3:-59204816 Msa0461150:CDS
ATTGGTATTCAACTCTACAG+TGG 0.670026 3_3:+59204698 None:intergenic
TCTGCGGCTGACCTATCACT+AGG 0.671764 3_3:-59205708 Msa0461150:CDS
CGTAGCTTGGACGGTAACGA+AGG 0.683732 3_3:+59209685 None:intergenic
GAAGACATTGATACTCTAAG+GGG 0.685434 3_3:+59209621 None:intergenic
TAACACACGTGCACAGCCGG+AGG 0.694276 3_3:-59204850 Msa0461150:CDS
CAATGGGAAACACATATCTG+CGG 0.696422 3_3:-59205724 Msa0461150:CDS
GTAACGAAGGTGGTTAACGG+TGG 0.742876 3_3:+59209698 None:intergenic
TGAAACTTGAATTCTAACGG+TGG 0.756125 3_3:+59209737 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATGAATCTTTTTTTTTTTT+TGG - chr3_3:59205300-59205319 Msa0461150:intron 10.0%
!!! TATTCTCTATTTTTTTTTTT+TGG - chr3_3:59205956-59205975 Msa0461150:intron 10.0%
!!! ATTTTTGTTTATATTTGTAA+AGG - chr3_3:59206138-59206157 Msa0461150:intron 10.0%
!!! TTTTTTTTTTGAAAAATACA+TGG - chr3_3:59207218-59207237 Msa0461150:CDS 10.0%
!!! TTTTTAATTTTAATACATTC+AGG - chr3_3:59207552-59207571 Msa0461150:intron 10.0%
!!! TTTTAATTTTAATACATTCA+GGG - chr3_3:59207553-59207572 Msa0461150:intron 10.0%
!! ATGTAAATATAAAAATAAAG+AGG + chr3_3:59207623-59207642 None:intergenic 10.0%
!!! TCTTTATTTTTATATTTACA+TGG - chr3_3:59207622-59207641 Msa0461150:intron 10.0%
!!! CATAAATTTTGAAAATGTTT+AGG - chr3_3:59204833-59204852 Msa0461150:CDS 15.0%
!!! TTGTAATTTTGATATATTCA+AGG + chr3_3:59207390-59207409 None:intergenic 15.0%
!!! TTATAAACTTTCAGTATTTT+AGG - chr3_3:59207862-59207881 Msa0461150:intron 15.0%
!!! TTATATGAATATAAGTGTTT+TGG + chr3_3:59208219-59208238 None:intergenic 15.0%
!! TTATATTCATATAACTTTGA+GGG - chr3_3:59208225-59208244 Msa0461150:intron 15.0%
!! TAAAAAATTTATACGAAAGA+AGG + chr3_3:59208301-59208320 None:intergenic 15.0%
!! TGAATAGTTTATTAAATTTG+TGG - chr3_3:59208616-59208635 Msa0461150:intron 15.0%
!! CATTATTATTCATTTACATT+CGG + chr3_3:59208994-59209013 None:intergenic 15.0%
!! TTGTATTTAATAATCCTTAA+TGG - chr3_3:59209127-59209146 Msa0461150:intron 15.0%
!!! ACACAATTATTTCTTATATA+GGG + chr3_3:59209582-59209601 None:intergenic 15.0%
!!! ATACACATTTGATAAATTTT+CGG + chr3_3:59209690-59209709 None:intergenic 15.0%
!!! TATTTGATAATACATCTTTT+TGG + chr3_3:59209726-59209745 None:intergenic 15.0%
!! AATAACAAAAACCATGAAAA+GGG + chr3_3:59204572-59204591 None:intergenic 20.0%
!! AAATAACAAAAACCATGAAA+AGG + chr3_3:59204573-59204592 None:intergenic 20.0%
!! CATTGAATACTTAATGTATT+CGG + chr3_3:59205284-59205303 None:intergenic 20.0%
!! TTTGCTAGTATATAATACTA+AGG - chr3_3:59205357-59205376 Msa0461150:intron 20.0%
!!! TTTATTTTTGCTTTAGTTCA+TGG - chr3_3:59205869-59205888 Msa0461150:intron 20.0%
!! AAATCAAAGAACAAAGATAA+AGG + chr3_3:59206564-59206583 None:intergenic 20.0%
!!! TTTGTTCTTTGATTTAATTG+TGG - chr3_3:59206569-59206588 Msa0461150:intron 20.0%
!! TGAATAAACAATTCAACAAA+GGG + chr3_3:59206777-59206796 None:intergenic 20.0%
!! TTTCCATCAAAATTTATTAC+GGG + chr3_3:59207025-59207044 None:intergenic 20.0%
!! CTTTCCATCAAAATTTATTA+CGG + chr3_3:59207026-59207045 None:intergenic 20.0%
!!! TAATAAATTTTGATGGAAAG+TGG - chr3_3:59207026-59207045 Msa0461150:CDS 20.0%
!!! AATAAATTTTGATGGAAAGT+GGG - chr3_3:59207027-59207046 Msa0461150:CDS 20.0%
!! AAAATAAAGAGGAATAAAGA+TGG + chr3_3:59207612-59207631 None:intergenic 20.0%
!! AGATGTTACAAAACATTAAA+CGG - chr3_3:59207997-59208016 Msa0461150:intron 20.0%
!! CAATTATTCATAAACTTTAC+AGG + chr3_3:59208114-59208133 None:intergenic 20.0%
!! CTGTAAAGTTTATGAATAAT+TGG - chr3_3:59208112-59208131 Msa0461150:intron 20.0%
!! CTTATATTCATATAACTTTG+AGG - chr3_3:59208224-59208243 Msa0461150:intron 20.0%
!! AGTGAAAATGATTTATCAAT+AGG - chr3_3:59208684-59208703 Msa0461150:intron 20.0%
!! GTGAAAATGATTTATCAATA+GGG - chr3_3:59208685-59208704 Msa0461150:intron 20.0%
!!! CATAATTGTTATTTTATAGC+CGG - chr3_3:59209451-59209470 Msa0461150:intron 20.0%
!!! CACACAATTATTTCTTATAT+AGG + chr3_3:59209583-59209602 None:intergenic 20.0%
!! AAAAATTCTTACCCTTTTCA+TGG - chr3_3:59204558-59204577 Msa0461150:three_prime_UTR 25.0%
!!! TTGAGCTTGTTTTTTTGTAT+TGG - chr3_3:59204599-59204618 Msa0461150:three_prime_UTR 25.0%
!! ATTAGTATTTGAGACATTGA+TGG - chr3_3:59204642-59204661 Msa0461150:three_prime_UTR 25.0%
! TTTAATGTAATCACAAGTGT+CGG + chr3_3:59204768-59204787 None:intergenic 25.0%
! GATTACATTAAATTATGTCG+AGG - chr3_3:59204776-59204795 Msa0461150:three_prime_UTR 25.0%
! AAAATGTTTAGGAGTAAAGA+TGG - chr3_3:59204844-59204863 Msa0461150:CDS 25.0%
! AAATGTTTAGGAGTAAAGAT+GGG - chr3_3:59204845-59204864 Msa0461150:CDS 25.0%
! GAAATTCAAATCACAAACAA+TGG - chr3_3:59205064-59205083 Msa0461150:intron 25.0%
!! TGAATTAAGTTTTACATCGT+TGG - chr3_3:59205180-59205199 Msa0461150:intron 25.0%
!!! GTTTTTTGCTAATAAATGTC+TGG + chr3_3:59205218-59205237 None:intergenic 25.0%
! TATAATAGACCAAATACACT+AGG + chr3_3:59205257-59205276 None:intergenic 25.0%
! TAGTAATTAGGAATTTGATC+AGG + chr3_3:59205655-59205674 None:intergenic 25.0%
! TGATCAAATTCCTAATTACT+AGG - chr3_3:59205654-59205673 Msa0461150:CDS 25.0%
!! TCTAAAATTTAGCTAGTAAC+TGG + chr3_3:59205726-59205745 None:intergenic 25.0%
!!! GTTTTGAACTTCTATTAAGA+TGG - chr3_3:59205818-59205837 Msa0461150:intron 25.0%
! CTGAATAAACAATTCAACAA+AGG + chr3_3:59206778-59206797 None:intergenic 25.0%
! CTTTGTTGAATTGTTTATTC+AGG - chr3_3:59206776-59206795 Msa0461150:intron 25.0%
!! TTTCTTAAATCCACCAATTT+TGG + chr3_3:59206857-59206876 None:intergenic 25.0%
! ATTTAAGAAACAAACCAGAA+TGG - chr3_3:59206867-59206886 Msa0461150:intron 25.0%
! CAACAAAACAAGTTATTACA+AGG + chr3_3:59206965-59206984 None:intergenic 25.0%
!!! CTTGTAATAACTTGTTTTGT+TGG - chr3_3:59206963-59206982 Msa0461150:intron 25.0%
! AGATTTAATCACACAAACAT+TGG - chr3_3:59207060-59207079 Msa0461150:CDS 25.0%
! TTATACATTTCCTTGTCATT+TGG - chr3_3:59207148-59207167 Msa0461150:intron 25.0%
!! TTCTTTCGTTAGCAATTTTA+TGG + chr3_3:59207515-59207534 None:intergenic 25.0%
! AAGATCTTCTCTACATTTAT+TGG - chr3_3:59207705-59207724 Msa0461150:intron 25.0%
! TTTGTAACATCTTATGTAGA+TGG + chr3_3:59207989-59208008 None:intergenic 25.0%
! GATGTTACAAAACATTAAAC+GGG - chr3_3:59207998-59208017 Msa0461150:intron 25.0%
! ATGTTACAAAACATTAAACG+GGG - chr3_3:59207999-59208018 Msa0461150:intron 25.0%
! AACAGTAATGTATATCAAGA+GGG + chr3_3:59208074-59208093 None:intergenic 25.0%
! TAACAGTAATGTATATCAAG+AGG + chr3_3:59208075-59208094 None:intergenic 25.0%
!!! GCTCTAAATTCAAATGTTTT+CGG - chr3_3:59208734-59208753 Msa0461150:intron 25.0%
! CTTTGAATATACGGAAAAAT+TGG + chr3_3:59208783-59208802 None:intergenic 25.0%
!! ATTTTTCCGTATATTCAAAG+AGG - chr3_3:59208783-59208802 Msa0461150:intron 25.0%
!!! CATTTTGAGTATTGATGAAA+AGG + chr3_3:59208841-59208860 None:intergenic 25.0%
!! TACTCAAAATGTTTTCAGTA+AGG - chr3_3:59208850-59208869 Msa0461150:intron 25.0%
!! ACTCAAAATGTTTTCAGTAA+GGG - chr3_3:59208851-59208870 Msa0461150:intron 25.0%
!! CAATTGGTAATTGTACAAAA+GGG + chr3_3:59208919-59208938 None:intergenic 25.0%
! AAACAAAGTAAACTCCATTA+AGG + chr3_3:59209144-59209163 None:intergenic 25.0%
! AATATATACTCAACTAGAGT+CGG + chr3_3:59209354-59209373 None:intergenic 25.0%
! GCTAAATTACATGAAGATAT+TGG + chr3_3:59209406-59209425 None:intergenic 25.0%
!! AACAATTATGCTTTAGTTCA+TGG + chr3_3:59209441-59209460 None:intergenic 25.0%
TGCTGAAACTTGAATTCTAA+CGG + chr3_3:59204352-59204371 None:intergenic 30.0%
TGAAGACATTGATACTCTAA+GGG + chr3_3:59204466-59204485 None:intergenic 30.0%
! ATTTGAGACATTGATGGTAT+TGG - chr3_3:59204648-59204667 Msa0461150:three_prime_UTR 30.0%
!! ATGGTATTGGTAGAAAGAAT+AGG - chr3_3:59204661-59204680 Msa0461150:three_prime_UTR 30.0%
!! TGGTATTGGTAGAAAGAATA+GGG - chr3_3:59204662-59204681 Msa0461150:three_prime_UTR 30.0%
GTTATGAATAATCTGTTGCA+TGG - chr3_3:59204692-59204711 Msa0461150:three_prime_UTR 30.0%
AATGTTTAGGAGTAAAGATG+GGG - chr3_3:59204846-59204865 Msa0461150:CDS 30.0%
TAAAATCAAATCCTACCCTT+GGG + chr3_3:59205011-59205030 None:intergenic 30.0%
ATAAAATCAAATCCTACCCT+TGG + chr3_3:59205012-59205031 None:intergenic 30.0%
AATTCACTCAAGTAGTATAC+AGG + chr3_3:59205166-59205185 None:intergenic 30.0%
TTTGCTAATAAATGTCTGGA+GGG + chr3_3:59205214-59205233 None:intergenic 30.0%
! TTTTGCTAATAAATGTCTGG+AGG + chr3_3:59205215-59205234 None:intergenic 30.0%
TATTGAATGCCTAGTGTATT+TGG - chr3_3:59205245-59205264 Msa0461150:intron 30.0%
TACTGTTCATGTATTGAGTA+CGG + chr3_3:59205555-59205574 None:intergenic 30.0%
ATACATGAACAGTAACCAAA+TGG - chr3_3:59205561-59205580 Msa0461150:intron 30.0%
AACCAAATGGTCAATTGAAT+CGG - chr3_3:59205574-59205593 Msa0461150:intron 30.0%
TAATTAGGAATTTGATCAGG+AGG + chr3_3:59205652-59205671 None:intergenic 30.0%
AAAAAGGAGTCCTAGTAATT+AGG + chr3_3:59205667-59205686 None:intergenic 30.0%
ACTGGTCATGTATGATTTAT+TGG + chr3_3:59205708-59205727 None:intergenic 30.0%
TAGTTCATGGATGTAGTAAA+TGG - chr3_3:59205882-59205901 Msa0461150:intron 30.0%
GTCAAAAACACAGTAGTTAT+AGG + chr3_3:59206255-59206274 None:intergenic 30.0%
AGAAAATATAACCTAGAGAG+AGG - chr3_3:59206291-59206310 Msa0461150:CDS 30.0%
GAAAATATAACCTAGAGAGA+GGG - chr3_3:59206292-59206311 Msa0461150:CDS 30.0%
TAATAATTCCTAACTACCCA+AGG + chr3_3:59206373-59206392 None:intergenic 30.0%
AGTTAGGAATTATTAGAGGA+AGG - chr3_3:59206378-59206397 Msa0461150:CDS 30.0%
AGAACAAACTAGAGAAAGTT+TGG + chr3_3:59206406-59206425 None:intergenic 30.0%
! TAGGTTGCTAGATTTACTTT+TGG - chr3_3:59206606-59206625 Msa0461150:intron 30.0%
AGCTATAGACTATAATCACT+TGG - chr3_3:59206748-59206767 Msa0461150:intron 30.0%
TTTACCTTATGAGCCAAAAT+TGG - chr3_3:59206841-59206860 Msa0461150:intron 30.0%
!!! ATAACTTGTTTTGTTGGTTC+AGG - chr3_3:59206969-59206988 Msa0461150:intron 30.0%
! GTTCCCGTAATAAATTTTGA+TGG - chr3_3:59207019-59207038 Msa0461150:CDS 30.0%
CAAATTATCTCCAAATGACA+AGG + chr3_3:59207161-59207180 None:intergenic 30.0%
! CTTGTCATTTGGAGATAATT+TGG - chr3_3:59207159-59207178 Msa0461150:intron 30.0%
AGTAGTAGGGAAAAACATAA+CGG + chr3_3:59207300-59207319 None:intergenic 30.0%
! CATGTGATTTTGTCTATAGT+GGG - chr3_3:59207679-59207698 Msa0461150:intron 30.0%
! AAAGTCATACATTTTCCTTG+AGG + chr3_3:59207806-59207825 None:intergenic 30.0%
AAGATTGCAAACAAATAGCA+GGG + chr3_3:59207841-59207860 None:intergenic 30.0%
TTATGTAGATGGAGTATAAG+AGG + chr3_3:59207978-59207997 None:intergenic 30.0%
ATAGTCAGCAAATAAATAGC+TGG - chr3_3:59208047-59208066 Msa0461150:intron 30.0%
!! CTTTGGGACATTATAAGAAA+TGG - chr3_3:59208424-59208443 Msa0461150:intron 30.0%
CTTCAAGTAAGACTTCAAAA+AGG + chr3_3:59208469-59208488 None:intergenic 30.0%
!!! CTTTTTGAAGTCTTACTTGA+AGG - chr3_3:59208467-59208486 Msa0461150:intron 30.0%
AATATGATAGATGTTGAGTG+AGG + chr3_3:59208511-59208530 None:intergenic 30.0%
ATGAAACTGCATCATAAGTA+CGG + chr3_3:59208591-59208610 None:intergenic 30.0%
! CTCAAAATGTTTTCAGTAAG+GGG - chr3_3:59208852-59208871 Msa0461150:intron 30.0%
TCGTAAGGAAAAAAAACATG+TGG + chr3_3:59208881-59208900 None:intergenic 30.0%
! GCAATTGGTAATTGTACAAA+AGG + chr3_3:59208920-59208939 None:intergenic 30.0%
GTACAATTACCAATTGCTAA+AGG - chr3_3:59208923-59208942 Msa0461150:intron 30.0%
TGCTTCTTAACAATCACAAA+CGG - chr3_3:59208948-59208967 Msa0461150:intron 30.0%
AAAGAAAAGAGTAGAATGAG+TGG + chr3_3:59209303-59209322 None:intergenic 30.0%
TAGTTCATGGTGAATAATCA+AGG + chr3_3:59209428-59209447 None:intergenic 30.0%
CCACATATTGTAACATGTTA+GGG - chr3_3:59209474-59209493 Msa0461150:intron 30.0%
AAATAATTGTGTGACGCTAT+GGG - chr3_3:59209590-59209609 Msa0461150:CDS 30.0%
TACATTTGAACCGATATTGA+GGG + chr3_3:59209662-59209681 None:intergenic 30.0%
!! TGAACATCGTGAAGTTTTAT+CGG - chr3_3:59209794-59209813 Msa0461150:five_prime_UTR 30.0%
!! GTGGTTTGTGTTTTGTTATG+TGG + chr3_3:59204269-59204288 None:intergenic 35.0%
TTTGTAGGAGTAAGAGATGA+AGG + chr3_3:59204296-59204315 None:intergenic 35.0%
TGAAACTTGAATTCTAACGG+TGG + chr3_3:59204349-59204368 None:intergenic 35.0%
AATACTGAAACCGTTGTTGA+AGG + chr3_3:59204439-59204458 None:intergenic 35.0%
GAAGACATTGATACTCTAAG+GGG + chr3_3:59204465-59204484 None:intergenic 35.0%
CTGAAGACATTGATACTCTA+AGG + chr3_3:59204467-59204486 None:intergenic 35.0%
TTACAGTCTCCAATCTTGTT+AGG + chr3_3:59204540-59204559 None:intergenic 35.0%
ATGTTTAGGAGTAAAGATGG+GGG - chr3_3:59204847-59204866 Msa0461150:CDS 35.0%
GATCGTTTGATTACGCAATT+CGG - chr3_3:59205092-59205111 Msa0461150:intron 35.0%
TCAGGGATATTGTTGTAATC+TGG + chr3_3:59205384-59205403 None:intergenic 35.0%
ATGTATTGAGTACGGTTCAT+AGG + chr3_3:59205547-59205566 None:intergenic 35.0%
! TTACTAGGACTCCTTTTTCT+TGG - chr3_3:59205669-59205688 Msa0461150:CDS 35.0%
ACTCTATGATTCCAATACAG+AGG + chr3_3:59205919-59205938 None:intergenic 35.0%
!!! TTTTTGGTTCAATAGCCTAG+TGG - chr3_3:59205972-59205991 Msa0461150:intron 35.0%
!!! GATCACACACTTTTAAAGTG+TGG - chr3_3:59205998-59206017 Msa0461150:intron 35.0%
!!! ACTTTTAAAGTGTGGAGAAG+TGG - chr3_3:59206006-59206025 Msa0461150:intron 35.0%
!!! CTTTTAAAGTGTGGAGAAGT+GGG - chr3_3:59206007-59206026 Msa0461150:intron 35.0%
!!! TTTTAAAGTGTGGAGAAGTG+GGG - chr3_3:59206008-59206027 Msa0461150:intron 35.0%
TGCCTTAAAATCAGCTGTTT+GGG - chr3_3:59206165-59206184 Msa0461150:intron 35.0%
GGGTAGTTAGGAATTATTAG+AGG - chr3_3:59206374-59206393 Msa0461150:CDS 35.0%
TTGAGTGATTCATCTTTGAG+TGG - chr3_3:59206427-59206446 Msa0461150:intron 35.0%
TGAGTGATTCATCTTTGAGT+GGG - chr3_3:59206428-59206447 Msa0461150:intron 35.0%
AGAAATTGGGGACAATTTCT+TGG - chr3_3:59206468-59206487 Msa0461150:intron 35.0%
!! TGTGGATTTGCTATACATCT+AGG - chr3_3:59206587-59206606 Msa0461150:intron 35.0%
TTTGGTTGATTACTGTTGCT+TGG - chr3_3:59206624-59206643 Msa0461150:intron 35.0%
TTGCTCCACAATTATTGTCT+TGG - chr3_3:59206677-59206696 Msa0461150:intron 35.0%
TCACACCAAGACAATAATTG+TGG + chr3_3:59206685-59206704 None:intergenic 35.0%
CTGCATTTGAGTCTTAAACT+TGG - chr3_3:59206722-59206741 Msa0461150:intron 35.0%
ACGACAATAGAAAACGTTGA+TGG + chr3_3:59206930-59206949 None:intergenic 35.0%
GTAGTAGGGAAAAACATAAC+GGG + chr3_3:59207299-59207318 None:intergenic 35.0%
AAATCTGACATGCAGTAGTA+GGG + chr3_3:59207313-59207332 None:intergenic 35.0%
AAAATCTGACATGCAGTAGT+AGG + chr3_3:59207314-59207333 None:intergenic 35.0%
GTGACATCTGATAGATTCAA+AGG + chr3_3:59207361-59207380 None:intergenic 35.0%
! TCCATGAATGCAATTTTCCT+TGG - chr3_3:59207415-59207434 Msa0461150:intron 35.0%
ACCAAGGAAAATTGCATTCA+TGG + chr3_3:59207419-59207438 None:intergenic 35.0%
! GCAATTTTCCTTGGTCAATT+TGG - chr3_3:59207424-59207443 Msa0461150:intron 35.0%
TTCAAGAACCAAATTGACCA+AGG + chr3_3:59207435-59207454 None:intergenic 35.0%
! GCATGTGATTTTGTCTATAG+TGG - chr3_3:59207678-59207697 Msa0461150:intron 35.0%
TTCCTTGAGGTAATCATTGA+AGG + chr3_3:59207793-59207812 None:intergenic 35.0%
CAAGATTGCAAACAAATAGC+AGG + chr3_3:59207842-59207861 None:intergenic 35.0%
! CTACATCTTTTCCTGCATTA+TGG - chr3_3:59207905-59207924 Msa0461150:intron 35.0%
CCACTACAAGAAAGGTTATA+GGG + chr3_3:59207938-59207957 None:intergenic 35.0%
CCTATAACCTTTCTTGTAGT+GGG - chr3_3:59207936-59207955 Msa0461150:intron 35.0%
TATAAGAGGAACCAGTTAAG+CGG + chr3_3:59207964-59207983 None:intergenic 35.0%
! TTTTCTTGTCTCGATCTTTC+TGG - chr3_3:59208253-59208272 Msa0461150:intron 35.0%
TGTGAAGAAAAAATTCGCAC+AGG + chr3_3:59208325-59208344 None:intergenic 35.0%
!!! TGCGAATTTTTTCTTCACAC+AGG - chr3_3:59208326-59208345 Msa0461150:intron 35.0%
!!! GCGAATTTTTTCTTCACACA+GGG - chr3_3:59208327-59208346 Msa0461150:intron 35.0%
ATGTGTTTCCCATTGACAAA+AGG + chr3_3:59208354-59208373 None:intergenic 35.0%
ATCTCCAAATGGTATAGCTT+TGG + chr3_3:59208402-59208421 None:intergenic 35.0%
ATACCATTTGGAGATTGCTT+TGG - chr3_3:59208407-59208426 Msa0461150:intron 35.0%
TACCATTTGGAGATTGCTTT+GGG - chr3_3:59208408-59208427 Msa0461150:intron 35.0%
TTCAAAAAGGTCAGTGAATC+AGG + chr3_3:59208456-59208475 None:intergenic 35.0%
TGAAACTGCATCATAAGTAC+GGG + chr3_3:59208590-59208609 None:intergenic 35.0%
TCAGAAGAAACTCCAAATTC+AGG + chr3_3:59208714-59208733 None:intergenic 35.0%
CCAAAGCCTCTTTGAATATA+CGG + chr3_3:59208792-59208811 None:intergenic 35.0%
CTTGTGTCATACTATTCGTA+AGG + chr3_3:59208896-59208915 None:intergenic 35.0%
TCTAACAATGCTGAACTTAC+AGG - chr3_3:59209185-59209204 Msa0461150:intron 35.0%
! ACTTACAGGAAATTTTCTCG+AGG - chr3_3:59209199-59209218 Msa0461150:intron 35.0%
! CTTACAGGAAATTTTCTCGA+GGG - chr3_3:59209200-59209219 Msa0461150:intron 35.0%
TATCATCAACCCTCTACTTT+AGG + chr3_3:59209279-59209298 None:intergenic 35.0%
TCATTTGCTTGAGTCTCTTA+AGG - chr3_3:59209322-59209341 Msa0461150:intron 35.0%
ATTGGTATTCAACTCTACAG+TGG + chr3_3:59209388-59209407 None:intergenic 35.0%
AACATGTTACAATATGTGGC+CGG + chr3_3:59209473-59209492 None:intergenic 35.0%
GCCACATATTGTAACATGTT+AGG - chr3_3:59209473-59209492 Msa0461150:intron 35.0%
CCCTAACATGTTACAATATG+TGG + chr3_3:59209477-59209496 None:intergenic 35.0%
TATTGTAACATGTTAGGGAG+AGG - chr3_3:59209479-59209498 Msa0461150:intron 35.0%
GAAATAATTGTGTGACGCTA+TGG - chr3_3:59209589-59209608 Msa0461150:CDS 35.0%
AATAATTGTGTGACGCTATG+GGG - chr3_3:59209591-59209610 Msa0461150:CDS 35.0%
TTTATTAAGACCAAGGTCAG+TGG + chr3_3:59209624-59209643 None:intergenic 35.0%
!! CTGACCTTGGTCTTAATAAA+AGG - chr3_3:59209624-59209643 Msa0461150:CDS 35.0%
GCTTTCTTTACCCTCAATAT+CGG - chr3_3:59209649-59209668 Msa0461150:CDS 35.0%
GTACATTTGAACCGATATTG+AGG + chr3_3:59209663-59209682 None:intergenic 35.0%
AGTAAGAGATGAAGGTGATG+TGG + chr3_3:59204288-59204307 None:intergenic 40.0%
TGAATTCTAACGGTGGACAT+TGG + chr3_3:59204342-59204361 None:intergenic 40.0%
GTTGAAGGAGCTAGTTGAAA+CGG + chr3_3:59204424-59204443 None:intergenic 40.0%
TCAACTAGCTCCTTCAACAA+CGG - chr3_3:59204426-59204445 Msa0461150:three_prime_UTR 40.0%
GCTTTAACAGCAACTTCCAA+TGG + chr3_3:59204504-59204523 None:intergenic 40.0%
CTTACCACTCCTAACAAGAT+TGG - chr3_3:59204528-59204547 Msa0461150:intron 40.0%
GTAGAAAGAATAGGGTAGTG+TGG - chr3_3:59204670-59204689 Msa0461150:three_prime_UTR 40.0%
!! GGGTATCGGTATCATCATAA+GGG + chr3_3:59204984-59205003 None:intergenic 40.0%
!! AGGGTATCGGTATCATCATA+AGG + chr3_3:59204985-59205004 None:intergenic 40.0%
GGTTCATAGGCACAATAAAG+GGG + chr3_3:59205534-59205553 None:intergenic 40.0%
CGGTTCATAGGCACAATAAA+GGG + chr3_3:59205535-59205554 None:intergenic 40.0%
ACGGTTCATAGGCACAATAA+AGG + chr3_3:59205536-59205555 None:intergenic 40.0%
CTCCGATTCAATTGACCATT+TGG + chr3_3:59205579-59205598 None:intergenic 40.0%
TCCAAGTTCAAATTCTGACC+AGG - chr3_3:59205601-59205620 Msa0461150:intron 40.0%
TCCTGGTCAGAATTTGAACT+TGG + chr3_3:59205605-59205624 None:intergenic 40.0%
! GACTCCTTTTTCTTGGAACA+GGG - chr3_3:59205676-59205695 Msa0461150:CDS 40.0%
CTAACCCTGTTCCAAGAAAA+AGG + chr3_3:59205683-59205702 None:intergenic 40.0%
! CTTTTTCTTGGAACAGGGTT+AGG - chr3_3:59205681-59205700 Msa0461150:CDS 40.0%
CAATACAACAGCCTCTGTAT+TGG - chr3_3:59205905-59205924 Msa0461150:intron 40.0%
GTGCCTTAAAATCAGCTGTT+TGG - chr3_3:59206164-59206183 Msa0461150:intron 40.0%
GCCTTAAAATCAGCTGTTTG+GGG - chr3_3:59206166-59206185 Msa0461150:intron 40.0%
!! ACCCCAAACAGCTGATTTTA+AGG + chr3_3:59206170-59206189 None:intergenic 40.0%
AGAGAGGAAAGGAGAGAAAT+TGG - chr3_3:59206454-59206473 Msa0461150:intron 40.0%
GAGAGGAAAGGAGAGAAATT+GGG - chr3_3:59206455-59206474 Msa0461150:intron 40.0%
AGAGGAAAGGAGAGAAATTG+GGG - chr3_3:59206456-59206475 Msa0461150:intron 40.0%
!! TACTGTTGCTTGGACTGTTT+TGG - chr3_3:59206634-59206653 Msa0461150:intron 40.0%
GCAACACTCTTTGGCTAAAA+GGG + chr3_3:59206802-59206821 None:intergenic 40.0%
AGCAACACTCTTTGGCTAAA+AGG + chr3_3:59206803-59206822 None:intergenic 40.0%
ACCTTATGAGCCAAAATTGG+TGG - chr3_3:59206844-59206863 Msa0461150:intron 40.0%
!!! TCCACCAATTTTGGCTCATA+AGG + chr3_3:59206848-59206867 None:intergenic 40.0%
!! TAGAAAACGTTGATGGCTTG+TGG + chr3_3:59206923-59206942 None:intergenic 40.0%
TTCCTTGAAATCAGTCCTGA+AGG - chr3_3:59206992-59207011 Msa0461150:CDS 40.0%
! TACCTTCAGGACTGATTTCA+AGG + chr3_3:59206997-59207016 None:intergenic 40.0%
ATTACGGGAACTTTACCTTC+AGG + chr3_3:59207010-59207029 None:intergenic 40.0%
TTTGAGAACCAGACTGACTA+AGG + chr3_3:59207467-59207486 None:intergenic 40.0%
GCTAACGAAAGAAACTCACA+TGG - chr3_3:59207522-59207541 Msa0461150:intron 40.0%
TGACACCGTATGACACAATT+AGG - chr3_3:59207584-59207603 Msa0461150:intron 40.0%
GACACCGTATGACACAATTA+GGG - chr3_3:59207585-59207604 Msa0461150:intron 40.0%
TGGTCCCTAATTGTGTCATA+CGG + chr3_3:59207592-59207611 None:intergenic 40.0%
AAGAGCAAAGATCCCAATGA+TGG - chr3_3:59207735-59207754 Msa0461150:intron 40.0%
CTCCTTCAATGATTACCTCA+AGG - chr3_3:59207788-59207807 Msa0461150:intron 40.0%
! CTTTTCCTGCATTATGGTCA+TGG - chr3_3:59207911-59207930 Msa0461150:intron 40.0%
CCCTATAACCTTTCTTGTAG+TGG - chr3_3:59207935-59207954 Msa0461150:intron 40.0%
CCCACTACAAGAAAGGTTAT+AGG + chr3_3:59207939-59207958 None:intergenic 40.0%
CAATGGGAAACACATATCTG+CGG - chr3_3:59208359-59208378 Msa0461150:intron 40.0%
!! ATAGCTTTGGTCCTAGTGAT+AGG + chr3_3:59208389-59208408 None:intergenic 40.0%
AGGACCAAAGCTATACCATT+TGG - chr3_3:59208395-59208414 Msa0461150:intron 40.0%
ATGATAGATGTTGAGTGAGG+AGG + chr3_3:59208508-59208527 None:intergenic 40.0%
TGTCCATGCTTAAAGATCAC+AGG - chr3_3:59208655-59208674 Msa0461150:intron 40.0%
TAGCCTGTGATCTTTAAGCA+TGG + chr3_3:59208661-59208680 None:intergenic 40.0%
TCAATAGGGAGACCTGAATT+TGG - chr3_3:59208699-59208718 Msa0461150:intron 40.0%
!! AAATTGGTTTGCAAAGCCCA+AGG + chr3_3:59208767-59208786 None:intergenic 40.0%
CCGTATATTCAAAGAGGCTT+TGG - chr3_3:59208789-59208808 Msa0461150:intron 40.0%
!! AGAAGCACTCCTTTAGCAAT+TGG + chr3_3:59208935-59208954 None:intergenic 40.0%
GACAACAATTGGTGAAAAGG+AGG + chr3_3:59209059-59209078 None:intergenic 40.0%
GCTGACAACAATTGGTGAAA+AGG + chr3_3:59209062-59209081 None:intergenic 40.0%
GACAACAAGCTGACAACAAT+TGG + chr3_3:59209070-59209089 None:intergenic 40.0%
ACAGATCATCTAGGGATTGT+GGG + chr3_3:59209092-59209111 None:intergenic 40.0%
AACAGATCATCTAGGGATTG+TGG + chr3_3:59209093-59209112 None:intergenic 40.0%
CACAGACAACAGATCATCTA+GGG + chr3_3:59209100-59209119 None:intergenic 40.0%
ACACAGACAACAGATCATCT+AGG + chr3_3:59209101-59209120 None:intergenic 40.0%
! TATAGGGCAGCACTAGTTTA+AGG + chr3_3:59209566-59209585 None:intergenic 40.0%
! GCTGCCTTTTATTAAGACCA+AGG + chr3_3:59209631-59209650 None:intergenic 40.0%
GCGTGCGTTTGTTTGTTTGT+AGG + chr3_3:59204311-59204330 None:intergenic 45.0%
ACGGTAACGAAGGTGGTTAA+CGG + chr3_3:59204391-59204410 None:intergenic 45.0%
GTCTCCAATCTTGTTAGGAG+TGG + chr3_3:59204535-59204554 None:intergenic 45.0%
GCATGGACACTTCTGATTGA+AGG - chr3_3:59204709-59204728 Msa0461150:three_prime_UTR 45.0%
AACACGACACATGTCGGATA+AGG + chr3_3:59204740-59204759 None:intergenic 45.0%
TATGAAGCACGACACAGACA+CGG + chr3_3:59204817-59204836 None:intergenic 45.0%
AAATCCTACCCTTGGGTAGA+GGG + chr3_3:59205004-59205023 None:intergenic 45.0%
ACTCTGTAGTCTAGTCAGAG+AGG + chr3_3:59205134-59205153 None:intergenic 45.0%
ATATCCCTGAAACGTACCAC+AGG - chr3_3:59205394-59205413 Msa0461150:intron 45.0%
TATCCCTGAAACGTACCACA+GGG - chr3_3:59205395-59205414 Msa0461150:intron 45.0%
GTTTGGCCAAATGCAAGGAA+GGG - chr3_3:59205467-59205486 Msa0461150:intron 45.0%
CTTTCACCCTTCCTTGCATT+TGG + chr3_3:59205476-59205495 None:intergenic 45.0%
CAAATGCAAGGAAGGGTGAA+AGG - chr3_3:59205474-59205493 Msa0461150:intron 45.0%
TAGGCACAATAAAGGGGCAA+GGG + chr3_3:59205528-59205547 None:intergenic 45.0%
ATAGGCACAATAAAGGGGCA+AGG + chr3_3:59205529-59205548 None:intergenic 45.0%
AGTCTGGTCAAGAAATGTCC+TGG + chr3_3:59205622-59205641 None:intergenic 45.0%
ATCAGGAGGTCAGTAAAGTC+TGG + chr3_3:59205638-59205657 None:intergenic 45.0%
! GGACTCCTTTTTCTTGGAAC+AGG - chr3_3:59205675-59205694 Msa0461150:CDS 45.0%
AAGTGTGTGATCTAGCCACT+AGG + chr3_3:59205990-59206009 None:intergenic 45.0%
TACCAGGGACAATGTTTGCA+GGG + chr3_3:59206056-59206075 None:intergenic 45.0%
ACCAACTGAGCTACACTTAC+TGG - chr3_3:59206079-59206098 Msa0461150:intron 45.0%
TCCAGTAAGTGTAGCTCAGT+TGG + chr3_3:59206083-59206102 None:intergenic 45.0%
! AATCAGCTGTTTGGGGTTTC+TGG - chr3_3:59206173-59206192 Msa0461150:intron 45.0%
TAACCTAGAGAGAGGGAACA+CGG - chr3_3:59206299-59206318 Msa0461150:CDS 45.0%
AGGGAACACGGAAAAACCTA+GGG - chr3_3:59206311-59206330 Msa0461150:CDS 45.0%
!! TTCGAGTGTTGAGAGCTCTT+GGG - chr3_3:59206334-59206353 Msa0461150:CDS 45.0%
!! ATCTTTGAGTGGGTTGAGAG+AGG - chr3_3:59206438-59206457 Msa0461150:intron 45.0%
CCAAATTGACCTACTTCTGG+GGG + chr3_3:59206499-59206518 None:intergenic 45.0%
CCCAAATTGACCTACTTCTG+GGG + chr3_3:59206500-59206519 None:intergenic 45.0%
CCCCAGAAGTAGGTCAATTT+GGG - chr3_3:59206497-59206516 Msa0461150:intron 45.0%
GCCCAAATTGACCTACTTCT+GGG + chr3_3:59206501-59206520 None:intergenic 45.0%
AAGACTTTGTTCGCCCAGTT+CGG + chr3_3:59206523-59206542 None:intergenic 45.0%
!!! GCTTGGACTGTTTTGGTTGT+TGG - chr3_3:59206641-59206660 Msa0461150:intron 45.0%
GGACAAGAAGATCACCATTC+TGG + chr3_3:59206884-59206903 None:intergenic 45.0%
TGTGGTCGGTAAGTGAAACA+TGG + chr3_3:59206905-59206924 None:intergenic 45.0%
!! AAACGTTGATGGCTTGTGGT+CGG + chr3_3:59206919-59206938 None:intergenic 45.0%
!!! TTTTCAGGTGGTGTCACCAA+TGG + chr3_3:59207106-59207125 None:intergenic 45.0%
! ATTGGTGACACCACCTGAAA+AGG - chr3_3:59207105-59207124 Msa0461150:intron 45.0%
! TCCCAATGATGGAACAGAAC+AGG - chr3_3:59207746-59207765 Msa0461150:intron 45.0%
GCCTGTTCTGTTCCATCATT+GGG + chr3_3:59207750-59207769 None:intergenic 45.0%
TGCCTGTTCTGTTCCATCAT+TGG + chr3_3:59207751-59207770 None:intergenic 45.0%
TGCAAACAAATAGCAGGGAG+AGG + chr3_3:59207836-59207855 None:intergenic 45.0%
ATGCAGGAAAAGATGTAGCC+AGG + chr3_3:59207903-59207922 None:intergenic 45.0%
! ACACAGGGTCCTTTTGTCAA+TGG - chr3_3:59208342-59208361 Msa0461150:intron 45.0%
! CACAGGGTCCTTTTGTCAAT+GGG - chr3_3:59208343-59208362 Msa0461150:intron 45.0%
GTCCCAAAGCAATCTCCAAA+TGG + chr3_3:59208413-59208432 None:intergenic 45.0%
! ATGTTTTCGGTCATGTGCCT+TGG - chr3_3:59208747-59208766 Msa0461150:intron 45.0%
! TGTTTTCGGTCATGTGCCTT+GGG - chr3_3:59208748-59208767 Msa0461150:intron 45.0%
!! TTCAAAGAGGCTTTGGCTCT+AGG - chr3_3:59208796-59208815 Msa0461150:intron 45.0%
TGCTCTACATGAAGCCTTCA+TGG + chr3_3:59209505-59209524 None:intergenic 45.0%
GTAACGAAGGTGGTTAACGG+TGG + chr3_3:59204388-59204407 None:intergenic 50.0%
TTGAAACGGCGTAGCTTGGA+CGG + chr3_3:59204410-59204429 None:intergenic 50.0%
CTAGTTGAAACGGCGTAGCT+TGG + chr3_3:59204414-59204433 None:intergenic 50.0%
AGTTCCTCCTTCTGAGCCAT+TGG - chr3_3:59204485-59204504 Msa0461150:intron 50.0%
ACTTCCAATGGCTCAGAAGG+AGG + chr3_3:59204492-59204511 None:intergenic 50.0%
GCAACTTCCAATGGCTCAGA+AGG + chr3_3:59204495-59204514 None:intergenic 50.0%
GTGTCGAACACGACACATGT+CGG + chr3_3:59204746-59204765 None:intergenic 50.0%
ATACCGATACCCTCTACCCA+AGG - chr3_3:59204992-59205011 Msa0461150:intron 50.0%
TACCGATACCCTCTACCCAA+GGG - chr3_3:59204993-59205012 Msa0461150:intron 50.0%
! TACCCTTGGGTAGAGGGTAT+CGG + chr3_3:59204998-59205017 None:intergenic 50.0%
CAAATCCTACCCTTGGGTAG+AGG + chr3_3:59205005-59205024 None:intergenic 50.0%
TTTGTTGCAGGGAGCGACTA+GGG + chr3_3:59205429-59205448 None:intergenic 50.0%
! AAGCCCGACTGTTTGTTGCA+GGG + chr3_3:59205440-59205459 None:intergenic 50.0%
! TAAGCCCGACTGTTTGTTGC+AGG + chr3_3:59205441-59205460 None:intergenic 50.0%
CGTTTGGCCAAATGCAAGGA+AGG - chr3_3:59205466-59205485 Msa0461150:intron 50.0%
ACCAGGGACAATGTTTGCAG+GGG + chr3_3:59206055-59206074 None:intergenic 50.0%
CTACCAGGGACAATGTTTGC+AGG + chr3_3:59206057-59206076 None:intergenic 50.0%
!! AGCTCAGTTGGTAGCTACCA+GGG + chr3_3:59206071-59206090 None:intergenic 50.0%
!! TAGCTCAGTTGGTAGCTACC+AGG + chr3_3:59206072-59206091 None:intergenic 50.0%
TTTCCGTGTTCCCTCTCTCT+AGG + chr3_3:59206305-59206324 None:intergenic 50.0%
GAGGGAACACGGAAAAACCT+AGG - chr3_3:59206310-59206329 Msa0461150:CDS 50.0%
!! GTTCGAGTGTTGAGAGCTCT+TGG - chr3_3:59206333-59206352 Msa0461150:CDS 50.0%
!! TTCTAGGGCCTTGGGTAGTT+AGG - chr3_3:59206362-59206381 Msa0461150:CDS 50.0%
!! TGAGTGGGTTGAGAGAGGAA+AGG - chr3_3:59206443-59206462 Msa0461150:intron 50.0%
CCCCCAGAAGTAGGTCAATT+TGG - chr3_3:59206496-59206515 Msa0461150:intron 50.0%
GGCCCAAATTGACCTACTTC+TGG + chr3_3:59206502-59206521 None:intergenic 50.0%
TAGGTCAATTTGGGCCGAAC+TGG - chr3_3:59206506-59206525 Msa0461150:intron 50.0%
AGGTCAATTTGGGCCGAACT+GGG - chr3_3:59206507-59206526 Msa0461150:intron 50.0%
CCAGTGTCAGCAACACTCTT+TGG + chr3_3:59206811-59206830 None:intergenic 50.0%
!! CCAAAGAGTGTTGCTGACAC+TGG - chr3_3:59206808-59206827 Msa0461150:intron 50.0%
!! AAGAGTGTTGCTGACACTGG+AGG - chr3_3:59206811-59206830 Msa0461150:intron 50.0%
! GAAGTATCCTAGCCCACCAT+TGG - chr3_3:59207087-59207106 Msa0461150:CDS 50.0%
!! TACGCTGTAGCCTTTTCAGG+TGG + chr3_3:59207118-59207137 None:intergenic 50.0%
! GCATACGCTGTAGCCTTTTC+AGG + chr3_3:59207121-59207140 None:intergenic 50.0%
AAGGCTACAGCGTATGCTTC+TGG - chr3_3:59207124-59207143 Msa0461150:intron 50.0%
GTATCTCGCCTTAGTCAGTC+TGG - chr3_3:59207456-59207475 Msa0461150:intron 50.0%
AGGTCTCTCAATCTCTGACC+TGG - chr3_3:59207882-59207901 Msa0461150:intron 50.0%
AGGGTCCATGACCATAATGC+AGG + chr3_3:59207919-59207938 None:intergenic 50.0%
CATTAACACACGTGCACAGC+CGG - chr3_3:59209230-59209249 Msa0461150:intron 50.0%
AGGTTGGCGTCCTAAAGTAG+AGG - chr3_3:59209266-59209285 Msa0461150:intron 50.0%
GGTTGGCGTCCTAAAGTAGA+GGG - chr3_3:59209267-59209286 Msa0461150:intron 50.0%
ATGTTAGGGAGAGGCCATGA+AGG - chr3_3:59209488-59209507 Msa0461150:intron 50.0%
ACGAAGGTGGTTAACGGTGG+CGG + chr3_3:59204385-59204404 None:intergenic 55.0%
AGCTTGGACGGTAACGAAGG+TGG + chr3_3:59204398-59204417 None:intergenic 55.0%
CGTAGCTTGGACGGTAACGA+AGG + chr3_3:59204401-59204420 None:intergenic 55.0%
GATACCCTCTACCCAAGGGT+AGG - chr3_3:59204997-59205016 Msa0461150:intron 55.0%
! GTTTGTTGCAGGGAGCGACT+AGG + chr3_3:59205430-59205449 None:intergenic 55.0%
CGCTCCCTGCAACAAACAGT+CGG - chr3_3:59205433-59205452 Msa0461150:intron 55.0%
GCTCCCTGCAACAAACAGTC+GGG - chr3_3:59205434-59205453 Msa0461150:intron 55.0%
AGTCGGGCTTAACGCACGTT+TGG - chr3_3:59205450-59205469 Msa0461150:intron 55.0%
CGCACGTTTGGCCAAATGCA+AGG - chr3_3:59205462-59205481 Msa0461150:intron 55.0%
GTGTGGAGAAGTGGGGAATC+CGG - chr3_3:59206015-59206034 Msa0461150:intron 55.0%
TGTGGAGAAGTGGGGAATCC+GGG - chr3_3:59206016-59206035 Msa0461150:intron 55.0%
GACAATGTTTGCAGGGGACG+GGG + chr3_3:59206049-59206068 None:intergenic 55.0%
GGACAATGTTTGCAGGGGAC+GGG + chr3_3:59206050-59206069 None:intergenic 55.0%
GGGACAATGTTTGCAGGGGA+CGG + chr3_3:59206051-59206070 None:intergenic 55.0%
TCCCCTGCAAACATTGTCCC+TGG - chr3_3:59206051-59206070 Msa0461150:intron 55.0%
! CAGCTGTTTGGGGTTTCTGG+TGG - chr3_3:59206176-59206195 Msa0461150:intron 55.0%
GCTCTCAACACTCGAACCCT+AGG + chr3_3:59206330-59206349 None:intergenic 55.0%
AGCTCTTGGGCGAGGTTCTA+GGG - chr3_3:59206347-59206366 Msa0461150:CDS 55.0%
TTGGTCACTCCCCCAGAAGT+AGG - chr3_3:59206487-59206506 Msa0461150:intron 55.0%
!! CAGGTGGTGTCACCAATGGT+GGG + chr3_3:59207102-59207121 None:intergenic 55.0%
!! TCAGGTGGTGTCACCAATGG+TGG + chr3_3:59207103-59207122 None:intergenic 55.0%
AGCGGTGCCCACTACAAGAA+AGG + chr3_3:59207946-59207965 None:intergenic 55.0%
!! TGTAGTGGGCACCGCTTAAC+TGG - chr3_3:59207950-59207969 Msa0461150:intron 55.0%
TCTGCGGCTGACCTATCACT+AGG - chr3_3:59208375-59208394 Msa0461150:intron 55.0%
GGGCCCTGTGGTACGTTTCA+GGG + chr3_3:59205401-59205420 None:intergenic 60.0%
GTGGAGAAGTGGGGAATCCG+GGG - chr3_3:59206017-59206036 Msa0461150:intron 60.0%
GTGTTGAGAGCTCTTGGGCG+AGG - chr3_3:59206339-59206358 Msa0461150:CDS 60.0%
GAGCTCTTGGGCGAGGTTCT+AGG - chr3_3:59206346-59206365 Msa0461150:CDS 60.0%
!! GGTGTCACCAATGGTGGGCT+AGG + chr3_3:59207097-59207116 None:intergenic 60.0%
TAACACACGTGCACAGCCGG+AGG - chr3_3:59209233-59209252 Msa0461150:intron 60.0%
! GGGTGATGTGCCACTGACCT+TGG - chr3_3:59209611-59209630 Msa0461150:CDS 60.0%
GGGGCCCTGTGGTACGTTTC+AGG + chr3_3:59205402-59205421 None:intergenic 65.0%
AGGGAGCGACTAGGGTGCAG+GGG + chr3_3:59205421-59205440 None:intergenic 65.0%
CAGGGAGCGACTAGGGTGCA+GGG + chr3_3:59205422-59205441 None:intergenic 65.0%
!! TGGGCGAGGTTCTAGGGCCT+TGG - chr3_3:59206353-59206372 Msa0461150:CDS 65.0%
!! GGGCGAGGTTCTAGGGCCTT+GGG - chr3_3:59206354-59206373 Msa0461150:CDS 65.0%
ACTAGGGTGCAGGGGCCCTG+TGG + chr3_3:59205413-59205432 None:intergenic 70.0%
GCAGGGAGCGACTAGGGTGC+AGG + chr3_3:59205423-59205442 None:intergenic 70.0%
AGGGGACGGGGTTCGAACCC+CGG + chr3_3:59206037-59206056 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr3_3 gene 59204257 59209848 59204257 ID=Msa0461150;Name=Msa0461150
chr3_3 mRNA 59204257 59209848 59204257 ID=Msa0461150-mRNA-1;Parent=Msa0461150;Name=Msa0461150-mRNA-1;_AED=0.08;_eAED=0.08;_QI=85|1|1|1|0.66|0.71|7|518|264
chr3_3 exon 59204257 59204495 59204257 ID=Msa0461150-mRNA-1:exon:12308;Parent=Msa0461150-mRNA-1
chr3_3 exon 59204533 59204898 59204533 ID=Msa0461150-mRNA-1:exon:12307;Parent=Msa0461150-mRNA-1
chr3_3 exon 59205617 59205757 59205617 ID=Msa0461150-mRNA-1:exon:12306;Parent=Msa0461150-mRNA-1
chr3_3 exon 59206290 59206407 59206290 ID=Msa0461150-mRNA-1:exon:12305;Parent=Msa0461150-mRNA-1
chr3_3 exon 59206971 59207114 59206971 ID=Msa0461150-mRNA-1:exon:12304;Parent=Msa0461150-mRNA-1
chr3_3 exon 59207217 59207307 59207217 ID=Msa0461150-mRNA-1:exon:12303;Parent=Msa0461150-mRNA-1
chr3_3 exon 59209550 59209848 59209550 ID=Msa0461150-mRNA-1:exon:12302;Parent=Msa0461150-mRNA-1
chr3_3 five_prime_UTR 59209764 59209848 59209764 ID=Msa0461150-mRNA-1:five_prime_utr;Parent=Msa0461150-mRNA-1
chr3_3 CDS 59209550 59209763 59209550 ID=Msa0461150-mRNA-1:cds;Parent=Msa0461150-mRNA-1
chr3_3 CDS 59207217 59207307 59207217 ID=Msa0461150-mRNA-1:cds;Parent=Msa0461150-mRNA-1
chr3_3 CDS 59206971 59207114 59206971 ID=Msa0461150-mRNA-1:cds;Parent=Msa0461150-mRNA-1
chr3_3 CDS 59206290 59206407 59206290 ID=Msa0461150-mRNA-1:cds;Parent=Msa0461150-mRNA-1
chr3_3 CDS 59205617 59205757 59205617 ID=Msa0461150-mRNA-1:cds;Parent=Msa0461150-mRNA-1
chr3_3 CDS 59204812 59204898 59204812 ID=Msa0461150-mRNA-1:cds;Parent=Msa0461150-mRNA-1
chr3_3 three_prime_UTR 59204533 59204811 59204533 ID=Msa0461150-mRNA-1:three_prime_utr;Parent=Msa0461150-mRNA-1
chr3_3 three_prime_UTR 59204257 59204495 59204257 ID=Msa0461150-mRNA-1:three_prime_utr;Parent=Msa0461150-mRNA-1
Gene Sequence

>Msa0461150

ATGTCCACCGTTAGAATTCAAGTTTCAGCATGCGCTCTTTCCGCCACCGTTAACCACCTTCGTTACCGTCCAAGCTACGCCGTTTCAACTAGCTCCTTCAACAACGGTTTCAGTATTAAACCCCTTAGAGTATCAATGTCTTCAGTTCCTCCTTCTGAGCCATTGGAAGTTGCTGTTAAAGCTTCTCTTACCACTCCTAACAAGATTGGAGACTGCCCTTTTAGCCAAAGAGTGTTGCTGACACTGGAGGAAAAACATTTACCTTATGAGCCAAAATTGGTGGATTTAAGAAACAAACCAGAATGGTTCCTTGAAATCAGTCCTGAAGGTAAAGTTCCCGTAATAAATTTTGATGGAAAGTGGGTTGCTGATTCAGATTTAATCACACAAACATTGGAAGAGAAGTATCCTAGCCCACCATTGGTGACACCACCTGAAAAGGCTACAGCTGGGTCAAAGATCTTCTCTACATTTATTGGATTTCTCAAGAGCAAAGATCCCAATGATGGAACAGAACAGGCATTGCTAAATGAACTTAGCTCCTTCAATGATTACCTCAAGGAAAATGGTCCTTTTGTCAATGGGAAACACATATCTGCGGCTGACCTATCACTAGGACCAAAGCTATACCATTTGGAGATTGCTTTGGGACATTATAAGAAATGGACAGTACCTGATTCACTGACCTTTTTGAAGTCTTACTTGAAGGAAATTTTCTCGAGGGAATCATTCATTAACACACGTGCACAGCCGGAGGATGTCATTGAAGGTTGGCGTCCTAAAGTAGAGGGTTGA

Protein sequence

>Msa0461150

MSTVRIQVSACALSATVNHLRYRPSYAVSTSSFNNGFSIKPLRVSMSSVPPSEPLEVAVKASLTTPNKIGDCPFSQRVLLTLEEKHLPYEPKLVDLRNKPEWFLEISPEGKVPVINFDGKWVADSDLITQTLEEKYPSPPLVTPPEKATAGSKIFSTFIGFLKSKDPNDGTEQALLNELSSFNDYLKENGPFVNGKHISAADLSLGPKLYHLEIALGHYKKWTVPDSLTFLKSYLKEIFSRESFINTRAQPEDVIEGWRPKVEG*