AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1266750


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1266750 MtrunA17_Chr4g0070091 97.297 222 5 1 1 222 1 221 7.80e-157 433
Msa1266750 MtrunA17_Chr7g0267151 30.052 193 113 6 51 222 38 229 2.92e-15 72.8
Msa1266750 MtrunA17_Chr1g0177361 31.410 156 95 4 78 222 77 231 7.36e-15 71.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1266750 AT3G26060.1 78.771 179 35 1 43 221 40 215 1.50e-99 288
Msa1266750 AT3G26060.2 78.333 180 35 2 43 221 40 216 1.19e-97 283
Msa1266750 AT3G26060.3 85.135 148 22 0 74 221 6 153 1.64e-94 273
Msa1266750 AT5G06290.2 34.177 158 88 5 78 222 83 237 4.14e-18 80.5
Msa1266750 AT5G06290.1 35.256 156 89 4 78 222 83 237 5.72e-18 80.5
Msa1266750 AT3G11630.1 33.974 156 91 4 78 222 76 230 6.79e-17 77.4

Find 82 sgRNAs with CRISPR-Local

Find 190 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTTGAGTTGGGGTGAGAATT+TGG 0.222433 8_2:+71735830 Msa1266750:five_prime_UTR
TCATCACTCAACAAGGTAAA+TGG 0.285138 8_2:-71737883 None:intergenic
AAGGGATACGGAAGCATTAA+AGG 0.286619 8_2:-71738071 None:intergenic
CACAGGTTTCCCTTTGTACT+TGG 0.303836 8_2:-71736371 None:intergenic
GGAGTGCCTGGCGATTTCTT+TGG 0.309530 8_2:+71737931 Msa1266750:CDS
AAATGGAAGCTTGTACTTCT+TGG 0.312396 8_2:-71737866 None:intergenic
CTTAATTACTAGGTTGAGTT+GGG 0.323258 8_2:+71735818 Msa1266750:five_prime_UTR
TACGGAAGCATTAAAGGCTT+TGG 0.346601 8_2:-71738065 None:intergenic
GATTTCTTTGGATCATTGCC+TGG 0.346798 8_2:+71737943 Msa1266750:CDS
AATTGGTAGGGAGAGTGATC+AGG 0.347523 8_2:-71736038 None:intergenic
ATAGTTACATACTTGAATTA+AGG 0.359749 8_2:-71738097 None:intergenic
GCAGAGGTTGTTGGGATAAG+TGG 0.361226 8_2:+71737744 Msa1266750:CDS
CTCTTCATCTTCCATGGCTA+AGG 0.389484 8_2:+71736011 Msa1266750:CDS
GACTCACTGTCTTGCCATCC+TGG 0.400499 8_2:-71736345 None:intergenic
CATACTTGAATTAAGGCAAA+AGG 0.409250 8_2:-71738090 None:intergenic
CTTACCTGTTTGGTACAGCC+AGG 0.410343 8_2:-71736424 None:intergenic
AAGCAGGAGCAGAGGTTGTT+GGG 0.412350 8_2:+71737736 Msa1266750:CDS
AGGTGTAGAAGAAGTGGTTT+TGG 0.413165 8_2:-71736163 None:intergenic
GAAAGCCAATCTTGTTTCGC+TGG 0.439618 8_2:+71735861 Msa1266750:five_prime_UTR
AGAGTTACAACTTAATTACT+AGG 0.440665 8_2:+71735808 None:intergenic
CAGCCAGGGGTCTCATCAGC+AGG 0.442678 8_2:-71736409 None:intergenic
AAGGCTTTGGAGTAGTTTCA+AGG 0.453537 8_2:-71738052 None:intergenic
ACTTTGCTCTTCATCTTCCA+TGG 0.463410 8_2:+71736005 Msa1266750:CDS
AATAAATGTGGGGAAAGAAT+TGG 0.464668 8_2:-71736055 None:intergenic
AGGAAAGAGTGGGGAGTGCC+TGG 0.465381 8_2:+71737919 Msa1266750:CDS
AGAGGGAAAGTGTATACATT+GGG 0.465820 8_2:-71735911 None:intergenic
AAAGCAGGAGCAGAGGTTGT+TGG 0.469493 8_2:+71737735 Msa1266750:CDS
TACCCTGCTGATGAGACCCC+TGG 0.472668 8_2:+71736406 Msa1266750:CDS
ATTGGTAGGGAGAGTGATCA+GGG 0.476674 8_2:-71736037 None:intergenic
ACACCTTCTTCATTCAAAAG+AGG 0.479717 8_2:+71736180 Msa1266750:CDS
GACCCCTGGCTGTACCAAAC+AGG 0.480415 8_2:+71736420 Msa1266750:CDS
ACTTAATTACTAGGTTGAGT+TGG 0.489845 8_2:+71735817 None:intergenic
TGAAGCCAGCGAAACAAGAT+TGG 0.493039 8_2:-71735866 None:intergenic
TTACCTGTTTGGTACAGCCA+GGG 0.504190 8_2:-71736423 None:intergenic
TATGAGAAGTTCAAGAAAGC+AGG 0.505377 8_2:+71737720 Msa1266750:CDS
TCTCTATCTACCACCCCAAA+AGG 0.515636 8_2:+71735954 Msa1266750:five_prime_UTR
ACAGTGTTTGTGATAATTGA+AGG 0.520796 8_2:-71738247 None:intergenic
ATACTTGAATTAAGGCAAAA+GGG 0.521615 8_2:-71738089 None:intergenic
GATAGATTATGATATGAGAG+AGG 0.526572 8_2:-71735929 None:intergenic
TGAGTCTCTCCAAGTACAAA+GGG 0.527088 8_2:+71736362 Msa1266750:CDS
TTTACCTTGTTGAGTGATGA+GGG 0.533791 8_2:+71737886 Msa1266750:CDS
ATTTACCTTGTTGAGTGATG+AGG 0.534596 8_2:+71737885 Msa1266750:CDS
GAATTAAGGCAAAAGGGATA+CGG 0.536094 8_2:-71738083 None:intergenic
TGAAGAAGGTGTAGAAGAAG+TGG 0.541255 8_2:-71736169 None:intergenic
ACAAGATTGGCTTTCTTGCG+TGG 0.542220 8_2:-71735853 None:intergenic
AATGATCCAAAGAAATCGCC+AGG 0.551351 8_2:-71737937 None:intergenic
GCAAATGAGCAGGTGAGTAA+AGG 0.552307 8_2:+71736292 Msa1266750:intron
ATTTCTTTGGATCATTGCCT+GGG 0.553738 8_2:+71737944 Msa1266750:CDS
TGGTCTTTCAACGTGAAAGC+CGG 0.553851 8_2:-71736325 None:intergenic
TAACAAGGTAAGGAAAGAGT+GGG 0.554128 8_2:+71737909 Msa1266750:CDS
GGCTTTCACGTTGAAAGACC+AGG 0.554297 8_2:+71736327 Msa1266750:CDS
GAGAGGGAAAGTGTATACAT+TGG 0.554364 8_2:-71735912 None:intergenic
TATACATTGGGTTGAGTGGG+TGG 0.556458 8_2:-71735899 None:intergenic
ATAGATTATGATATGAGAGA+GGG 0.563899 8_2:-71735928 None:intergenic
AGTGTATACATTGGGTTGAG+TGG 0.565184 8_2:-71735903 None:intergenic
GTTCAAGAAAGCAGGAGCAG+AGG 0.567377 8_2:+71737728 Msa1266750:CDS
ATATGAATCCCTAAAAGCGC+AGG 0.567632 8_2:-71737700 None:intergenic
GTGATGAGGGTAACAAGGTA+AGG 0.567983 8_2:+71737899 Msa1266750:CDS
ATGTGGGGAAAGAATTGGTA+GGG 0.570965 8_2:-71736050 None:intergenic
TACCTGTTTGGTACAGCCAG+GGG 0.571231 8_2:-71736422 None:intergenic
GAGTAAAGGTTCAAAGCCAC+CGG 0.580619 8_2:+71736306 Msa1266750:CDS
TGTTTGATCTCTATATGAGA+AGG 0.582902 8_2:-71738196 None:intergenic
TCTTTCAACGTGAAAGCCGG+TGG 0.591762 8_2:-71736322 None:intergenic
GTGTATACATTGGGTTGAGT+GGG 0.592798 8_2:-71735902 None:intergenic
GTAACAAGGTAAGGAAAGAG+TGG 0.594096 8_2:+71737908 Msa1266750:CDS
AATCAGCTACTTAATTACAA+TGG 0.604161 8_2:-71738133 None:intergenic
GTGAGTCTCTCCAAGTACAA+AGG 0.604417 8_2:+71736361 Msa1266750:CDS
GGGTAGAAATAAACAACCAC+AGG 0.604779 8_2:-71736388 None:intergenic
GATCAGGGAAACCTTAGCCA+TGG 0.605970 8_2:-71736022 None:intergenic
AGAACATAAGTCTCTCTCCC+AGG 0.610669 8_2:-71737961 None:intergenic
TTAATTACTAGGTTGAGTTG+GGG 0.611650 8_2:+71735819 Msa1266750:five_prime_UTR
TGGAAGAATGGGATAACTTG+AGG 0.612538 8_2:-71736137 None:intergenic
ACAATTATAATGTCTCGCGA+TGG 0.616434 8_2:+71738216 Msa1266750:three_prime_UTR
AATGTGGGGAAAGAATTGGT+AGG 0.616864 8_2:-71736051 None:intergenic
GTTGAGTGATGAGGGTAACA+AGG 0.618582 8_2:+71737894 Msa1266750:CDS
AACAAGGTAAGGAAAGAGTG+GGG 0.648925 8_2:+71737910 Msa1266750:CDS
AGACGATTCTTCCTCTCACA+AGG 0.659575 8_2:+71737767 Msa1266750:CDS
AGCCAGGGGTCTCATCAGCA+GGG 0.668167 8_2:-71736408 None:intergenic
GTTACCCTCATCACTCAACA+AGG 0.674521 8_2:-71737890 None:intergenic
TTCACGTTGAAAGACCAGGA+TGG 0.687451 8_2:+71736331 Msa1266750:CDS
CAAGTACAAAGGGAAACCTG+TGG 0.709350 8_2:+71736372 Msa1266750:CDS
TTTGAGGGTGAATAAATGTG+GGG 0.731556 8_2:-71736065 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAAGTTTATAATCCATAAA+TGG + chr8_2:71736488-71736507 Msa1266750:intron 15.0%
!! AAAAAATTGTTTACCTAAAT+AGG + chr8_2:71737231-71737250 Msa1266750:intron 15.0%
!! AATAATCAGTAGATAAATAT+TGG - chr8_2:71737526-71737545 None:intergenic 15.0%
!!! TTTTATGAATTTATTATTGC+AGG + chr8_2:71737677-71737696 Msa1266750:intron 15.0%
!!! TCATAACTACTTTTTGTAAT+AGG + chr8_2:71736803-71736822 Msa1266750:intron 20.0%
!!! TGATATAATTGATTCCAATA+TGG + chr8_2:71737593-71737612 Msa1266750:intron 20.0%
!! ATAGTTACATACTTGAATTA+AGG - chr8_2:71738100-71738119 None:intergenic 20.0%
! ATAGATTATGATATGAGAGA+GGG - chr8_2:71735931-71735950 None:intergenic 25.0%
!! TTACGTTTTCTTTTCCTTTT+GGG - chr8_2:71735971-71735990 None:intergenic 25.0%
! CCAAAAAATAGAGAATTGAA+TGG - chr8_2:71736117-71736136 None:intergenic 25.0%
!!! CCATTCAATTCTCTATTTTT+TGG + chr8_2:71736114-71736133 Msa1266750:CDS 25.0%
! AAACAATGCATATCCATTTA+TGG - chr8_2:71736504-71736523 None:intergenic 25.0%
! ATTGTTTGTTCTAGTGAAAA+GGG + chr8_2:71736517-71736536 Msa1266750:intron 25.0%
! TATGTTAGATTGTTAGAGTT+TGG + chr8_2:71736562-71736581 Msa1266750:intron 25.0%
! CTAACTAATTAACTTCCAAA+AGG - chr8_2:71736732-71736751 None:intergenic 25.0%
!!! CTTTTGGAAGTTAATTAGTT+AGG + chr8_2:71736730-71736749 Msa1266750:intron 25.0%
!!! AATTTGTTGGTTAAGTTAGT+CGG + chr8_2:71736760-71736779 Msa1266750:intron 25.0%
!! AAAATTAAGTCAGTGCTATT+AGG + chr8_2:71737086-71737105 Msa1266750:intron 25.0%
!! AAATTAAGTCAGTGCTATTA+GGG + chr8_2:71737087-71737106 Msa1266750:intron 25.0%
! ATGAATCAATAGATCATAGT+TGG + chr8_2:71737131-71737150 Msa1266750:intron 25.0%
!! ATCATAGTTGGTATATATGT+TGG + chr8_2:71737143-71737162 Msa1266750:intron 25.0%
! TAAAACACCCTGTTTAAAAA+CGG - chr8_2:71737284-71737303 None:intergenic 25.0%
!!! TAAAGCAATTCTAAAATGTG+TGG - chr8_2:71737460-71737479 None:intergenic 25.0%
!! AATTGATTCCAATATGGTAA+AGG + chr8_2:71737599-71737618 Msa1266750:intron 25.0%
! GCAAATACTTGATATAGTTA+AGG + chr8_2:71737648-71737667 Msa1266750:intron 25.0%
!!! CAATGCATTGGTTAATTAAT+TGG - chr8_2:71737827-71737846 None:intergenic 25.0%
! ACTTATGTTCTTGACAAAAA+TGG + chr8_2:71737973-71737992 Msa1266750:CDS 25.0%
! ATACTTGAATTAAGGCAAAA+GGG - chr8_2:71738092-71738111 None:intergenic 25.0%
! AATCAGCTACTTAATTACAA+TGG - chr8_2:71738136-71738155 None:intergenic 25.0%
!! ATATCAGTATCTTTTGCATA+TGG + chr8_2:71738273-71738292 Msa1266750:three_prime_UTR 25.0%
! CTTAATTACTAGGTTGAGTT+GGG + chr8_2:71735818-71735837 Msa1266750:five_prime_UTR 30.0%
! TTAATTACTAGGTTGAGTTG+GGG + chr8_2:71735819-71735838 Msa1266750:five_prime_UTR 30.0%
GATAGATTATGATATGAGAG+AGG - chr8_2:71735932-71735951 None:intergenic 30.0%
! TACGTTTTCTTTTCCTTTTG+GGG - chr8_2:71735970-71735989 None:intergenic 30.0%
! GTTACGTTTTCTTTTCCTTT+TGG - chr8_2:71735972-71735991 None:intergenic 30.0%
AATAAATGTGGGGAAAGAAT+TGG - chr8_2:71736058-71736077 None:intergenic 30.0%
!! TTTTGAGGGTGAATAAATGT+GGG - chr8_2:71736069-71736088 None:intergenic 30.0%
!! GTGATGATGATATGTTTTGA+GGG - chr8_2:71736083-71736102 None:intergenic 30.0%
!! AGTGATGATGATATGTTTTG+AGG - chr8_2:71736084-71736103 None:intergenic 30.0%
! AAACCTCTTTTGAATGAAGA+AGG - chr8_2:71736186-71736205 None:intergenic 30.0%
! ATTGTGTGAATAAAGTACCT+TGG - chr8_2:71736217-71736236 None:intergenic 30.0%
CAATAAATTCAAAATGCAGG+TGG - chr8_2:71736272-71736291 None:intergenic 30.0%
! CACCTGCATTTTGAATTTAT+TGG + chr8_2:71736270-71736289 Msa1266750:intron 30.0%
TGCCAATAAATTCAAAATGC+AGG - chr8_2:71736275-71736294 None:intergenic 30.0%
CATTGTTTGTTCTAGTGAAA+AGG + chr8_2:71736516-71736535 Msa1266750:intron 30.0%
GTTAGAGTTTGGTTAGTATT+TGG + chr8_2:71736573-71736592 Msa1266750:intron 30.0%
AGTTTGGTTAGTATTTGGAA+TGG + chr8_2:71736578-71736597 Msa1266750:intron 30.0%
ACATATGTACAAGACTTTCA+AGG - chr8_2:71736934-71736953 None:intergenic 30.0%
AAGACTAATATTCTGGGTAA+TGG - chr8_2:71736988-71737007 None:intergenic 30.0%
GATAGCAAGACTAATATTCT+GGG - chr8_2:71736994-71737013 None:intergenic 30.0%
AGATAGCAAGACTAATATTC+TGG - chr8_2:71736995-71737014 None:intergenic 30.0%
TCAACCATGCAACAATAATT+TGG + chr8_2:71737014-71737033 Msa1266750:intron 30.0%
CAACCATGCAACAATAATTT+GGG + chr8_2:71737015-71737034 Msa1266750:intron 30.0%
!! TGGTATATATGTTGGTTTAG+AGG + chr8_2:71737151-71737170 Msa1266750:intron 30.0%
AATATTCATTGTCATTGCAC+CGG - chr8_2:71737194-71737213 None:intergenic 30.0%
ATTGTTTACCTAAATAGGAC+AGG + chr8_2:71737236-71737255 Msa1266750:intron 30.0%
TTGTTTACCTAAATAGGACA+GGG + chr8_2:71737237-71737256 Msa1266750:intron 30.0%
AAAACACCCTGTTTAAAAAC+GGG - chr8_2:71737283-71737302 None:intergenic 30.0%
GAGAAATGAAATATTGCAGA+AGG - chr8_2:71737438-71737457 None:intergenic 30.0%
CTTCATAAACAACTACTGTT+AGG - chr8_2:71737568-71737587 None:intergenic 30.0%
CTAACAGTAGTTGTTTATGA+AGG + chr8_2:71737566-71737585 Msa1266750:intron 30.0%
CATACTTGAATTAAGGCAAA+AGG - chr8_2:71738093-71738112 None:intergenic 30.0%
TGTTTGATCTCTATATGAGA+AGG - chr8_2:71738199-71738218 None:intergenic 30.0%
ACAGTGTTTGTGATAATTGA+AGG - chr8_2:71738250-71738269 None:intergenic 30.0%
! AGAGGGAAAGTGTATACATT+GGG - chr8_2:71735914-71735933 None:intergenic 35.0%
TTTGAGGGTGAATAAATGTG+GGG - chr8_2:71736068-71736087 None:intergenic 35.0%
!!! GTTTTGAGGGTGAATAAATG+TGG - chr8_2:71736070-71736089 None:intergenic 35.0%
!!! GGTTTTGGAAATGGAAGAAT+GGG - chr8_2:71736151-71736170 None:intergenic 35.0%
!!! TGGTTTTGGAAATGGAAGAA+TGG - chr8_2:71736152-71736171 None:intergenic 35.0%
!!! AGAAGAAGTGGTTTTGGAAA+TGG - chr8_2:71736160-71736179 None:intergenic 35.0%
ACACCTTCTTCATTCAAAAG+AGG + chr8_2:71736180-71736199 Msa1266750:CDS 35.0%
!! AAGAGGTTTCATTTTTGCCA+AGG + chr8_2:71736197-71736216 Msa1266750:CDS 35.0%
GAATTTATTGGCAAATGAGC+AGG + chr8_2:71736282-71736301 Msa1266750:intron 35.0%
!!! CTTTTTTCTCCTTACCTGTT+TGG - chr8_2:71736437-71736456 None:intergenic 35.0%
! TGGTTAGTATTTGGAATGGA+TGG + chr8_2:71736582-71736601 Msa1266750:intron 35.0%
CACTCTTTCATCTCTTTACA+AGG - chr8_2:71736850-71736869 None:intergenic 35.0%
TGTACAAGACTTTCAAGGAA+AGG - chr8_2:71736929-71736948 None:intergenic 35.0%
GTTCCCAAATTATTGTTGCA+TGG - chr8_2:71737021-71737040 None:intergenic 35.0%
GCATTACTGCTAAGATATTG+TGG - chr8_2:71737064-71737083 None:intergenic 35.0%
!! TTTAGAGCCCGTTTTTAAAC+AGG + chr8_2:71737273-71737292 Msa1266750:intron 35.0%
!! TTAGAGCCCGTTTTTAAACA+GGG + chr8_2:71737274-71737293 Msa1266750:intron 35.0%
GAAAAGGCTTCAAGCATTAT+CGG - chr8_2:71737314-71737333 None:intergenic 35.0%
! ATAATGCTTGAAGCCTTTTC+AGG + chr8_2:71737314-71737333 Msa1266750:intron 35.0%
!!! CCTGTTTTTACAGCTTTGTA+GGG + chr8_2:71737345-71737364 Msa1266750:intron 35.0%
ATTTGAGAACTCTTCTCATG+TGG - chr8_2:71737498-71737517 None:intergenic 35.0%
CAACTACTGTTAGGAATTAG+AGG - chr8_2:71737559-71737578 None:intergenic 35.0%
ATTCCAATATGGTAAAGGCA+TGG + chr8_2:71737604-71737623 Msa1266750:intron 35.0%
ATTCCATGCCTTTACCATAT+TGG - chr8_2:71737610-71737629 None:intergenic 35.0%
TATGAGAAGTTCAAGAAAGC+AGG + chr8_2:71737720-71737739 Msa1266750:CDS 35.0%
CTACATTTCATGCAATGCAT+TGG - chr8_2:71737839-71737858 None:intergenic 35.0%
CAATGCATTGCATGAAATGT+AGG + chr8_2:71737837-71737856 Msa1266750:intron 35.0%
AAATGGAAGCTTGTACTTCT+TGG - chr8_2:71737869-71737888 None:intergenic 35.0%
TCATCACTCAACAAGGTAAA+TGG - chr8_2:71737886-71737905 None:intergenic 35.0%
ATTTACCTTGTTGAGTGATG+AGG + chr8_2:71737885-71737904 Msa1266750:CDS 35.0%
TTTACCTTGTTGAGTGATGA+GGG + chr8_2:71737886-71737905 Msa1266750:CDS 35.0%
TAACAAGGTAAGGAAAGAGT+GGG + chr8_2:71737909-71737928 Msa1266750:CDS 35.0%
ATTTCTTTGGATCATTGCCT+GGG + chr8_2:71737944-71737963 Msa1266750:CDS 35.0%
GAATTAAGGCAAAAGGGATA+CGG - chr8_2:71738086-71738105 None:intergenic 35.0%
!! GTAGCTGATTTTGAACACTT+TGG + chr8_2:71738146-71738165 Msa1266750:three_prime_UTR 35.0%
ACAATTATAATGTCTCGCGA+TGG + chr8_2:71738216-71738235 Msa1266750:three_prime_UTR 35.0%
!! GTGTATACATTGGGTTGAGT+GGG - chr8_2:71735905-71735924 None:intergenic 40.0%
!! AGTGTATACATTGGGTTGAG+TGG - chr8_2:71735906-71735925 None:intergenic 40.0%
! GAGAGGGAAAGTGTATACAT+TGG - chr8_2:71735915-71735934 None:intergenic 40.0%
!! GTTTTCTTTTCCTTTTGGGG+TGG - chr8_2:71735967-71735986 None:intergenic 40.0%
ACTTTGCTCTTCATCTTCCA+TGG + chr8_2:71736005-71736024 Msa1266750:CDS 40.0%
ATGTGGGGAAAGAATTGGTA+GGG - chr8_2:71736053-71736072 None:intergenic 40.0%
AATGTGGGGAAAGAATTGGT+AGG - chr8_2:71736054-71736073 None:intergenic 40.0%
TGGAAGAATGGGATAACTTG+AGG - chr8_2:71736140-71736159 None:intergenic 40.0%
! AGGTGTAGAAGAAGTGGTTT+TGG - chr8_2:71736166-71736185 None:intergenic 40.0%
! TGAAGAAGGTGTAGAAGAAG+TGG - chr8_2:71736172-71736191 None:intergenic 40.0%
TGAGTCTCTCCAAGTACAAA+GGG + chr8_2:71736362-71736381 Msa1266750:CDS 40.0%
GGGTAGAAATAAACAACCAC+AGG - chr8_2:71736391-71736410 None:intergenic 40.0%
TGTTCTAGTGAAAAGGGAAG+AGG + chr8_2:71736523-71736542 Msa1266750:intron 40.0%
TACTTCCCTTGTGTTAGTTC+TGG + chr8_2:71736702-71736721 Msa1266750:intron 40.0%
GTTAGGTCTCGTCAATTTGT+TGG + chr8_2:71736747-71736766 Msa1266750:intron 40.0%
! TGGGTAATGGCTGTTTGTTA+GGG - chr8_2:71736975-71736994 None:intergenic 40.0%
AACTTGATGTGCAGTTACTG+TGG + chr8_2:71737038-71737057 Msa1266750:intron 40.0%
!!! GCCTGTTTTTACAGCTTTGT+AGG + chr8_2:71737344-71737363 Msa1266750:intron 40.0%
CCCTACAAAGCTGTAAAAAC+AGG - chr8_2:71737348-71737367 None:intergenic 40.0%
! ATATGAATCCCTAAAAGCGC+AGG - chr8_2:71737703-71737722 None:intergenic 40.0%
TCCTCTCACAAGGTAAAACT+TGG + chr8_2:71737777-71737796 Msa1266750:intron 40.0%
! TCCAAGTTTTACCTTGTGAG+AGG - chr8_2:71737781-71737800 None:intergenic 40.0%
GTAACAAGGTAAGGAAAGAG+TGG + chr8_2:71737908-71737927 Msa1266750:CDS 40.0%
AACAAGGTAAGGAAAGAGTG+GGG + chr8_2:71737910-71737929 Msa1266750:CDS 40.0%
AATGATCCAAAGAAATCGCC+AGG - chr8_2:71737940-71737959 None:intergenic 40.0%
GATTTCTTTGGATCATTGCC+TGG + chr8_2:71737943-71737962 Msa1266750:CDS 40.0%
!!! CATCGATATGCTTTTCAGGT+TGG - chr8_2:71738029-71738048 None:intergenic 40.0%
! GTCTCATCGATATGCTTTTC+AGG - chr8_2:71738033-71738052 None:intergenic 40.0%
!! AAGGCTTTGGAGTAGTTTCA+AGG - chr8_2:71738055-71738074 None:intergenic 40.0%
!! TACGGAAGCATTAAAGGCTT+TGG - chr8_2:71738068-71738087 None:intergenic 40.0%
!! AAGGGATACGGAAGCATTAA+AGG - chr8_2:71738074-71738093 None:intergenic 40.0%
!! GTTGAGTTGGGGTGAGAATT+TGG + chr8_2:71735830-71735849 Msa1266750:five_prime_UTR 45.0%
!! ACAAGATTGGCTTTCTTGCG+TGG - chr8_2:71735856-71735875 None:intergenic 45.0%
! GAAAGCCAATCTTGTTTCGC+TGG + chr8_2:71735861-71735880 Msa1266750:five_prime_UTR 45.0%
TGAAGCCAGCGAAACAAGAT+TGG - chr8_2:71735869-71735888 None:intergenic 45.0%
!! TATACATTGGGTTGAGTGGG+TGG - chr8_2:71735902-71735921 None:intergenic 45.0%
TCTCTATCTACCACCCCAAA+AGG + chr8_2:71735954-71735973 Msa1266750:five_prime_UTR 45.0%
CTCTTCATCTTCCATGGCTA+AGG + chr8_2:71736011-71736030 Msa1266750:CDS 45.0%
ATTGGTAGGGAGAGTGATCA+GGG - chr8_2:71736040-71736059 None:intergenic 45.0%
AATTGGTAGGGAGAGTGATC+AGG - chr8_2:71736041-71736060 None:intergenic 45.0%
GCAAATGAGCAGGTGAGTAA+AGG + chr8_2:71736292-71736311 Msa1266750:intron 45.0%
GAGTAAAGGTTCAAAGCCAC+CGG + chr8_2:71736306-71736325 Msa1266750:CDS 45.0%
TGGTCTTTCAACGTGAAAGC+CGG - chr8_2:71736328-71736347 None:intergenic 45.0%
TTCACGTTGAAAGACCAGGA+TGG + chr8_2:71736331-71736350 Msa1266750:CDS 45.0%
GTGAGTCTCTCCAAGTACAA+AGG + chr8_2:71736361-71736380 Msa1266750:CDS 45.0%
CACAGGTTTCCCTTTGTACT+TGG - chr8_2:71736374-71736393 None:intergenic 45.0%
CAAGTACAAAGGGAAACCTG+TGG + chr8_2:71736372-71736391 Msa1266750:CDS 45.0%
TTACCTGTTTGGTACAGCCA+GGG - chr8_2:71736426-71736445 None:intergenic 45.0%
GTGAAAAGGGAAGAGGTGAA+TGG + chr8_2:71736530-71736549 Msa1266750:intron 45.0%
GTCTGCCAGAACTAACACAA+GGG - chr8_2:71736710-71736729 None:intergenic 45.0%
!!! GTTAGTTCTGGCAGACCTTT+TGG + chr8_2:71736714-71736733 Msa1266750:intron 45.0%
! CTGGGTAATGGCTGTTTGTT+AGG - chr8_2:71736976-71736995 None:intergenic 45.0%
! TAGAGGCACAAGAGTCAATG+TGG + chr8_2:71737168-71737187 Msa1266750:intron 45.0%
ACACGATCCCTGTCCTATTT+AGG - chr8_2:71737247-71737266 None:intergenic 45.0%
AGGCTTCAAGCATTATCGGA+CGG - chr8_2:71737310-71737329 None:intergenic 45.0%
AGCTGTAAAAACAGGCTACC+CGG - chr8_2:71737340-71737359 None:intergenic 45.0%
AGACGATTCTTCCTCTCACA+AGG + chr8_2:71737767-71737786 Msa1266750:CDS 45.0%
GTTACCCTCATCACTCAACA+AGG - chr8_2:71737893-71737912 None:intergenic 45.0%
GTTGAGTGATGAGGGTAACA+AGG + chr8_2:71737894-71737913 Msa1266750:CDS 45.0%
GTGATGAGGGTAACAAGGTA+AGG + chr8_2:71737899-71737918 Msa1266750:CDS 45.0%
AGAACATAAGTCTCTCTCCC+AGG - chr8_2:71737964-71737983 None:intergenic 45.0%
GATCAGGGAAACCTTAGCCA+TGG - chr8_2:71736025-71736044 None:intergenic 50.0%
TCTTTCAACGTGAAAGCCGG+TGG - chr8_2:71736325-71736344 None:intergenic 50.0%
GGCTTTCACGTTGAAAGACC+AGG + chr8_2:71736327-71736346 Msa1266750:CDS 50.0%
TACCTGTTTGGTACAGCCAG+GGG - chr8_2:71736425-71736444 None:intergenic 50.0%
CTTACCTGTTTGGTACAGCC+AGG - chr8_2:71736427-71736446 None:intergenic 50.0%
CTGGCTGTACCAAACAGGTA+AGG + chr8_2:71736425-71736444 Msa1266750:intron 50.0%
GGTCTGCCAGAACTAACACA+AGG - chr8_2:71736711-71736730 None:intergenic 50.0%
GCTTCAAGCATTATCGGACG+GGG - chr8_2:71737308-71737327 None:intergenic 50.0%
GGCTTCAAGCATTATCGGAC+GGG - chr8_2:71737309-71737328 None:intergenic 50.0%
!! TGCTTGAAGCCTTTTCAGGC+CGG + chr8_2:71737318-71737337 Msa1266750:intron 50.0%
! CAGCTTTGTAGGGTCAACCT+CGG + chr8_2:71737355-71737374 Msa1266750:intron 50.0%
GATCTTCTACATCCTCACCG+AGG - chr8_2:71737375-71737394 None:intergenic 50.0%
! TATTGCAGGCCTGCGCTTTT+AGG + chr8_2:71737691-71737710 Msa1266750:intron 50.0%
! ATTGCAGGCCTGCGCTTTTA+GGG + chr8_2:71737692-71737711 Msa1266750:intron 50.0%
GTTCAAGAAAGCAGGAGCAG+AGG + chr8_2:71737728-71737747 Msa1266750:CDS 50.0%
AAAGCAGGAGCAGAGGTTGT+TGG + chr8_2:71737735-71737754 Msa1266750:CDS 50.0%
AAGCAGGAGCAGAGGTTGTT+GGG + chr8_2:71737736-71737755 Msa1266750:CDS 50.0%
GCAGAGGTTGTTGGGATAAG+TGG + chr8_2:71737744-71737763 Msa1266750:CDS 50.0%
GACTCACTGTCTTGCCATCC+TGG - chr8_2:71736348-71736367 None:intergenic 55.0%
GGCACAAGAGTCAATGTGGC+CGG + chr8_2:71737172-71737191 Msa1266750:intron 55.0%
!! GCTTGAAGCCTTTTCAGGCC+GGG + chr8_2:71737319-71737338 Msa1266750:intron 55.0%
TTGTAGGGTCAACCTCGGTG+AGG + chr8_2:71737360-71737379 Msa1266750:intron 55.0%
! GGAGTGCCTGGCGATTTCTT+TGG + chr8_2:71737931-71737950 Msa1266750:CDS 55.0%
TACCCTGCTGATGAGACCCC+TGG + chr8_2:71736406-71736425 Msa1266750:CDS 60.0%
AGCCAGGGGTCTCATCAGCA+GGG - chr8_2:71736411-71736430 None:intergenic 60.0%
GACCCCTGGCTGTACCAAAC+AGG + chr8_2:71736420-71736439 Msa1266750:CDS 60.0%
ACAGGCTACCCGGCCTGAAA+AGG - chr8_2:71737330-71737349 None:intergenic 60.0%
!! AGGAAAGAGTGGGGAGTGCC+TGG + chr8_2:71737919-71737938 Msa1266750:CDS 60.0%
CAGCCAGGGGTCTCATCAGC+AGG - chr8_2:71736412-71736431 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr8_2 gene 71735818 71738320 71735818 ID=Msa1266750;Name=Msa1266750
chr8_2 mRNA 71735818 71738320 71735818 ID=Msa1266750-mRNA-1;Parent=Msa1266750;Name=Msa1266750-mRNA-1;_AED=0.01;_eAED=0.01;_QI=179|1|1|1|1|1|4|243|222
chr8_2 exon 71735818 71736218 71735818 ID=Msa1266750-mRNA-1:exon:24083;Parent=Msa1266750-mRNA-1
chr8_2 exon 71736304 71736441 71736304 ID=Msa1266750-mRNA-1:exon:24084;Parent=Msa1266750-mRNA-1
chr8_2 exon 71737699 71737788 71737699 ID=Msa1266750-mRNA-1:exon:24085;Parent=Msa1266750-mRNA-1
chr8_2 exon 71737859 71738320 71737859 ID=Msa1266750-mRNA-1:exon:24086;Parent=Msa1266750-mRNA-1
chr8_2 five_prime_UTR 71735818 71735996 71735818 ID=Msa1266750-mRNA-1:five_prime_utr;Parent=Msa1266750-mRNA-1
chr8_2 CDS 71735997 71736218 71735997 ID=Msa1266750-mRNA-1:cds;Parent=Msa1266750-mRNA-1
chr8_2 CDS 71736304 71736441 71736304 ID=Msa1266750-mRNA-1:cds;Parent=Msa1266750-mRNA-1
chr8_2 CDS 71737699 71737788 71737699 ID=Msa1266750-mRNA-1:cds;Parent=Msa1266750-mRNA-1
chr8_2 CDS 71737859 71738077 71737859 ID=Msa1266750-mRNA-1:cds;Parent=Msa1266750-mRNA-1
chr8_2 three_prime_UTR 71738078 71738320 71738078 ID=Msa1266750-mRNA-1:three_prime_utr;Parent=Msa1266750-mRNA-1
Gene Sequence

>Msa1266750

ATGTTATCACTTTGCTCTTCATCTTCCATGGCTAAGGTTTCCCTGATCACTCTCCCTACCAATTCTTTCCCCACATTTATTCACCCTCAAAACATATCATCATCACTTACTTCTACTCCATTCAATTCTCTATTTTTTGGCCTCAAGTTATCCCATTCTTCCATTTCCAAAACCACTTCTTCTACACCTTCTTCATTCAAAAGAGGTTTCATTTTTGCCAAGGTGAGTAAAGGTTCAAAGCCACCGGCTTTCACGTTGAAAGACCAGGATGGCAAGACAGTGAGTCTCTCCAAGTACAAAGGGAAACCTGTGGTTGTTTATTTCTACCCTGCTGATGAGACCCCTGGCTGTACCAAACAGGCCTGCGCTTTTAGGGATTCATATGAGAAGTTCAAGAAAGCAGGAGCAGAGGTTGTTGGGATAAGTGGAGACGATTCTTCCTCTCACAAGGCATTTGCCAAGAAGTACAAGCTTCCATTTACCTTGTTGAGTGATGAGGGTAACAAGGTAAGGAAAGAGTGGGGAGTGCCTGGCGATTTCTTTGGATCATTGCCTGGGAGAGAGACTTATGTTCTTGACAAAAATGGTGTCGTTCAGCTTGTATACAACAATCAGTTCCAACCTGAAAAGCATATCGATGAGACCTTGAAACTACTCCAAAGCCTTTAA

Protein sequence

>Msa1266750

MLSLCSSSSMAKVSLITLPTNSFPTFIHPQNISSSLTSTPFNSLFFGLKLSHSSISKTTSSTPSSFKRGFIFAKVSKGSKPPAFTLKDQDGKTVSLSKYKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVVGISGDDSSSHKAFAKKYKLPFTLLSDEGNKVRKEWGVPGDFFGSLPGRETYVLDKNGVVQLVYNNQFQPEKHIDETLKLLQSL*