AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0402490


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0402490 MtrunA17_Chr3g0092091 96.838 253 6 1 1 251 1 253 0.0 501
Msa0402490 MtrunA17_Chr8g0345631 48.361 244 114 6 15 248 25 266 1.14e-70 218
Msa0402490 MtrunA17_Chr2g0301081 50.246 203 93 3 56 250 65 267 5.95e-64 200
Msa0402490 MtrunA17_Chr3g0133901 49.275 207 95 5 52 248 57 263 5.63e-61 193
Msa0402490 MtrunA17_Chr2g0296081 93.103 87 6 0 165 251 19 105 1.51e-54 171
Msa0402490 MtrunA17_Chr5g0448421 45.673 208 80 8 67 247 73 274 2.98e-44 150
Msa0402490 MtrunA17_Chr5g0448411 45.673 208 80 8 67 247 71 272 5.44e-44 149
Msa0402490 MtrunA17_Chr6g0462031 37.611 226 108 8 38 247 30 238 3.46e-38 133
Msa0402490 MtrunA17_Chr1g0157481 36.893 206 98 8 67 248 131 328 1.98e-29 112
Msa0402490 MtrunA17_Chr6g0476641 37.436 195 98 5 68 249 98 281 2.88e-29 111
Msa0402490 MtrunA17_Chr2g0279001 35.714 210 97 7 53 231 57 259 1.37e-27 106
Msa0402490 MtrunA17_Chr6g0453141 34.737 190 100 5 67 241 72 252 1.91e-26 103
Msa0402490 MtrunA17_Chr6g0453151 34.921 189 99 5 68 241 140 319 4.14e-26 103
Msa0402490 MtrunA17_Chr4g0051941 34.211 190 101 5 67 241 73 253 4.39e-26 102
Msa0402490 MtrunA17_Chr6g0453181 34.211 190 101 5 67 241 72 252 4.64e-26 102
Msa0402490 MtrunA17_Chr4g0006181 31.890 254 89 7 56 248 115 345 8.26e-26 103
Msa0402490 MtrunA17_Chr6g0453161 34.921 189 99 5 68 241 75 254 7.48e-25 102
Msa0402490 MtrunA17_Chr6g0453161 34.392 189 100 5 68 241 340 519 8.90e-25 102
Msa0402490 MtrunA17_Chr5g0447531 33.505 194 95 6 68 241 73 252 6.02e-24 97.1
Msa0402490 MtrunA17_Chr2g0318521 36.649 191 95 6 68 241 70 251 5.03e-23 94.4
Msa0402490 MtrunA17_Chr6g0480171 86.486 37 5 0 215 251 29 65 2.27e-17 73.9
Msa0402490 MtrunA17_Chr6g0464511 32.584 178 84 6 68 241 54 199 8.04e-15 71.2
Msa0402490 MtrunA17_Chr6g0453171 51.429 70 27 2 176 238 13 82 5.65e-13 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0402490 AT3G47470.1 86.853 251 30 2 1 248 1 251 6.67e-161 446
Msa0402490 AT3G61470.1 51.351 222 97 4 38 248 34 255 2.18e-70 217
Msa0402490 AT1G45474.2 48.498 233 107 6 26 247 21 251 4.07e-65 203
Msa0402490 AT1G45474.1 48.498 233 107 6 26 247 21 251 4.07e-65 203
Msa0402490 AT1G19150.1 43.404 235 123 3 24 248 34 268 2.62e-62 197
Msa0402490 AT1G61520.2 45.327 214 84 9 61 247 8 215 6.73e-44 148
Msa0402490 AT1G61520.3 45.673 208 80 9 67 247 69 270 5.46e-43 147
Msa0402490 AT1G61520.1 45.673 208 80 9 67 247 69 270 5.46e-43 147
Msa0402490 AT3G54890.1 39.216 204 92 7 55 243 47 233 2.10e-37 132
Msa0402490 AT2G05070.1 34.715 193 92 6 69 241 74 252 9.97e-27 104
Msa0402490 AT1G76570.1 36.893 206 98 8 67 248 129 326 1.07e-26 105
Msa0402490 AT2G05100.1 34.715 193 92 6 69 241 74 252 1.13e-26 104
Msa0402490 AT3G08940.2 29.965 287 117 9 23 248 22 285 1.50e-26 104
Msa0402490 AT4G10340.1 37.173 191 100 6 70 249 91 272 3.08e-26 103
Msa0402490 AT2G34420.1 31.274 259 153 8 1 241 1 252 4.00e-26 103
Msa0402490 AT3G54890.2 33.500 200 75 5 55 243 47 199 4.16e-26 101
Msa0402490 AT2G34430.1 33.690 187 107 4 67 241 72 253 4.53e-26 103
Msa0402490 AT1G29920.1 33.871 186 106 4 68 241 74 254 5.13e-26 102
Msa0402490 AT1G29910.1 33.871 186 106 4 68 241 74 254 5.13e-26 102
Msa0402490 AT1G29930.1 33.871 186 106 4 68 241 74 254 5.13e-26 102
Msa0402490 AT5G01530.1 31.418 261 95 7 49 248 51 288 5.79e-26 103
Msa0402490 AT3G27690.1 34.197 193 93 6 69 241 75 253 7.47e-26 102
Msa0402490 AT3G27690.2 34.197 193 93 6 69 241 107 285 1.39e-25 102
Msa0402490 AT1G15820.1 32.692 260 117 12 16 231 11 256 5.08e-25 100
Msa0402490 AT5G54270.1 37.696 191 93 6 68 241 71 252 1.06e-23 96.7
Msa0402490 AT5G28450.1 50.495 101 44 3 154 248 71 171 1.24e-22 91.7
Msa0402490 AT3G54890.4 34.857 175 82 7 55 214 47 204 2.07e-20 86.7
Msa0402490 AT2G05100.2 32.778 180 87 6 69 228 74 239 2.63e-18 82.8
Msa0402490 AT2G40100.1 30.172 232 79 7 56 227 59 267 2.26e-17 79.7
Msa0402490 AT3G54890.3 35.135 111 61 4 55 154 47 157 4.25e-13 65.9

Find 113 sgRNAs with CRISPR-Local

Find 176 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTATTACAATTCTTTGAATT+TGG 0.078928 3_2:+30688429 Msa0402490:three_prime_UTR
CTTTCAAAATTCATCCATTC+AGG 0.215050 3_2:-30688302 None:intergenic
TTCCCTGCATCGTACCATTT+TGG 0.221678 3_2:-30687532 None:intergenic
TGATAATTTAATGTAGAAAA+TGG 0.224044 3_2:-30688743 None:intergenic
AAACCTAGTTTCCCTTAAAA+AGG 0.234455 3_2:+30688834 Msa0402490:three_prime_UTR
ATTGGCAATGTTGGCATTCT+TGG 0.255174 3_2:+30688116 Msa0402490:CDS
CAAACCACATGGCCGGAAAA+TGG 0.281257 3_2:-30686413 None:intergenic
CCAATGTTGGTGAAGACTTC+AGG 0.283187 3_2:-30687496 None:intergenic
TATTACAATTCTTTGAATTT+GGG 0.297339 3_2:+30688430 Msa0402490:three_prime_UTR
GTTCCTCTGTACATAGAAAT+AGG 0.308373 3_2:-30688349 None:intergenic
AGGTTCCTTACTGGTTCTTC+TGG 0.312510 3_2:+30686442 Msa0402490:CDS
TTGAAATCAAGGTTCCTTAC+TGG 0.312689 3_2:+30686433 Msa0402490:CDS
AACATAGGCTTTCATGTCAT+TGG 0.323632 3_2:-30688266 None:intergenic
AATCTGAGTAGACCTATATA+AGG 0.336322 3_2:-30688910 None:intergenic
GAATCATCAACGTTCCAAAA+TGG 0.354053 3_2:+30687518 Msa0402490:CDS
TGTATTCATATTAGTCTTCC+CGG 0.354614 3_2:+30687355 Msa0402490:intron
GGCCATGTGGTTTGAAATCA+AGG 0.359010 3_2:+30686422 Msa0402490:CDS
TGGGCTATGTTAGGTGTTGC+AGG 0.363791 3_2:+30687463 Msa0402490:CDS
TTTGAACTTTGCACCAACTT+TGG 0.369100 3_2:+30687735 Msa0402490:CDS
TGAAACAGTTCTCTATCGTT+AGG 0.379493 3_2:+30688474 Msa0402490:three_prime_UTR
TGAACAGAGAAGTGTCTATT+AGG 0.379797 3_2:+30686470 Msa0402490:CDS
ACAAACCACTTCAAGTTCTC+TGG 0.381297 3_2:-30687415 None:intergenic
TCAAATGTTTGCAGGGAGAT+TGG 0.385168 3_2:+30688098 Msa0402490:intron
TTGGCAATGTTGGCATTCTT+GGG 0.393741 3_2:+30688117 Msa0402490:CDS
GAGATATAGTAATGAGATAT+AGG 0.394693 3_2:-30688689 None:intergenic
TTGCCTGGCTTGGCTTCTCC+AGG 0.405062 3_2:+30686550 Msa0402490:CDS
ATTTGAACCGTGACTTTCAA+TGG 0.407460 3_2:+30688578 Msa0402490:three_prime_UTR
CGATAGAGAACTGTTTCAAA+AGG 0.419396 3_2:-30688469 None:intergenic
AGGAGAGTGGTTGCCTGGCT+TGG 0.433061 3_2:+30686540 Msa0402490:CDS
ATTGCTTGAAGATAGGATCT+TGG 0.434539 3_2:-30687663 None:intergenic
AAGAAAGGAGAGTGGTTGCC+TGG 0.443648 3_2:+30686535 Msa0402490:CDS
TTTAAGGTTGAAGCTAAGAA+AGG 0.444868 3_2:+30686520 Msa0402490:CDS
GTCATTCAGCACAATGTGAC+AGG 0.452299 3_2:+30688144 Msa0402490:CDS
ATCTGAGTAGACCTATATAA+GGG 0.453950 3_2:-30688909 None:intergenic
AAACTAGGTTTCTCCATGCT+TGG 0.454898 3_2:-30688822 None:intergenic
AAATTATCAACTTGGTTCAC+AGG 0.455429 3_2:+30688757 Msa0402490:three_prime_UTR
CAGCACAATGTGACAGGAAA+AGG 0.457752 3_2:+30688150 Msa0402490:CDS
GAAGTGTCTATTAGGCCAAT+GGG 0.459274 3_2:+30686478 Msa0402490:CDS
TTCTCTTTAGCCTCCAAAGT+TGG 0.464702 3_2:-30687748 None:intergenic
GAAACAGTTCTCTATCGTTA+GGG 0.464877 3_2:+30688475 Msa0402490:three_prime_UTR
GAACTTTGCACCAACTTTGG+AGG 0.467219 3_2:+30687738 Msa0402490:CDS
CAATGTTGGTGAAGACTTCA+GGG 0.467740 3_2:-30687495 None:intergenic
GGATAACCAACCTCACCCTT+TGG 0.471853 3_2:-30687694 None:intergenic
AAGCTGTATTGCTTGAAGAT+AGG 0.474202 3_2:-30687670 None:intergenic
GTTCAAGCCGAGCTTGTGAA+TGG 0.475321 3_2:+30687436 Msa0402490:CDS
GTTCCAAAATGGTACGATGC+AGG 0.482951 3_2:+30687529 Msa0402490:CDS
CCTGAAGTCTTCACCAACAT+TGG 0.483026 3_2:+30687496 Msa0402490:CDS
AATGGACGTTGGGCTATGTT+AGG 0.483699 3_2:+30687454 Msa0402490:CDS
AAAGTTGGTGCAAAGTTCAA+AGG 0.485442 3_2:-30687733 None:intergenic
TAACCTGGAGAAGCCAAGCC+AGG 0.485555 3_2:-30686553 None:intergenic
TGCAGGGAGATTGGCAATGT+TGG 0.487632 3_2:+30688107 Msa0402490:intron
AGACAATGGATTCGATCCAT+TGG 0.488323 3_2:+30687378 Msa0402490:CDS
CGAGCTTGTGAATGGACGTT+GGG 0.494207 3_2:+30687444 Msa0402490:CDS
GATAGAGAACTGTTTCAAAA+GGG 0.495143 3_2:-30688468 None:intergenic
GGATTACATTAGAATAACAT+AGG 0.495974 3_2:-30688281 None:intergenic
ATCTTCTAATCTCAACGTAA+TGG 0.497255 3_2:-30687609 None:intergenic
GACAATGGATTCGATCCATT+GGG 0.497505 3_2:+30687379 Msa0402490:CDS
AAAGAGAAGGAAATTGCTAA+TGG 0.501630 3_2:+30687763 Msa0402490:CDS
AGCTTGCCAAAGGGTGAGGT+TGG 0.502406 3_2:+30687688 Msa0402490:CDS
AAGGGTGAGGTTGGTTATCC+CGG 0.503847 3_2:+30687697 Msa0402490:CDS
TCTACATTAAATTATCAACT+TGG 0.511924 3_2:+30688749 Msa0402490:three_prime_UTR
TGGATCGAATCCATTGTCTC+CGG 0.512990 3_2:-30687374 None:intergenic
GAACAATAGTGTTGTGCCAT+GGG 0.519149 3_2:-30688206 None:intergenic
AAGTTGGTGCAAAGTTCAAA+GGG 0.525813 3_2:-30687732 None:intergenic
GGATCTTGGTTAACACTACC+AGG 0.527012 3_2:-30687649 None:intergenic
AACGTTGATGATTCCAATGT+TGG 0.527016 3_2:-30687509 None:intergenic
TGCAGCACCTTTCAGACCCA+TGG 0.527064 3_2:+30688190 Msa0402490:CDS
ATTACGTTGAGATTAGAAGA+TGG 0.529955 3_2:+30687611 Msa0402490:CDS
TATTCTAATGTAATCCTGAA+TGG 0.532739 3_2:+30688288 Msa0402490:three_prime_UTR
TTGATTTCAAACCACATGGC+CGG 0.533466 3_2:-30686420 None:intergenic
ATGCTTGGAGTGAGATGTGT+TGG 0.539677 3_2:-30688807 None:intergenic
AGAAGTGTCTATTAGGCCAA+TGG 0.541077 3_2:+30686477 Msa0402490:CDS
ATTAGTCTTCCCGGAGACAA+TGG 0.543395 3_2:+30687364 Msa0402490:intron
GGATCGAATCCATTGTCTCC+GGG 0.543577 3_2:-30687373 None:intergenic
AACACATCTCACTCCAAGCA+TGG 0.549940 3_2:+30688809 Msa0402490:three_prime_UTR
TTCCAAAATGGTACGATGCA+GGG 0.551197 3_2:+30687530 Msa0402490:CDS
TGCTGCAAGAGGTTATCAAA+TGG 0.555368 3_2:-30688174 None:intergenic
CTCGAGACTTCCTCATGTCT+AGG 0.557467 3_2:+30688548 Msa0402490:three_prime_UTR
ATACAGCTTGCCAAAGGGTG+AGG 0.558596 3_2:+30687684 Msa0402490:CDS
CTATGTACAGAGGAACTAAG+TGG 0.559926 3_2:+30688356 Msa0402490:three_prime_UTR
GGATCCTCAGCTAGTCCCAA+TGG 0.561283 3_2:-30687394 None:intergenic
AAAATGGCTTTCTAAGTGGC+GGG 0.565209 3_2:-30688501 None:intergenic
CAAGCAATACAGCTTGCCAA+AGG 0.568836 3_2:+30687678 Msa0402490:CDS
AAGCAATACAGCTTGCCAAA+GGG 0.573830 3_2:+30687679 Msa0402490:CDS
TGAACAATAGTGTTGTGCCA+TGG 0.575513 3_2:-30688207 None:intergenic
AACTTTGGAGGCTAAAGAGA+AGG 0.580248 3_2:+30687750 Msa0402490:CDS
ACTTACCAGAAGAACCAGTA+AGG 0.587465 3_2:-30686447 None:intergenic
GCAGAAGGTGAACACCCCAT+TGG 0.591132 3_2:-30686493 None:intergenic
CCGAGCTTGTGAATGGACGT+TGG 0.595865 3_2:+30687443 Msa0402490:CDS
CGATCCATTGGGACTAGCTG+AGG 0.599171 3_2:+30687390 Msa0402490:CDS
TGTTGTGCCATGGGTCTGAA+AGG 0.604426 3_2:-30688197 None:intergenic
CCAACGTCCATTCACAAGCT+CGG 0.607811 3_2:-30687443 None:intergenic
GGGCTATGTTAGGTGTTGCA+GGG 0.612177 3_2:+30687464 Msa0402490:CDS
AACCTTGATTTCAAACCACA+TGG 0.619985 3_2:-30686424 None:intergenic
TTGAAGCTAAGAAAGGAGAG+TGG 0.624150 3_2:+30686527 Msa0402490:CDS
AGGATCCAGAGAACTTGAAG+TGG 0.628726 3_2:+30687410 Msa0402490:CDS
TGGCAAGACATTAAGAACCC+TGG 0.635088 3_2:+30687631 Msa0402490:CDS
TGTGTCTTGAGTATTAGCAA+TGG 0.636337 3_2:+30688859 Msa0402490:three_prime_UTR
CATGGCCACTGTTACTACAC+AGG 0.640157 3_2:+30686381 None:intergenic
GATCCTATTTCTATGTACAG+AGG 0.648589 3_2:+30688346 Msa0402490:three_prime_UTR
GGTCTGAAAGGTGCTGCAAG+AGG 0.650437 3_2:-30688185 None:intergenic
TCTGAGTAGACCTATATAAG+GGG 0.653175 3_2:-30688908 None:intergenic
AATGCTCAGTCCTAGACATG+AGG 0.657953 3_2:-30688558 None:intergenic
TTATGAAAACAAATTGACAA+CGG 0.660029 3_2:+30689063 Msa0402490:three_prime_UTR
TCAACCTTAAAAGAAGCAGA+AGG 0.663014 3_2:-30686508 None:intergenic
GATCTTGGTTAACACTACCA+GGG 0.677002 3_2:-30687648 None:intergenic
AGAAGCCTGTGTAGTAACAG+TGG 0.678873 3_2:-30686386 None:intergenic
CTCGTGGCCATTGAAAGTCA+CGG 0.685313 3_2:-30688585 None:intergenic
GGTGAGGTTGGTTATCCCGG+TGG 0.687574 3_2:+30687700 Msa0402490:CDS
AGAGTCTACTGAGATACTCG+TGG 0.689010 3_2:-30688601 None:intergenic
ATTGTTCAAACACTGAGTGG+TGG 0.700611 3_2:+30688222 Msa0402490:CDS
ACTATTGTTCAAACACTGAG+TGG 0.708128 3_2:+30688219 Msa0402490:CDS
AAGTGTCTATTAGGCCAATG+GGG 0.719152 3_2:+30686479 Msa0402490:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AGCTATTATTTTATTAGTAT+AGG + chr3_2:30686843-30686862 Msa0402490:intron 15.0%
!!! TCAAATTTGATTTGTTAATT+AGG - chr3_2:30688003-30688022 None:intergenic 15.0%
!! TATTACAATTCTTTGAATTT+GGG + chr3_2:30688430-30688449 Msa0402490:three_prime_UTR 15.0%
!!! CTAAAACTATTTTAGAATTT+AGG + chr3_2:30688633-30688652 Msa0402490:three_prime_UTR 15.0%
!! TGATAATTTAATGTAGAAAA+TGG - chr3_2:30688746-30688765 None:intergenic 15.0%
!!! TTTGATTTGTTAATTAGGTA+TGG - chr3_2:30687998-30688017 None:intergenic 20.0%
!!! CAAATTTGATTGATTTCATA+AGG + chr3_2:30688014-30688033 Msa0402490:intron 20.0%
!! CTATTACAATTCTTTGAATT+TGG + chr3_2:30688429-30688448 Msa0402490:three_prime_UTR 20.0%
!!! AACTATTTTAGAATTTAGGT+TGG + chr3_2:30688637-30688656 Msa0402490:three_prime_UTR 20.0%
!! TCTACATTAAATTATCAACT+TGG + chr3_2:30688749-30688768 Msa0402490:three_prime_UTR 20.0%
!!! TGTTTTCATAAACTCTTTTT+AGG - chr3_2:30689054-30689073 None:intergenic 20.0%
!! TTATGAAAACAAATTGACAA+CGG + chr3_2:30689063-30689082 Msa0402490:three_prime_UTR 20.0%
! TTGAATATTGATCTGTATGT+TGG - chr3_2:30686797-30686816 None:intergenic 25.0%
! ATTGACATCTTTGCTTAAAT+GGG + chr3_2:30687825-30687844 Msa0402490:intron 25.0%
! CTAAATTAGTCAACCTAAAT+TGG - chr3_2:30687932-30687951 None:intergenic 25.0%
! TCTTCTTGATTATGAAACTA+TGG + chr3_2:30688058-30688077 Msa0402490:intron 25.0%
! GGATTACATTAGAATAACAT+AGG - chr3_2:30688284-30688303 None:intergenic 25.0%
! TATTCTAATGTAATCCTGAA+TGG + chr3_2:30688288-30688307 Msa0402490:three_prime_UTR 25.0%
!!! ATGAATTTTGAAAGACATCT+GGG + chr3_2:30688311-30688330 Msa0402490:three_prime_UTR 25.0%
! GAGATATAGTAATGAGATAT+AGG - chr3_2:30688692-30688711 None:intergenic 25.0%
! AATGGAAAAAATAGAAGTGA+AGG + chr3_2:30688877-30688896 Msa0402490:three_prime_UTR 25.0%
! ATGGAAAAAATAGAAGTGAA+GGG + chr3_2:30688878-30688897 Msa0402490:three_prime_UTR 25.0%
! TTTAAGGTTGAAGCTAAGAA+AGG + chr3_2:30686520-30686539 Msa0402490:CDS 30.0%
!! TGTATTCATATTAGTCTTCC+CGG + chr3_2:30687355-30687374 Msa0402490:intron 30.0%
ATCTTCTAATCTCAACGTAA+TGG - chr3_2:30687612-30687631 None:intergenic 30.0%
ATTACGTTGAGATTAGAAGA+TGG + chr3_2:30687611-30687630 Msa0402490:CDS 30.0%
AAAGAGAAGGAAATTGCTAA+TGG + chr3_2:30687763-30687782 Msa0402490:CDS 30.0%
CATTGACATCTTTGCTTAAA+TGG + chr3_2:30687824-30687843 Msa0402490:intron 30.0%
TGTGTATTTCAAATGTTTGC+AGG + chr3_2:30688090-30688109 Msa0402490:intron 30.0%
GTGTATTTCAAATGTTTGCA+GGG + chr3_2:30688091-30688110 Msa0402490:intron 30.0%
CTTTCAAAATTCATCCATTC+AGG - chr3_2:30688305-30688324 None:intergenic 30.0%
!! GATGAATTTTGAAAGACATC+TGG + chr3_2:30688310-30688329 Msa0402490:three_prime_UTR 30.0%
GATAGAGAACTGTTTCAAAA+GGG - chr3_2:30688471-30688490 None:intergenic 30.0%
GATGAGATATGTTCCAAAAA+TGG - chr3_2:30688520-30688539 None:intergenic 30.0%
AAATTATCAACTTGGTTCAC+AGG + chr3_2:30688757-30688776 Msa0402490:three_prime_UTR 30.0%
AAACCTAGTTTCCCTTAAAA+AGG + chr3_2:30688834-30688853 Msa0402490:three_prime_UTR 30.0%
TGGAAAAAATAGAAGTGAAG+GGG + chr3_2:30688879-30688898 Msa0402490:three_prime_UTR 30.0%
ATCTGAGTAGACCTATATAA+GGG - chr3_2:30688912-30688931 None:intergenic 30.0%
AATCTGAGTAGACCTATATA+AGG - chr3_2:30688913-30688932 None:intergenic 30.0%
AACCTTGATTTCAAACCACA+TGG - chr3_2:30686427-30686446 None:intergenic 35.0%
TTGAAATCAAGGTTCCTTAC+TGG + chr3_2:30686433-30686452 Msa0402490:CDS 35.0%
!! TGAACAGAGAAGTGTCTATT+AGG + chr3_2:30686470-30686489 Msa0402490:CDS 35.0%
! TTCACCTTCTGCTTCTTTTA+AGG + chr3_2:30686504-30686523 Msa0402490:CDS 35.0%
TCAACCTTAAAAGAAGCAGA+AGG - chr3_2:30686511-30686530 None:intergenic 35.0%
TATGCATAAGCTCAACTCAA+GGG - chr3_2:30686824-30686843 None:intergenic 35.0%
GATCATGTTCAAAGACTCAA+CGG - chr3_2:30687165-30687184 None:intergenic 35.0%
TTGAGTCTTTGAACATGATC+TGG + chr3_2:30687165-30687184 Msa0402490:intron 35.0%
TGTAAGTGTACACTTGATGA+AGG + chr3_2:30687258-30687277 Msa0402490:intron 35.0%
!! AACGTTGATGATTCCAATGT+TGG - chr3_2:30687512-30687531 None:intergenic 35.0%
GAATCATCAACGTTCCAAAA+TGG + chr3_2:30687518-30687537 Msa0402490:CDS 35.0%
ATTGCTTGAAGATAGGATCT+TGG - chr3_2:30687666-30687685 None:intergenic 35.0%
AAGCTGTATTGCTTGAAGAT+AGG - chr3_2:30687673-30687692 None:intergenic 35.0%
AAAGGGTTAAAAATTCCACC+GGG - chr3_2:30687718-30687737 None:intergenic 35.0%
CAAAGGGTTAAAAATTCCAC+CGG - chr3_2:30687719-30687738 None:intergenic 35.0%
!! AAGTTGGTGCAAAGTTCAAA+GGG - chr3_2:30687735-30687754 None:intergenic 35.0%
!! AAAGTTGGTGCAAAGTTCAA+AGG - chr3_2:30687736-30687755 None:intergenic 35.0%
TTTGAACTTTGCACCAACTT+TGG + chr3_2:30687735-30687754 Msa0402490:CDS 35.0%
ATCTTTGCTTAAATGGGACA+TGG + chr3_2:30687831-30687850 Msa0402490:intron 35.0%
TCTTTGCTTAAATGGGACAT+GGG + chr3_2:30687832-30687851 Msa0402490:intron 35.0%
ACTATTGTTCAAACACTGAG+TGG + chr3_2:30688219-30688238 Msa0402490:CDS 35.0%
AACATAGGCTTTCATGTCAT+TGG - chr3_2:30688269-30688288 None:intergenic 35.0%
!! GATCCTATTTCTATGTACAG+AGG + chr3_2:30688346-30688365 Msa0402490:three_prime_UTR 35.0%
GTTCCTCTGTACATAGAAAT+AGG - chr3_2:30688352-30688371 None:intergenic 35.0%
CGATAGAGAACTGTTTCAAA+AGG - chr3_2:30688472-30688491 None:intergenic 35.0%
TGAAACAGTTCTCTATCGTT+AGG + chr3_2:30688474-30688493 Msa0402490:three_prime_UTR 35.0%
GAAACAGTTCTCTATCGTTA+GGG + chr3_2:30688475-30688494 Msa0402490:three_prime_UTR 35.0%
AAAAATGGCTTTCTAAGTGG+CGG - chr3_2:30688505-30688524 None:intergenic 35.0%
TCCAAAAATGGCTTTCTAAG+TGG - chr3_2:30688508-30688527 None:intergenic 35.0%
ATTTGAACCGTGACTTTCAA+TGG + chr3_2:30688578-30688597 Msa0402490:three_prime_UTR 35.0%
!! AGACCTTTTTAAGGGAAACT+AGG - chr3_2:30688840-30688859 None:intergenic 35.0%
! CAAGACACAGACCTTTTTAA+GGG - chr3_2:30688848-30688867 None:intergenic 35.0%
! TCAAGACACAGACCTTTTTA+AGG - chr3_2:30688849-30688868 None:intergenic 35.0%
TGTGTCTTGAGTATTAGCAA+TGG + chr3_2:30688859-30688878 Msa0402490:three_prime_UTR 35.0%
GGAAAAAATAGAAGTGAAGG+GGG + chr3_2:30688880-30688899 Msa0402490:three_prime_UTR 35.0%
TCTGAGTAGACCTATATAAG+GGG - chr3_2:30688911-30688930 None:intergenic 35.0%
TTGATTTCAAACCACATGGC+CGG - chr3_2:30686423-30686442 None:intergenic 40.0%
ACTTACCAGAAGAACCAGTA+AGG - chr3_2:30686450-30686469 None:intergenic 40.0%
!! AGAAGTGTCTATTAGGCCAA+TGG + chr3_2:30686477-30686496 Msa0402490:CDS 40.0%
! GAAGTGTCTATTAGGCCAAT+GGG + chr3_2:30686478-30686497 Msa0402490:CDS 40.0%
AAGTGTCTATTAGGCCAATG+GGG + chr3_2:30686479-30686498 Msa0402490:CDS 40.0%
TTGAAGCTAAGAAAGGAGAG+TGG + chr3_2:30686527-30686546 Msa0402490:CDS 40.0%
AGTGTGACACTGAAACATGT+CGG + chr3_2:30686740-30686759 Msa0402490:intron 40.0%
ATGCATAAGCTCAACTCAAG+GGG - chr3_2:30686823-30686842 None:intergenic 40.0%
CTATGCATAAGCTCAACTCA+AGG - chr3_2:30686825-30686844 None:intergenic 40.0%
! AGACAATGGATTCGATCCAT+TGG + chr3_2:30687378-30687397 Msa0402490:CDS 40.0%
! GACAATGGATTCGATCCATT+GGG + chr3_2:30687379-30687398 Msa0402490:CDS 40.0%
! ACAAACCACTTCAAGTTCTC+TGG - chr3_2:30687418-30687437 None:intergenic 40.0%
! CAATGTTGGTGAAGACTTCA+GGG - chr3_2:30687498-30687517 None:intergenic 40.0%
TTCCAAAATGGTACGATGCA+GGG + chr3_2:30687530-30687549 Msa0402490:CDS 40.0%
GATCTTGGTTAACACTACCA+GGG - chr3_2:30687651-30687670 None:intergenic 40.0%
AAGCAATACAGCTTGCCAAA+GGG + chr3_2:30687679-30687698 Msa0402490:CDS 40.0%
TTCTCTTTAGCCTCCAAAGT+TGG - chr3_2:30687751-30687770 None:intergenic 40.0%
! AACTTTGGAGGCTAAAGAGA+AGG + chr3_2:30687750-30687769 Msa0402490:CDS 40.0%
AGATGTCAATGCAGCATTTC+AGG - chr3_2:30687815-30687834 None:intergenic 40.0%
TAGTCAACCTAAATTGGCAC+CGG - chr3_2:30687926-30687945 None:intergenic 40.0%
TCAAATGTTTGCAGGGAGAT+TGG + chr3_2:30688098-30688117 Msa0402490:intron 40.0%
ATTGGCAATGTTGGCATTCT+TGG + chr3_2:30688116-30688135 Msa0402490:CDS 40.0%
TTGGCAATGTTGGCATTCTT+GGG + chr3_2:30688117-30688136 Msa0402490:CDS 40.0%
TGCTGCAAGAGGTTATCAAA+TGG - chr3_2:30688177-30688196 None:intergenic 40.0%
GAACAATAGTGTTGTGCCAT+GGG - chr3_2:30688209-30688228 None:intergenic 40.0%
TGAACAATAGTGTTGTGCCA+TGG - chr3_2:30688210-30688229 None:intergenic 40.0%
ATTGTTCAAACACTGAGTGG+TGG + chr3_2:30688222-30688241 Msa0402490:CDS 40.0%
CTATGTACAGAGGAACTAAG+TGG + chr3_2:30688356-30688375 Msa0402490:three_prime_UTR 40.0%
AAAATGGCTTTCTAAGTGGC+GGG - chr3_2:30688504-30688523 None:intergenic 40.0%
!! GCCACTTAGAAAGCCATTTT+TGG + chr3_2:30688504-30688523 Msa0402490:three_prime_UTR 40.0%
AAACTAGGTTTCTCCATGCT+TGG - chr3_2:30688825-30688844 None:intergenic 40.0%
AGAAGCCTGTGTAGTAACAG+TGG - chr3_2:30686389-30686408 None:intergenic 45.0%
! GGCCATGTGGTTTGAAATCA+AGG + chr3_2:30686422-30686441 Msa0402490:CDS 45.0%
!! AGGTTCCTTACTGGTTCTTC+TGG + chr3_2:30686442-30686461 Msa0402490:CDS 45.0%
TGCATAAGCTCAACTCAAGG+GGG - chr3_2:30686822-30686841 None:intergenic 45.0%
!! ATTAGTCTTCCCGGAGACAA+TGG + chr3_2:30687364-30687383 Msa0402490:intron 45.0%
TGGATCGAATCCATTGTCTC+CGG - chr3_2:30687377-30687396 None:intergenic 45.0%
AGGATCCAGAGAACTTGAAG+TGG + chr3_2:30687410-30687429 Msa0402490:CDS 45.0%
AATGGACGTTGGGCTATGTT+AGG + chr3_2:30687454-30687473 Msa0402490:CDS 45.0%
! CCAATGTTGGTGAAGACTTC+AGG - chr3_2:30687499-30687518 None:intergenic 45.0%
CCTGAAGTCTTCACCAACAT+TGG + chr3_2:30687496-30687515 Msa0402490:CDS 45.0%
GTTCCAAAATGGTACGATGC+AGG + chr3_2:30687529-30687548 Msa0402490:CDS 45.0%
! TTCCCTGCATCGTACCATTT+TGG - chr3_2:30687535-30687554 None:intergenic 45.0%
TGGCAAGACATTAAGAACCC+TGG + chr3_2:30687631-30687650 Msa0402490:CDS 45.0%
GGATCTTGGTTAACACTACC+AGG - chr3_2:30687652-30687671 None:intergenic 45.0%
CAAGCAATACAGCTTGCCAA+AGG + chr3_2:30687678-30687697 Msa0402490:CDS 45.0%
GAACTTTGCACCAACTTTGG+AGG + chr3_2:30687738-30687757 Msa0402490:CDS 45.0%
TGCTTAAATGGGACATGGGT+TGG + chr3_2:30687836-30687855 Msa0402490:intron 45.0%
!! GTGGTATTAACTTGCGACCT+GGG + chr3_2:30687863-30687882 Msa0402490:intron 45.0%
TCGAACCTGAAACCTTAAGG+AGG - chr3_2:30687897-30687916 None:intergenic 45.0%
GCATCGAACCTGAAACCTTA+AGG - chr3_2:30687900-30687919 None:intergenic 45.0%
AGTCAACCTAAATTGGCACC+GGG - chr3_2:30687925-30687944 None:intergenic 45.0%
GTCATTCAGCACAATGTGAC+AGG + chr3_2:30688144-30688163 Msa0402490:CDS 45.0%
CAGCACAATGTGACAGGAAA+AGG + chr3_2:30688150-30688169 Msa0402490:CDS 45.0%
AATGCTCAGTCCTAGACATG+AGG - chr3_2:30688561-30688580 None:intergenic 45.0%
AGAGTCTACTGAGATACTCG+TGG - chr3_2:30688604-30688623 None:intergenic 45.0%
ATGCTTGGAGTGAGATGTGT+TGG - chr3_2:30688810-30688829 None:intergenic 45.0%
AACACATCTCACTCCAAGCA+TGG + chr3_2:30688809-30688828 Msa0402490:three_prime_UTR 45.0%
!! AGGCTTCTGCAGCCATTTTC+CGG + chr3_2:30686401-30686420 Msa0402490:CDS 50.0%
CAAACCACATGGCCGGAAAA+TGG - chr3_2:30686416-30686435 None:intergenic 50.0%
AAGAAAGGAGAGTGGTTGCC+TGG + chr3_2:30686535-30686554 Msa0402490:CDS 50.0%
GATAGACATACCTGCCAGTG+AGG - chr3_2:30686579-30686598 None:intergenic 50.0%
TGTCACACTCGCTACATCGA+TGG - chr3_2:30686729-30686748 None:intergenic 50.0%
GGATCGAATCCATTGTCTCC+GGG - chr3_2:30687376-30687395 None:intergenic 50.0%
GTTCAAGCCGAGCTTGTGAA+TGG + chr3_2:30687436-30687455 Msa0402490:CDS 50.0%
CCAACGTCCATTCACAAGCT+CGG - chr3_2:30687446-30687465 None:intergenic 50.0%
CGAGCTTGTGAATGGACGTT+GGG + chr3_2:30687444-30687463 Msa0402490:CDS 50.0%
! TGGGCTATGTTAGGTGTTGC+AGG + chr3_2:30687463-30687482 Msa0402490:CDS 50.0%
! GGGCTATGTTAGGTGTTGCA+GGG + chr3_2:30687464-30687483 Msa0402490:CDS 50.0%
ATACAGCTTGCCAAAGGGTG+AGG + chr3_2:30687684-30687703 Msa0402490:CDS 50.0%
GGATAACCAACCTCACCCTT+TGG - chr3_2:30687697-30687716 None:intergenic 50.0%
! AAGGGTGAGGTTGGTTATCC+CGG + chr3_2:30687697-30687716 Msa0402490:CDS 50.0%
GGTCGCAAGTTAATACCACC+AGG - chr3_2:30687862-30687881 None:intergenic 50.0%
!! GGTGGTATTAACTTGCGACC+TGG + chr3_2:30687862-30687881 Msa0402490:intron 50.0%
GTGCTCCTCCTTAAGGTTTC+AGG + chr3_2:30687889-30687908 Msa0402490:intron 50.0%
!! GTTTCAGGTTCGATGCTTCC+CGG + chr3_2:30687904-30687923 Msa0402490:intron 50.0%
! ATGCTTCCCGGTGCCAATTT+AGG + chr3_2:30687916-30687935 Msa0402490:intron 50.0%
TGCAGGGAGATTGGCAATGT+TGG + chr3_2:30688107-30688126 Msa0402490:intron 50.0%
TGTTGTGCCATGGGTCTGAA+AGG - chr3_2:30688200-30688219 None:intergenic 50.0%
CTCGAGACTTCCTCATGTCT+AGG + chr3_2:30688548-30688567 Msa0402490:three_prime_UTR 50.0%
CTCGTGGCCATTGAAAGTCA+CGG - chr3_2:30688588-30688607 None:intergenic 50.0%
GCAGAAGGTGAACACCCCAT+TGG - chr3_2:30686496-30686515 None:intergenic 55.0%
TAACCTGGAGAAGCCAAGCC+AGG - chr3_2:30686556-30686575 None:intergenic 55.0%
GCTTCTCCAGGTTACCTCAC+TGG + chr3_2:30686562-30686581 Msa0402490:intron 55.0%
TACCTGCCAGTGAGGTAACC+TGG - chr3_2:30686571-30686590 None:intergenic 55.0%
!! CGATCCATTGGGACTAGCTG+AGG + chr3_2:30687390-30687409 Msa0402490:CDS 55.0%
GGATCCTCAGCTAGTCCCAA+TGG - chr3_2:30687397-30687416 None:intergenic 55.0%
CCGAGCTTGTGAATGGACGT+TGG + chr3_2:30687443-30687462 Msa0402490:CDS 55.0%
AGCTTGCCAAAGGGTGAGGT+TGG + chr3_2:30687688-30687707 Msa0402490:CDS 55.0%
!! AAATGGGACATGGGTTGGCC+TGG + chr3_2:30687841-30687860 Msa0402490:intron 55.0%
! TTAAGGAGGAGCACACTCCC+AGG - chr3_2:30687883-30687902 None:intergenic 55.0%
! TGGGAGTGTGCTCCTCCTTA+AGG + chr3_2:30687882-30687901 Msa0402490:intron 55.0%
!! GGTCTGAAAGGTGCTGCAAG+AGG - chr3_2:30688188-30688207 None:intergenic 55.0%
TGCAGCACCTTTCAGACCCA+TGG + chr3_2:30688190-30688209 Msa0402490:CDS 55.0%
GGGGGACTTGCCCCTTATAT+AGG + chr3_2:30688898-30688917 Msa0402490:three_prime_UTR 55.0%
!! GCAGCCATTTTCCGGCCATG+TGG + chr3_2:30686409-30686428 Msa0402490:CDS 60.0%
AGGAGAGTGGTTGCCTGGCT+TGG + chr3_2:30686540-30686559 Msa0402490:CDS 60.0%
!! TTGCCTGGCTTGGCTTCTCC+AGG + chr3_2:30686550-30686569 Msa0402490:CDS 60.0%
CTCCAGGTTACCTCACTGGC+AGG + chr3_2:30686566-30686585 Msa0402490:intron 60.0%
! GGTGAGGTTGGTTATCCCGG+TGG + chr3_2:30687700-30687719 Msa0402490:CDS 60.0%
!! TGGGACATGGGTTGGCCTGG+TGG + chr3_2:30687844-30687863 Msa0402490:intron 65.0%
Chromosome Type Strat End Strand Name
chr3_2 gene 30686382 30689101 30686382 ID=Msa0402490;Name=Msa0402490
chr3_2 mRNA 30686382 30689101 30686382 ID=Msa0402490-mRNA-1;Parent=Msa0402490;Name=Msa0402490-mRNA-1;_AED=0.05;_eAED=0.05;_QI=0|0.33|0.5|0.75|1|1|4|850|251
chr3_2 exon 30686382 30686571 30686382 ID=Msa0402490-mRNA-1:exon:6134;Parent=Msa0402490-mRNA-1
chr3_2 exon 30686865 30686874 30686865 ID=Msa0402490-mRNA-1:exon:6135;Parent=Msa0402490-mRNA-1
chr3_2 exon 30687369 30687784 30687369 ID=Msa0402490-mRNA-1:exon:6136;Parent=Msa0402490-mRNA-1
chr3_2 exon 30688112 30689101 30688112 ID=Msa0402490-mRNA-1:exon:6137;Parent=Msa0402490-mRNA-1
chr3_2 CDS 30686382 30686571 30686382 ID=Msa0402490-mRNA-1:cds;Parent=Msa0402490-mRNA-1
chr3_2 CDS 30686865 30686874 30686865 ID=Msa0402490-mRNA-1:cds;Parent=Msa0402490-mRNA-1
chr3_2 CDS 30687369 30687784 30687369 ID=Msa0402490-mRNA-1:cds;Parent=Msa0402490-mRNA-1
chr3_2 CDS 30688112 30688251 30688112 ID=Msa0402490-mRNA-1:cds;Parent=Msa0402490-mRNA-1
chr3_2 three_prime_UTR 30688252 30689101 30688252 ID=Msa0402490-mRNA-1:three_prime_utr;Parent=Msa0402490-mRNA-1
Gene Sequence

>Msa0402490

ATGGCCACTGTTACTACACAGGCTTCTGCAGCCATTTTCCGGCCATGTGGTTTGAAATCAAGGTTCCTTACTGGTTCTTCTGGTAAGTTGAACAGAGAAGTGTCTATTAGGCCAATGGGGTGTTCACCTTCTGCTTCTTTTAAGGTTGAAGCTAAGAAAGGAGAGTGGTTGCCTGGCTTGGCTTCTCCAGGATCTGTCAATCTTCCCGGAGACAATGGATTCGATCCATTGGGACTAGCTGAGGATCCAGAGAACTTGAAGTGGTTTGTTCAAGCCGAGCTTGTGAATGGACGTTGGGCTATGTTAGGTGTTGCAGGGATGTTACTCCCTGAAGTCTTCACCAACATTGGAATCATCAACGTTCCAAAATGGTACGATGCAGGGAAAGAAGAATACTTTGCTTCATCTTCAACACTCTTTGTGATCGAGTTCATTTTGTTCCATTACGTTGAGATTAGAAGATGGCAAGACATTAAGAACCCTGGTAGTGTTAACCAAGATCCTATCTTCAAGCAATACAGCTTGCCAAAGGGTGAGGTTGGTTATCCCGGTGGAATTTTTAACCCTTTGAACTTTGCACCAACTTTGGAGGCTAAAGAGAAGGAAATTGCTAATGGGAGATTGGCAATGTTGGCATTCTTGGGATTTGTCATTCAGCACAATGTGACAGGAAAAGGACCATTTGATAACCTCTTGCAGCACCTTTCAGACCCATGGCACAACACTATTGTTCAAACACTGAGTGGTGGCAACTAA

Protein sequence

>Msa0402490

MATVTTQASAAIFRPCGLKSRFLTGSSGKLNREVSIRPMGCSPSASFKVEAKKGEWLPGLASPGSVNLPGDNGFDPLGLAEDPENLKWFVQAELVNGRWAMLGVAGMLLPEVFTNIGIINVPKWYDAGKEEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPKGEVGYPGGIFNPLNFAPTLEAKEKEIANGRLAMLAFLGFVIQHNVTGKGPFDNLLQHLSDPWHNTIVQTLSGGN*