AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0051040


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0051040 MtrunA17_Chr1g0154401 95.082 915 10 4 1 911 1 884 0.0 1771
Msa0051040 MtrunA17_Chr3g0141311 75.926 918 174 8 1 911 1 878 0.0 1412
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0051040 AT1G47550.1 80.870 920 134 7 1 911 1 887 0.0 1519
Msa0051040 AT1G47550.2 80.782 921 134 8 1 911 1 888 0.0 1514
Msa0051040 AT1G47560.1 78.587 920 155 7 1 911 1 887 0.0 1470

Find 174 sgRNAs with CRISPR-Local

Find 890 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GACCATCTCTAAAGATGTTT+TGG 0.191387 1_2:+5080545 Msa0051040:CDS
TAAAGGCTCGCTTTCTAAAA+TGG 0.192233 1_2:-5083249 None:intergenic
TGATGATGATTTGGGAATTA+TGG 0.206606 1_2:+5087080 Msa0051040:CDS
AGAGGACATGGAGGCTCTTT+TGG 0.215755 1_2:+5081559 Msa0051040:CDS
AGTAATACCTCATTTATTAA+AGG 0.218040 1_2:-5083266 None:intergenic
TCCTAAGATGCCGTGACTTT+TGG 0.251356 1_2:-5078190 None:intergenic
CGCATAAGTGAGGTCAATAT+TGG 0.260424 1_2:-5085848 None:intergenic
ATAACAGAACGATATCTTTC+TGG 0.263028 1_2:+5089001 Msa0051040:CDS
GAGAAATTACTTTGCTAGTT+TGG 0.269162 1_2:+5086145 Msa0051040:CDS
GTTCATTTCTTTCAATTTGA+TGG 0.269204 1_2:-5089217 None:intergenic
TGAATCACTTCAGGATTTAC+TGG 0.296040 1_2:+5087813 Msa0051040:CDS
GAGCCACACTTTGGCTTCTA+AGG 0.298652 1_2:-5080357 None:intergenic
AGTATATGATCATGCTAATA+TGG 0.299003 1_2:-5091193 None:intergenic
AAGAACTGTTACCTTCCTTA+TGG 0.301508 1_2:+5091945 Msa0051040:CDS
TGTTGTGGAGTTGGCTCTTT+GGG 0.302230 1_2:+5080596 Msa0051040:CDS
CCATGTCCTCTTCCTCTGCC+TGG 0.306661 1_2:-5081547 None:intergenic
TCAGGGACAGTCTAGGGATT+TGG 0.331946 1_2:+5090414 Msa0051040:CDS
TTTCTTATACATCGCATTGA+TGG 0.332287 1_2:-5091900 None:intergenic
AATCCAACTGTTTGGCTTGA+AGG 0.341279 1_2:+5086785 Msa0051040:CDS
ACAGATGTGAATGTCTCATT+AGG 0.344916 1_2:-5092829 None:intergenic
TAATACAAACTAACCTCTTC+AGG 0.347914 1_2:-5091386 None:intergenic
TTCAGATACCTTTCCAGCTT+GGG 0.348314 1_2:+5091734 Msa0051040:intron
CATTTGCTGCTTCCAGAGCC+TGG 0.354262 1_2:-5083220 None:intergenic
TCCAAAAGTCACGGCATCTT+AGG 0.364442 1_2:+5078189 Msa0051040:CDS
ACATTACTCTGAGTTGAAAC+AGG 0.370628 1_2:-5081449 None:intergenic
CCTCAATCCTTCGAGCAAAC+TGG 0.370769 1_2:-5091343 None:intergenic
ATGTTGTGGAGTTGGCTCTT+TGG 0.371883 1_2:+5080595 Msa0051040:CDS
CATTTGCAAGCTGTTATTAC+GGG 0.376820 1_2:-5085563 None:intergenic
GCATTTGCAAGCTGTTATTA+CGG 0.384833 1_2:-5085564 None:intergenic
TCGTATGGAGCAGTACATTC+AGG 0.402425 1_2:+5090396 Msa0051040:CDS
AACAAATGTTGTAGACGATA+TGG 0.408324 1_2:+5084391 Msa0051040:CDS
CATCTAGAAATCCAACTGTT+TGG 0.408587 1_2:+5086777 Msa0051040:CDS
AGAACTGTTACCTTCCTTAT+GGG 0.409508 1_2:+5091946 Msa0051040:CDS
TAGCGTAATGTTTGCAACCT+TGG 0.411602 1_2:+5090896 Msa0051040:CDS
AACAACAAACTCCGGCGAAA+TGG 0.412068 1_2:+5078074 Msa0051040:exon
GAAGAGAGAGCTCCAGGCTC+TGG 0.412581 1_2:+5083208 Msa0051040:CDS
TGAGACACTTAATATTTGTA+AGG 0.419440 1_2:+5089941 Msa0051040:CDS
TGTGTGTCGCAGGTGTTGTA+TGG 0.421271 1_2:+5084356 Msa0051040:intron
CCTCCAGGAGGTGTTGTTAA+CGG 0.424284 1_2:+5087036 Msa0051040:CDS
TACCTTGCATTTGTCCCATA+AGG 0.425552 1_2:-5091960 None:intergenic
CTCAATGCAATTAAGATGTA+TGG 0.428539 1_2:-5089922 None:intergenic
ACGTCTTCTTCAGCATTTGA+AGG 0.429611 1_2:+5086354 Msa0051040:CDS
GGCGAAATGGCGAAATCTAC+TGG 0.433895 1_2:+5078087 Msa0051040:exon
CTCTAAACTTGCTTCTTCGC+CGG 0.440685 1_2:+5086519 Msa0051040:CDS
AGCTTTAAATGAATCACTTC+AGG 0.446554 1_2:+5087804 Msa0051040:CDS
TGAACGGAATGTTCGCCAAA+TGG 0.447886 1_2:+5089235 Msa0051040:CDS
AGCTTGTTCATAGGCTTCAC+TGG 0.449048 1_2:-5091162 None:intergenic
TTTCAGATACCTTTCCAGCT+TGG 0.449546 1_2:+5091733 Msa0051040:intron
GGAGTTGGCTCTTTGGGCTA+AGG 0.449911 1_2:+5080602 Msa0051040:CDS
AAGACTGAAGAGAGAGCTCC+AGG 0.451275 1_2:+5083202 Msa0051040:CDS
CATGTCCTCTTCCTCTGCCT+GGG 0.452338 1_2:-5081546 None:intergenic
GCGCGTGCAAGCTTGTTCAT+AGG 0.452902 1_2:-5091171 None:intergenic
ACTATGCTGCCTTTCAGAAT+AGG 0.453773 1_2:+5090970 Msa0051040:CDS
TCTAAACTTGCTTCTTCGCC+GGG 0.459252 1_2:+5086520 Msa0051040:CDS
TAGTTTGCAACGTGTTTGAC+AGG 0.460366 1_2:+5085742 Msa0051040:intron
AGCCTTGACAAGAATTGCTT+GGG 0.460705 1_2:+5086470 Msa0051040:CDS
TACCGCAGGTCAGCATGATC+AGG 0.461449 1_2:-5086313 None:intergenic
TGCGATCCTTGCAACTCGTA+TGG 0.462885 1_2:+5090381 Msa0051040:CDS
CTTCCTCTGCCTGGGAGACA+AGG 0.464656 1_2:-5081538 None:intergenic
GATAAGATGATCTTCTGCTT+AGG 0.468986 1_2:-5078156 None:intergenic
TTGCCGTTAACAACACCTCC+TGG 0.473791 1_2:-5087039 None:intergenic
TATCCCACTTCTGGTGGATG+AGG 0.473804 1_2:+5086886 Msa0051040:CDS
TCAGTCATAGCGGAAGCAAC+AGG 0.474576 1_2:-5081485 None:intergenic
GAGCCTTGACAAGAATTGCT+TGG 0.477359 1_2:+5086469 Msa0051040:intron
ACATCTATACCAACGACCTT+AGG 0.483257 1_2:-5080576 None:intergenic
AGATGGTCAAGATGCAAAGA+AGG 0.483558 1_2:-5080530 None:intergenic
CAGATGTGAATGTCTCATTA+GGG 0.490732 1_2:-5092828 None:intergenic
GAACGGAATGTTCGCCAAAT+GGG 0.491396 1_2:+5089236 Msa0051040:CDS
TGCCAACATTGTGCCCACTT+TGG 0.493261 1_2:+5091121 Msa0051040:CDS
TGTAGGATAGAACACCCATT+TGG 0.494048 1_2:-5089250 None:intergenic
GCATAAGTGAGGTCAATATT+GGG 0.495344 1_2:-5085847 None:intergenic
TGTCTCCCAGGCAGAGGAAG+AGG 0.497242 1_2:+5081541 Msa0051040:CDS
CCAGGCAGAGGAAGAGGACA+TGG 0.498118 1_2:+5081547 Msa0051040:CDS
GGTCGCCTTCCTAAGGTCGT+TGG 0.498133 1_2:+5080567 Msa0051040:CDS
CCAGTTTGCTCGAAGGATTG+AGG 0.499274 1_2:+5091343 Msa0051040:CDS
TCGGCTTACCCCAGATAAGC+TGG 0.499604 1_2:-5091791 None:intergenic
AAATTACTTTGCTAGTTTGG+TGG 0.505402 1_2:+5086148 Msa0051040:CDS
TGCTTGGCGACCTAGAGTCT+CGG 0.508432 1_2:+5089059 Msa0051040:CDS
GTTGTTAACGGCAACAAAGC+TGG 0.515692 1_2:+5087048 Msa0051040:CDS
TAACAGCTTGCAAATGCAAT+CGG 0.519484 1_2:+5085570 Msa0051040:CDS
GTTCCTACACTTGTTCCTCC+AGG 0.522078 1_2:+5087021 Msa0051040:CDS
GGTCAGAAAGCTGATGCAGC+AGG 0.525891 1_2:+5089022 Msa0051040:CDS
CTAGAGAGAGCAAGAACCCT+AGG 0.526198 1_2:-5078249 None:intergenic
GAGGTTCATTTGATGAAGAT+CGG 0.527546 1_2:+5085764 Msa0051040:CDS
TTTACCTCATCCACCAGAAG+TGG 0.528959 1_2:-5086890 None:intergenic
CTGCAAAACTATACAAGCTA+AGG 0.529157 1_2:+5080101 Msa0051040:CDS
TGCATTGATATGCAGCGTAA+AGG 0.531677 1_2:-5088974 None:intergenic
CTATATCCTCTCTCATGTGC+CGG 0.533397 1_2:-5084445 None:intergenic
ATGATAAAACTTGGCCAAAG+TGG 0.534570 1_2:-5091135 None:intergenic
GGCCAAAGTGGGCACAATGT+TGG 0.535297 1_2:-5091123 None:intergenic
ATTGCGGAGGAGCCACACTT+TGG 0.535826 1_2:-5080366 None:intergenic
TTTGACAGCCCAAGCTGGAA+AGG 0.535949 1_2:-5091742 None:intergenic
AGTAGATTTCGCCATTTCGC+CGG 0.537886 1_2:-5078085 None:intergenic
AGTACATTCAGGGACAGTCT+AGG 0.538864 1_2:+5090407 Msa0051040:CDS
CGTATGGAGCAGTACATTCA+GGG 0.540146 1_2:+5090397 Msa0051040:CDS
ATCAGATACTGTAGAAGTAT+CGG 0.542477 1_2:-5086837 None:intergenic
GTGTGTCGCAGGTGTTGTAT+GGG 0.543774 1_2:+5084357 Msa0051040:intron
TTTCCTACAGCATTAACAAA+GGG 0.545010 1_2:+5079805 Msa0051040:intron
AAGCGAGCCTTTAATAAATG+AGG 0.548321 1_2:+5083259 Msa0051040:CDS
ATGTCCTGCACTTGTACCGC+AGG 0.550211 1_2:-5086327 None:intergenic
TCTCAAAGTTTCTTTCAGAT+CGG 0.551116 1_2:+5078048 Msa0051040:five_prime_UTR
GAGCCTTCAAGCCAAACAGT+TGG 0.551912 1_2:-5086788 None:intergenic
GGTCGTTGGTATAGATGTTG+TGG 0.552064 1_2:+5080581 Msa0051040:CDS
GTACATTCAGGGACAGTCTA+GGG 0.552198 1_2:+5090408 Msa0051040:CDS
TGGTATAGATGTTGTGGAGT+TGG 0.552996 1_2:+5080587 Msa0051040:CDS
GTCGTCACATGGCTAAACCT+AGG 0.553281 1_2:+5078232 Msa0051040:CDS
ACTCAGAGTAATGTGAAAGA+TGG 0.555269 1_2:+5081458 Msa0051040:CDS
AGACCTTGTCTCCCAGGCAG+AGG 0.555832 1_2:+5081535 Msa0051040:CDS
GAGTTCGTTGGCAAACTCAC+GGG 0.558303 1_2:-5086738 None:intergenic
TCTAATGTGCAGGTATGTCA+TGG 0.560159 1_2:+5083151 Msa0051040:intron
CTGACCTGCGGTACAAGTGC+AGG 0.560980 1_2:+5086323 Msa0051040:CDS
GCATAGATATCCGAGACTCT+AGG 0.561277 1_2:-5089069 None:intergenic
GACGATATGGATGAATGGTT+AGG 0.561367 1_2:+5084404 Msa0051040:CDS
TGCAGGTATGTCATGGGTGT+TGG 0.561387 1_2:+5083158 Msa0051040:intron
CGATGCGAAATATTGATGAC+AGG 0.564291 1_2:+5080392 Msa0051040:CDS
ACTGGCCTGATGATAAAACT+TGG 0.564945 1_2:-5091144 None:intergenic
TTTCGCATCGTCCATTGCGG+AGG 0.565572 1_2:-5080379 None:intergenic
GTGTTCTATCCTACATTCCC+AGG 0.567457 1_2:+5089258 Msa0051040:CDS
TTCCTTATGGGACAAATGCA+AGG 0.570541 1_2:+5091958 Msa0051040:CDS
AAAGTGTGGCTCCTCCGCAA+TGG 0.571456 1_2:+5080368 Msa0051040:CDS
GCGGTTGCGTGTACCTTCTG+AGG 0.571549 1_2:+5085636 Msa0051040:CDS
TGTACTAGCACGGAGTTCGT+TGG 0.571800 1_2:-5086750 None:intergenic
GTTCACCGTTGCACCTGAAG+AGG 0.573911 1_2:+5091373 Msa0051040:CDS
TCGTCACATGGCTAAACCTA+GGG 0.575321 1_2:+5078233 Msa0051040:CDS
GACCCAAGCAATTCTTGTCA+AGG 0.576128 1_2:-5086472 None:intergenic
GGAGTTCGTTGGCAAACTCA+CGG 0.578167 1_2:-5086739 None:intergenic
CAAGCTTTCTAGTCGTCACA+TGG 0.580101 1_2:+5078221 Msa0051040:CDS
GGGCACTTCAAGACCGCGCA+AGG 0.583310 1_2:-5085827 None:intergenic
TGGCTTGAAGGCTCAACTAG+TGG 0.583999 1_2:+5086797 Msa0051040:CDS
CTAATGTGCAGGTATGTCAT+GGG 0.585515 1_2:+5083152 Msa0051040:intron
CGATAAGGGCATACCTCAGA+AGG 0.586076 1_2:-5085649 None:intergenic
TTGCATTTGTCCCATAAGGA+AGG 0.588364 1_2:-5091956 None:intergenic
ATCAAATTGAAAGAAATGAA+CGG 0.588598 1_2:+5089219 Msa0051040:CDS
CATTACTCTGAGTTGAAACA+GGG 0.589470 1_2:-5081448 None:intergenic
ATCCGTGTTTCCAAAAGTCA+CGG 0.589908 1_2:+5078180 Msa0051040:CDS
TGATAAAACTTGGCCAAAGT+GGG 0.590443 1_2:-5091134 None:intergenic
ACCCAAAACATCTTTAGAGA+TGG 0.596278 1_2:-5080547 None:intergenic
AAAATGTAGAAGCATGTGAA+TGG 0.596677 1_2:+5085794 Msa0051040:CDS
ATCGGAGAAACAACAAACTC+CGG 0.596903 1_2:+5078066 Msa0051040:five_prime_UTR
TCACTTCAGGATTTACTGGA+CGG 0.597289 1_2:+5087817 Msa0051040:CDS
CATGTGACGACTAGAAAGCT+TGG 0.598169 1_2:-5078220 None:intergenic
TTACGCTGCATATCAATGCA+TGG 0.604703 1_2:+5088977 Msa0051040:CDS
TTGTAGACGATATGGATGAA+TGG 0.606497 1_2:+5084399 Msa0051040:CDS
TTGCTGATTCACAAGCTCGC+CGG 0.608321 1_2:-5078125 None:intergenic
AAGTGGGCACAATGTTGGCA+AGG 0.609563 1_2:-5091118 None:intergenic
CCTCCTGGAGGAACAAGTGT+AGG 0.612956 1_2:-5087024 None:intergenic
AACAGCGGGGACAGTTGAAG+AGG 0.617770 1_2:+5086290 Msa0051040:intron
ATTTCCTACAGCATTAACAA+AGG 0.620993 1_2:+5079804 Msa0051040:intron
CAGAGTAATGTGAAAGATGG+TGG 0.621486 1_2:+5081461 Msa0051040:CDS
AAACTTGCTTCTTCGCCGGG+AGG 0.622356 1_2:+5086523 Msa0051040:CDS
ACTAACCTCTTCAGGTGCAA+CGG 0.625555 1_2:-5091378 None:intergenic
CTATACCAACGACCTTAGGA+AGG 0.627890 1_2:-5080572 None:intergenic
TTACCTCATCCACCAGAAGT+GGG 0.628965 1_2:-5086889 None:intergenic
AAACACTTGCCTATTCTGAA+AGG 0.631024 1_2:-5090979 None:intergenic
TTTGCAACGTGTTTGACAGG+AGG 0.631196 1_2:+5085745 Msa0051040:CDS
CTCTCATGCTCGCATAAGTG+AGG 0.634936 1_2:-5085858 None:intergenic
GCACATTCAATGTTAAACTC+CGG 0.636021 1_2:+5084426 Msa0051040:CDS
CATGAGAGAGGATATAGCAT+CGG 0.642742 1_2:+5084451 Msa0051040:CDS
ATATTTCGCATCGTCCATTG+CGG 0.642787 1_2:-5080382 None:intergenic
GGCCTGATCATGCTGACCTG+CGG 0.645686 1_2:+5086311 Msa0051040:CDS
TAGTGGATGTACATTTACAC+TGG 0.646809 1_2:+5080159 Msa0051040:CDS
CCTACACTTGTTCCTCCAGG+AGG 0.654770 1_2:+5087024 Msa0051040:CDS
TAAACTCCGGCACATGAGAG+AGG 0.656316 1_2:+5084439 Msa0051040:CDS
AGCTTGATAAGCTTCTTGAG+CGG 0.662867 1_2:+5085617 Msa0051040:CDS
AGTGTAAATGTACATCCACT+AGG 0.666732 1_2:-5080157 None:intergenic
ACTGCTCCATACGAGTTGCA+AGG 0.673914 1_2:-5090387 None:intergenic
TAACCTTAGAAGCCAAAGTG+TGG 0.674900 1_2:+5080354 Msa0051040:CDS
GGCAGAGGAAGAGGACATGG+AGG 0.686109 1_2:+5081550 Msa0051040:CDS
CTGGCGACGATGTTGAACTC+CGG 0.706984 1_2:+5078106 Msa0051040:CDS
CAACTCTCTCTCAGTCATAG+CGG 0.712038 1_2:-5081495 None:intergenic
AAATAACAAATCTCTCATCG+AGG 0.720933 1_2:+5085594 Msa0051040:CDS
CCGTTAACAACACCTCCTGG+AGG 0.723227 1_2:-5087036 None:intergenic
TGGTTGACTAGTGCCTTGCG+CGG 0.736160 1_2:+5085814 Msa0051040:CDS
ATTACTCTGAGTTGAAACAG+GGG 0.762722 1_2:-5081447 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATAAAAAAATTTAAAATTAT+AGG - chr1_2:5082613-5082632 None:intergenic 0.0%
!!! ATTTTATATATATTTTTATT+TGG + chr1_2:5083719-5083738 Msa0051040:intron 0.0%
!! AATTTATTATATAAAATTTA+AGG + chr1_2:5090056-5090075 Msa0051040:intron 0.0%
!! TAATATTAATATGTTTGAAT+GGG - chr1_2:5081017-5081036 None:intergenic 10.0%
!! ATAATATTAATATGTTTGAA+TGG - chr1_2:5081018-5081037 None:intergenic 10.0%
!! CCTATATTATAAATAAAATT+TGG - chr1_2:5081756-5081775 None:intergenic 10.0%
!!! CCAAATTTTATTTATAATAT+AGG + chr1_2:5081753-5081772 Msa0051040:intron 10.0%
!!! AATATATGTATATTTTACAA+GGG - chr1_2:5081972-5081991 None:intergenic 10.0%
!!! AAATATATGTATATTTTACA+AGG - chr1_2:5081973-5081992 None:intergenic 10.0%
!!! AATATATGTATATTTTACAA+GGG - chr1_2:5081972-5081991 None:intergenic 10.0%
!!! AAATATATGTATATTTTACA+AGG - chr1_2:5081973-5081992 None:intergenic 10.0%
!!! TAACCATATTTTTAATTATA+AGG + chr1_2:5082194-5082213 Msa0051040:intron 10.0%
!!! TCTTTTTTTTAATTAAAAAG+TGG - chr1_2:5083306-5083325 None:intergenic 10.0%
!!! TATATTTTTATTTGGTTTAT+TGG + chr1_2:5083727-5083746 Msa0051040:intron 10.0%
!!! AATATTATTTTAAACTCAAA+AGG - chr1_2:5085322-5085341 None:intergenic 10.0%
!! AAAATAATATTACTTAGATT+TGG + chr1_2:5085331-5085350 Msa0051040:intron 10.0%
!!! ATATCTTTGAAAATAATTTA+TGG + chr1_2:5085357-5085376 Msa0051040:intron 10.0%
!!! TTAATTTCTACAATTTTAAT+TGG + chr1_2:5085954-5085973 Msa0051040:intron 10.0%
!!! TCTATAATTTTTTTTTTTGT+TGG + chr1_2:5087731-5087750 Msa0051040:intron 10.0%
!!! GAAGTTTATTTATTTAATTT+TGG + chr1_2:5089607-5089626 Msa0051040:intron 10.0%
!! TATAATATCAACATATAATT+AGG + chr1_2:5090204-5090223 Msa0051040:intron 10.0%
!!! AAATTGATATAGAATATTTT+AGG - chr1_2:5091716-5091735 None:intergenic 10.0%
!! AAAATTAACTTTGATATGTT+TGG + chr1_2:5078909-5078928 Msa0051040:intron 15.0%
!!! AAAGTGATTTTGTTTTATAA+GGG + chr1_2:5079681-5079700 Msa0051040:intron 15.0%
!! ACAAAAACAAAAAATAAACA+CGG - chr1_2:5080036-5080055 None:intergenic 15.0%
!!! GTTTATTTTTTGTTTTTGTT+TGG + chr1_2:5080037-5080056 Msa0051040:intron 15.0%
!! AAATCAATTAAAAGTTAATG+AGG - chr1_2:5081217-5081236 None:intergenic 15.0%
!!! TTTTTACAAAAATGTGAAAT+AGG + chr1_2:5081415-5081434 Msa0051040:intron 15.0%
!! TTATTTATTTATTCAATTGC+TGG + chr1_2:5081669-5081688 Msa0051040:intron 15.0%
!! TTATTTATAATATAGGTACA+TGG + chr1_2:5081760-5081779 Msa0051040:intron 15.0%
!! TGTCCTTATAATTAAAAATA+TGG - chr1_2:5082200-5082219 None:intergenic 15.0%
!! AAAAAAAACTTAAATCAGAA+GGG - chr1_2:5082524-5082543 None:intergenic 15.0%
!! TAAAAAAAACTTAAATCAGA+AGG - chr1_2:5082525-5082544 None:intergenic 15.0%
!! GTAAAATCTTAAATTTGAAT+TGG + chr1_2:5082556-5082575 Msa0051040:intron 15.0%
!!! TTTGAAATTTTTTAGCAAAT+TGG + chr1_2:5082826-5082845 Msa0051040:intron 15.0%
!!! TGTTTGTAATTTTTTTTCAA+GGG + chr1_2:5082877-5082896 Msa0051040:intron 15.0%
!! TAAATAAAAAAATTGTCAGT+TGG + chr1_2:5083073-5083092 Msa0051040:intron 15.0%
!!! CTTGTTACAAATTTTTTATT+TGG - chr1_2:5084139-5084158 None:intergenic 15.0%
!! TTGCAAAATTTATACTTTAA+AGG + chr1_2:5084299-5084318 Msa0051040:intron 15.0%
!! GTAAAATAAGCAAATAAAAA+AGG + chr1_2:5085271-5085290 Msa0051040:intron 15.0%
!!! GATTAGAAATTTTAAAATAG+AGG + chr1_2:5085491-5085510 Msa0051040:intron 15.0%
!! AATTTCAAACATTTATTTAC+AGG + chr1_2:5086715-5086734 Msa0051040:intron 15.0%
!! AAAAAATTGTGTTGAAATAA+CGG - chr1_2:5086927-5086946 None:intergenic 15.0%
!! ATAAAATGTATAATTCTTCA+TGG + chr1_2:5086953-5086972 Msa0051040:intron 15.0%
!!! CATCTTTTAAAAATATCAAA+AGG - chr1_2:5087890-5087909 None:intergenic 15.0%
!!! TATGAAGATATCATTTTATA+AGG - chr1_2:5088842-5088861 None:intergenic 15.0%
!!! ATAATAAGAGATATTTTTCT+AGG - chr1_2:5089415-5089434 None:intergenic 15.0%
!!! TATAATTTTTCCATCTATTT+TGG + chr1_2:5089774-5089793 Msa0051040:intron 15.0%
!! TCAGAATTGTTAATTTAAAA+TGG - chr1_2:5089802-5089821 None:intergenic 15.0%
!!! ATTTTAAATTAACAATTCTG+AGG + chr1_2:5089801-5089820 Msa0051040:intron 15.0%
!!! AAATATTGACTTTTTAAAGT+AGG - chr1_2:5089828-5089847 None:intergenic 15.0%
!! TTTAAATATATGATGAAAGT+TGG + chr1_2:5090179-5090198 Msa0051040:intron 15.0%
!! TTAAATATATGATGAAAGTT+GGG + chr1_2:5090180-5090199 Msa0051040:intron 15.0%
!! ATTGTAAATTAAAACATGTT+GGG + chr1_2:5092611-5092630 Msa0051040:intron 15.0%
!!! ATTTTTTTGTAAATACTTCT+AGG + chr1_2:5092660-5092679 Msa0051040:intron 15.0%
!!! CTAAACAGTTATTATTTCTT+AGG - chr1_2:5078584-5078603 None:intergenic 20.0%
!! CTAAGAAATAATAACTGTTT+AGG + chr1_2:5078582-5078601 Msa0051040:intron 20.0%
!! TTAACAACTTACTATCAATT+TGG - chr1_2:5079124-5079143 None:intergenic 20.0%
!! ATAGTAAGTTGTTAAAATAC+AGG + chr1_2:5079129-5079148 Msa0051040:intron 20.0%
!! TAGTAAGTTGTTAAAATACA+GGG + chr1_2:5079130-5079149 Msa0051040:intron 20.0%
!!! TTTTCGAAAATCTTTAACAA+CGG + chr1_2:5079570-5079589 Msa0051040:intron 20.0%
!!! GAAAGTGATTTTGTTTTATA+AGG + chr1_2:5079680-5079699 Msa0051040:intron 20.0%
!! TAATAATAACTTACTATGCA+TGG + chr1_2:5080721-5080740 Msa0051040:intron 20.0%
!! GATTTACTCAAATTAAATCA+GGG - chr1_2:5080972-5080991 None:intergenic 20.0%
!! TAGATTATAGATGTCTTAAT+TGG + chr1_2:5081037-5081056 Msa0051040:intron 20.0%
!!! ACATATTTTGACAATTTTTG+TGG - chr1_2:5081126-5081145 None:intergenic 20.0%
!! AAAAGTTAATGAGGTTAATT+TGG - chr1_2:5081208-5081227 None:intergenic 20.0%
!!! CAAAAAATGACAATTGTTTT+AGG + chr1_2:5081340-5081359 Msa0051040:intron 20.0%
!! ATTAAGTCCTTTAAATTCTA+GGG + chr1_2:5081692-5081711 Msa0051040:intron 20.0%
!! TCAGATTAATTAAAAAAGAG+TGG - chr1_2:5082299-5082318 None:intergenic 20.0%
!!! TGATATTTTAGTATCTATCA+AGG + chr1_2:5082787-5082806 Msa0051040:intron 20.0%
!!! GTGTTTGTAATTTTTTTTCA+AGG + chr1_2:5082876-5082895 Msa0051040:intron 20.0%
!! AGTAATACCTCATTTATTAA+AGG - chr1_2:5083269-5083288 None:intergenic 20.0%
!! TAATAACAATCAAACAAAAG+TGG - chr1_2:5083341-5083360 None:intergenic 20.0%
!!! AAAATTAAGAAGTACAAAAC+TGG + chr1_2:5083446-5083465 Msa0051040:intron 20.0%
!! ATATATTGCATAGTGTATTT+AGG - chr1_2:5083686-5083705 None:intergenic 20.0%
!!! TGTAAGATTTAAGATATTAC+AGG - chr1_2:5083803-5083822 None:intergenic 20.0%
!! TTATTATCATAAATGTGAAG+TGG - chr1_2:5083975-5083994 None:intergenic 20.0%
!! TGATAATAAATAAACACCAA+AGG + chr1_2:5083986-5084005 Msa0051040:intron 20.0%
!! ATATTATCCTTATTAACCTT+TGG - chr1_2:5084005-5084024 None:intergenic 20.0%
!!! AGCATTTTTTATTTGTATGA+GGG + chr1_2:5084890-5084909 Msa0051040:intron 20.0%
!! CAAAAGGAAGATATTAAAAA+GGG - chr1_2:5085306-5085325 None:intergenic 20.0%
!! TCAAAAGGAAGATATTAAAA+AGG - chr1_2:5085307-5085326 None:intergenic 20.0%
!!! TACTTTTTTGTTTGTTTTGA+TGG + chr1_2:5085520-5085539 Msa0051040:intron 20.0%
!!! AAATTGTATCTAATTTTAGC+TGG + chr1_2:5085674-5085693 Msa0051040:intron 20.0%
!! ATCATTAAAATAAATAAGCC+AGG - chr1_2:5085709-5085728 None:intergenic 20.0%
!!! TTTCTACAATTTTAATTGGT+TGG + chr1_2:5085958-5085977 Msa0051040:intron 20.0%
!! AATCAAAATAGATGACTTTA+AGG - chr1_2:5086039-5086058 None:intergenic 20.0%
!!! AATTAAAATCTACTTTTGTC+AGG + chr1_2:5086105-5086124 Msa0051040:CDS 20.0%
!! AATTCTTGGATTGAATTTAT+TGG + chr1_2:5086244-5086263 Msa0051040:intron 20.0%
!!! TGATATTTTTAAAAGATGAG+AGG + chr1_2:5087892-5087911 Msa0051040:intron 20.0%
!!! GATATTTTTAAAAGATGAGA+GGG + chr1_2:5087893-5087912 Msa0051040:intron 20.0%
!!! TTTTCTTTAGAAATTATCGT+GGG - chr1_2:5088135-5088154 None:intergenic 20.0%
!!! ATTTTCTTTAGAAATTATCG+TGG - chr1_2:5088136-5088155 None:intergenic 20.0%
!! ATCTTGAGATATACAAAATA+TGG + chr1_2:5088299-5088318 Msa0051040:intron 20.0%
!! TTCTATATACAAAAAGACAT+AGG + chr1_2:5088651-5088670 Msa0051040:intron 20.0%
!!! GTTTTCCAATTAAATGAATT+GGG - chr1_2:5089171-5089190 None:intergenic 20.0%
!!! AGTTTTCCAATTAAATGAAT+TGG - chr1_2:5089172-5089191 None:intergenic 20.0%
!!! TCATTTAATTGGAAAACTTT+TGG + chr1_2:5089174-5089193 Msa0051040:intron 20.0%
!! ATCAAATTGAAAGAAATGAA+CGG + chr1_2:5089219-5089238 Msa0051040:CDS 20.0%
!! ACAGCTAATTATATAAAGTT+TGG + chr1_2:5089378-5089397 Msa0051040:intron 20.0%
!!! ATTATATAAAGTTTGGAACA+TGG + chr1_2:5089385-5089404 Msa0051040:intron 20.0%
!! TATCTTTAATGAATACAAGA+TGG - chr1_2:5089458-5089477 None:intergenic 20.0%
!! ATAAATAAACTTCACTCAAA+AGG - chr1_2:5089600-5089619 None:intergenic 20.0%
!! TAAATATATGATGAAAGTTG+GGG + chr1_2:5090181-5090200 Msa0051040:intron 20.0%
!!! TTACAAATTTTGTATATGCT+TGG - chr1_2:5090444-5090463 None:intergenic 20.0%
!! TGAGAAAAAGATGAAAAATA+GGG - chr1_2:5091237-5091256 None:intergenic 20.0%
!! TTGAGAAAAAGATGAAAAAT+AGG - chr1_2:5091238-5091257 None:intergenic 20.0%
!!! AAAAAAAGTGATAATGAGTT+GGG - chr1_2:5091289-5091308 None:intergenic 20.0%
!!! AAAAAAAAGTGATAATGAGT+TGG - chr1_2:5091290-5091309 None:intergenic 20.0%
!! TTATACAAGAATTCTAGATA+TGG - chr1_2:5091458-5091477 None:intergenic 20.0%
!! CTTAAAGTAAAATTCCTTAT+AGG + chr1_2:5091525-5091544 Msa0051040:intron 20.0%
!! TAAAAAACATACATCCTATA+AGG - chr1_2:5091542-5091561 None:intergenic 20.0%
!!! TAGAATATTTTAGGATTTTC+AGG - chr1_2:5091707-5091726 None:intergenic 20.0%
!! TATTTAAAGAAGAAAAGAGT+CGG - chr1_2:5091813-5091832 None:intergenic 20.0%
!! TAACTGAATTACTGTAAATA+AGG - chr1_2:5092020-5092039 None:intergenic 20.0%
!! TTACAGTAATTCAGTTAATA+AGG + chr1_2:5092023-5092042 Msa0051040:intron 20.0%
!!! CTAAGATAAATATGCAATTT+TGG + chr1_2:5092082-5092101 Msa0051040:intron 20.0%
!! AATAGTTTCACCATATTATT+CGG - chr1_2:5092216-5092235 None:intergenic 20.0%
!! GATTGTAAATTAAAACATGT+TGG + chr1_2:5092610-5092629 Msa0051040:intron 20.0%
!! ACAAAAAAAAGATTAGAAGA+TGG - chr1_2:5092923-5092942 None:intergenic 20.0%
!! TCATTTTCTCAAATAACTAC+CGG - chr1_2:5078428-5078447 None:intergenic 25.0%
!! GTTTTATAATGCATAAGCTA+TGG + chr1_2:5078604-5078623 Msa0051040:intron 25.0%
!!! TACATCTCTAGAATCAAATA+TGG - chr1_2:5078890-5078909 None:intergenic 25.0%
! ACTCTAATAAAATGTCAAGT+TGG - chr1_2:5079191-5079210 None:intergenic 25.0%
! AACGGATAAAACTTTCAAAA+AGG + chr1_2:5079588-5079607 Msa0051040:intron 25.0%
! ACGGATAAAACTTTCAAAAA+GGG + chr1_2:5079589-5079608 Msa0051040:intron 25.0%
!!! TGATTTTGTTTTATAAGGGA+TGG + chr1_2:5079685-5079704 Msa0051040:intron 25.0%
! GAAATTTAACAAATGATCAC+AGG - chr1_2:5079753-5079772 None:intergenic 25.0%
! TTTCACATTTCTGTTATTGT+TGG + chr1_2:5079769-5079788 Msa0051040:intron 25.0%
! CCAAATAAAAGAGAATAAAG+GGG - chr1_2:5079900-5079919 None:intergenic 25.0%
! CCCAAATAAAAGAGAATAAA+GGG - chr1_2:5079901-5079920 None:intergenic 25.0%
!!! CCCTTTATTCTCTTTTATTT+GGG + chr1_2:5079898-5079917 Msa0051040:intron 25.0%
! TCCCAAATAAAAGAGAATAA+AGG - chr1_2:5079902-5079921 None:intergenic 25.0%
! ACAAGAAACTAGTTAATAGA+AGG - chr1_2:5080072-5080091 None:intergenic 25.0%
! AGCATAAGATCTTTCATTTA+TGG - chr1_2:5080192-5080211 None:intergenic 25.0%
! AATTCAAGAAGCAAATGATT+AGG - chr1_2:5080304-5080323 None:intergenic 25.0%
!! TCTAAGAGTGTATAATTTAG+TGG + chr1_2:5080436-5080455 Msa0051040:intron 25.0%
!!! TGTTTTGAAATTTTGAGTAG+AGG + chr1_2:5080817-5080836 Msa0051040:intron 25.0%
!!! GTTTTGAAATTTTGAGTAGA+GGG + chr1_2:5080818-5080837 Msa0051040:intron 25.0%
! CACTTAAAAACATCAAAACA+AGG - chr1_2:5080881-5080900 None:intergenic 25.0%
!!! TGTTTTGATGTTTTTAAGTG+AGG + chr1_2:5080881-5080900 Msa0051040:intron 25.0%
! AATTTCTAACTCTCAAGTAA+GGG - chr1_2:5080927-5080946 None:intergenic 25.0%
! TAATTTCTAACTCTCAAGTA+AGG - chr1_2:5080928-5080947 None:intergenic 25.0%
! GGATTTACTCAAATTAAATC+AGG - chr1_2:5080973-5080992 None:intergenic 25.0%
!! TTTTGACAATTTTTGTGGAA+TGG - chr1_2:5081121-5081140 None:intergenic 25.0%
!! ATGTCATTTCACACAAATTA+AGG + chr1_2:5081142-5081161 Msa0051040:intron 25.0%
!!! TATGACTTAGAAGGTATTAT+TGG + chr1_2:5081290-5081309 Msa0051040:intron 25.0%
! TGACAATTAATATGAGACAA+AGG + chr1_2:5081383-5081402 Msa0051040:intron 25.0%
! GACAATTAATATGAGACAAA+GGG + chr1_2:5081384-5081403 Msa0051040:intron 25.0%
! CTTTGACTCAAATGATATTA+AGG + chr1_2:5081601-5081620 Msa0051040:intron 25.0%
! GATTAAGTCCTTTAAATTCT+AGG + chr1_2:5081691-5081710 Msa0051040:intron 25.0%
! TTTGGCTAGAAATTGTATAA+AGG - chr1_2:5081738-5081757 None:intergenic 25.0%
!!! TAAGGGTATAACTACAATTT+TGG - chr1_2:5081805-5081824 None:intergenic 25.0%
! AATTGTAGTTATACCCTTAT+TGG + chr1_2:5081806-5081825 Msa0051040:intron 25.0%
! ATTGTAGTTATACCCTTATT+GGG + chr1_2:5081807-5081826 Msa0051040:intron 25.0%
! AAACATTTATCTAATGCCAA+AGG - chr1_2:5081887-5081906 None:intergenic 25.0%
!!! GGTGGTCAAAATTTTAATAA+GGG + chr1_2:5082124-5082143 Msa0051040:intron 25.0%
! TTAGTCCATAAAACATTACA+CGG - chr1_2:5082166-5082185 None:intergenic 25.0%
! ATAGCATGTCTATATATTTG+TGG + chr1_2:5082268-5082287 Msa0051040:intron 25.0%
! TAAAATTATAGGACATAGCA+TGG - chr1_2:5082602-5082621 None:intergenic 25.0%
!! AATTGGCATTTTCAATTCTT+AGG + chr1_2:5082843-5082862 Msa0051040:intron 25.0%
!! ATTGGCATTTTCAATTCTTA+GGG + chr1_2:5082844-5082863 Msa0051040:intron 25.0%
!!! TTTTTTTTCAAGGGTATCTT+TGG + chr1_2:5082886-5082905 Msa0051040:intron 25.0%
!!! TTTTTTTCAAGGGTATCTTT+GGG + chr1_2:5082887-5082906 Msa0051040:intron 25.0%
!! TAATATTTTCTCAAGAGTGA+AGG - chr1_2:5082913-5082932 None:intergenic 25.0%
!!! CCAGAAAATTTTGATGATAA+GGG - chr1_2:5082950-5082969 None:intergenic 25.0%
!!! TCCAGAAAATTTTGATGATA+AGG - chr1_2:5082951-5082970 None:intergenic 25.0%
! ACATATGAATTCTCTAAACT+AGG - chr1_2:5082999-5083018 None:intergenic 25.0%
!! ATTAAGATTTTCTAATGTGC+AGG + chr1_2:5083141-5083160 Msa0051040:intron 25.0%
!! ATTTTTAATGATCTCCAAGT+TGG - chr1_2:5083380-5083399 None:intergenic 25.0%
! TCAATTCTTGTTGCAAATTT+GGG - chr1_2:5083427-5083446 None:intergenic 25.0%
! TTCAATTCTTGTTGCAAATT+TGG - chr1_2:5083428-5083447 None:intergenic 25.0%
!! CATCTTGAATGATCATATTT+TGG - chr1_2:5083489-5083508 None:intergenic 25.0%
! AAACTAAAGCTAGATTGATT+AGG + chr1_2:5083526-5083545 Msa0051040:intron 25.0%
! TAAGAACTGTAAAAGATAGA+GGG + chr1_2:5083556-5083575 Msa0051040:intron 25.0%
! TTGACCTTTATATTGTTAGA+TGG + chr1_2:5083624-5083643 Msa0051040:intron 25.0%
! TCATCCATCTAACAATATAA+AGG - chr1_2:5083631-5083650 None:intergenic 25.0%
! TTATATTGTTAGATGGATGA+TGG + chr1_2:5083631-5083650 Msa0051040:intron 25.0%
!! TTGAAAATGACACTCTTTTT+GGG - chr1_2:5083872-5083891 None:intergenic 25.0%
!! ATTGAAAATGACACTCTTTT+TGG - chr1_2:5083873-5083892 None:intergenic 25.0%
! TAACTAGACAATACAATTGA+GGG - chr1_2:5083920-5083939 None:intergenic 25.0%
! TTAACTAGACAATACAATTG+AGG - chr1_2:5083921-5083940 None:intergenic 25.0%
! GAAGTGGAAAATAATGATTT+GGG - chr1_2:5083959-5083978 None:intergenic 25.0%
! TGAAGTGGAAAATAATGATT+TGG - chr1_2:5083960-5083979 None:intergenic 25.0%
! ATAAACACCAAAGGTTAATA+AGG + chr1_2:5083995-5084014 Msa0051040:intron 25.0%
! GATTAAGAAAAGATGACAAA+TGG - chr1_2:5084052-5084071 None:intergenic 25.0%
!! TTTTCTTAATCTGTGTGAAA+TGG + chr1_2:5084061-5084080 Msa0051040:intron 25.0%
! GTATAACAGAGAAAACAAAA+GGG - chr1_2:5084680-5084699 None:intergenic 25.0%
! AGTATAACAGAGAAAACAAA+AGG - chr1_2:5084681-5084700 None:intergenic 25.0%
! TATTTCCATTTCTGTTCTTA+AGG - chr1_2:5084746-5084765 None:intergenic 25.0%
!!! TCTTTCTTTCAGTTTTAAAC+TGG - chr1_2:5084834-5084853 None:intergenic 25.0%
!!! GAGCATTTTTTATTTGTATG+AGG + chr1_2:5084889-5084908 Msa0051040:intron 25.0%
!!! GCATTTTTTATTTGTATGAG+GGG + chr1_2:5084891-5084910 Msa0051040:intron 25.0%
! AGAGTAAAATTCTCGTATTA+AGG + chr1_2:5085000-5085019 Msa0051040:intron 25.0%
! GAGTAAAATTCTCGTATTAA+GGG + chr1_2:5085001-5085020 Msa0051040:intron 25.0%
! TAGATACAATTTACCGATAA+GGG - chr1_2:5085666-5085685 None:intergenic 25.0%
! TTAGATACAATTTACCGATA+AGG - chr1_2:5085667-5085686 None:intergenic 25.0%
!!! TTATTTTAATGATGCCTTTG+TGG + chr1_2:5085716-5085735 Msa0051040:intron 25.0%
!!! TATTTTAATGATGCCTTTGT+GGG + chr1_2:5085717-5085736 Msa0051040:intron 25.0%
!!! AATTGAGAGTACTATGAATT+TGG + chr1_2:5085985-5086004 Msa0051040:intron 25.0%
!!! ATTGAGAGTACTATGAATTT+GGG + chr1_2:5085986-5086005 Msa0051040:intron 25.0%
!!! TGATAAAAGTTACTTTTCTC+AGG + chr1_2:5086184-5086203 Msa0051040:CDS 25.0%
!!! AATCGTTACTTTTGAATTCT+TGG + chr1_2:5086230-5086249 Msa0051040:intron 25.0%
! AAGATAAAAAAAGCAAGTTG+TGG - chr1_2:5086606-5086625 None:intergenic 25.0%
!!! ATGCTTTGCTTTTTATGTTT+TGG + chr1_2:5086671-5086690 Msa0051040:intron 25.0%
! TTTATTGAGTGAAATCAATG+TGG - chr1_2:5087298-5087317 None:intergenic 25.0%
! CATTAGATATAACTTCAAAG+AGG - chr1_2:5087354-5087373 None:intergenic 25.0%
! AAAACCTTGTTGAATGTTTA+TGG - chr1_2:5087411-5087430 None:intergenic 25.0%
! TTAATCTAAATCTCCTGTAA+TGG - chr1_2:5087618-5087637 None:intergenic 25.0%
! TTAAACAGAGGTTTATTGTA+TGG + chr1_2:5087634-5087653 Msa0051040:intron 25.0%
!!! CAGAATTTTTTCCTACAAAA+TGG - chr1_2:5087774-5087793 None:intergenic 25.0%
!! TGGAAGAAGTTATTTCATTA+AGG + chr1_2:5088070-5088089 Msa0051040:intron 25.0%
! AAAATATTTAGAAGCCAAGT+GGG + chr1_2:5088151-5088170 Msa0051040:intron 25.0%
!!! GATTGTTTGAGTTCATTTTT+GGG - chr1_2:5088282-5088301 None:intergenic 25.0%
!!! AGATTGTTTGAGTTCATTTT+TGG - chr1_2:5088283-5088302 None:intergenic 25.0%
! ATATACAAAATATGGACAGA+GGG + chr1_2:5088307-5088326 Msa0051040:intron 25.0%
! ATACAAAAGTCCAATAATGT+TGG - chr1_2:5088795-5088814 None:intergenic 25.0%
! ATCTTTATAGCTGTAAAATC+TGG - chr1_2:5088895-5088914 None:intergenic 25.0%
! AAGATGCTTTATATGATTTC+AGG + chr1_2:5088910-5088929 Msa0051040:intron 25.0%
! AATAGTCTTCTTCAATATAC+CGG - chr1_2:5089114-5089133 None:intergenic 25.0%
! ACTAACCCAATTCATTTAAT+TGG + chr1_2:5089163-5089182 Msa0051040:intron 25.0%
! GTTCATTTCTTTCAATTTGA+TGG - chr1_2:5089220-5089239 None:intergenic 25.0%
! AAGAGGAAAAGTAGAAAATA+TGG - chr1_2:5089294-5089313 None:intergenic 25.0%
! AAAAGAACATCCTAATTCTT+TGG - chr1_2:5089326-5089345 None:intergenic 25.0%
! CTTTATATAATTAGCTGTGA+AGG - chr1_2:5089376-5089395 None:intergenic 25.0%
!! TACATTTTTGTTCTAGTACT+CGG + chr1_2:5089487-5089506 Msa0051040:intron 25.0%
! TAATCCATTTCATGTTGTTA+TGG - chr1_2:5089716-5089735 None:intergenic 25.0%
! TGAGACACTTAATATTTGTA+AGG + chr1_2:5089941-5089960 Msa0051040:CDS 25.0%
! ATCAAATCAAATGGATATCA+AGG - chr1_2:5089973-5089992 None:intergenic 25.0%
! GAATCACTTACAAAAAAAAC+AGG - chr1_2:5090488-5090507 None:intergenic 25.0%
!!! TACTGTCTTGGTATTTTTAT+GGG + chr1_2:5090539-5090558 Msa0051040:intron 25.0%
! CATTTAGTAATAGAGTAAAC+AGG - chr1_2:5090629-5090648 None:intergenic 25.0%
! ATCGAGAAAATTATAGTAGT+TGG - chr1_2:5090729-5090748 None:intergenic 25.0%
!! TCAATCTACTGATTAACTAT+TGG + chr1_2:5090851-5090870 Msa0051040:intron 25.0%
! TTAACTATTGGCATAATGTT+TGG + chr1_2:5090863-5090882 Msa0051040:intron 25.0%
!!! TGTTTGTGATATTTTTTCCA+AGG - chr1_2:5090916-5090935 None:intergenic 25.0%
! AGAAAAATATCTGCATACTT+TGG - chr1_2:5090942-5090961 None:intergenic 25.0%
! AGTATATGATCATGCTAATA+TGG - chr1_2:5091196-5091215 None:intergenic 25.0%
! AGAAAAAGATGAAAAATAGG+GGG - chr1_2:5091235-5091254 None:intergenic 25.0%
! GAGAAAAAGATGAAAAATAG+GGG - chr1_2:5091236-5091255 None:intergenic 25.0%
! AGAATTCTTGTATAACAAAC+AGG + chr1_2:5091463-5091482 Msa0051040:intron 25.0%
! AAGTTGTACTTATTCCTTAT+TGG + chr1_2:5091982-5092001 Msa0051040:intron 25.0%
!! TGTAAATAAGGTATCTTAGT+TGG - chr1_2:5092008-5092027 None:intergenic 25.0%
!! ATTTTGGATACACATGTAAA+AGG + chr1_2:5092098-5092117 Msa0051040:intron 25.0%
! ACATGTAAAAGGCAATTAAT+TGG + chr1_2:5092109-5092128 Msa0051040:intron 25.0%
! AATGTGAGATATCATTCAAA+TGG - chr1_2:5092333-5092352 None:intergenic 25.0%
!! TTAGAAATCCATTTTCACAT+TGG - chr1_2:5092389-5092408 None:intergenic 25.0%
!! TCTAATATGCTGTATTTTGT+TGG + chr1_2:5092404-5092423 Msa0051040:intron 25.0%
!! CTAATATGCTGTATTTTGTT+GGG + chr1_2:5092405-5092424 Msa0051040:intron 25.0%
!!! TTACTCAGGTATTGAAATTT+AGG - chr1_2:5092447-5092466 None:intergenic 25.0%
!!! AAGCATCAGCAATTTATTTT+GGG - chr1_2:5092509-5092528 None:intergenic 25.0%
!! ATTTCTTTTACAAGTTGCTT+AGG + chr1_2:5092536-5092555 Msa0051040:intron 25.0%
TCTCAAAGTTTCTTTCAGAT+CGG + chr1_2:5078048-5078067 Msa0051040:five_prime_UTR 30.0%
GCATAAGCAAAAGTGAAATT+AGG - chr1_2:5078281-5078300 None:intergenic 30.0%
TTGACTGTTATTACATGTGT+CGG + chr1_2:5078453-5078472 Msa0051040:intron 30.0%
ATTTGACGATGAAATGTAGA+AGG + chr1_2:5078532-5078551 Msa0051040:intron 30.0%
! ACATACATTTAGGGTTTGTT+TGG - chr1_2:5078846-5078865 None:intergenic 30.0%
ACAAACCCTAAATGTATGTT+TGG + chr1_2:5078847-5078866 Msa0051040:intron 30.0%
TGGAACCAAACATACATTTA+GGG - chr1_2:5078855-5078874 None:intergenic 30.0%
! GAGACTAAATTGATAGTTAG+TGG + chr1_2:5079085-5079104 Msa0051040:intron 30.0%
ACAGTAAGTGGTTAAGTATA+GGG + chr1_2:5079164-5079183 Msa0051040:intron 30.0%
! TTTGAAATAGTCGTAATCTC+AGG + chr1_2:5079221-5079240 Msa0051040:intron 30.0%
TTGAAATAGTCGTAATCTCA+GGG + chr1_2:5079222-5079241 Msa0051040:intron 30.0%
! AAATCAGTCTTTAACTTTGC+AGG - chr1_2:5079264-5079283 None:intergenic 30.0%
TGCAAAGTTAAAGACTGATT+TGG + chr1_2:5079263-5079282 Msa0051040:intron 30.0%
!! AAAGTTAAAGACTGATTTGG+CGG + chr1_2:5079266-5079285 Msa0051040:intron 30.0%
! ATTTTTGTGAGATAGCTAGT+TGG + chr1_2:5079328-5079347 Msa0051040:intron 30.0%
! GACTTGTGATTGATTTCATT+TGG + chr1_2:5079720-5079739 Msa0051040:intron 30.0%
ATTTCCTACAGCATTAACAA+AGG + chr1_2:5079804-5079823 Msa0051040:intron 30.0%
TTTCCTACAGCATTAACAAA+GGG + chr1_2:5079805-5079824 Msa0051040:intron 30.0%
!!! TCGAGTTTTGAAGTATTCTA+CGG + chr1_2:5079849-5079868 Msa0051040:CDS 30.0%
AATAAAAGAGAATAAAGGGG+TGG - chr1_2:5079897-5079916 None:intergenic 30.0%
! CCCCTTTATTCTCTTTTATT+TGG + chr1_2:5079897-5079916 Msa0051040:intron 30.0%
ATGAAAAACAACAGTCAAAG+AGG - chr1_2:5080012-5080031 None:intergenic 30.0%
ATGAATGCATATGTCTTGTA+GGG + chr1_2:5080325-5080344 Msa0051040:intron 30.0%
!! ACCATCTCTAAAGATGTTTT+GGG + chr1_2:5080546-5080565 Msa0051040:CDS 30.0%
!! TAAAGAAGCACTTATAAGAC+TGG - chr1_2:5080646-5080665 None:intergenic 30.0%
TATTCATTAGAACAGAACCA+CGG - chr1_2:5080680-5080699 None:intergenic 30.0%
!!! TGTTTTTAAGTGAGGAAAGA+AGG + chr1_2:5080889-5080908 Msa0051040:intron 30.0%
TCAGTGGAAAATAATACCTT+CGG + chr1_2:5081253-5081272 Msa0051040:intron 30.0%
TACACACAATATGACTTAGA+AGG + chr1_2:5081281-5081300 Msa0051040:intron 30.0%
TACGATTAGTAAGAATATGC+TGG + chr1_2:5081633-5081652 Msa0051040:intron 30.0%
ATAATATAGGTACATGGACA+AGG + chr1_2:5081766-5081785 Msa0051040:intron 30.0%
TCCCTACCTTCTATAAAAAT+GGG + chr1_2:5082103-5082122 Msa0051040:intron 30.0%
!! ACCCATTTTTATAGAAGGTA+GGG - chr1_2:5082107-5082126 None:intergenic 30.0%
!! GGGTGGTCAAAATTTTAATA+AGG + chr1_2:5082123-5082142 Msa0051040:intron 30.0%
! AAGATCCGTGTAATGTTTTA+TGG + chr1_2:5082158-5082177 Msa0051040:intron 30.0%
! GATCAGTTTCTTTTCAATAG+TGG + chr1_2:5082336-5082355 Msa0051040:intron 30.0%
!!! TTTTTTTCCCACAAGACTAA+TGG + chr1_2:5082425-5082444 Msa0051040:intron 30.0%
!!! TTTTTTCCCACAAGACTAAT+GGG + chr1_2:5082426-5082445 Msa0051040:intron 30.0%
! CCCTTATCATCAAAATTTTC+TGG + chr1_2:5082947-5082966 Msa0051040:intron 30.0%
! TAAACTAGGAAGTATGGATA+CGG - chr1_2:5082985-5083004 None:intergenic 30.0%
ATTCTCTAAACTAGGAAGTA+TGG - chr1_2:5082991-5083010 None:intergenic 30.0%
TTCTTTGATATGATCCAACT+TGG + chr1_2:5083363-5083382 Msa0051040:intron 30.0%
CTTGGAGATCATTAAAAATG+AGG + chr1_2:5083381-5083400 Msa0051040:intron 30.0%
AAATTTGGGTACAAGTTGTA+CGG - chr1_2:5083413-5083432 None:intergenic 30.0%
CTAAGAACTGTAAAAGATAG+AGG + chr1_2:5083555-5083574 Msa0051040:intron 30.0%
! AAAGATAGAGGGTGTATAAT+AGG + chr1_2:5083567-5083586 Msa0051040:intron 30.0%
! AAGATAGAGGGTGTATAATA+GGG + chr1_2:5083568-5083587 Msa0051040:intron 30.0%
TATAATAGGGTGAACAAACA+GGG + chr1_2:5083581-5083600 Msa0051040:intron 30.0%
AACTAGACAATACAATTGAG+GGG - chr1_2:5083919-5083938 None:intergenic 30.0%
TCAAATGTGACAGTTATTGA+GGG + chr1_2:5084084-5084103 Msa0051040:intron 30.0%
GCTTAAAGCTTAATATGCTT+TGG + chr1_2:5084158-5084177 Msa0051040:intron 30.0%
ATATATATTTAACCCTCCTC+AGG - chr1_2:5084184-5084203 None:intergenic 30.0%
AACAAATGTTGTAGACGATA+TGG + chr1_2:5084391-5084410 Msa0051040:CDS 30.0%
GTACAACTTTGTGTTTGTAA+TGG + chr1_2:5084519-5084538 Msa0051040:intron 30.0%
!! TTTGTAATGGTAGTGTTTTC+TGG + chr1_2:5084532-5084551 Msa0051040:intron 30.0%
! TGCGTTGTGTTCAATTTTTA+TGG + chr1_2:5084629-5084648 Msa0051040:intron 30.0%
TTTCTGTTCTTAAGGACTTT+GGG - chr1_2:5084738-5084757 None:intergenic 30.0%
ATTTCTGTTCTTAAGGACTT+TGG - chr1_2:5084739-5084758 None:intergenic 30.0%
AAAGTCCTTAAGAACAGAAA+TGG + chr1_2:5084738-5084757 Msa0051040:intron 30.0%
AAAATGCTCCAAATTAAGCA+GGG - chr1_2:5084878-5084897 None:intergenic 30.0%
AAAAATGCTCCAAATTAAGC+AGG - chr1_2:5084879-5084898 None:intergenic 30.0%
AGTATTCAGCTGGAATAATA+AGG + chr1_2:5084924-5084943 Msa0051040:intron 30.0%
ACTTCTATCTTCAAAACAAG+AGG - chr1_2:5085038-5085057 None:intergenic 30.0%
! AGATAAAACAGCATAATGGA+AGG - chr1_2:5085229-5085248 None:intergenic 30.0%
GGAAAGATAAAACAGCATAA+TGG - chr1_2:5085233-5085252 None:intergenic 30.0%
TACAGAAAAGAAGAGAACTT+TGG - chr1_2:5085254-5085273 None:intergenic 30.0%
!!! GTTTAGAAGCAACCATTTTT+TGG + chr1_2:5085379-5085398 Msa0051040:intron 30.0%
AAATAACAAATCTCTCATCG+AGG + chr1_2:5085594-5085613 Msa0051040:CDS 30.0%
! AAAATGTAGAAGCATGTGAA+TGG + chr1_2:5085794-5085813 Msa0051040:CDS 30.0%
TCTCTCTTTGTTAAATCATC+TGG + chr1_2:5085902-5085921 Msa0051040:intron 30.0%
TTTGTTAAATCATCTGGCTA+AGG + chr1_2:5085908-5085927 Msa0051040:intron 30.0%
!! TTGAGAGTACTATGAATTTG+GGG + chr1_2:5085987-5086006 Msa0051040:intron 30.0%
GAGAAATTACTTTGCTAGTT+TGG + chr1_2:5086145-5086164 Msa0051040:CDS 30.0%
! AAATTACTTTGCTAGTTTGG+TGG + chr1_2:5086148-5086167 Msa0051040:CDS 30.0%
CATTTGAAGGTTAAATACAG+AGG + chr1_2:5086367-5086386 Msa0051040:intron 30.0%
CATGTAATAAGGTTACTTCT+CGG - chr1_2:5086636-5086655 None:intergenic 30.0%
! ATCAGATACTGTAGAAGTAT+CGG - chr1_2:5086840-5086859 None:intergenic 30.0%
! TTACGATGATGATGATGATT+TGG + chr1_2:5087071-5087090 Msa0051040:CDS 30.0%
! TACGATGATGATGATGATTT+GGG + chr1_2:5087072-5087091 Msa0051040:CDS 30.0%
! TGATGATGATTTGGGAATTA+TGG + chr1_2:5087080-5087099 Msa0051040:CDS 30.0%
TCAAACACTTCCTCTTTAAT+TGG + chr1_2:5087215-5087234 Msa0051040:intron 30.0%
CAAACACTTCCTCTTTAATT+GGG + chr1_2:5087216-5087235 Msa0051040:intron 30.0%
TATGTTTCACCCAATTAAAG+AGG - chr1_2:5087228-5087247 None:intergenic 30.0%
GAAATGAGATCCAAATAAAG+TGG - chr1_2:5087262-5087281 None:intergenic 30.0%
AATGCCATAAACATTCAACA+AGG + chr1_2:5087404-5087423 Msa0051040:intron 30.0%
!!! CATTCAACAAGGTTTTAGTT+TGG + chr1_2:5087415-5087434 Msa0051040:intron 30.0%
ACTATTGGACTATCATCTAT+TGG - chr1_2:5087564-5087583 None:intergenic 30.0%
ACTATAACCTAAACCATTAC+AGG + chr1_2:5087602-5087621 Msa0051040:intron 30.0%
TAAATCTCCTGTAATGGTTT+AGG - chr1_2:5087612-5087631 None:intergenic 30.0%
AGGAGATTTAGATTAAACAG+AGG + chr1_2:5087622-5087641 Msa0051040:intron 30.0%
! TTCTAGTTGTTGCATAATGT+AGG + chr1_2:5087705-5087724 Msa0051040:intron 30.0%
TTCCTACAAAATGGAAGAAA+TGG - chr1_2:5087765-5087784 None:intergenic 30.0%
!! AGCTTTAAATGAATCACTTC+AGG + chr1_2:5087804-5087823 Msa0051040:CDS 30.0%
!! TTTTAAAAGATGAGAGGGTT+TGG + chr1_2:5087898-5087917 Msa0051040:intron 30.0%
TAAGGAAGAAAAGACACATA+CGG + chr1_2:5088088-5088107 Msa0051040:intron 30.0%
GAAAATATTTAGAAGCCAAG+TGG + chr1_2:5088150-5088169 Msa0051040:intron 30.0%
TTTACTCTGCTTTAACTACT+TGG - chr1_2:5088203-5088222 None:intergenic 30.0%
GATATACAAAATATGGACAG+AGG + chr1_2:5088306-5088325 Msa0051040:intron 30.0%
ACTAAGAACATAAACTACCA+TGG + chr1_2:5088417-5088436 Msa0051040:intron 30.0%
ATAAACTACCATGGTAAAGA+GGG + chr1_2:5088426-5088445 Msa0051040:intron 30.0%
CACTAATTTATCCTGGATTT+GGG - chr1_2:5088513-5088532 None:intergenic 30.0%
TCACTAATTTATCCTGGATT+TGG - chr1_2:5088514-5088533 None:intergenic 30.0%
ATCCAGGATAAATTAGTGAA+TGG + chr1_2:5088515-5088534 Msa0051040:intron 30.0%
ATCCATTCACTAATTTATCC+TGG - chr1_2:5088520-5088539 None:intergenic 30.0%
AAATTGATACCCATCACTAA+GGG - chr1_2:5088565-5088584 None:intergenic 30.0%
! CAATATTTAAAACTAAGCCC+AGG + chr1_2:5088758-5088777 Msa0051040:intron 30.0%
ATGATATCTTCATAAACTGC+AGG + chr1_2:5088848-5088867 Msa0051040:intron 30.0%
ATAACAGAACGATATCTTTC+TGG + chr1_2:5089001-5089020 Msa0051040:CDS 30.0%
CTCAATCTTCTAAATGTGTT+TGG - chr1_2:5089141-5089160 None:intergenic 30.0%
! AATATGGATCCATTTTACCT+GGG - chr1_2:5089278-5089297 None:intergenic 30.0%
! AAATATGGATCCATTTTACC+TGG - chr1_2:5089279-5089298 None:intergenic 30.0%
TCTCTTATTATTGCAGTGAA+AGG + chr1_2:5089424-5089443 Msa0051040:intron 30.0%
AATGAATACAAGATGGAGTT+GGG - chr1_2:5089451-5089470 None:intergenic 30.0%
TAATGAATACAAGATGGAGT+TGG - chr1_2:5089452-5089471 None:intergenic 30.0%
ACAAAAATCACGTATACTTC+AGG - chr1_2:5089557-5089576 None:intergenic 30.0%
TAAAATGGCTCCAAAATAGA+TGG - chr1_2:5089787-5089806 None:intergenic 30.0%
! AAATGGTTTCTCCTGATTTT+TGG + chr1_2:5089872-5089891 Msa0051040:intron 30.0%
GAACATTGAATCCAAAAATC+AGG - chr1_2:5089886-5089905 None:intergenic 30.0%
!! GATTTTTGGATTCAATGTTC+AGG + chr1_2:5089886-5089905 Msa0051040:intron 30.0%
CTCAATGCAATTAAGATGTA+TGG - chr1_2:5089925-5089944 None:intergenic 30.0%
CAGTCTACAATCAAATCAAA+TGG - chr1_2:5089982-5090001 None:intergenic 30.0%
! TGCATTTTTGCTAAAGTTGA+TGG - chr1_2:5090104-5090123 None:intergenic 30.0%
! AAAAATGCATGTCTGTTTTC+AGG + chr1_2:5090115-5090134 Msa0051040:intron 30.0%
ACAGTAGACATCATAAAAAC+AGG - chr1_2:5090525-5090544 None:intergenic 30.0%
! TTTTATGATGTCTACTGTCT+TGG + chr1_2:5090527-5090546 Msa0051040:intron 30.0%
!! CTACTGTCTTGGTATTTTTA+TGG + chr1_2:5090538-5090557 Msa0051040:intron 30.0%
! ATTTTTATCCTCTCCGTTTT+GGG - chr1_2:5090582-5090601 None:intergenic 30.0%
! TTTTTATCTGCATTCCAAAC+AGG + chr1_2:5090802-5090821 Msa0051040:intron 30.0%
TGTATTTATTTCCACCTGTT+TGG - chr1_2:5090819-5090838 None:intergenic 30.0%
TAATACAAACTAACCTCTTC+AGG - chr1_2:5091389-5091408 None:intergenic 30.0%
AAATCCAGAACGAAAAGAAA+TGG + chr1_2:5091601-5091620 Msa0051040:intron 30.0%
! TTTTCCATTTCTTTTCGTTC+TGG - chr1_2:5091608-5091627 None:intergenic 30.0%
CGAAAAGAAATGGAAAAACA+AGG + chr1_2:5091611-5091630 Msa0051040:intron 30.0%
ATGTTAAAAACCAGCTTATC+TGG + chr1_2:5091781-5091800 Msa0051040:CDS 30.0%
TGTTAAAAACCAGCTTATCT+GGG + chr1_2:5091782-5091801 Msa0051040:CDS 30.0%
ATAAGCATGCAACAATACAA+AGG - chr1_2:5091837-5091856 None:intergenic 30.0%
!!! TTTTTTTTGCTCTTCCACAT+AGG + chr1_2:5091868-5091887 Msa0051040:intron 30.0%
TTTCTTATACATCGCATTGA+TGG - chr1_2:5091903-5091922 None:intergenic 30.0%
GCATATTTATCTTAGTGCAA+AGG - chr1_2:5092077-5092096 None:intergenic 30.0%
AGTTTGACTACCGAATAATA+TGG + chr1_2:5092203-5092222 Msa0051040:intron 30.0%
! ATCTCACATTTTGTATAGTG+AGG + chr1_2:5092343-5092362 Msa0051040:intron 30.0%
! AATCCATTTTCACATTGGAA+AGG - chr1_2:5092384-5092403 None:intergenic 30.0%
! GTATTTTGTTGGGAAAGAAA+AGG + chr1_2:5092415-5092434 Msa0051040:intron 30.0%
TCTTTCAATCAAGATTACTC+AGG - chr1_2:5092461-5092480 None:intergenic 30.0%
TTGATTGAAAGATGATGTGA+AGG + chr1_2:5092469-5092488 Msa0051040:intron 30.0%
TGATTGAAAGATGATGTGAA+GGG + chr1_2:5092470-5092489 Msa0051040:intron 30.0%
!!! AGCATCAGCAATTTATTTTG+GGG - chr1_2:5092508-5092527 None:intergenic 30.0%
! CAAGCATCAGCAATTTATTT+TGG - chr1_2:5092510-5092529 None:intergenic 30.0%
CTACTGTGTAGATTTGTAAA+AGG + chr1_2:5092584-5092603 Msa0051040:intron 30.0%
GATAAGATGATCTTCTGCTT+AGG - chr1_2:5078159-5078178 None:intergenic 35.0%
ATATGTATGAAGCACAGACA+CGG + chr1_2:5078380-5078399 Msa0051040:intron 35.0%
TTTCTTAGGTGAATCAGCAT+AGG - chr1_2:5078570-5078589 None:intergenic 35.0%
GTGGAACCAAACATACATTT+AGG - chr1_2:5078856-5078875 None:intergenic 35.0%
AAATATGGTTTCTCCAAACG+TGG - chr1_2:5078875-5078894 None:intergenic 35.0%
AAATTCATCCCTGACTTTGT+CGG + chr1_2:5078967-5078986 Msa0051040:intron 35.0%
TTTAGTCTCTAGCATACTCT+CGG - chr1_2:5079074-5079093 None:intergenic 35.0%
CACAGTAAGTGGTTAAGTAT+AGG + chr1_2:5079163-5079182 Msa0051040:intron 35.0%
TGAAATAGTCGTAATCTCAG+GGG + chr1_2:5079223-5079242 Msa0051040:intron 35.0%
!! GTTGGATCTTGAACTGATTT+TGG + chr1_2:5079346-5079365 Msa0051040:intron 35.0%
!!! CGAGTTTTGAAGTATTCTAC+GGG + chr1_2:5079850-5079869 Msa0051040:CDS 35.0%
! CTTGATTTTGTAGTTTCCGT+GGG + chr1_2:5079926-5079945 Msa0051040:intron 35.0%
AGATCATAAGATGAAACCCA+CGG - chr1_2:5079945-5079964 None:intergenic 35.0%
!!! CTTAGCTTGTATAGTTTTGC+AGG - chr1_2:5080103-5080122 None:intergenic 35.0%
CTGCAAAACTATACAAGCTA+AGG + chr1_2:5080101-5080120 Msa0051040:CDS 35.0%
!! GTTTTAACAAACGATCCTAG+TGG + chr1_2:5080142-5080161 Msa0051040:CDS 35.0%
AGTGTAAATGTACATCCACT+AGG - chr1_2:5080160-5080179 None:intergenic 35.0%
! TAGTGGATGTACATTTACAC+TGG + chr1_2:5080159-5080178 Msa0051040:CDS 35.0%
TACACAATGTTCTCAGTTTC+TGG + chr1_2:5080219-5080238 Msa0051040:intron 35.0%
AAGAAACGACCATCAAAGTA+GGG - chr1_2:5080273-5080292 None:intergenic 35.0%
TAAGAAACGACCATCAAAGT+AGG - chr1_2:5080274-5080293 None:intergenic 35.0%
CAAGAAGCAAATGATTAGGA+AGG - chr1_2:5080300-5080319 None:intergenic 35.0%
GATGAATGCATATGTCTTGT+AGG + chr1_2:5080324-5080343 Msa0051040:intron 35.0%
!! GACCATCTCTAAAGATGTTT+TGG + chr1_2:5080545-5080564 Msa0051040:CDS 35.0%
! ACCCAAAACATCTTTAGAGA+TGG - chr1_2:5080550-5080569 None:intergenic 35.0%
TCTTTACAATCAAATAGCCG+TGG + chr1_2:5080660-5080679 Msa0051040:intron 35.0%
! AAGAGAGATAACATGATGGA+AGG + chr1_2:5080841-5080860 Msa0051040:intron 35.0%
TTTGAATGGGAGATAAGAAG+GGG - chr1_2:5081004-5081023 None:intergenic 35.0%
GTTTGAATGGGAGATAAGAA+GGG - chr1_2:5081005-5081024 None:intergenic 35.0%
TGTTTGAATGGGAGATAAGA+AGG - chr1_2:5081006-5081025 None:intergenic 35.0%
! CATTTTGAACTTCACATCAG+TGG + chr1_2:5081072-5081091 Msa0051040:intron 35.0%
! GACAATTTTTGTGGAATGGA+GGG - chr1_2:5081117-5081136 None:intergenic 35.0%
! TGACAATTTTTGTGGAATGG+AGG - chr1_2:5081118-5081137 None:intergenic 35.0%
TCGATATCATAAATGCTCAG+TGG + chr1_2:5081237-5081256 Msa0051040:intron 35.0%
! ATTACTCTGAGTTGAAACAG+GGG - chr1_2:5081450-5081469 None:intergenic 35.0%
! CATTACTCTGAGTTGAAACA+GGG - chr1_2:5081451-5081470 None:intergenic 35.0%
! ACATTACTCTGAGTTGAAAC+AGG - chr1_2:5081452-5081471 None:intergenic 35.0%
ACTCAGAGTAATGTGAAAGA+TGG + chr1_2:5081458-5081477 Msa0051040:CDS 35.0%
CATGAATATGTGCCCAATAA+GGG - chr1_2:5081822-5081841 None:intergenic 35.0%
ACATGAATATGTGCCCAATA+AGG - chr1_2:5081823-5081842 None:intergenic 35.0%
TATTGGGCACATATTCATGT+AGG + chr1_2:5081823-5081842 Msa0051040:intron 35.0%
TATTCATGTAGGACACTTAC+AGG + chr1_2:5081834-5081853 Msa0051040:intron 35.0%
ATTCATGTAGGACACTTACA+GGG + chr1_2:5081835-5081854 Msa0051040:intron 35.0%
GTCCCTACCTTCTATAAAAA+TGG + chr1_2:5082102-5082121 Msa0051040:intron 35.0%
!! CACCCATTTTTATAGAAGGT+AGG - chr1_2:5082108-5082127 None:intergenic 35.0%
CTACCTTCTATAAAAATGGG+TGG + chr1_2:5082106-5082125 Msa0051040:intron 35.0%
!! TGACCACCCATTTTTATAGA+AGG - chr1_2:5082112-5082131 None:intergenic 35.0%
TCCTTTCAATTACCTTAGCT+AGG + chr1_2:5082243-5082262 Msa0051040:intron 35.0%
ACCTAGCTAAGGTAATTGAA+AGG - chr1_2:5082247-5082266 None:intergenic 35.0%
! TGTCGTAAAGTTTTCTTGTG+GGG - chr1_2:5082701-5082720 None:intergenic 35.0%
! GTGTCGTAAAGTTTTCTTGT+GGG - chr1_2:5082702-5082721 None:intergenic 35.0%
! AAATTTTCTGGATTCATCCC+TGG + chr1_2:5082959-5082978 Msa0051040:intron 35.0%
ACAGAAAATGCTGAACGTAA+TGG + chr1_2:5083021-5083040 Msa0051040:intron 35.0%
! TAAAGGCTCGCTTTCTAAAA+TGG - chr1_2:5083252-5083271 None:intergenic 35.0%
AAGCGAGCCTTTAATAAATG+AGG + chr1_2:5083259-5083278 Msa0051040:CDS 35.0%
TTCAAGATGAAAAGAATCCG+TGG + chr1_2:5083500-5083519 Msa0051040:intron 35.0%
!! TCTAGCTTTAGTTTGATCCA+CGG - chr1_2:5083520-5083539 None:intergenic 35.0%
GTATAATAGGGTGAACAAAC+AGG + chr1_2:5083580-5083599 Msa0051040:intron 35.0%
TGGTTTATTGGACGAAATGT+TGG + chr1_2:5083739-5083758 Msa0051040:intron 35.0%
TTATTGGACGAAATGTTGGA+TGG + chr1_2:5083743-5083762 Msa0051040:intron 35.0%
GCAAATGCGACAATTATCAT+GGG - chr1_2:5083834-5083853 None:intergenic 35.0%
TGCAAATGCGACAATTATCA+TGG - chr1_2:5083835-5083854 None:intergenic 35.0%
ACTAGACAATACAATTGAGG+GGG - chr1_2:5083918-5083937 None:intergenic 35.0%
GACAAATGGAAGAAAGTGAA+TGG - chr1_2:5084038-5084057 None:intergenic 35.0%
GTCAAATGTGACAGTTATTG+AGG + chr1_2:5084083-5084102 Msa0051040:intron 35.0%
TTGTAGACGATATGGATGAA+TGG + chr1_2:5084399-5084418 Msa0051040:CDS 35.0%
GCACATTCAATGTTAAACTC+CGG + chr1_2:5084426-5084445 Msa0051040:CDS 35.0%
CTTGTATCCTTCTTCAATCA+AGG + chr1_2:5084480-5084499 Msa0051040:intron 35.0%
AATACAGCCTTGATTGAAGA+AGG - chr1_2:5084490-5084509 None:intergenic 35.0%
!!! TCAAGGCTGTATTTTTTCCT+TGG + chr1_2:5084497-5084516 Msa0051040:intron 35.0%
ACAAACACAAAGTTGTACCA+AGG - chr1_2:5084517-5084536 None:intergenic 35.0%
GGAATAGCTACACATTTGTT+TGG + chr1_2:5084553-5084572 Msa0051040:intron 35.0%
GTTTCTTTGTTCCTTTGTTC+AGG + chr1_2:5084575-5084594 Msa0051040:intron 35.0%
AGCATCAATAGAAATGAGGT+TGG - chr1_2:5084656-5084675 None:intergenic 35.0%
! TCCTGATATTTCTGTTTGCT+TGG + chr1_2:5084779-5084798 Msa0051040:intron 35.0%
TCCAAGCAAACAGAAATATC+AGG - chr1_2:5084783-5084802 None:intergenic 35.0%
CTGAAAGAAAGAATCTCTAG+TGG + chr1_2:5084842-5084861 Msa0051040:intron 35.0%
! AAAGAATCTCTAGTGGATCT+TGG + chr1_2:5084849-5084868 Msa0051040:intron 35.0%
! AAGAATCTCTAGTGGATCTT+GGG + chr1_2:5084850-5084869 Msa0051040:intron 35.0%
TTATTTGTATGAGGGGTTAG+CGG + chr1_2:5084898-5084917 Msa0051040:intron 35.0%
ACATCATCTCTTATCCTCTT+TGG + chr1_2:5085064-5085083 Msa0051040:intron 35.0%
! TAAAACAGCATAATGGAAGG+TGG - chr1_2:5085226-5085245 None:intergenic 35.0%
TGTTATTACGGGTTTCTATC+TGG - chr1_2:5085555-5085574 None:intergenic 35.0%
CATTTGCAAGCTGTTATTAC+GGG - chr1_2:5085566-5085585 None:intergenic 35.0%
GCATTTGCAAGCTGTTATTA+CGG - chr1_2:5085567-5085586 None:intergenic 35.0%
TAACAGCTTGCAAATGCAAT+CGG + chr1_2:5085570-5085589 Msa0051040:CDS 35.0%
GAGGTTCATTTGATGAAGAT+CGG + chr1_2:5085764-5085783 Msa0051040:CDS 35.0%
GCATAAGTGAGGTCAATATT+GGG - chr1_2:5085850-5085869 None:intergenic 35.0%
ATATAATGTAACTGACCTCC+CGG - chr1_2:5086541-5086560 None:intergenic 35.0%
ACCTTATTACATGTGAGTTC+TGG + chr1_2:5086643-5086662 Msa0051040:intron 35.0%
CCTTATTACATGTGAGTTCT+GGG + chr1_2:5086644-5086663 Msa0051040:intron 35.0%
! TAGATGCTTTTGTACTAGCA+CGG - chr1_2:5086763-5086782 None:intergenic 35.0%
CATCTAGAAATCCAACTGTT+TGG + chr1_2:5086777-5086796 Msa0051040:CDS 35.0%
! CACAATTTTTATCCCACTTC+TGG + chr1_2:5086877-5086896 Msa0051040:CDS 35.0%
! AATTTTTATCCCACTTCTGG+TGG + chr1_2:5086880-5086899 Msa0051040:CDS 35.0%
GATGAGAATGACAGTAAATC+TGG + chr1_2:5087108-5087127 Msa0051040:intron 35.0%
!!! GCCTGACTTTTTTCAAATAG+CGG + chr1_2:5087138-5087157 Msa0051040:intron 35.0%
!!! CTTTTTTCAAATAGCGGCTT+TGG + chr1_2:5087144-5087163 Msa0051040:intron 35.0%
TGAGATCCAAATAAAGTGGT+GGG - chr1_2:5087258-5087277 None:intergenic 35.0%
ATGAGATCCAAATAAAGTGG+TGG - chr1_2:5087259-5087278 None:intergenic 35.0%
CATTACATAGAACAGATTGG+AGG - chr1_2:5087462-5087481 None:intergenic 35.0%
GTGCATTACATAGAACAGAT+TGG - chr1_2:5087465-5087484 None:intergenic 35.0%
CTGTTCTATGTAATGCACAT+AGG + chr1_2:5087467-5087486 Msa0051040:intron 35.0%
AATGCACATAGGCATTCTTT+AGG + chr1_2:5087478-5087497 Msa0051040:intron 35.0%
GATGATAGTCCAATAGTTAG+AGG + chr1_2:5087567-5087586 Msa0051040:intron 35.0%
CTTCTTCTACCTCTAACTAT+TGG - chr1_2:5087579-5087598 None:intergenic 35.0%
ACTGTACGTATTGGATCAAA+TGG - chr1_2:5087668-5087687 None:intergenic 35.0%
! AACAACTAGAACCTTTTAGG+TGG - chr1_2:5087696-5087715 None:intergenic 35.0%
! TGCAACAACTAGAACCTTTT+AGG - chr1_2:5087699-5087718 None:intergenic 35.0%
! GACCATTTCTTCCATTTTGT+AGG + chr1_2:5087760-5087779 Msa0051040:intron 35.0%
TGAATCACTTCAGGATTTAC+TGG + chr1_2:5087813-5087832 Msa0051040:CDS 35.0%
!! TGTGTGATTTCTTTTTCGTG+TGG + chr1_2:5088041-5088060 Msa0051040:intron 35.0%
!! GTGTGATTTCTTTTTCGTGT+GGG + chr1_2:5088042-5088061 Msa0051040:intron 35.0%
!! TGTGATTTCTTTTTCGTGTG+GGG + chr1_2:5088043-5088062 Msa0051040:intron 35.0%
!!! TTTTGGGATTAAGACTGACA+AGG - chr1_2:5088266-5088285 None:intergenic 35.0%
CATAAACTACCATGGTAAAG+AGG + chr1_2:5088425-5088444 Msa0051040:intron 35.0%
AATTGATACCCATCACTAAG+GGG - chr1_2:5088564-5088583 None:intergenic 35.0%
GAAATTGATACCCATCACTA+AGG - chr1_2:5088566-5088585 None:intergenic 35.0%
TTCATGTATTTGCACACTTC+TGG + chr1_2:5088583-5088602 Msa0051040:intron 35.0%
TTATGTCGCAACTTTGTAGA+GGG + chr1_2:5088606-5088625 Msa0051040:intron 35.0%
CAAAAAGACATAGGATAGCA+AGG + chr1_2:5088660-5088679 Msa0051040:intron 35.0%
!! CAATAATGTTGGCCTTTGAA+AGG - chr1_2:5088784-5088803 None:intergenic 35.0%
CTTTCAAAGGCCAACATTAT+TGG + chr1_2:5088782-5088801 Msa0051040:intron 35.0%
!! CATCCTAATTCTTTGGAGTT+TGG - chr1_2:5089319-5089338 None:intergenic 35.0%
ATGAATACAAGATGGAGTTG+GGG - chr1_2:5089450-5089469 None:intergenic 35.0%
! TTTTGCAAATTGCACTGAGT+TGG + chr1_2:5089511-5089530 Msa0051040:intron 35.0%
ACAGCCATAACAACATGAAA+TGG + chr1_2:5089709-5089728 Msa0051040:intron 35.0%
AAATTTGTGTTCCTCTGCTT+TGG + chr1_2:5089849-5089868 Msa0051040:intron 35.0%
! GATTTTTATCCTCTCCGTTT+TGG - chr1_2:5090583-5090602 None:intergenic 35.0%
AATCATTGATCTCTCTTCCA+AGG + chr1_2:5090599-5090618 Msa0051040:intron 35.0%
ATCATTGATCTCTCTTCCAA+GGG + chr1_2:5090600-5090619 Msa0051040:intron 35.0%
ACAAGAATTGAGAGAATCGA+GGG - chr1_2:5090672-5090691 None:intergenic 35.0%
TACAAGAATTGAGAGAATCG+AGG - chr1_2:5090673-5090692 None:intergenic 35.0%
TACATCCTAACAGTTACTGT+GGG + chr1_2:5090751-5090770 Msa0051040:intron 35.0%
AAACACTTGCCTATTCTGAA+AGG - chr1_2:5090982-5091001 None:intergenic 35.0%
TGATAAAACTTGGCCAAAGT+GGG - chr1_2:5091137-5091156 None:intergenic 35.0%
ATGATAAAACTTGGCCAAAG+TGG - chr1_2:5091138-5091157 None:intergenic 35.0%
!! TTTGGCCAAGTTTTATCATC+AGG + chr1_2:5091139-5091158 Msa0051040:CDS 35.0%
! ATCTTTTTCTCAACCAACAC+TGG + chr1_2:5091245-5091264 Msa0051040:intron 35.0%
!!! CACTTTTTTTTTCCTTCCCT+TGG + chr1_2:5091299-5091318 Msa0051040:intron 35.0%
ACGTTCAAATTGCTTTCCAA+GGG - chr1_2:5091318-5091337 None:intergenic 35.0%
AGAGGCTATGAAGGATTAAA+AGG - chr1_2:5091418-5091437 None:intergenic 35.0%
! TTTTAATCCTTCATAGCCTC+TGG + chr1_2:5091417-5091436 Msa0051040:intron 35.0%
GTTAAAAACCAGCTTATCTG+GGG + chr1_2:5091783-5091802 Msa0051040:CDS 35.0%
AAGAACTGTTACCTTCCTTA+TGG + chr1_2:5091945-5091964 Msa0051040:CDS 35.0%
AGAACTGTTACCTTCCTTAT+GGG + chr1_2:5091946-5091965 Msa0051040:CDS 35.0%
ATTGGAAAGGCCTTCAATAT+TGG - chr1_2:5092371-5092390 None:intergenic 35.0%
! TTTTGTTGGGAAAGAAAAGG+AGG + chr1_2:5092418-5092437 Msa0051040:intron 35.0%
! TCTTTTACAAGTTGCTTAGG+TGG + chr1_2:5092539-5092558 Msa0051040:intron 35.0%
GTTGGGAAACGCTTAATTAT+AGG + chr1_2:5092628-5092647 Msa0051040:intron 35.0%
CAGATGTGAATGTCTCATTA+GGG - chr1_2:5092831-5092850 None:intergenic 35.0%
ACAGATGTGAATGTCTCATT+AGG - chr1_2:5092832-5092851 None:intergenic 35.0%
ATCGGAGAAACAACAAACTC+CGG + chr1_2:5078066-5078085 Msa0051040:five_prime_UTR 40.0%
ATCCGTGTTTCCAAAAGTCA+CGG + chr1_2:5078180-5078199 Msa0051040:CDS 40.0%
TTATTACATGTGTCGGACAC+CGG + chr1_2:5078460-5078479 Msa0051040:intron 40.0%
! CTTCTGATCAAAAGCACATC+CGG - chr1_2:5078482-5078501 None:intergenic 40.0%
! TGTATGTTTGGTTCCACGTT+TGG + chr1_2:5078859-5078878 Msa0051040:intron 40.0%
GACAAAGTCAGGGATGAATT+TGG - chr1_2:5078968-5078987 None:intergenic 40.0%
AATTCATCCCTGACTTTGTC+GGG + chr1_2:5078968-5078987 Msa0051040:intron 40.0%
GATCTGATTGACACAGTAAG+TGG + chr1_2:5079152-5079171 Msa0051040:intron 40.0%
TGTCCCTTTGTTAATGCTGT+AGG - chr1_2:5079811-5079830 None:intergenic 40.0%
!!! GTTTTGAAGTATTCTACGGG+AGG + chr1_2:5079853-5079872 Msa0051040:CDS 40.0%
! GCTTGATTTTGTAGTTTCCG+TGG + chr1_2:5079925-5079944 Msa0051040:intron 40.0%
TCACTAGCTACTCTAAGCAT+TGG - chr1_2:5079987-5080006 None:intergenic 40.0%
TAACCTTAGAAGCCAAAGTG+TGG + chr1_2:5080354-5080373 Msa0051040:CDS 40.0%
ATATTTCGCATCGTCCATTG+CGG - chr1_2:5080385-5080404 None:intergenic 40.0%
! CGATGCGAAATATTGATGAC+AGG + chr1_2:5080392-5080411 Msa0051040:CDS 40.0%
! TGATGACAGGTATTGTTGAG+AGG + chr1_2:5080405-5080424 Msa0051040:intron 40.0%
AGATGGTCAAGATGCAAAGA+AGG - chr1_2:5080533-5080552 None:intergenic 40.0%
ACATCTATACCAACGACCTT+AGG - chr1_2:5080579-5080598 None:intergenic 40.0%
TGGTATAGATGTTGTGGAGT+TGG + chr1_2:5080587-5080606 Msa0051040:CDS 40.0%
CTTACTATGCATGGAACCTT+TGG + chr1_2:5080730-5080749 Msa0051040:intron 40.0%
ATAAGACTGTGACACTCCAA+AGG - chr1_2:5080749-5080768 None:intergenic 40.0%
AGGGAAGAGAGATAACATGA+TGG + chr1_2:5080837-5080856 Msa0051040:intron 40.0%
! AGAGATAACATGATGGAAGG+AGG + chr1_2:5080844-5080863 Msa0051040:intron 40.0%
TTGAATGGGAGATAAGAAGG+GGG - chr1_2:5081003-5081022 None:intergenic 40.0%
CATCAGTGGTTAAATGCCAT+TGG + chr1_2:5081086-5081105 Msa0051040:intron 40.0%
TATTGTGTGTATCACTCCGA+AGG - chr1_2:5081272-5081291 None:intergenic 40.0%
CAGAGTAATGTGAAAGATGG+TGG + chr1_2:5081461-5081480 Msa0051040:CDS 40.0%
CCTGTGTCCCTAGAATTTAA+AGG - chr1_2:5081702-5081721 None:intergenic 40.0%
! CCTTTAAATTCTAGGGACAC+AGG + chr1_2:5081699-5081718 Msa0051040:intron 40.0%
TTCATGTAGGACACTTACAG+GGG + chr1_2:5081836-5081855 Msa0051040:intron 40.0%
GGCGGATGATAATTATGACA+GGG + chr1_2:5081857-5081876 Msa0051040:intron 40.0%
GCGGATGATAATTATGACAG+GGG + chr1_2:5081858-5081877 Msa0051040:intron 40.0%
CGGATGATAATTATGACAGG+GGG + chr1_2:5081859-5081878 Msa0051040:intron 40.0%
!! GTGTTTCCCATTAGTCTTGT+GGG - chr1_2:5082435-5082454 None:intergenic 40.0%
!! AGTGTTTCCCATTAGTCTTG+TGG - chr1_2:5082436-5082455 None:intergenic 40.0%
AGATATGAGCACGACACAAA+GGG - chr1_2:5082640-5082659 None:intergenic 40.0%
TAGATATGAGCACGACACAA+AGG - chr1_2:5082641-5082660 None:intergenic 40.0%
GTCGTGCTCATATCTAAAGA+TGG + chr1_2:5082645-5082664 Msa0051040:intron 40.0%
TAAAGATGGATCTATGTGCC+AGG + chr1_2:5082659-5082678 Msa0051040:intron 40.0%
!! GGTGTCGTAAAGTTTTCTTG+TGG - chr1_2:5082703-5082722 None:intergenic 40.0%
TCTAATGTGCAGGTATGTCA+TGG + chr1_2:5083151-5083170 Msa0051040:intron 40.0%
CTAATGTGCAGGTATGTCAT+GGG + chr1_2:5083152-5083171 Msa0051040:intron 40.0%
GACAATTATCATGGGACAGA+GGG - chr1_2:5083826-5083845 None:intergenic 40.0%
TGACAGTTATTGAGGGACAA+AGG + chr1_2:5084091-5084110 Msa0051040:intron 40.0%
GACAGTTATTGAGGGACAAA+GGG + chr1_2:5084092-5084111 Msa0051040:intron 40.0%
GACGATATGGATGAATGGTT+AGG + chr1_2:5084404-5084423 Msa0051040:CDS 40.0%
CATGAGAGAGGATATAGCAT+CGG + chr1_2:5084451-5084470 Msa0051040:CDS 40.0%
!! AGAGGATATAGCATCGGTAA+GGG + chr1_2:5084457-5084476 Msa0051040:intron 40.0%
TTTGTTCCTTTGTTCAGGCA+AGG + chr1_2:5084580-5084599 Msa0051040:intron 40.0%
GGGTAGCATCAATAGAAATG+AGG - chr1_2:5084660-5084679 None:intergenic 40.0%
!! TTAGCGGAAAAGTATTCAGC+TGG + chr1_2:5084914-5084933 Msa0051040:intron 40.0%
TATACCAAAATGCCCTGATG+AGG - chr1_2:5085104-5085123 None:intergenic 40.0%
!! AGGGCATTTTGGTATAGAGA+GGG + chr1_2:5085108-5085127 Msa0051040:intron 40.0%
TTTGGTATAGAGAGGGATTG+TGG + chr1_2:5085115-5085134 Msa0051040:intron 40.0%
TTGGTATAGAGAGGGATTGT+GGG + chr1_2:5085116-5085135 Msa0051040:intron 40.0%
! TCTGGTGTGTGAATTAGTCT+TGG + chr1_2:5085182-5085201 Msa0051040:intron 40.0%
!! CTGGTGTGTGAATTAGTCTT+GGG + chr1_2:5085183-5085202 Msa0051040:intron 40.0%
!! TGGTGTGTGAATTAGTCTTG+GGG + chr1_2:5085184-5085203 Msa0051040:intron 40.0%
!!! AAGCAACCATTTTTTGGTGC+TGG + chr1_2:5085385-5085404 Msa0051040:intron 40.0%
!!! AGCAACCATTTTTTGGTGCT+GGG + chr1_2:5085386-5085405 Msa0051040:intron 40.0%
AGCTTGATAAGCTTCTTGAG+CGG + chr1_2:5085617-5085636 Msa0051040:CDS 40.0%
TTTAGCTGGATGAACTTACC+TGG + chr1_2:5085688-5085707 Msa0051040:intron 40.0%
! TAGTTTGCAACGTGTTTGAC+AGG + chr1_2:5085742-5085761 Msa0051040:intron 40.0%
CGCATAAGTGAGGTCAATAT+TGG - chr1_2:5085851-5085870 None:intergenic 40.0%
TGTCTGCTTACTCTAAACAG+CGG + chr1_2:5086275-5086294 Msa0051040:intron 40.0%
ACGTCTTCTTCAGCATTTGA+AGG + chr1_2:5086354-5086373 Msa0051040:CDS 40.0%
CATACGCATGCAGGAATAAT+AGG - chr1_2:5086394-5086413 None:intergenic 40.0%
! TTCCTGCATGCGTATGTTTT+TGG + chr1_2:5086398-5086417 Msa0051040:intron 40.0%
AGCCTTGACAAGAATTGCTT+GGG + chr1_2:5086470-5086489 Msa0051040:CDS 40.0%
! CTGCAATAAGCTTTTCTCAG+TGG - chr1_2:5086497-5086516 None:intergenic 40.0%
CCCAGAACTCACATGTAATA+AGG - chr1_2:5086647-5086666 None:intergenic 40.0%
!! AATCCAACTGTTTGGCTTGA+AGG + chr1_2:5086785-5086804 Msa0051040:CDS 40.0%
GCCGCTATTTGAAAAAAGTC+AGG - chr1_2:5087142-5087161 None:intergenic 40.0%
TGGATCTCATTTCCAATGTG+TGG + chr1_2:5087269-5087288 Msa0051040:intron 40.0%
GGATCTCATTTCCAATGTGT+GGG + chr1_2:5087270-5087289 Msa0051040:intron 40.0%
!! CACCTATAGAAGCACTGTTA+AGG + chr1_2:5087530-5087549 Msa0051040:intron 40.0%
CTCCTTAACAGTGCTTCTAT+AGG - chr1_2:5087535-5087554 None:intergenic 40.0%
!! CTATAGAAGCACTGTTAAGG+AGG + chr1_2:5087533-5087552 Msa0051040:intron 40.0%
! TACAGTTGACTCCACCTAAA+AGG + chr1_2:5087682-5087701 Msa0051040:intron 40.0%
TCACTTCAGGATTTACTGGA+CGG + chr1_2:5087817-5087836 Msa0051040:CDS 40.0%
! AGATGAGAGGGTTTGGATTT+TGG + chr1_2:5087905-5087924 Msa0051040:intron 40.0%
!! GTGATTTCTTTTTCGTGTGG+GGG + chr1_2:5088044-5088063 Msa0051040:intron 40.0%
!! TGATTTCTTTTTCGTGTGGG+GGG + chr1_2:5088045-5088064 Msa0051040:intron 40.0%
CAGAGTAAATCTCTGACTGT+TGG + chr1_2:5088214-5088233 Msa0051040:intron 40.0%
AAGACTGACAAGGCTAAAAG+TGG - chr1_2:5088256-5088275 None:intergenic 40.0%
GAATGACTTCTTGGAACCAA+AGG - chr1_2:5088335-5088354 None:intergenic 40.0%
!! TCATAATGGACTGGTTAAGG+GGG - chr1_2:5088377-5088396 None:intergenic 40.0%
!! CTCATAATGGACTGGTTAAG+GGG - chr1_2:5088378-5088397 None:intergenic 40.0%
!! GCTCATAATGGACTGGTTAA+GGG - chr1_2:5088379-5088398 None:intergenic 40.0%
!! TGCTCATAATGGACTGGTTA+AGG - chr1_2:5088380-5088399 None:intergenic 40.0%
AGTTTATGTTCTTAGTCGCC+TGG - chr1_2:5088413-5088432 None:intergenic 40.0%
GTACACTTGGGTATCATTAC+AGG - chr1_2:5088491-5088510 None:intergenic 40.0%
GTTATGTCGCAACTTTGTAG+AGG + chr1_2:5088605-5088624 Msa0051040:intron 40.0%
! ACTTTTATGCTGTCGTGGAT+TGG + chr1_2:5088936-5088955 Msa0051040:CDS 40.0%
! CTTTTATGCTGTCGTGGATT+GGG + chr1_2:5088937-5088956 Msa0051040:CDS 40.0%
! TGCATTGATATGCAGCGTAA+AGG - chr1_2:5088977-5088996 None:intergenic 40.0%
TTACGCTGCATATCAATGCA+TGG + chr1_2:5088977-5088996 Msa0051040:CDS 40.0%
! GGATTTGTACGTCTTTTGCT+TGG + chr1_2:5089043-5089062 Msa0051040:CDS 40.0%
TGTAGGATAGAACACCCATT+TGG - chr1_2:5089253-5089272 None:intergenic 40.0%
TCCTACATTCCCAGGTAAAA+TGG + chr1_2:5089266-5089285 Msa0051040:intron 40.0%
! TCCATTTTACCTGGGAATGT+AGG - chr1_2:5089270-5089289 None:intergenic 40.0%
TCGCCAAACTCCAAAGAATT+AGG + chr1_2:5089313-5089332 Msa0051040:intron 40.0%
TGACATAGTTGCTGATGTTG+TGG + chr1_2:5089680-5089699 Msa0051040:intron 40.0%
TTAACACATGACTGCATGCA+AGG - chr1_2:5089751-5089770 None:intergenic 40.0%
AGAAACCATTTCCAAAGCAG+AGG - chr1_2:5089863-5089882 None:intergenic 40.0%
TAGAGTAAACAGGAAACCCT+TGG - chr1_2:5090619-5090638 None:intergenic 40.0%
CTACATCCTAACAGTTACTG+TGG + chr1_2:5090750-5090769 Msa0051040:intron 40.0%
TTATCTGCATTCCAAACAGG+TGG + chr1_2:5090805-5090824 Msa0051040:intron 40.0%
TAGCGTAATGTTTGCAACCT+TGG + chr1_2:5090896-5090915 Msa0051040:CDS 40.0%
ACTATGCTGCCTTTCAGAAT+AGG + chr1_2:5090970-5090989 Msa0051040:CDS 40.0%
CAATAACTGAAACAGCCTCT+TGG - chr1_2:5091019-5091038 None:intergenic 40.0%
! ACTGGCCTGATGATAAAACT+TGG - chr1_2:5091147-5091166 None:intergenic 40.0%
AGGGATATGAATTCCAGTGT+TGG - chr1_2:5091261-5091280 None:intergenic 40.0%
ACACTGGAATTCATATCCCT+TGG + chr1_2:5091261-5091280 Msa0051040:intron 40.0%
CACTGGAATTCATATCCCTT+GGG + chr1_2:5091262-5091281 Msa0051040:intron 40.0%
TCAAATTGCTTTCCAAGGGA+AGG - chr1_2:5091314-5091333 None:intergenic 40.0%
GACGTTCAAATTGCTTTCCA+AGG - chr1_2:5091319-5091338 None:intergenic 40.0%
TTTCAGATACCTTTCCAGCT+TGG + chr1_2:5091733-5091752 Msa0051040:intron 40.0%
TTCAGATACCTTTCCAGCTT+GGG + chr1_2:5091734-5091753 Msa0051040:intron 40.0%
TTGCATTTGTCCCATAAGGA+AGG - chr1_2:5091959-5091978 None:intergenic 40.0%
TTCCTTATGGGACAAATGCA+AGG + chr1_2:5091958-5091977 Msa0051040:CDS 40.0%
TACCTTGCATTTGTCCCATA+AGG - chr1_2:5091963-5091982 None:intergenic 40.0%
GGTATCTTAGTTGGCCAATA+AGG - chr1_2:5091999-5092018 None:intergenic 40.0%
CTTGGAAGACACTTCAGATT+TGG - chr1_2:5092049-5092068 None:intergenic 40.0%
TAGTGAGGCTCCAATATTGA+AGG + chr1_2:5092358-5092377 Msa0051040:intron 40.0%
AGGCCTTTCCAATGTGAAAA+TGG + chr1_2:5092378-5092397 Msa0051040:intron 40.0%
! CGAAAGTTTTGCTCAACTTG+TGG + chr1_2:5092795-5092814 Msa0051040:CDS 40.0%
AACAACAAACTCCGGCGAAA+TGG + chr1_2:5078074-5078093 Msa0051040:exon 45.0%
AGTAGATTTCGCCATTTCGC+CGG - chr1_2:5078088-5078107 None:intergenic 45.0%
!! TGCCGTGACTTTTGGAAACA+CGG - chr1_2:5078185-5078204 None:intergenic 45.0%
TCCAAAAGTCACGGCATCTT+AGG + chr1_2:5078189-5078208 Msa0051040:CDS 45.0%
! TCCTAAGATGCCGTGACTTT+TGG - chr1_2:5078193-5078212 None:intergenic 45.0%
CATGTGACGACTAGAAAGCT+TGG - chr1_2:5078223-5078242 None:intergenic 45.0%
! CAAGCTTTCTAGTCGTCACA+TGG + chr1_2:5078221-5078240 Msa0051040:CDS 45.0%
TCGTCACATGGCTAAACCTA+GGG + chr1_2:5078233-5078252 Msa0051040:CDS 45.0%
ATGAAGCACAGACACGGATA+CGG + chr1_2:5078386-5078405 Msa0051040:intron 45.0%
!!! GCGTCTTACAGCTTTTTTCG+TGG - chr1_2:5079644-5079663 None:intergenic 45.0%
! TTGGATCTTAAGAGCGTGGT+AGG - chr1_2:5079968-5079987 None:intergenic 45.0%
! AGCATTGGATCTTAAGAGCG+TGG - chr1_2:5079972-5079991 None:intergenic 45.0%
GCAACCATTCCCTACTTTGA+TGG + chr1_2:5080261-5080280 Msa0051040:intron 45.0%
ACGACCATCAAAGTAGGGAA+TGG - chr1_2:5080268-5080287 None:intergenic 45.0%
CTATACCAACGACCTTAGGA+AGG - chr1_2:5080575-5080594 None:intergenic 45.0%
GGTCGTTGGTATAGATGTTG+TGG + chr1_2:5080581-5080600 Msa0051040:CDS 45.0%
! ATGTTGTGGAGTTGGCTCTT+TGG + chr1_2:5080595-5080614 Msa0051040:CDS 45.0%
! TGTTGTGGAGTTGGCTCTTT+GGG + chr1_2:5080596-5080615 Msa0051040:CDS 45.0%
CAACTCTCTCTCAGTCATAG+CGG - chr1_2:5081498-5081517 None:intergenic 45.0%
TGAAAAAGACCTTGTCTCCC+AGG + chr1_2:5081529-5081548 Msa0051040:CDS 45.0%
GGGCGGATGATAATTATGAC+AGG + chr1_2:5081856-5081875 Msa0051040:intron 45.0%
GACATGCTATCACCTAGCTA+AGG - chr1_2:5082258-5082277 None:intergenic 45.0%
CGACAATTATCATGGGACAG+AGG - chr1_2:5083827-5083846 None:intergenic 45.0%
GCTTAATATGCTTTGGCCTG+AGG + chr1_2:5084165-5084184 Msa0051040:intron 45.0%
TAATATGCTTTGGCCTGAGG+AGG + chr1_2:5084168-5084187 Msa0051040:intron 45.0%
AATATGCTTTGGCCTGAGGA+GGG + chr1_2:5084169-5084188 Msa0051040:intron 45.0%
CATACTAAGTTGTGTGTCGC+AGG + chr1_2:5084346-5084365 Msa0051040:intron 45.0%
CTATATCCTCTCTCATGTGC+CGG - chr1_2:5084448-5084467 None:intergenic 45.0%
!! GAGAGGATATAGCATCGGTA+AGG + chr1_2:5084456-5084475 Msa0051040:intron 45.0%
! CCTTTTCCTTGCCTGAACAA+AGG - chr1_2:5084589-5084608 None:intergenic 45.0%
CCTTTGTTCAGGCAAGGAAA+AGG + chr1_2:5084586-5084605 Msa0051040:intron 45.0%
CTTGGGTACCCTGCTTAATT+TGG + chr1_2:5084867-5084886 Msa0051040:intron 45.0%
!! CAGGGCATTTTGGTATAGAG+AGG + chr1_2:5085107-5085126 Msa0051040:intron 45.0%
AATTCACACACCAGAGAGAG+AGG - chr1_2:5085177-5085196 None:intergenic 45.0%
!!! CATTTTTTGGTGCTGGGAGT+GGG + chr1_2:5085392-5085411 Msa0051040:intron 45.0%
!! CTTCTGAGGTATGCCCTTAT+CGG + chr1_2:5085650-5085669 Msa0051040:intron 45.0%
GTTGCAAACTACACCCACAA+AGG - chr1_2:5085733-5085752 None:intergenic 45.0%
TTTGCAACGTGTTTGACAGG+AGG + chr1_2:5085745-5085764 Msa0051040:CDS 45.0%
GTCTGCTTACTCTAAACAGC+GGG + chr1_2:5086276-5086295 Msa0051040:intron 45.0%
TCTGCTTACTCTAAACAGCG+GGG + chr1_2:5086277-5086296 Msa0051040:intron 45.0%
CTCCAAAAACATACGCATGC+AGG - chr1_2:5086403-5086422 None:intergenic 45.0%
GAGCCTTGACAAGAATTGCT+TGG + chr1_2:5086469-5086488 Msa0051040:intron 45.0%
GACCCAAGCAATTCTTGTCA+AGG - chr1_2:5086475-5086494 None:intergenic 45.0%
! CTCTAAACTTGCTTCTTCGC+CGG + chr1_2:5086519-5086538 Msa0051040:CDS 45.0%
! TCTAAACTTGCTTCTTCGCC+GGG + chr1_2:5086520-5086539 Msa0051040:CDS 45.0%
TTACCTCATCCACCAGAAGT+GGG - chr1_2:5086892-5086911 None:intergenic 45.0%
TTTACCTCATCCACCAGAAG+TGG - chr1_2:5086893-5086912 None:intergenic 45.0%
GTTGTTAACGGCAACAAAGC+TGG + chr1_2:5087048-5087067 Msa0051040:CDS 45.0%
TCAATGTGGATCCCACACAT+TGG - chr1_2:5087284-5087303 None:intergenic 45.0%
GCACATAGGCATTCTTTAGG+TGG + chr1_2:5087481-5087500 Msa0051040:intron 45.0%
GTGGAGTCAACTGTACGTAT+TGG - chr1_2:5087677-5087696 None:intergenic 45.0%
CTCTGCTTTAACTACTTGGC+TGG - chr1_2:5088199-5088218 None:intergenic 45.0%
AGGCTAAAAGTGGTAGAGCA+GGG - chr1_2:5088246-5088265 None:intergenic 45.0%
AAGGCTAAAAGTGGTAGAGC+AGG - chr1_2:5088247-5088266 None:intergenic 45.0%
!! ATATGGACAGAGGGTACCTT+TGG + chr1_2:5088316-5088335 Msa0051040:intron 45.0%
GGCTGATGTGAATGACTTCT+TGG - chr1_2:5088344-5088363 None:intergenic 45.0%
!! AGTAGCTGCTCATAATGGAC+TGG - chr1_2:5088386-5088405 None:intergenic 45.0%
GTGTCAGTAGCTGCTCATAA+TGG - chr1_2:5088391-5088410 None:intergenic 45.0%
AACTTCGACCCTCTTTACCA+TGG - chr1_2:5088437-5088456 None:intergenic 45.0%
TCCTGGATTTGGGTACACTT+GGG - chr1_2:5088503-5088522 None:intergenic 45.0%
ATCCTGGATTTGGGTACACT+TGG - chr1_2:5088504-5088523 None:intergenic 45.0%
TCTATCCTTCCCCTTAGTGA+TGG + chr1_2:5088552-5088571 Msa0051040:intron 45.0%
CTATCCTTCCCCTTAGTGAT+GGG + chr1_2:5088553-5088572 Msa0051040:intron 45.0%
! GGAAGACTTTTATGCTGTCG+TGG + chr1_2:5088931-5088950 Msa0051040:intron 45.0%
GCATAGATATCCGAGACTCT+AGG - chr1_2:5089072-5089091 None:intergenic 45.0%
CAATATACCGGTCACCTACA+CGG - chr1_2:5089102-5089121 None:intergenic 45.0%
TGAACGGAATGTTCGCCAAA+TGG + chr1_2:5089235-5089254 Msa0051040:CDS 45.0%
GAACGGAATGTTCGCCAAAT+GGG + chr1_2:5089236-5089255 Msa0051040:CDS 45.0%
GTGTTCTATCCTACATTCCC+AGG + chr1_2:5089258-5089277 Msa0051040:CDS 45.0%
!! TTCTTTGGAGTTTGGCGAAG+AGG - chr1_2:5089311-5089330 None:intergenic 45.0%
!! GTGTTCCTCTGCTTTGGAAA+TGG + chr1_2:5089855-5089874 Msa0051040:intron 45.0%
TCGTATGGAGCAGTACATTC+AGG + chr1_2:5090396-5090415 Msa0051040:CDS 45.0%
CGTATGGAGCAGTACATTCA+GGG + chr1_2:5090397-5090416 Msa0051040:CDS 45.0%
AGTACATTCAGGGACAGTCT+AGG + chr1_2:5090407-5090426 Msa0051040:CDS 45.0%
GTACATTCAGGGACAGTCTA+GGG + chr1_2:5090408-5090427 Msa0051040:CDS 45.0%
CAAGCACTTGCTTCCCAAAA+CGG + chr1_2:5090566-5090585 Msa0051040:intron 45.0%
GAAACAGCCTCTTGGAAGAA+GGG - chr1_2:5091011-5091030 None:intergenic 45.0%
TGAAACAGCCTCTTGGAAGA+AGG - chr1_2:5091012-5091031 None:intergenic 45.0%
! AGCTTGTTCATAGGCTTCAC+TGG - chr1_2:5091165-5091184 None:intergenic 45.0%
! GATAATGAGTTGGGACCCAA+GGG - chr1_2:5091280-5091299 None:intergenic 45.0%
! TGATAATGAGTTGGGACCCA+AGG - chr1_2:5091281-5091300 None:intergenic 45.0%
!! GTCTTTTCCAGTTTGCTCGA+AGG + chr1_2:5091336-5091355 Msa0051040:CDS 45.0%
ACTAACCTCTTCAGGTGCAA+CGG - chr1_2:5091381-5091400 None:intergenic 45.0%
! GATGGACTTGTCAACCTATG+TGG - chr1_2:5091885-5091904 None:intergenic 45.0%
CTTAGTGCAAAGGCAACTCT+TGG - chr1_2:5092067-5092086 None:intergenic 45.0%
!!! ACATTATAAATATTTTTAAA+AGG + chr1_2:5079011-5079030 Msa0051040:intron 5.0%
!!! TTTTTATTTTTTTATTTTGT+AGG + chr1_2:5080499-5080518 Msa0051040:intron 5.0%
!!! AAATAAAATTTTAGTAAATA+TGG - chr1_2:5082724-5082743 None:intergenic 5.0%
GGCGAAATGGCGAAATCTAC+TGG + chr1_2:5078087-5078106 Msa0051040:exon 50.0%
!! TTGCTGATTCACAAGCTCGC+CGG - chr1_2:5078128-5078147 None:intergenic 50.0%
GTCGTCACATGGCTAAACCT+AGG + chr1_2:5078232-5078251 Msa0051040:CDS 50.0%
CTAGAGAGAGCAAGAACCCT+AGG - chr1_2:5078252-5078271 None:intergenic 50.0%
! GAGCCACACTTTGGCTTCTA+AGG - chr1_2:5080360-5080379 None:intergenic 50.0%
! GTGGTTGAGTTGTACGTGAG+AGG + chr1_2:5080455-5080474 Msa0051040:intron 50.0%
! GTTGAGTTGTACGTGAGAGG+AGG + chr1_2:5080458-5080477 Msa0051040:intron 50.0%
!! TGTTTTGGGTCGCCTTCCTA+AGG + chr1_2:5080560-5080579 Msa0051040:CDS 50.0%
AAGTCCACGACTTCAAGCTG+AGG + chr1_2:5080777-5080796 Msa0051040:intron 50.0%
AGATCCTCAGCTTGAAGTCG+TGG - chr1_2:5080784-5080803 None:intergenic 50.0%
AGATAAGAAGGGGGAAGGCA+AGG - chr1_2:5080994-5081013 None:intergenic 50.0%
ATGGGAGATAAGAAGGGGGA+AGG - chr1_2:5080999-5081018 None:intergenic 50.0%
!! GGAATGGAGGGAGTATCCAA+TGG - chr1_2:5081105-5081124 None:intergenic 50.0%
! TCAGTCATAGCGGAAGCAAC+AGG - chr1_2:5081488-5081507 None:intergenic 50.0%
! AGAGGACATGGAGGCTCTTT+TGG + chr1_2:5081559-5081578 Msa0051040:CDS 50.0%
! GAGGACATGGAGGCTCTTTT+GGG + chr1_2:5081560-5081579 Msa0051040:CDS 50.0%
ATGTAGGACACTTACAGGGG+CGG + chr1_2:5081839-5081858 Msa0051040:intron 50.0%
ATTATGACAGGGGGAGCCTT+TGG + chr1_2:5081868-5081887 Msa0051040:intron 50.0%
GATCTATGTGCCAGGCAGTA+GGG + chr1_2:5082667-5082686 Msa0051040:intron 50.0%
! AGGAAGTATGGATACGGCCA+GGG - chr1_2:5082979-5082998 None:intergenic 50.0%
! TAGGAAGTATGGATACGGCC+AGG - chr1_2:5082980-5082999 None:intergenic 50.0%
TGCAGGTATGTCATGGGTGT+TGG + chr1_2:5083158-5083177 Msa0051040:intron 50.0%
AAGACTGAAGAGAGAGCTCC+AGG + chr1_2:5083202-5083221 Msa0051040:CDS 50.0%
! TGTGTGTCGCAGGTGTTGTA+TGG + chr1_2:5084356-5084375 Msa0051040:intron 50.0%
! GTGTGTCGCAGGTGTTGTAT+GGG + chr1_2:5084357-5084376 Msa0051040:intron 50.0%
TAAACTCCGGCACATGAGAG+AGG + chr1_2:5084439-5084458 Msa0051040:CDS 50.0%
CCACAGGACAAACTCCAAAG+AGG - chr1_2:5085081-5085100 None:intergenic 50.0%
!! CCTCTTTGGAGTTTGTCCTG+TGG + chr1_2:5085078-5085097 Msa0051040:intron 50.0%
TTTGTCCTGTGGCCTCATCA+GGG + chr1_2:5085089-5085108 Msa0051040:intron 50.0%
CCACTCCCAGCACCAAAAAA+TGG - chr1_2:5085394-5085413 None:intergenic 50.0%
!!! CCATTTTTTGGTGCTGGGAG+TGG + chr1_2:5085391-5085410 Msa0051040:intron 50.0%
! CGATAAGGGCATACCTCAGA+AGG - chr1_2:5085652-5085671 None:intergenic 50.0%
CTCTCATGCTCGCATAAGTG+AGG - chr1_2:5085861-5085880 None:intergenic 50.0%
GATTGCTCGTTGTGCTCTAC+AGG + chr1_2:5086055-5086074 Msa0051040:intron 50.0%
TCAAGGCTCTGCAAGTGTGT+AGG - chr1_2:5086458-5086477 None:intergenic 50.0%
GAGTTCGTTGGCAAACTCAC+GGG - chr1_2:5086741-5086760 None:intergenic 50.0%
GGAGTTCGTTGGCAAACTCA+CGG - chr1_2:5086742-5086761 None:intergenic 50.0%
TGTACTAGCACGGAGTTCGT+TGG - chr1_2:5086753-5086772 None:intergenic 50.0%
GAGCCTTCAAGCCAAACAGT+TGG - chr1_2:5086791-5086810 None:intergenic 50.0%
TGGCTTGAAGGCTCAACTAG+TGG + chr1_2:5086797-5086816 Msa0051040:CDS 50.0%
! TATCCCACTTCTGGTGGATG+AGG + chr1_2:5086886-5086905 Msa0051040:CDS 50.0%
GTTCCTACACTTGTTCCTCC+AGG + chr1_2:5087021-5087040 Msa0051040:CDS 50.0%
!! CCTCCAGGAGGTGTTGTTAA+CGG + chr1_2:5087036-5087055 Msa0051040:CDS 50.0%
TTGCCGTTAACAACACCTCC+TGG - chr1_2:5087042-5087061 None:intergenic 50.0%
GCGTGTCCCACCACTTTATT+TGG + chr1_2:5087249-5087268 Msa0051040:intron 50.0%
!! TCTTTTTCGTGTGGGGGGTT+TGG + chr1_2:5088050-5088069 Msa0051040:intron 50.0%
CCAAGTGGGAAGCCATTGAA+GGG + chr1_2:5088165-5088184 Msa0051040:intron 50.0%
CAAGTGGGAAGCCATTGAAG+GGG + chr1_2:5088166-5088185 Msa0051040:intron 50.0%
CTGGATGTCAACCCCTTCAA+TGG - chr1_2:5088180-5088199 None:intergenic 50.0%
GGCTAAAAGTGGTAGAGCAG+GGG - chr1_2:5088245-5088264 None:intergenic 50.0%
GGTTAAGGGGGTTCGATTAG+AGG - chr1_2:5088365-5088384 None:intergenic 50.0%
TATGAGCAGCTACTGACACC+AGG + chr1_2:5088392-5088411 Msa0051040:intron 50.0%
ACCCAAGTGTACCCAAATCC+AGG + chr1_2:5088499-5088518 Msa0051040:intron 50.0%
GATACCCATCACTAAGGGGA+AGG - chr1_2:5088560-5088579 None:intergenic 50.0%
ACTAAGCCCAGGCCTTTCAA+AGG + chr1_2:5088769-5088788 Msa0051040:intron 50.0%
!! TGTTGGCCTTTGAAAGGCCT+GGG - chr1_2:5088778-5088797 None:intergenic 50.0%
!! ATGTTGGCCTTTGAAAGGCC+TGG - chr1_2:5088779-5088798 None:intergenic 50.0%
TCTATGCAGTTCAGCCGTGT+AGG + chr1_2:5089085-5089104 Msa0051040:intron 50.0%
TGCGATCCTTGCAACTCGTA+TGG + chr1_2:5090381-5090400 Msa0051040:CDS 50.0%
ACTGCTCCATACGAGTTGCA+AGG - chr1_2:5090390-5090409 None:intergenic 50.0%
TCAGGGACAGTCTAGGGATT+TGG + chr1_2:5090414-5090433 Msa0051040:CDS 50.0%
ACTTGCTTCCCAAAACGGAG+AGG + chr1_2:5090571-5090590 Msa0051040:intron 50.0%
GAGTGCCCACAGTAACTGTT+AGG - chr1_2:5090759-5090778 None:intergenic 50.0%
! GGCATAATGTTTGGCTCGAC+AGG + chr1_2:5090872-5090891 Msa0051040:intron 50.0%
TCTCTAGCCCTTCTTCCAAG+AGG + chr1_2:5091001-5091020 Msa0051040:intron 50.0%
AAGTGGGCACAATGTTGGCA+AGG - chr1_2:5091121-5091140 None:intergenic 50.0%
TGCCAACATTGTGCCCACTT+TGG + chr1_2:5091121-5091140 Msa0051040:CDS 50.0%
CCTCAATCCTTCGAGCAAAC+TGG - chr1_2:5091346-5091365 None:intergenic 50.0%
! CCAGTTTGCTCGAAGGATTG+AGG + chr1_2:5091343-5091362 Msa0051040:CDS 50.0%
TGTGTAGCCAGAGGCTATGA+AGG - chr1_2:5091427-5091446 None:intergenic 50.0%
GTGAGATACTGTGTAGCCAG+AGG - chr1_2:5091436-5091455 None:intergenic 50.0%
TTTGACAGCCCAAGCTGGAA+AGG - chr1_2:5091745-5091764 None:intergenic 50.0%
!! CCATTTTTGACAGCCCAAGC+TGG - chr1_2:5091750-5091769 None:intergenic 50.0%
CCAGCTTGGGCTGTCAAAAA+TGG + chr1_2:5091747-5091766 Msa0051040:CDS 50.0%
CTGGCGACGATGTTGAACTC+CGG + chr1_2:5078106-5078125 Msa0051040:CDS 55.0%
ATTGCGGAGGAGCCACACTT+TGG - chr1_2:5080369-5080388 None:intergenic 55.0%
AAAGTGTGGCTCCTCCGCAA+TGG + chr1_2:5080368-5080387 Msa0051040:CDS 55.0%
TTTCGCATCGTCCATTGCGG+AGG - chr1_2:5080382-5080401 None:intergenic 55.0%
! GGAGTTGGCTCTTTGGGCTA+AGG + chr1_2:5080602-5080621 Msa0051040:CDS 55.0%
GCTCTTTGGGCTAAGGTGCA+TGG + chr1_2:5080609-5080628 Msa0051040:intron 55.0%
CATGTCCTCTTCCTCTGCCT+GGG - chr1_2:5081549-5081568 None:intergenic 55.0%
GGATCTATGTGCCAGGCAGT+AGG + chr1_2:5082666-5082685 Msa0051040:intron 55.0%
GGACAATTGTCCCTACTGCC+TGG - chr1_2:5082680-5082699 None:intergenic 55.0%
! CATTTGCTGCTTCCAGAGCC+TGG - chr1_2:5083223-5083242 None:intergenic 55.0%
GTTTGTCCTGTGGCCTCATC+AGG + chr1_2:5085088-5085107 Msa0051040:intron 55.0%
AAATGCCCTGATGAGGCCAC+AGG - chr1_2:5085097-5085116 None:intergenic 55.0%
!! GTGGCCTCATCAGGGCATTT+TGG + chr1_2:5085097-5085116 Msa0051040:intron 55.0%
TCTGCCAACACCTCTCTCTC+TGG + chr1_2:5085164-5085183 Msa0051040:intron 55.0%
! CACACCAGAGAGAGAGGTGT+TGG - chr1_2:5085171-5085190 None:intergenic 55.0%
TGGTTGACTAGTGCCTTGCG+CGG + chr1_2:5085814-5085833 Msa0051040:CDS 55.0%
AACAGCGGGGACAGTTGAAG+AGG + chr1_2:5086290-5086309 Msa0051040:intron 55.0%
TACCGCAGGTCAGCATGATC+AGG - chr1_2:5086316-5086335 None:intergenic 55.0%
ATGTCCTGCACTTGTACCGC+AGG - chr1_2:5086330-5086349 None:intergenic 55.0%
! AAACTTGCTTCTTCGCCGGG+AGG + chr1_2:5086523-5086542 Msa0051040:CDS 55.0%
CCTCCTGGAGGAACAAGTGT+AGG - chr1_2:5087027-5087046 None:intergenic 55.0%
CCTACACTTGTTCCTCCAGG+AGG + chr1_2:5087024-5087043 Msa0051040:CDS 55.0%
CCGTTAACAACACCTCCTGG+AGG - chr1_2:5087039-5087058 None:intergenic 55.0%
GCCAAGTGGGAAGCCATTGA+AGG + chr1_2:5088164-5088183 Msa0051040:intron 55.0%
CCCTTCAATGGCTTCCCACT+TGG - chr1_2:5088168-5088187 None:intergenic 55.0%
GGTCAGAAAGCTGATGCAGC+AGG + chr1_2:5089022-5089041 Msa0051040:CDS 55.0%
TGCTTGGCGACCTAGAGTCT+CGG + chr1_2:5089059-5089078 Msa0051040:CDS 55.0%
AGTTCAGCCGTGTAGGTGAC+CGG + chr1_2:5089092-5089111 Msa0051040:intron 55.0%
GGCCAAAGTGGGCACAATGT+TGG - chr1_2:5091126-5091145 None:intergenic 55.0%
! GCGCGTGCAAGCTTGTTCAT+AGG - chr1_2:5091174-5091193 None:intergenic 55.0%
GTTCACCGTTGCACCTGAAG+AGG + chr1_2:5091373-5091392 Msa0051040:CDS 55.0%
TCGGCTTACCCCAGATAAGC+TGG - chr1_2:5091794-5091813 None:intergenic 55.0%
!! CGGCACTGATACGTCGACAC+CGG + chr1_2:5078406-5078425 Msa0051040:intron 60.0%
!! GAGAGCGCCCGACAAAGTCA+GGG - chr1_2:5078978-5078997 None:intergenic 60.0%
!! TGAGAGCGCCCGACAAAGTC+AGG - chr1_2:5078979-5078998 None:intergenic 60.0%
GGTCGCCTTCCTAAGGTCGT+TGG + chr1_2:5080567-5080586 Msa0051040:CDS 60.0%
AGACCTTGTCTCCCAGGCAG+AGG + chr1_2:5081535-5081554 Msa0051040:CDS 60.0%
CTTCCTCTGCCTGGGAGACA+AGG - chr1_2:5081541-5081560 None:intergenic 60.0%
TGTCTCCCAGGCAGAGGAAG+AGG + chr1_2:5081541-5081560 Msa0051040:CDS 60.0%
CCATGTCCTCTTCCTCTGCC+TGG - chr1_2:5081550-5081569 None:intergenic 60.0%
CCAGGCAGAGGAAGAGGACA+TGG + chr1_2:5081547-5081566 Msa0051040:CDS 60.0%
GGCAGAGGAAGAGGACATGG+AGG + chr1_2:5081550-5081569 Msa0051040:CDS 60.0%
GAAGAGAGAGCTCCAGGCTC+TGG + chr1_2:5083208-5083227 Msa0051040:CDS 60.0%
GCGGTTGCGTGTACCTTCTG+AGG + chr1_2:5085636-5085655 Msa0051040:CDS 60.0%
GGCCTGATCATGCTGACCTG+CGG + chr1_2:5086311-5086330 Msa0051040:CDS 60.0%
CTGACCTGCGGTACAAGTGC+AGG + chr1_2:5086323-5086342 Msa0051040:CDS 60.0%
GGGCACTTCAAGACCGCGCA+AGG - chr1_2:5085830-5085849 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 5078017 5093095 5078017 ID=Msa0051040;Name=Msa0051040
chr1_2 mRNA 5078017 5093095 5078017 ID=Msa0051040-mRNA-1;Parent=Msa0051040;Name=Msa0051040-mRNA-1;_AED=0.13;_eAED=0.14;_QI=76|0.84|0.84|0.96|0.84|0.88|26|210|911
chr1_2 exon 5078017 5078270 5078017 ID=Msa0051040-mRNA-1:exon:1446;Parent=Msa0051040-mRNA-1
chr1_2 exon 5079815 5079885 5079815 ID=Msa0051040-mRNA-1:exon:1447;Parent=Msa0051040-mRNA-1
chr1_2 exon 5080100 5080180 5080100 ID=Msa0051040-mRNA-1:exon:1448;Parent=Msa0051040-mRNA-1
chr1_2 exon 5080346 5080413 5080346 ID=Msa0051040-mRNA-1:exon:1449;Parent=Msa0051040-mRNA-1
chr1_2 exon 5080521 5080623 5080521 ID=Msa0051040-mRNA-1:exon:1450;Parent=Msa0051040-mRNA-1
chr1_2 exon 5081437 5081585 5081437 ID=Msa0051040-mRNA-1:exon:1451;Parent=Msa0051040-mRNA-1
chr1_2 exon 5083163 5083280 5083163 ID=Msa0051040-mRNA-1:exon:1452;Parent=Msa0051040-mRNA-1
chr1_2 exon 5084368 5084472 5084368 ID=Msa0051040-mRNA-1:exon:1453;Parent=Msa0051040-mRNA-1
chr1_2 exon 5085556 5085657 5085556 ID=Msa0051040-mRNA-1:exon:1454;Parent=Msa0051040-mRNA-1
chr1_2 exon 5085745 5085882 5085745 ID=Msa0051040-mRNA-1:exon:1455;Parent=Msa0051040-mRNA-1
chr1_2 exon 5086077 5086205 5086077 ID=Msa0051040-mRNA-1:exon:1456;Parent=Msa0051040-mRNA-1
chr1_2 exon 5086295 5086375 5086295 ID=Msa0051040-mRNA-1:exon:1457;Parent=Msa0051040-mRNA-1
chr1_2 exon 5086470 5086544 5086470 ID=Msa0051040-mRNA-1:exon:1458;Parent=Msa0051040-mRNA-1
chr1_2 exon 5086737 5086907 5086737 ID=Msa0051040-mRNA-1:exon:1459;Parent=Msa0051040-mRNA-1
chr1_2 exon 5086988 5087120 5086988 ID=Msa0051040-mRNA-1:exon:1460;Parent=Msa0051040-mRNA-1
chr1_2 exon 5087782 5087846 5087782 ID=Msa0051040-mRNA-1:exon:1461;Parent=Msa0051040-mRNA-1
chr1_2 exon 5088932 5089102 5088932 ID=Msa0051040-mRNA-1:exon:1462;Parent=Msa0051040-mRNA-1
chr1_2 exon 5089200 5089279 5089200 ID=Msa0051040-mRNA-1:exon:1463;Parent=Msa0051040-mRNA-1
chr1_2 exon 5089908 5089962 5089908 ID=Msa0051040-mRNA-1:exon:1464;Parent=Msa0051040-mRNA-1
chr1_2 exon 5090346 5090459 5090346 ID=Msa0051040-mRNA-1:exon:1465;Parent=Msa0051040-mRNA-1
chr1_2 exon 5090894 5090997 5090894 ID=Msa0051040-mRNA-1:exon:1466;Parent=Msa0051040-mRNA-1
chr1_2 exon 5091109 5091217 5091109 ID=Msa0051040-mRNA-1:exon:1467;Parent=Msa0051040-mRNA-1
chr1_2 exon 5091326 5091394 5091326 ID=Msa0051040-mRNA-1:exon:1468;Parent=Msa0051040-mRNA-1
chr1_2 exon 5091739 5091804 5091739 ID=Msa0051040-mRNA-1:exon:1469;Parent=Msa0051040-mRNA-1
chr1_2 exon 5091890 5091979 5091890 ID=Msa0051040-mRNA-1:exon:1470;Parent=Msa0051040-mRNA-1
chr1_2 exon 5092775 5093095 5092775 ID=Msa0051040-mRNA-1:exon:1471;Parent=Msa0051040-mRNA-1
chr1_2 five_prime_UTR 5078017 5078092 5078017 ID=Msa0051040-mRNA-1:five_prime_utr;Parent=Msa0051040-mRNA-1
chr1_2 CDS 5078093 5078270 5078093 ID=Msa0051040-mRNA-1:cds;Parent=Msa0051040-mRNA-1
chr1_2 CDS 5079815 5079885 5079815 ID=Msa0051040-mRNA-1:cds;Parent=Msa0051040-mRNA-1
chr1_2 CDS 5080100 5080180 5080100 ID=Msa0051040-mRNA-1:cds;Parent=Msa0051040-mRNA-1
chr1_2 CDS 5080346 5080413 5080346 ID=Msa0051040-mRNA-1:cds;Parent=Msa0051040-mRNA-1
chr1_2 CDS 5080521 5080623 5080521 ID=Msa0051040-mRNA-1:cds;Parent=Msa0051040-mRNA-1
chr1_2 CDS 5081437 5081585 5081437 ID=Msa0051040-mRNA-1:cds;Parent=Msa0051040-mRNA-1
chr1_2 CDS 5083163 5083280 5083163 ID=Msa0051040-mRNA-1:cds;Parent=Msa0051040-mRNA-1
chr1_2 CDS 5084368 5084472 5084368 ID=Msa0051040-mRNA-1:cds;Parent=Msa0051040-mRNA-1
chr1_2 CDS 5085556 5085657 5085556 ID=Msa0051040-mRNA-1:cds;Parent=Msa0051040-mRNA-1
chr1_2 CDS 5085745 5085882 5085745 ID=Msa0051040-mRNA-1:cds;Parent=Msa0051040-mRNA-1
chr1_2 CDS 5086077 5086205 5086077 ID=Msa0051040-mRNA-1:cds;Parent=Msa0051040-mRNA-1
chr1_2 CDS 5086295 5086375 5086295 ID=Msa0051040-mRNA-1:cds;Parent=Msa0051040-mRNA-1
chr1_2 CDS 5086470 5086544 5086470 ID=Msa0051040-mRNA-1:cds;Parent=Msa0051040-mRNA-1
chr1_2 CDS 5086737 5086907 5086737 ID=Msa0051040-mRNA-1:cds;Parent=Msa0051040-mRNA-1
chr1_2 CDS 5086988 5087120 5086988 ID=Msa0051040-mRNA-1:cds;Parent=Msa0051040-mRNA-1
chr1_2 CDS 5087782 5087846 5087782 ID=Msa0051040-mRNA-1:cds;Parent=Msa0051040-mRNA-1
chr1_2 CDS 5088932 5089102 5088932 ID=Msa0051040-mRNA-1:cds;Parent=Msa0051040-mRNA-1
chr1_2 CDS 5089200 5089279 5089200 ID=Msa0051040-mRNA-1:cds;Parent=Msa0051040-mRNA-1
chr1_2 CDS 5089908 5089962 5089908 ID=Msa0051040-mRNA-1:cds;Parent=Msa0051040-mRNA-1
chr1_2 CDS 5090346 5090459 5090346 ID=Msa0051040-mRNA-1:cds;Parent=Msa0051040-mRNA-1
chr1_2 CDS 5090894 5090997 5090894 ID=Msa0051040-mRNA-1:cds;Parent=Msa0051040-mRNA-1
chr1_2 CDS 5091109 5091217 5091109 ID=Msa0051040-mRNA-1:cds;Parent=Msa0051040-mRNA-1
chr1_2 CDS 5091326 5091394 5091326 ID=Msa0051040-mRNA-1:cds;Parent=Msa0051040-mRNA-1
chr1_2 CDS 5091739 5091804 5091739 ID=Msa0051040-mRNA-1:cds;Parent=Msa0051040-mRNA-1
chr1_2 CDS 5091890 5091979 5091890 ID=Msa0051040-mRNA-1:cds;Parent=Msa0051040-mRNA-1
chr1_2 CDS 5092775 5092885 5092775 ID=Msa0051040-mRNA-1:cds;Parent=Msa0051040-mRNA-1
chr1_2 three_prime_UTR 5092886 5093095 5092886 ID=Msa0051040-mRNA-1:three_prime_utr;Parent=Msa0051040-mRNA-1
Gene Sequence

>Msa0051040

ATGGCGAAATCTACTGGCGACGATGTTGAACTCCGGCGAGCTTGTGAATCAGCAATTGAAGATCCTAAGCAGAAGATCATCTTATCAATCCGTGTTTCCAAAAGTCACGGCATCTTAGGAAAATCTTCCAAGCTTTCTAGTCGTCACATGGCTAAACCTAGGGTTCTTGCTCTCTCTACATTAACAAAGGGACAAACGACTACTGCTTTTCTTCGAGTTTTGAAGTATTCTACGGGAGGAGTTCTTGAACCTGCAAAACTATACAAGCTAAGGCATCTTTCAAAAGTAGAAGTTTTAACAAACGATCCTAGTGGATGTACATTTACACTGGGATTTGATAACCTTAGAAGCCAAAGTGTGGCTCCTCCGCAATGGACGATGCGAAATATTGATGACAGGAATCGTCTCCTTCTTTGCATCTTGACCATCTCTAAAGATGTTTTGGGTCGCCTTCCTAAGGTCGTTGGTATAGATGTTGTGGAGTTGGCTCTTTGGGCTAAGGAAAATAGAGCCCCTGTTTCAACTCAGAGTAATGTGAAAGATGGTGGTCCTGTTGCTTCCGCTATGACTGAGAGAGAGTTGAAAGTCAATGTTGAAAAAGACCTTGTCTCCCAGGCAGAGGAAGAGGACATGGAGGCTCTTTTGGGAACGTATGTCATGGGTGTTGGTGAAGCAGAAGAATTTTCTGAAAGACTGAAGAGAGAGCTCCAGGCTCTGGAAGCAGCAAATGTGCATGCCATTTTAGAAAGCGAGCCTTTAATAAATGAGGTGTTGTATGGGCTTGAAGCAGCAACAAATGTTGTAGACGATATGGATGAATGGTTAGGCACATTCAATGTTAAACTCCGGCACATGAGAGAGGATATAGCATCGATAGAAACCCGTAATAACAGCTTGCAAATGCAATCGGTAAATAACAAATCTCTCATCGAGGAGCTTGATAAGCTTCTTGAGCGGTTGCGTGTACCTTCTGAGTTTGCAACGTGTTTGACAGGAGGTTCATTTGATGAAGATCGGATGCTTCAAAATGTAGAAGCATGTGAATGGTTGACTAGTGCCTTGCGCGGTCTTGAAGTGCCCAATATTGACCTCACTTATGCGAGCATGAGAGCTGTTAAAGAGAAGCGTGCAGAACTTGAAAAATTAAAATCTACTTTTGTCAGGAGAGCTTCTGAATTCTTGAGAAATTACTTTGCTAGTTTGGTGGACTTCATGATAAGTGATAAAAGTTACTTTTCTCAGCGGGGACAGTTGAAGAGGCCTGATCATGCTGACCTGCGGTACAAGTGCAGGACATATGCACGTCTTCTTCAGCATTTGAAGAGCCTTGACAAGAATTGCTTGGGTCCACTGAGAAAAGCTTATTGCAGTTCTCTAAACTTGCTTCTTCGCCGGGAGGCCCGTGAGTTTGCCAACGAACTCCGTGCTAGTACAAAAGCATCTAGAAATCCAACTGTTTGGCTTGAAGGCTCAACTAGTGGTCAGAATGTAAATGCTACCGATACTTCTACAGTATCTGATGCTTATGCAAAGATGCTCACAATTTTTATCCCACTTCTGGTGGATGAGAGTTCGTTTTTTGCACACTTCATGTGCTTTGAAGTTCCTACACTTGTTCCTCCAGGAGGTGTTGTTAACGGCAACAAAGCTGGTTACGATGATGATGATGATTTGGGAATTATGGACATCGATGAGAATGACAGAAAAAATTCTGCTGAGCTTGCAGCTTTAAATGAATCACTTCAGGATTTACTGGACGGAATTCAAGAAGACTTTTATGCTGTCGTGGATTGGGCATACAAGATTGATCCTTTACGCTGCATATCAATGCATGGAATAACAGAACGATATCTTTCTGGTCAGAAAGCTGATGCAGCAGGATTTGTACGTCTTTTGCTTGGCGACCTAGAGTCTCGGATATCTATGCAGTTCAGCCGTTTTGTTGATGAAGCTTGCCATCAAATTGAAAGAAATGAACGGAATGTTCGCCAAATGGGTGTTCTATCCTACATTCCCAGGATCACATTTCATACCATACATCTTAATTGCATTGAGACACTTAATATTTGTAAGTCTTTCTTCACGTCTGATATTGATTTGCACAGATTTGCGATCCTTGCAACTCGTATGGAGCAGTACATTCAGGGACAGTCTAGGGATTTGGTTGACCAAGCATATACAAAATTTGTTAGCGTAATGTTTGCAACCTTGGAAAAAATATCACAAACAGATCCAAAGTATGCAGATATTTTTCTTTTTGAGAACTATGCTGCCTTTCAGAATAGGCAAGTTTTGTATGACCTTGCCAACATTGTGCCCACTTTGGCCAAGTTTTATCATCAGGCCAGTGAAGCCTATGAACAAGCTTGCACGCGCCATATTAGCATGATCATATACTTTCAATTTGAACGTCTTTTCCAGTTTGCTCGAAGGATTGAGGATTTGATGTTCACCGTTGCACCTGAAGAGATACCTTTCCAGCTTGGGCTGTCAAAAATGGATCTTCGAAAAATGTTAAAAACCAGCTTATCTGGGGTTGACAAGTCCATCAATGCGATGTATAAGAAACTACAGAAGAATTTGACTTCAGAAGAACTGTTACCTTCCTTATGGGACAAATGCAAGAAAGAGTTTCTTGACAAGTACGAAAGTTTTGCTCAACTTGTGGCTAAGATTTACCCTAATGAGACATTCACATCTGTTGCAGAGATGAAAAGCATTTTAGCTAATATGTAA

Protein sequence

>Msa0051040

MAKSTGDDVELRRACESAIEDPKQKIILSIRVSKSHGILGKSSKLSSRHMAKPRVLALSTLTKGQTTTAFLRVLKYSTGGVLEPAKLYKLRHLSKVEVLTNDPSGCTFTLGFDNLRSQSVAPPQWTMRNIDDRNRLLLCILTISKDVLGRLPKVVGIDVVELALWAKENRAPVSTQSNVKDGGPVASAMTERELKVNVEKDLVSQAEEEDMEALLGTYVMGVGEAEEFSERLKRELQALEAANVHAILESEPLINEVLYGLEAATNVVDDMDEWLGTFNVKLRHMREDIASIETRNNSLQMQSVNNKSLIEELDKLLERLRVPSEFATCLTGGSFDEDRMLQNVEACEWLTSALRGLEVPNIDLTYASMRAVKEKRAELEKLKSTFVRRASEFLRNYFASLVDFMISDKSYFSQRGQLKRPDHADLRYKCRTYARLLQHLKSLDKNCLGPLRKAYCSSLNLLLRREAREFANELRASTKASRNPTVWLEGSTSGQNVNATDTSTVSDAYAKMLTIFIPLLVDESSFFAHFMCFEVPTLVPPGGVVNGNKAGYDDDDDLGIMDIDENDRKNSAELAALNESLQDLLDGIQEDFYAVVDWAYKIDPLRCISMHGITERYLSGQKADAAGFVRLLLGDLESRISMQFSRFVDEACHQIERNERNVRQMGVLSYIPRITFHTIHLNCIETLNICKSFFTSDIDLHRFAILATRMEQYIQGQSRDLVDQAYTKFVSVMFATLEKISQTDPKYADIFLFENYAAFQNRQVLYDLANIVPTLAKFYHQASEAYEQACTRHISMIIYFQFERLFQFARRIEDLMFTVAPEEIPFQLGLSKMDLRKMLKTSLSGVDKSINAMYKKLQKNLTSEELLPSLWDKCKKEFLDKYESFAQLVAKIYPNETFTSVAEMKSILANM*