Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0101070 | XP_003588769.1 | 95.082 | 61 | 3 | 0 | 7 | 67 | 31 | 91 | 1.56e-30 | 125 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0101070 | sp|Q8RWZ5|SD25_ARATH | 60.656 | 61 | 24 | 0 | 7 | 67 | 21 | 81 | 1.08e-17 | 80.1 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0101070 | G7I709 | 95.082 | 61 | 3 | 0 | 7 | 67 | 31 | 91 | 7.44e-31 | 125 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0004350 | Msa0101070 | 0.807578 | 4.721210e-50 | -8.615850e-47 |
| Msa0006700 | Msa0101070 | 0.845792 | 3.256417e-59 | -8.615850e-47 |
| Msa0055280 | Msa0101070 | 0.818117 | 2.316778e-52 | -8.615850e-47 |
| Msa0101060 | Msa0101070 | 0.854414 | 1.251021e-61 | -8.615850e-47 |
| Msa0101070 | Msa0101650 | 0.808687 | 2.739847e-50 | -8.615850e-47 |
| Msa0101070 | Msa0141550 | 0.801177 | 1.018153e-48 | -8.615850e-47 |
| Msa0101070 | Msa0147550 | 0.804875 | 1.750973e-49 | -8.615850e-47 |
| Msa0101070 | Msa0162050 | 0.802116 | 6.533780e-49 | -8.615850e-47 |
| Msa0101070 | Msa0162070 | 0.800832 | 1.197667e-48 | -8.615850e-47 |
| Msa0101070 | Msa0169960 | 0.825562 | 4.380164e-54 | -8.615850e-47 |
| Msa0101070 | Msa0193760 | 0.813828 | 2.100556e-51 | -8.615850e-47 |
| Msa0101070 | Msa0232860 | 0.806104 | 9.671761e-50 | -8.615850e-47 |
| Msa0101070 | Msa0235550 | 0.818747 | 1.668362e-52 | -8.615850e-47 |
| Msa0101070 | Msa0274520 | 0.820317 | 7.313081e-53 | -8.615850e-47 |
| Msa0101070 | Msa0292180 | 0.802100 | 6.584646e-49 | -8.615850e-47 |
| Msa0101070 | Msa0296610 | 0.810517 | 1.108314e-50 | -8.615850e-47 |
| Msa0101070 | Msa0323630 | 0.815447 | 9.200671e-52 | -8.615850e-47 |
| Msa0101070 | Msa0363460 | 0.813949 | 1.975750e-51 | -8.615850e-47 |
| Msa0101070 | Msa0371610 | 0.814170 | 1.766094e-51 | -8.615850e-47 |
| Msa0101070 | Msa0389050 | 0.802883 | 4.541804e-49 | -8.615850e-47 |
| Msa0101070 | Msa0411000 | 0.825365 | 4.877161e-54 | -8.615850e-47 |
| Msa0101070 | Msa0414070 | 0.808697 | 2.727089e-50 | -8.615850e-47 |
| Msa0101070 | Msa0419990 | 0.801027 | 1.092628e-48 | -8.615850e-47 |
| Msa0101070 | Msa0431520 | 0.807715 | 4.413660e-50 | -8.615850e-47 |
| Msa0101070 | Msa0431830 | 0.817027 | 4.079277e-52 | -8.615850e-47 |
| Msa0101070 | Msa0455230 | 0.814064 | 1.863836e-51 | -8.615850e-47 |
| Msa0101070 | Msa0492740 | 0.804346 | 2.257890e-49 | -8.615850e-47 |
| Msa0101070 | Msa0501470 | 0.818703 | 1.706592e-52 | -8.615850e-47 |
| Msa0101070 | Msa0511890 | 0.802458 | 5.557968e-49 | -8.615850e-47 |
| Msa0101070 | Msa0549740 | 0.806169 | 9.373919e-50 | -8.615850e-47 |
| Msa0101070 | Msa0563140 | 0.813529 | 2.444333e-51 | -8.615850e-47 |
| Msa0101070 | Msa0598250 | 0.809408 | 1.920676e-50 | -8.615850e-47 |
| Msa0101070 | Msa0617370 | 0.832780 | 7.777169e-56 | -8.615850e-47 |
| Msa0101070 | Msa0620640 | 0.841884 | 3.623547e-58 | -8.615850e-47 |
| Msa0101070 | Msa0654060 | 0.806785 | 6.948979e-50 | -8.615850e-47 |
| Msa0101070 | Msa0718470 | 0.800175 | 1.630152e-48 | -8.615850e-47 |
| Msa0101070 | Msa0726610 | 0.815500 | 8.955133e-52 | -8.615850e-47 |
| Msa0101070 | Msa0731710 | 0.805335 | 1.402792e-49 | -8.615850e-47 |
| Msa0101070 | Msa0752580 | 0.825423 | 4.725154e-54 | -8.615850e-47 |
| Msa0101070 | Msa0754500 | 0.819837 | 9.418542e-53 | -8.615850e-47 |
| Msa0101070 | Msa0756480 | 0.813423 | 2.579283e-51 | -8.615850e-47 |
| Msa0101070 | Msa0760890 | 0.810264 | 1.256857e-50 | -8.615850e-47 |
| Msa0101070 | Msa0763280 | 0.810749 | 9.874081e-51 | -8.615850e-47 |
| Msa0101070 | Msa0807730 | 0.800388 | 1.475424e-48 | -8.615850e-47 |
| Msa0101070 | Msa0830900 | 0.824085 | 9.771760e-54 | -8.615850e-47 |
| Msa0101070 | Msa0835510 | 0.805327 | 1.408591e-49 | -8.615850e-47 |
| Msa0101070 | Msa0883450 | 0.805984 | 1.025091e-49 | -8.615850e-47 |
| Msa0101070 | Msa0887070 | 0.833449 | 5.300623e-56 | -8.615850e-47 |
| Msa0101070 | Msa0903730 | 0.839568 | 1.466205e-57 | -8.615850e-47 |
| Msa0101070 | Msa0937940 | 0.807222 | 5.615526e-50 | -8.615850e-47 |
| Msa0101070 | Msa0950410 | 0.814557 | 1.450043e-51 | -8.615850e-47 |
| Msa0101070 | Msa0950620 | 0.807681 | 4.487560e-50 | -8.615850e-47 |
| Msa0101070 | Msa0951720 | 0.830903 | 2.259221e-55 | -8.615850e-47 |
| Msa0101070 | Msa0975080 | 0.802463 | 5.543712e-49 | -8.615850e-47 |
| Msa0101070 | Msa0978000 | 0.807369 | 5.227650e-50 | -8.615850e-47 |
| Msa0101070 | Msa0988500 | 0.804802 | 1.813419e-49 | -8.615850e-47 |
| Msa0101070 | Msa1000470 | 0.813848 | 2.079472e-51 | -8.615850e-47 |
| Msa0101070 | Msa1032350 | 0.812701 | 3.714571e-51 | -8.615850e-47 |
| Msa0101070 | Msa1036390 | 0.801846 | 7.426627e-49 | -8.615850e-47 |
| Msa0101070 | Msa1046610 | 0.802298 | 5.996297e-49 | -8.615850e-47 |
| Msa0101070 | Msa1072350 | 0.820647 | 6.142743e-53 | -8.615850e-47 |
| Msa0101070 | Msa1073500 | 0.839055 | 1.991736e-57 | -8.615850e-47 |
| Msa0101070 | Msa1080430 | 0.816592 | 5.107379e-52 | -8.615850e-47 |
| Msa0101070 | Msa1081700 | 0.803397 | 3.555120e-49 | -8.615850e-47 |
| Msa0101070 | Msa1118140 | 0.806825 | 6.815845e-50 | -8.615850e-47 |
| Msa0101070 | Msa1130650 | 0.800522 | 1.385247e-48 | -8.615850e-47 |
| Msa0101070 | Msa1140010 | 0.810072 | 1.382188e-50 | -8.615850e-47 |
| Msa0101070 | Msa1184580 | 0.800475 | 1.416673e-48 | -8.615850e-47 |
| Msa0101070 | Msa1191390 | 0.810135 | 1.339939e-50 | -8.615850e-47 |
| Msa0101070 | Msa1201990 | 0.812050 | 5.152197e-51 | -8.615850e-47 |
| Msa0101070 | Msa1243130 | 0.801476 | 8.843474e-49 | -8.615850e-47 |
| Msa0101070 | Msa1272130 | 0.814307 | 1.646589e-51 | -8.615850e-47 |
| Msa0101070 | Msa1279860 | 0.806530 | 7.868266e-50 | -8.615850e-47 |
| Msa0101070 | Msa1287160 | 0.822643 | 2.122617e-53 | -8.615850e-47 |
| Msa0101070 | Msa1287340 | 0.829237 | 5.759078e-55 | -8.615850e-47 |
| Msa0101070 | Msa1317710 | 0.806016 | 1.009246e-49 | -8.615850e-47 |
| Msa0101070 | Msa1329990 | 0.815329 | 9.773001e-52 | -8.615850e-47 |
| Msa0101070 | Msa1355260 | 0.806976 | 6.333401e-50 | -8.615850e-47 |
| Msa0101070 | Msa1373950 | 0.800966 | 1.124878e-48 | -8.615850e-47 |
| Msa0101070 | Msa1386520 | 0.810644 | 1.040341e-50 | -8.615850e-47 |
| Msa0101070 | Msa1397540 | 0.806194 | 9.259835e-50 | -8.615850e-47 |
| Msa0101070 | Msa1405470 | 0.840555 | 8.102079e-58 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0101070 | MtrunA17_Chr1g0149381 | 95.082 | 61 | 3 | 0 | 7 | 67 | 31 | 91 | 1.43e-34 | 125 |
| Msa0101070 | MtrunA17_Chr3g0137741 | 63.333 | 60 | 22 | 0 | 8 | 67 | 27 | 86 | 5.76e-21 | 86.3 |
| Msa0101070 | MtrunA17_Chr2g0318181 | 61.667 | 60 | 23 | 0 | 9 | 68 | 32 | 91 | 5.58e-18 | 77.4 |
| Msa0101070 | MtrunA17_Chr2g0318171 | 66.667 | 57 | 19 | 0 | 9 | 65 | 31 | 87 | 5.87e-18 | 77.8 |
| Msa0101070 | MtrunA17_Chr2g0314611 | 58.333 | 60 | 25 | 0 | 9 | 68 | 31 | 90 | 1.78e-16 | 73.6 |
| Msa0101070 | MtrunA17_Chr2g0333091 | 45.714 | 70 | 32 | 2 | 10 | 74 | 27 | 95 | 1.78e-12 | 62.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0101070 | AT4G32300.1 | 60.656 | 61 | 24 | 0 | 7 | 67 | 21 | 81 | 1.10e-18 | 80.1 |
Find 17 sgRNAs with CRISPR-Local
Find 120 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTGTCAAACAAACAAGAATT+TGG | 0.221242 | 1_3:-7564250 | Msa0101070:CDS |
| AACAAACAAGAATTTGGTTT+TGG | 0.272697 | 1_3:-7564244 | Msa0101070:CDS |
| TTGAAGGCTCTCAAATGAAT+TGG | 0.329811 | 1_3:-7564297 | Msa0101070:CDS |
| ATGGATAGCACAAAATTGTT+TGG | 0.353260 | 1_3:-7564169 | Msa0101070:CDS |
| TAAGTTTGTGTTTGATGAAA+AGG | 0.406184 | 1_3:-7564111 | Msa0101070:CDS |
| CTCAAATGAATTGGATTGAT+AGG | 0.408242 | 1_3:-7564288 | Msa0101070:CDS |
| TTCGCTGGTATTCAACGGAT+TGG | 0.429538 | 1_3:-7564337 | Msa0101070:CDS |
| ATTTGAGAGCCTTCAAATCC+TGG | 0.434231 | 1_3:+7564304 | None:intergenic |
| AACTTATCAGAATTAGAAAC+AGG | 0.475908 | 1_3:+7564128 | None:intergenic |
| AAGTTTGTGTTTGATGAAAA+GGG | 0.485126 | 1_3:-7564110 | Msa0101070:CDS |
| AAGATCTCACCAGGATTTGA+AGG | 0.486645 | 1_3:-7564313 | Msa0101070:CDS |
| CGGATTGGAAAGATCTCACC+AGG | 0.530461 | 1_3:-7564322 | Msa0101070:CDS |
| ATGAATTGGATTGATAGGAA+TGG | 0.530746 | 1_3:-7564283 | Msa0101070:CDS |
| TTGGTTTCGCTGGTATTCAA+CGG | 0.549301 | 1_3:-7564342 | Msa0101070:CDS |
| GTTTGGTCAACAAATACAAG+TGG | 0.585004 | 1_3:-7564056 | Msa0101070:CDS |
| AAGACTCATTCATCATGTTG+AGG | 0.642032 | 1_3:-7564997 | None:intergenic |
| TCTACTTGCAATAGTCCACA+TGG | 0.643271 | 1_3:-7564188 | Msa0101070:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAACAAAAACAACTTTTTA+AGG | + | chr1_3:7564292-7564311 | None:intergenic | 15.0% |
| !!! | AAAACAAAAACAACTTTTTA+AGG | + | chr1_3:7564292-7564311 | None:intergenic | 15.0% |
| !! | TTTACAAAAAGGAAGAAATT+TGG | - | chr1_3:7564956-7564975 | Msa0101070:intron | 20.0% |
| !! | TTTACAAAAAGGAAGAAATT+TGG | - | chr1_3:7564956-7564975 | Msa0101070:intron | 20.0% |
| ! | TTCATGAATATGATAGAAGA+GGG | + | chr1_3:7564209-7564228 | None:intergenic | 25.0% |
| ! | ATTCATGAATATGATAGAAG+AGG | + | chr1_3:7564210-7564229 | None:intergenic | 25.0% |
| ! | ATATGGCATAGACAAAAAAA+TGG | + | chr1_3:7564234-7564253 | None:intergenic | 25.0% |
| !!! | ACAAAAACAACTTTTTAAGG+TGG | + | chr1_3:7564289-7564308 | None:intergenic | 25.0% |
| !! | AATTACTTGGTTCTTATATG+AGG | + | chr1_3:7564419-7564438 | None:intergenic | 25.0% |
| !!! | TCTTATCTGAGGATTTTTTT+CGG | + | chr1_3:7564562-7564581 | None:intergenic | 25.0% |
| ! | AAAAATCCTCAGATAAGAAT+TGG | - | chr1_3:7564564-7564583 | Msa0101070:intron | 25.0% |
| !!! | AACAAACAAGAATTTGGTTT+TGG | - | chr1_3:7564790-7564809 | Msa0101070:intron | 25.0% |
| ! | AACTTATCAGAATTAGAAAC+AGG | + | chr1_3:7564909-7564928 | None:intergenic | 25.0% |
| ! | TAAGTTTGTGTTTGATGAAA+AGG | - | chr1_3:7564923-7564942 | Msa0101070:intron | 25.0% |
| ! | AAGTTTGTGTTTGATGAAAA+GGG | - | chr1_3:7564924-7564943 | Msa0101070:intron | 25.0% |
| !!! | GGTAATGCTTTTTTACAAAA+AGG | - | chr1_3:7564945-7564964 | Msa0101070:intron | 25.0% |
| ! | AAAAAGGAAGAAATTTGGTT+TGG | - | chr1_3:7564961-7564980 | Msa0101070:intron | 25.0% |
| ! | TTCATGAATATGATAGAAGA+GGG | + | chr1_3:7564209-7564228 | None:intergenic | 25.0% |
| ! | ATTCATGAATATGATAGAAG+AGG | + | chr1_3:7564210-7564229 | None:intergenic | 25.0% |
| ! | ATATGGCATAGACAAAAAAA+TGG | + | chr1_3:7564234-7564253 | None:intergenic | 25.0% |
| !!! | ACAAAAACAACTTTTTAAGG+TGG | + | chr1_3:7564289-7564308 | None:intergenic | 25.0% |
| !! | AATTACTTGGTTCTTATATG+AGG | + | chr1_3:7564419-7564438 | None:intergenic | 25.0% |
| !!! | TCTTATCTGAGGATTTTTTT+CGG | + | chr1_3:7564562-7564581 | None:intergenic | 25.0% |
| ! | AAAAATCCTCAGATAAGAAT+TGG | - | chr1_3:7564564-7564583 | Msa0101070:intron | 25.0% |
| !!! | AACAAACAAGAATTTGGTTT+TGG | - | chr1_3:7564790-7564809 | Msa0101070:intron | 25.0% |
| ! | AACTTATCAGAATTAGAAAC+AGG | + | chr1_3:7564909-7564928 | None:intergenic | 25.0% |
| ! | TAAGTTTGTGTTTGATGAAA+AGG | - | chr1_3:7564923-7564942 | Msa0101070:intron | 25.0% |
| ! | AAGTTTGTGTTTGATGAAAA+GGG | - | chr1_3:7564924-7564943 | Msa0101070:intron | 25.0% |
| !!! | GGTAATGCTTTTTTACAAAA+AGG | - | chr1_3:7564945-7564964 | Msa0101070:intron | 25.0% |
| ! | AAAAAGGAAGAAATTTGGTT+TGG | - | chr1_3:7564961-7564980 | Msa0101070:intron | 25.0% |
| AGAAAAGACAGAAAAGAAAG+TGG | + | chr1_3:7564132-7564151 | None:intergenic | 30.0% | |
| ! | TACATAGTGGAAAAGCAATA+TGG | + | chr1_3:7564166-7564185 | None:intergenic | 30.0% |
| AGGGTTGAATTATGTTATCT+TGG | + | chr1_3:7564190-7564209 | None:intergenic | 30.0% | |
| ! | CACATAGTGGAAAAACAATA+TGG | + | chr1_3:7564251-7564270 | None:intergenic | 30.0% |
| !! | CATATTGTTTTTCCACTATG+TGG | - | chr1_3:7564249-7564268 | Msa0101070:CDS | 30.0% |
| AGAAGCAAAGCAAAAAACTA+TGG | + | chr1_3:7564380-7564399 | None:intergenic | 30.0% | |
| AGAACCAAGTAATTTGACAA+AGG | - | chr1_3:7564425-7564444 | Msa0101070:intron | 30.0% | |
| GAACCAAGTAATTTGACAAA+GGG | - | chr1_3:7564426-7564445 | Msa0101070:intron | 30.0% | |
| AATTCTAGTACTTCTATGTG+AGG | + | chr1_3:7564483-7564502 | None:intergenic | 30.0% | |
| !!! | TTTTTTTCGGTCTTAGAGTT+CGG | + | chr1_3:7564549-7564568 | None:intergenic | 30.0% |
| ACAAAACCATGAGAAATCAT+TGG | - | chr1_3:7564603-7564622 | Msa0101070:intron | 30.0% | |
| GTATTCACAATATGGAAAAG+AGG | + | chr1_3:7564629-7564648 | None:intergenic | 30.0% | |
| GATACACAAACATAACCATA+GGG | + | chr1_3:7564651-7564670 | None:intergenic | 30.0% | |
| TGATACACAAACATAACCAT+AGG | + | chr1_3:7564652-7564671 | None:intergenic | 30.0% | |
| !! | ACTTTTGTCTGAAGTAGTTT+TGG | - | chr1_3:7564673-7564692 | Msa0101070:intron | 30.0% |
| CTCAAATGAATTGGATTGAT+AGG | - | chr1_3:7564746-7564765 | Msa0101070:intron | 30.0% | |
| ATGAATTGGATTGATAGGAA+TGG | - | chr1_3:7564751-7564770 | Msa0101070:intron | 30.0% | |
| GTGTCAAACAAACAAGAATT+TGG | - | chr1_3:7564784-7564803 | Msa0101070:intron | 30.0% | |
| ATGGATAGCACAAAATTGTT+TGG | - | chr1_3:7564865-7564884 | Msa0101070:intron | 30.0% | |
| AGAAAAGACAGAAAAGAAAG+TGG | + | chr1_3:7564132-7564151 | None:intergenic | 30.0% | |
| ! | TACATAGTGGAAAAGCAATA+TGG | + | chr1_3:7564166-7564185 | None:intergenic | 30.0% |
| AGGGTTGAATTATGTTATCT+TGG | + | chr1_3:7564190-7564209 | None:intergenic | 30.0% | |
| ! | CACATAGTGGAAAAACAATA+TGG | + | chr1_3:7564251-7564270 | None:intergenic | 30.0% |
| !! | CATATTGTTTTTCCACTATG+TGG | - | chr1_3:7564249-7564268 | Msa0101070:CDS | 30.0% |
| AGAAGCAAAGCAAAAAACTA+TGG | + | chr1_3:7564380-7564399 | None:intergenic | 30.0% | |
| AGAACCAAGTAATTTGACAA+AGG | - | chr1_3:7564425-7564444 | Msa0101070:intron | 30.0% | |
| GAACCAAGTAATTTGACAAA+GGG | - | chr1_3:7564426-7564445 | Msa0101070:intron | 30.0% | |
| AATTCTAGTACTTCTATGTG+AGG | + | chr1_3:7564483-7564502 | None:intergenic | 30.0% | |
| !!! | TTTTTTTCGGTCTTAGAGTT+CGG | + | chr1_3:7564549-7564568 | None:intergenic | 30.0% |
| ACAAAACCATGAGAAATCAT+TGG | - | chr1_3:7564603-7564622 | Msa0101070:intron | 30.0% | |
| GTATTCACAATATGGAAAAG+AGG | + | chr1_3:7564629-7564648 | None:intergenic | 30.0% | |
| GATACACAAACATAACCATA+GGG | + | chr1_3:7564651-7564670 | None:intergenic | 30.0% | |
| TGATACACAAACATAACCAT+AGG | + | chr1_3:7564652-7564671 | None:intergenic | 30.0% | |
| !! | ACTTTTGTCTGAAGTAGTTT+TGG | - | chr1_3:7564673-7564692 | Msa0101070:intron | 30.0% |
| CTCAAATGAATTGGATTGAT+AGG | - | chr1_3:7564746-7564765 | Msa0101070:intron | 30.0% | |
| ATGAATTGGATTGATAGGAA+TGG | - | chr1_3:7564751-7564770 | Msa0101070:intron | 30.0% | |
| GTGTCAAACAAACAAGAATT+TGG | - | chr1_3:7564784-7564803 | Msa0101070:intron | 30.0% | |
| ATGGATAGCACAAAATTGTT+TGG | - | chr1_3:7564865-7564884 | Msa0101070:intron | 30.0% | |
| ATGTTGAGGTAAACCTTAGT+TGG | - | chr1_3:7564051-7564070 | Msa0101070:CDS | 35.0% | |
| ACACTTGAATTGACCAACTA+AGG | + | chr1_3:7564067-7564086 | None:intergenic | 35.0% | |
| ATGTTATCTTGGCTACATAG+TGG | + | chr1_3:7564179-7564198 | None:intergenic | 35.0% | |
| GAATTCATGAAGAGAGAAGA+GGG | + | chr1_3:7564358-7564377 | None:intergenic | 35.0% | |
| TCACCCTTTGTCAAATTACT+TGG | + | chr1_3:7564432-7564451 | None:intergenic | 35.0% | |
| ACCTTGACTGAAACAATTCT+CGG | - | chr1_3:7564506-7564525 | Msa0101070:intron | 35.0% | |
| TCCATATTGTGAATACCCTA+TGG | - | chr1_3:7564633-7564652 | Msa0101070:intron | 35.0% | |
| ! | ACCATAGGGTATTCACAATA+TGG | + | chr1_3:7564637-7564656 | None:intergenic | 35.0% |
| TTGAAGGCTCTCAAATGAAT+TGG | - | chr1_3:7564737-7564756 | Msa0101070:intron | 35.0% | |
| ! | ACAATTTTGTGCTATCCATG+TGG | + | chr1_3:7564864-7564883 | None:intergenic | 35.0% |
| GTTTGGTCAACAAATACAAG+TGG | - | chr1_3:7564978-7564997 | Msa0101070:intron | 35.0% | |
| ATGTTGAGGTAAACCTTAGT+TGG | - | chr1_3:7564051-7564070 | Msa0101070:CDS | 35.0% | |
| ACACTTGAATTGACCAACTA+AGG | + | chr1_3:7564067-7564086 | None:intergenic | 35.0% | |
| ATGTTATCTTGGCTACATAG+TGG | + | chr1_3:7564179-7564198 | None:intergenic | 35.0% | |
| GAATTCATGAAGAGAGAAGA+GGG | + | chr1_3:7564358-7564377 | None:intergenic | 35.0% | |
| TCACCCTTTGTCAAATTACT+TGG | + | chr1_3:7564432-7564451 | None:intergenic | 35.0% | |
| ACCTTGACTGAAACAATTCT+CGG | - | chr1_3:7564506-7564525 | Msa0101070:intron | 35.0% | |
| TCCATATTGTGAATACCCTA+TGG | - | chr1_3:7564633-7564652 | Msa0101070:intron | 35.0% | |
| ! | ACCATAGGGTATTCACAATA+TGG | + | chr1_3:7564637-7564656 | None:intergenic | 35.0% |
| TTGAAGGCTCTCAAATGAAT+TGG | - | chr1_3:7564737-7564756 | Msa0101070:intron | 35.0% | |
| ! | ACAATTTTGTGCTATCCATG+TGG | + | chr1_3:7564864-7564883 | None:intergenic | 35.0% |
| GTTTGGTCAACAAATACAAG+TGG | - | chr1_3:7564978-7564997 | Msa0101070:intron | 35.0% | |
| ! | GTTTTTCCACTATGTGGTCA+AGG | - | chr1_3:7564255-7564274 | Msa0101070:CDS | 40.0% |
| TTTCTACCTTGACCACATAG+TGG | + | chr1_3:7564264-7564283 | None:intergenic | 40.0% | |
| AGAGAGAAGAGGGTTGAAAT+AGG | + | chr1_3:7564348-7564367 | None:intergenic | 40.0% | |
| GGAATTCATGAAGAGAGAAG+AGG | + | chr1_3:7564359-7564378 | None:intergenic | 40.0% | |
| ACCGAGAATTGTTTCAGTCA+AGG | + | chr1_3:7564510-7564529 | None:intergenic | 40.0% | |
| CAACAGCCAATTCTTATCTG+AGG | + | chr1_3:7564573-7564592 | None:intergenic | 40.0% | |
| CTCAGATAAGAATTGGCTGT+TGG | - | chr1_3:7564571-7564590 | Msa0101070:intron | 40.0% | |
| AAGAGGCCAATGATTTCTCA+TGG | + | chr1_3:7564612-7564631 | None:intergenic | 40.0% | |
| !!! | TGAAGTAGTTTTGGTTTCGC+TGG | - | chr1_3:7564682-7564701 | Msa0101070:intron | 40.0% |
| TTGGTTTCGCTGGTATTCAA+CGG | - | chr1_3:7564692-7564711 | Msa0101070:intron | 40.0% | |
| AAGATCTCACCAGGATTTGA+AGG | - | chr1_3:7564721-7564740 | Msa0101070:intron | 40.0% | |
| ATTTGAGAGCCTTCAAATCC+TGG | + | chr1_3:7564733-7564752 | None:intergenic | 40.0% | |
| TCTACTTGCAATAGTCCACA+TGG | - | chr1_3:7564846-7564865 | Msa0101070:intron | 40.0% | |
| ! | GTTTTTCCACTATGTGGTCA+AGG | - | chr1_3:7564255-7564274 | Msa0101070:CDS | 40.0% |
| TTTCTACCTTGACCACATAG+TGG | + | chr1_3:7564264-7564283 | None:intergenic | 40.0% | |
| AGAGAGAAGAGGGTTGAAAT+AGG | + | chr1_3:7564348-7564367 | None:intergenic | 40.0% | |
| GGAATTCATGAAGAGAGAAG+AGG | + | chr1_3:7564359-7564378 | None:intergenic | 40.0% | |
| ACCGAGAATTGTTTCAGTCA+AGG | + | chr1_3:7564510-7564529 | None:intergenic | 40.0% | |
| CAACAGCCAATTCTTATCTG+AGG | + | chr1_3:7564573-7564592 | None:intergenic | 40.0% | |
| CTCAGATAAGAATTGGCTGT+TGG | - | chr1_3:7564571-7564590 | Msa0101070:intron | 40.0% | |
| AAGAGGCCAATGATTTCTCA+TGG | + | chr1_3:7564612-7564631 | None:intergenic | 40.0% | |
| !!! | TGAAGTAGTTTTGGTTTCGC+TGG | - | chr1_3:7564682-7564701 | Msa0101070:intron | 40.0% |
| TTGGTTTCGCTGGTATTCAA+CGG | - | chr1_3:7564692-7564711 | Msa0101070:intron | 40.0% | |
| AAGATCTCACCAGGATTTGA+AGG | - | chr1_3:7564721-7564740 | Msa0101070:intron | 40.0% | |
| ATTTGAGAGCCTTCAAATCC+TGG | + | chr1_3:7564733-7564752 | None:intergenic | 40.0% | |
| TCTACTTGCAATAGTCCACA+TGG | - | chr1_3:7564846-7564865 | Msa0101070:intron | 40.0% | |
| TTCGCTGGTATTCAACGGAT+TGG | - | chr1_3:7564697-7564716 | Msa0101070:intron | 45.0% | |
| TTCGCTGGTATTCAACGGAT+TGG | - | chr1_3:7564697-7564716 | Msa0101070:intron | 45.0% | |
| ! | CGGATTGGAAAGATCTCACC+AGG | - | chr1_3:7564712-7564731 | Msa0101070:intron | 50.0% |
| ! | CGGATTGGAAAGATCTCACC+AGG | - | chr1_3:7564712-7564731 | Msa0101070:intron | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 7564051 | 7565005 | 7564051 | ID=Msa0101070;Name=Msa0101070 |
| chr1_3 | mRNA | 7564051 | 7565005 | 7564051 | ID=Msa0101070-mRNA-1;Parent=Msa0101070;Name=Msa0101070-mRNA-1;_AED=0.45;_eAED=0.62;_QI=0|0|0|0.5|1|1|2|0|107 |
| chr1_3 | exon | 7564998 | 7565005 | 7564998 | ID=Msa0101070-mRNA-1:exon:2999;Parent=Msa0101070-mRNA-1 |
| chr1_3 | exon | 7564051 | 7564366 | 7564051 | ID=Msa0101070-mRNA-1:exon:2998;Parent=Msa0101070-mRNA-1 |
| chr1_3 | CDS | 7564998 | 7565005 | 7564998 | ID=Msa0101070-mRNA-1:cds;Parent=Msa0101070-mRNA-1 |
| chr1_3 | CDS | 7564051 | 7564366 | 7564051 | ID=Msa0101070-mRNA-1:cds;Parent=Msa0101070-mRNA-1 |
| Gene Sequence |
| Protein sequence |
