AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0141550


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0141550 MtrunA17_Chr7g0255551 84.881 377 30 2 1 350 1 377 0.0 637
Msa0141550 MtrunA17_Chr7g0234801 49.288 351 152 4 15 339 28 378 7.20e-107 323
Msa0141550 MtrunA17_Chr8g0377771 48.711 349 153 4 15 337 32 380 1.22e-105 321
Msa0141550 MtrunA17_Chr8g0339141 49.254 335 142 4 33 339 52 386 7.54e-98 301
Msa0141550 MtrunA17_Chr8g0352971 44.970 338 153 7 36 343 14 348 1.79e-82 256
Msa0141550 MtrunA17_Chr8g0352971 30.899 178 112 4 21 192 120 292 5.21e-20 90.5
Msa0141550 MtrunA17_Chr8g0338001 37.786 262 124 8 119 346 43 299 1.16e-34 131
Msa0141550 MtrunA17_Chr8g0338001 30.380 158 99 4 21 172 61 213 4.35e-12 67.0
Msa0141550 MtrunA17_Chr8g0338001 30.252 119 76 3 22 133 179 297 5.19e-11 63.5
Msa0141550 MtrunA17_Chr4g0027201 29.282 362 211 8 15 337 29 384 4.51e-29 118
Msa0141550 MtrunA17_Chr8g0336421 45.139 144 73 2 206 343 36 179 3.69e-28 114
Msa0141550 MtrunA17_Chr8g0336421 32.292 96 60 1 82 172 2 97 5.18e-11 63.5
Msa0141550 MtrunA17_Chr1g0152361 34.450 209 107 6 160 339 4 211 2.64e-26 107
Msa0141550 MtrunA17_Chr1g0152361 29.851 134 87 2 44 172 4 135 1.06e-12 68.6
Msa0141550 MtrunA17_Chr1g0152361 33.621 116 73 2 13 124 92 207 1.12e-11 65.5
Msa0141550 MtrunA17_Chr1g0152351 40.426 141 79 2 19 159 61 196 4.53e-26 103
Msa0141550 MtrunA17_Chr1g0152351 34.307 137 72 5 130 249 56 191 2.25e-13 68.2
Msa0141550 MtrunA17_Chr8g0339171 50.000 86 43 0 39 124 50 135 2.09e-24 97.4
Msa0141550 MtrunA17_Chr8g0338181 47.863 117 54 2 237 346 2 118 3.56e-20 86.3
Msa0141550 MtrunA17_Chr8g0338181 29.565 115 74 3 26 133 2 116 6.65e-11 60.1
Msa0141550 MtrunA17_Chr5g0435521 39.640 111 64 2 18 125 9 119 7.49e-20 86.3
Msa0141550 MtrunA17_Chr4g0052911 38.144 97 49 2 39 124 141 237 2.18e-16 77.8
Msa0141550 MtrunA17_Chr2g0279511 44.954 109 54 4 21 124 2 109 1.53e-15 72.0
Msa0141550 MtrunA17_Chr4g0014351 36.782 87 53 2 39 124 781 866 1.81e-12 68.6
Msa0141550 MtrunA17_Chr5g0396231 39.773 88 48 2 39 124 413 497 6.90e-12 66.6
Msa0141550 MtrunA17_Chr4g0033841 36.559 93 55 2 35 123 126 218 2.70e-11 62.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0141550 AT5G48570.1 47.875 353 155 5 16 339 42 394 1.77e-104 318
Msa0141550 AT3G25230.1 46.839 348 158 4 19 339 37 384 1.05e-100 308
Msa0141550 AT3G25230.2 46.839 348 158 4 19 339 37 384 2.16e-100 307
Msa0141550 AT3G54010.1 28.933 356 220 7 15 337 27 382 9.89e-29 117
Msa0141550 AT5G48580.1 50.575 87 43 0 39 125 52 138 1.91e-25 100
Msa0141550 AT3G54010.2 29.110 292 178 6 75 337 1 292 1.47e-22 99.0
Msa0141550 AT3G25220.1 45.977 87 47 0 39 125 52 138 2.53e-22 92.0
Msa0141550 AT5G45680.1 41.237 97 46 2 39 124 109 205 6.70e-18 81.6
Msa0141550 AT3G55520.2 40.541 111 63 2 18 125 9 119 8.83e-18 80.9
Msa0141550 AT3G55520.3 40.541 111 63 2 18 125 9 119 8.83e-18 80.9
Msa0141550 AT3G55520.1 40.541 111 63 2 18 125 9 119 8.83e-18 80.9
Msa0141550 AT4G25340.1 44.828 87 46 2 39 124 389 474 4.30e-14 73.6
Msa0141550 AT5G64350.1 42.202 109 57 4 21 124 2 109 1.41e-13 67.0
Msa0141550 AT5G05420.1 39.080 87 50 3 39 124 56 140 2.96e-11 61.2
Msa0141550 AT2G43560.2 36.559 93 55 2 35 123 64 156 4.84e-11 61.2
Msa0141550 AT2G43560.1 36.559 93 55 2 35 123 120 212 5.08e-11 62.4

Find 72 sgRNAs with CRISPR-Local

Find 136 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCCTTAGCATATGGGGAAAA+AGG 0.224851 1_3:-76713735 Msa0141550:CDS
TTTAGAGGACAAGTTGAAAA+TGG 0.239425 1_3:-76714078 Msa0141550:CDS
TGTTTCCTTGCAAATTATTA+TGG 0.255043 1_3:+76712027 None:intergenic
AAGAAAGGATAAGCCGTTAT+TGG 0.257717 1_3:+76714395 None:intergenic
AGCACTTCGTCAAGCTCTTT+TGG 0.259101 1_3:+76713576 None:intergenic
TCCTCCTTTCATTTCAAATT+AGG 0.262521 1_3:-76714024 Msa0141550:CDS
TATGAAGCAAGGCTTGAAAA+TGG 0.287212 1_3:-76713388 Msa0141550:CDS
GGAGGACCCTTTATCATAAC+TGG 0.291396 1_3:+76714041 None:intergenic
CTAATTCAACTTCATAATAA+AGG 0.298118 1_3:+76711988 None:intergenic
CATTGTGCTTGATGATTTAC+CGG 0.300048 1_3:-76712743 Msa0141550:CDS
CTAGAATCCAGTTATGATAA+AGG 0.306276 1_3:-76714048 Msa0141550:CDS
TCAACTTGGTCACCAGAAAA+TGG 0.313030 1_3:+76714214 None:intergenic
GAATTTGTACTCAAGCAAAT+TGG 0.323192 1_3:-76714289 Msa0141550:CDS
ATACCACCTTCCTTAGCATA+TGG 0.402959 1_3:-76713744 Msa0141550:CDS
ATGCTTATCAAATCTGATAA+AGG 0.408014 1_3:-76713364 Msa0141550:CDS
TCTTGAGTTGTGAACTCAAA+AGG 0.411624 1_3:+76712251 None:intergenic
GAGGTTCAAGTTTCTAAGAA+AGG 0.418599 1_3:+76714380 None:intergenic
TAGAATCCAGTTATGATAAA+GGG 0.435416 1_3:-76714047 Msa0141550:CDS
CTCAAGCAAATTGGAAATGA+AGG 0.438893 1_3:-76714280 Msa0141550:CDS
ATGTTAATTAAATTAGAATC+CGG 0.462155 1_3:+76712724 None:intergenic
GTAATCAAAGGTTGGGATGA+AGG 0.465069 1_3:-76713807 Msa0141550:CDS
AATTAACATCAAACTTGAGC+TGG 0.466397 1_3:-76712710 Msa0141550:CDS
ATGAAGCAAGGCTTGAAAAT+GGG 0.472246 1_3:-76713387 Msa0141550:CDS
TCAAACTTGAGCTGGTATCA+TGG 0.473440 1_3:-76712702 Msa0141550:CDS
TACCACCTTCCTTAGCATAT+GGG 0.479812 1_3:-76713743 Msa0141550:CDS
ACAGTCATATATTTATGTAA+AGG 0.483204 1_3:-76712317 Msa0141550:intron
TTGGCCTAATTTGAAATGAA+AGG 0.504691 1_3:+76714020 None:intergenic
GGAGTTGCTACTATGAAGAA+AGG 0.505200 1_3:-76713786 Msa0141550:CDS
TGTGACCATAATAATTTGCA+AGG 0.505868 1_3:-76712032 Msa0141550:CDS
ACTAAACAGATTCTTAGAAA+AGG 0.511190 1_3:-76714253 Msa0141550:CDS
AATAAGAGAAGGAGAAGGAT+GGG 0.511511 1_3:-76713604 Msa0141550:CDS
AGGTGAAGTAATCAAAGGTT+GGG 0.511565 1_3:-76713814 Msa0141550:CDS
AAAATTAATAAAGCCGGTGA+AGG 0.513957 1_3:-76712637 Msa0141550:CDS
GAGTTGCTACTATGAAGAAA+GGG 0.516922 1_3:-76713785 Msa0141550:CDS
TTTCATTTCAAATTAGGCCA+AGG 0.520262 1_3:-76714018 Msa0141550:intron
TTCACATGTGATCCTTCGTT+AGG 0.525931 1_3:+76712604 None:intergenic
CAGGTGAAGTAATCAAAGGT+TGG 0.528283 1_3:-76713815 Msa0141550:CDS
TTTGAGTTCACAACTCAAGA+AGG 0.528628 1_3:-76712248 Msa0141550:intron
TATTTATGTAAAGGAGAAGA+TGG 0.534404 1_3:-76712308 Msa0141550:CDS
TTCTTAGAAAAGGTGTCACT+TGG 0.537175 1_3:-76714243 Msa0141550:CDS
AGGACGATCAAACCCTTCAC+CGG 0.540522 1_3:+76712624 None:intergenic
AGAGACTTGACTGGCGATGG+AGG 0.548906 1_3:-76713642 Msa0141550:CDS
TAACAGTGAAATATGAAGCA+AGG 0.549042 1_3:-76713399 Msa0141550:intron
TTGAGATTGAAATGTTGTGT+TGG 0.551476 1_3:-76713674 Msa0141550:CDS
TCCCCATATGCTAAGGAAGG+TGG 0.559182 1_3:+76713741 None:intergenic
AAAAGGAGGGAAACCAATAA+CGG 0.563551 1_3:-76714408 None:intergenic
TAATAATTTGCAAGGAAACA+AGG 0.565902 1_3:-76712024 Msa0141550:CDS
AAGACAATAAGAGAAGGAGA+AGG 0.572354 1_3:-76713609 Msa0141550:CDS
ACCACCTTCCTTAGCATATG+GGG 0.572462 1_3:-76713742 Msa0141550:CDS
CAATAAGAGAAGGAGAAGGA+TGG 0.574904 1_3:-76713605 Msa0141550:CDS
AAAGAGCTTGACGAAGTGCT+AGG 0.575587 1_3:-76713573 Msa0141550:intron
TATTGAGAGGAAAGGATCAA+AGG 0.577291 1_3:-76712279 Msa0141550:CDS
GTTGCAGGTGAAGTAATCAA+AGG 0.579564 1_3:-76713819 Msa0141550:intron
AAAATGAGGGTTGCATTAGG+AGG 0.583306 1_3:+76713696 None:intergenic
ATCAGAGACTTGACTGGCGA+TGG 0.591477 1_3:-76713645 Msa0141550:CDS
TAACGAAGGATCACATGTGA+AGG 0.593129 1_3:-76712602 Msa0141550:CDS
AAAATTGTTACTGATATCAC+AGG 0.593289 1_3:-76712679 Msa0141550:CDS
AAATTAATAAAGCCGGTGAA+GGG 0.595153 1_3:-76712636 Msa0141550:CDS
GGTACTATTATTGAGAGGAA+AGG 0.598644 1_3:-76712287 Msa0141550:CDS
GCCTAATTTGAAATGAAAGG+AGG 0.601174 1_3:+76714023 None:intergenic
TATCAAATCTGATAAAGGTG+TGG 0.628019 1_3:-76713359 Msa0141550:CDS
TTATCATAACTGGATTCTAG+AGG 0.629531 1_3:+76714051 None:intergenic
CGGTAAATCATCAAGCACAA+TGG 0.630118 1_3:+76712744 None:intergenic
AACGAAGGATCACATGTGAA+GGG 0.640374 1_3:-76712601 Msa0141550:intron
AAGATGGTACTATTATTGAG+AGG 0.645458 1_3:-76712292 Msa0141550:CDS
AGTAGCATCAGAGACTTGAC+TGG 0.654428 1_3:-76713651 Msa0141550:CDS
GTGGAGTTTAATGTAAGTGA+TGG 0.656067 1_3:-76713340 Msa0141550:intron
TGAATTAGTTGATTTCACCA+AGG 0.661687 1_3:-76711973 Msa0141550:intron
AGTTGCTACTATGAAGAAAG+GGG 0.665518 1_3:-76713784 Msa0141550:CDS
GGGTTTGATCGTCCTAACGA+AGG 0.667918 1_3:-76712616 Msa0141550:CDS
GTTGCATTAGGAGGAATCAA+CGG 0.669552 1_3:+76713705 None:intergenic
GCATTAGGAGGAATCAACGG+CGG 0.744191 1_3:+76713708 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTGATGTTACTTTTAAATT+AGG - chr1_3:76712241-76712260 Msa0141550:intron 15.0%
!! TTAAATTAGTAGTATATGTA+CGG + chr1_3:76712684-76712703 None:intergenic 15.0%
!! TTAATAATATGACTAATATC+AGG - chr1_3:76713289-76713308 Msa0141550:intron 15.0%
!! ATGTTAATTAAATTAGAATC+CGG + chr1_3:76713379-76713398 None:intergenic 15.0%
!!! TGATTTATTTTTACTTTTGT+TGG + chr1_3:76713724-76713743 None:intergenic 15.0%
!! AAAGAGATAAAAAGAGAAAA+AGG + chr1_3:76711748-76711767 None:intergenic 20.0%
!! GAAATGAATATGAAATTCTT+TGG - chr1_3:76712217-76712236 Msa0141550:intron 20.0%
!!! ATTTTTATTTTTGCTGCATA+AGG - chr1_3:76713249-76713268 Msa0141550:intron 20.0%
!! CTGAAAAAAATTAATAAAGC+CGG - chr1_3:76713457-76713476 Msa0141550:intron 20.0%
!! ACAGTCATATATTTATGTAA+AGG - chr1_3:76713783-76713802 Msa0141550:CDS 20.0%
!! ATTGATGTTATACAAGAATA+AGG - chr1_3:76713881-76713900 Msa0141550:intron 20.0%
!! TTGATGTTATACAAGAATAA+GGG - chr1_3:76713882-76713901 Msa0141550:intron 20.0%
!! CTAATTCAACTTCATAATAA+AGG + chr1_3:76714115-76714134 None:intergenic 20.0%
! ATAAAAAGAGAAAAAGGAAG+AGG + chr1_3:76711742-76711761 None:intergenic 25.0%
! ACTAAACAGATTCTTAGAAA+AGG - chr1_3:76711847-76711866 Msa0141550:intron 25.0%
! ATAGTTAGAGAGTGATAATA+TGG + chr1_3:76711922-76711941 None:intergenic 25.0%
! TAGAATCCAGTTATGATAAA+GGG - chr1_3:76712053-76712072 Msa0141550:CDS 25.0%
!! TTTCTGTCTATAATTTTCGT+CGG + chr1_3:76712151-76712170 None:intergenic 25.0%
! TTAGGCTAAGTTATTGAATT+TGG - chr1_3:76712259-76712278 Msa0141550:CDS 25.0%
! CATTTCAATCTCAAAAATGA+GGG + chr1_3:76712420-76712439 None:intergenic 25.0%
! ACATTTCAATCTCAAAAATG+AGG + chr1_3:76712421-76712440 None:intergenic 25.0%
! ATGAAAAAGACAATAAGAGA+AGG - chr1_3:76712485-76712504 Msa0141550:intron 25.0%
! ATGCTTATCAAATCTGATAA+AGG - chr1_3:76712736-76712755 Msa0141550:CDS 25.0%
!! AGCATTAAAGACTTTACTTT+TGG - chr1_3:76712796-76712815 Msa0141550:intron 25.0%
! AAACAGTAGTAGATATTCAA+TGG + chr1_3:76713005-76713024 None:intergenic 25.0%
! AAAATTGTTACTGATATCAC+AGG - chr1_3:76713421-76713440 Msa0141550:intron 25.0%
! ATCACATCTATTTATGTATG+AGG + chr1_3:76713534-76713553 None:intergenic 25.0%
! GACAGTAGTTAAAAATTTGA+CGG - chr1_3:76713591-76713610 Msa0141550:CDS 25.0%
! AGTTAAAAATTTGACGGTTA+AGG - chr1_3:76713597-76713616 Msa0141550:CDS 25.0%
!! ACTTTTGTTGGAAATAGATT+CGG + chr1_3:76713712-76713731 None:intergenic 25.0%
! TATTTATGTAAAGGAGAAGA+TGG - chr1_3:76713792-76713811 Msa0141550:CDS 25.0%
! TGTTTCCTTGCAAATTATTA+TGG + chr1_3:76714076-76714095 None:intergenic 25.0%
!! TAATAATTTGCAAGGAAACA+AGG - chr1_3:76714076-76714095 Msa0141550:CDS 25.0%
!!! NNGTTGATGTTTTGAATTGA+TGG + chr1_3:76714185-76714204 None:intergenic 25.0%
! ATCAAACTTCTAACAAACAT+AGG + chr1_3:76714367-76714386 None:intergenic 25.0%
GAATTTGTACTCAAGCAAAT+TGG - chr1_3:76711811-76711830 Msa0141550:intron 30.0%
! ATGGTTTTTAACCTTCAACT+TGG + chr1_3:76711903-76711922 None:intergenic 30.0%
TGGTACAAACATAAAACAAG+TGG + chr1_3:76711947-76711966 None:intergenic 30.0%
TTGTACCATAAGTCAGATAA+AGG - chr1_3:76711959-76711978 Msa0141550:intron 30.0%
TGTACCATAAGTCAGATAAA+GGG - chr1_3:76711960-76711979 Msa0141550:intron 30.0%
! TTTAGAGGACAAGTTGAAAA+TGG - chr1_3:76712022-76712041 Msa0141550:CDS 30.0%
TTATCATAACTGGATTCTAG+AGG + chr1_3:76712052-76712071 None:intergenic 30.0%
CTAGAATCCAGTTATGATAA+AGG - chr1_3:76712052-76712071 Msa0141550:CDS 30.0%
TCCTCCTTTCATTTCAAATT+AGG - chr1_3:76712076-76712095 Msa0141550:CDS 30.0%
! TTGGCCTAATTTGAAATGAA+AGG + chr1_3:76712083-76712102 None:intergenic 30.0%
TTTCATTTCAAATTAGGCCA+AGG - chr1_3:76712082-76712101 Msa0141550:CDS 30.0%
! AATAAACAAGGTACTTACCT+TGG + chr1_3:76712102-76712121 None:intergenic 30.0%
AAGTTATTGAATTTGGTTGC+AGG - chr1_3:76712266-76712285 Msa0141550:CDS 30.0%
TTGAGATTGAAATGTTGTGT+TGG - chr1_3:76712426-76712445 Msa0141550:intron 30.0%
TAACAGTGAAATATGAAGCA+AGG - chr1_3:76712701-76712720 Msa0141550:CDS 30.0%
TATCAAATCTGATAAAGGTG+TGG - chr1_3:76712741-76712760 Msa0141550:CDS 30.0%
ACCATCTGATATTTATCCAA+CGG - chr1_3:76712927-76712946 Msa0141550:intron 30.0%
! AATATTGACTGCAGAGAATT+TGG - chr1_3:76712977-76712996 Msa0141550:intron 30.0%
ATAGAATACTGATCAATCTC+TGG - chr1_3:76713071-76713090 Msa0141550:intron 30.0%
TAGAATACTGATCAATCTCT+GGG - chr1_3:76713072-76713091 Msa0141550:intron 30.0%
AATTAACATCAAACTTGAGC+TGG - chr1_3:76713390-76713409 Msa0141550:CDS 30.0%
AAAATTAATAAAGCCGGTGA+AGG - chr1_3:76713463-76713482 Msa0141550:intron 30.0%
AAATTAATAAAGCCGGTGAA+GGG - chr1_3:76713464-76713483 Msa0141550:intron 30.0%
AAGATGGTACTATTATTGAG+AGG - chr1_3:76713808-76713827 Msa0141550:CDS 30.0%
! TGTGACCATAATAATTTGCA+AGG - chr1_3:76714068-76714087 Msa0141550:CDS 30.0%
! TGAATTAGTTGATTTCACCA+AGG - chr1_3:76714127-76714146 Msa0141550:intron 30.0%
! GAGGTTCAAGTTTCTAAGAA+AGG + chr1_3:76711723-76711742 None:intergenic 35.0%
!!! TTTTGTAGAGAGAGTGTCAT+TGG + chr1_3:76711781-76711800 None:intergenic 35.0%
CTCAAGCAAATTGGAAATGA+AGG - chr1_3:76711820-76711839 Msa0141550:intron 35.0%
!! TTCTTAGAAAAGGTGTCACT+TGG - chr1_3:76711857-76711876 Msa0141550:intron 35.0%
ATGACCCTTTATCTGACTTA+TGG + chr1_3:76711967-76711986 None:intergenic 35.0%
! CACCTTTCAGTTCATTTTAG+AGG - chr1_3:76712007-76712026 Msa0141550:CDS 35.0%
!! GTCCTCTAAAATGAACTGAA+AGG + chr1_3:76712012-76712031 None:intergenic 35.0%
! GCCTAATTTGAAATGAAAGG+AGG + chr1_3:76712080-76712099 None:intergenic 35.0%
CTAGCAGTATGCAATAAACA+AGG + chr1_3:76712114-76712133 None:intergenic 35.0%
AGGTGAAGTAATCAAAGGTT+GGG - chr1_3:76712286-76712305 Msa0141550:CDS 35.0%
GAGTTGCTACTATGAAGAAA+GGG - chr1_3:76712315-76712334 Msa0141550:CDS 35.0%
AGTTGCTACTATGAAGAAAG+GGG - chr1_3:76712316-76712335 Msa0141550:CDS 35.0%
TCAAAAATGAGGGTTGCATT+AGG + chr1_3:76712410-76712429 None:intergenic 35.0%
AAGACAATAAGAGAAGGAGA+AGG - chr1_3:76712491-76712510 Msa0141550:intron 35.0%
AATAAGAGAAGGAGAAGGAT+GGG - chr1_3:76712496-76712515 Msa0141550:intron 35.0%
TATGAAGCAAGGCTTGAAAA+TGG - chr1_3:76712712-76712731 Msa0141550:CDS 35.0%
ATGAAGCAAGGCTTGAAAAT+GGG - chr1_3:76712713-76712732 Msa0141550:CDS 35.0%
GTGGAGTTTAATGTAAGTGA+TGG - chr1_3:76712760-76712779 Msa0141550:CDS 35.0%
GCAGTAAAGACAATGAGAAA+AGG - chr1_3:76713134-76713153 Msa0141550:intron 35.0%
! TCAGGACATAATTTTGCAGA+TGG - chr1_3:76713307-76713326 Msa0141550:intron 35.0%
! CATTGTGCTTGATGATTTAC+CGG - chr1_3:76713357-76713376 Msa0141550:CDS 35.0%
CAATGTGAGTCATTCAATCT+CGG - chr1_3:76713646-76713665 Msa0141550:CDS 35.0%
GGTACTATTATTGAGAGGAA+AGG - chr1_3:76713813-76713832 Msa0141550:CDS 35.0%
TATTGAGAGGAAAGGATCAA+AGG - chr1_3:76713821-76713840 Msa0141550:intron 35.0%
! TCTTGAGTTGTGAACTCAAA+AGG + chr1_3:76713852-76713871 None:intergenic 35.0%
! TTTGAGTTCACAACTCAAGA+AGG - chr1_3:76713852-76713871 Msa0141550:intron 35.0%
! TTTTCAGAACAAGTGCATGA+CGG - chr1_3:76713975-76713994 Msa0141550:intron 35.0%
TACATAGAAGAAGCTAACCT+TGG + chr1_3:76714147-76714166 None:intergenic 35.0%
! ACATTTCATTTTCGCGACAA+GGG + chr1_3:76714341-76714360 None:intergenic 35.0%
! AACATTTCATTTTCGCGACA+AGG + chr1_3:76714342-76714361 None:intergenic 35.0%
! ACTTGGCAAACTCCATTTTC+TGG - chr1_3:76711874-76711893 Msa0141550:intron 40.0%
TCAACTTGGTCACCAGAAAA+TGG + chr1_3:76711889-76711908 None:intergenic 40.0%
!! TTTTCTGGTGACCAAGTTGA+AGG - chr1_3:76711889-76711908 Msa0141550:intron 40.0%
GTTGCAGGTGAAGTAATCAA+AGG - chr1_3:76712281-76712300 Msa0141550:CDS 40.0%
CAGGTGAAGTAATCAAAGGT+TGG - chr1_3:76712285-76712304 Msa0141550:CDS 40.0%
GTAATCAAAGGTTGGGATGA+AGG - chr1_3:76712293-76712312 Msa0141550:CDS 40.0%
GGAGTTGCTACTATGAAGAA+AGG - chr1_3:76712314-76712333 Msa0141550:CDS 40.0%
ATACCACCTTCCTTAGCATA+TGG - chr1_3:76712356-76712375 Msa0141550:intron 40.0%
TACCACCTTCCTTAGCATAT+GGG - chr1_3:76712357-76712376 Msa0141550:intron 40.0%
! TTTTCCCCATATGCTAAGGA+AGG + chr1_3:76712365-76712384 None:intergenic 40.0%
TCCTTAGCATATGGGGAAAA+AGG - chr1_3:76712365-76712384 Msa0141550:intron 40.0%
! ACCTTTTTCCCCATATGCTA+AGG + chr1_3:76712369-76712388 None:intergenic 40.0%
GTTGCATTAGGAGGAATCAA+CGG + chr1_3:76712398-76712417 None:intergenic 40.0%
AAAATGAGGGTTGCATTAGG+AGG + chr1_3:76712407-76712426 None:intergenic 40.0%
CAATAAGAGAAGGAGAAGGA+TGG - chr1_3:76712495-76712514 Msa0141550:intron 40.0%
GATAGAATATCAGATGACCG+AGG - chr1_3:76712870-76712889 Msa0141550:intron 40.0%
CAAATGAAAACTCGAGACCT+CGG + chr1_3:76712890-76712909 None:intergenic 40.0%
GCCGTTGGATAAATATCAGA+TGG + chr1_3:76712931-76712950 None:intergenic 40.0%
!! ATCTCTGGGATGCTTCAATT+AGG - chr1_3:76713086-76713105 Msa0141550:intron 40.0%
TGTCTTTACTGCAATGCTCA+TGG + chr1_3:76713126-76713145 None:intergenic 40.0%
CGGTAAATCATCAAGCACAA+TGG + chr1_3:76713359-76713378 None:intergenic 40.0%
TCAAACTTGAGCTGGTATCA+TGG - chr1_3:76713398-76713417 Msa0141550:intron 40.0%
TTCACATGTGATCCTTCGTT+AGG + chr1_3:76713499-76713518 None:intergenic 40.0%
TAACGAAGGATCACATGTGA+AGG - chr1_3:76713498-76713517 Msa0141550:intron 40.0%
AACGAAGGATCACATGTGAA+GGG - chr1_3:76713499-76713518 Msa0141550:intron 40.0%
GAAAAAAGCAGAACAAGCTC+TGG - chr1_3:76714022-76714041 Msa0141550:CDS 40.0%
GGAGGACCCTTTATCATAAC+TGG + chr1_3:76712062-76712081 None:intergenic 45.0%
ACCACCTTCCTTAGCATATG+GGG - chr1_3:76712358-76712377 Msa0141550:intron 45.0%
AGTAGCATCAGAGACTTGAC+TGG - chr1_3:76712449-76712468 Msa0141550:intron 45.0%
! AGCACTTCGTCAAGCTCTTT+TGG + chr1_3:76712527-76712546 None:intergenic 45.0%
! AAAGAGCTTGACGAAGTGCT+AGG - chr1_3:76712527-76712546 Msa0141550:intron 45.0%
TTTACTGCAATGCTCATGGC+TGG + chr1_3:76713122-76713141 None:intergenic 45.0%
GACAATGAGAAAAGGCGAAG+TGG - chr1_3:76713142-76713161 Msa0141550:intron 45.0%
CATCGACAGTAGTGACTGTT+GGG + chr1_3:76713567-76713586 None:intergenic 45.0%
TCATCGACAGTAGTGACTGT+TGG + chr1_3:76713568-76713587 None:intergenic 45.0%
ACAGTCACTACTGTCGATGA+TGG - chr1_3:76713568-76713587 Msa0141550:intron 45.0%
CAGTCACTACTGTCGATGAT+GGG - chr1_3:76713569-76713588 Msa0141550:intron 45.0%
!! GGAAATAGATTCGGTGCAGT+CGG + chr1_3:76713703-76713722 None:intergenic 45.0%
TCCCCATATGCTAAGGAAGG+TGG + chr1_3:76712362-76712381 None:intergenic 50.0%
GCATTAGGAGGAATCAACGG+CGG + chr1_3:76712395-76712414 None:intergenic 50.0%
ATCAGAGACTTGACTGGCGA+TGG - chr1_3:76712455-76712474 Msa0141550:intron 50.0%
AGGACGATCAAACCCTTCAC+CGG + chr1_3:76713479-76713498 None:intergenic 50.0%
GGGTTTGATCGTCCTAACGA+AGG - chr1_3:76713484-76713503 Msa0141550:intron 50.0%
AGAGACTTGACTGGCGATGG+AGG - chr1_3:76712458-76712477 Msa0141550:intron 55.0%
GTGCGAGCAATCTAAGCCGT+TGG + chr1_3:76712946-76712965 None:intergenic 55.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 76711706 76714416 76711706 ID=Msa0141550;Name=Msa0141550
chr1_3 mRNA 76711706 76714416 76711706 ID=Msa0141550-mRNA-1;Parent=Msa0141550;Name=Msa0141550-mRNA-1;_AED=0.15;_eAED=0.15;_QI=75|0.71|0.62|0.87|1|1|8|0|351
chr1_3 exon 76711706 76711744 76711706 ID=Msa0141550-mRNA-1:exon:26761;Parent=Msa0141550-mRNA-1
chr1_3 exon 76711974 76712140 76711974 ID=Msa0141550-mRNA-1:exon:26760;Parent=Msa0141550-mRNA-1
chr1_3 exon 76712249 76712335 76712249 ID=Msa0141550-mRNA-1:exon:26759;Parent=Msa0141550-mRNA-1
chr1_3 exon 76712602 76712811 76712602 ID=Msa0141550-mRNA-1:exon:26758;Parent=Msa0141550-mRNA-1
chr1_3 exon 76713341 76713415 76713341 ID=Msa0141550-mRNA-1:exon:26757;Parent=Msa0141550-mRNA-1
chr1_3 exon 76713574 76713834 76713574 ID=Msa0141550-mRNA-1:exon:26756;Parent=Msa0141550-mRNA-1
chr1_3 exon 76714019 76714105 76714019 ID=Msa0141550-mRNA-1:exon:26755;Parent=Msa0141550-mRNA-1
chr1_3 exon 76714212 76714416 76714212 ID=Msa0141550-mRNA-1:exon:26754;Parent=Msa0141550-mRNA-1
chr1_3 five_prime_UTR 76714342 76714416 76714342 ID=Msa0141550-mRNA-1:five_prime_utr;Parent=Msa0141550-mRNA-1
chr1_3 CDS 76714212 76714341 76714212 ID=Msa0141550-mRNA-1:cds;Parent=Msa0141550-mRNA-1
chr1_3 CDS 76714019 76714105 76714019 ID=Msa0141550-mRNA-1:cds;Parent=Msa0141550-mRNA-1
chr1_3 CDS 76713574 76713834 76713574 ID=Msa0141550-mRNA-1:cds;Parent=Msa0141550-mRNA-1
chr1_3 CDS 76713341 76713415 76713341 ID=Msa0141550-mRNA-1:cds;Parent=Msa0141550-mRNA-1
chr1_3 CDS 76712602 76712811 76712602 ID=Msa0141550-mRNA-1:cds;Parent=Msa0141550-mRNA-1
chr1_3 CDS 76712249 76712335 76712249 ID=Msa0141550-mRNA-1:cds;Parent=Msa0141550-mRNA-1
chr1_3 CDS 76711974 76712140 76711974 ID=Msa0141550-mRNA-1:cds;Parent=Msa0141550-mRNA-1
chr1_3 CDS 76711706 76711744 76711706 ID=Msa0141550-mRNA-1:cds;Parent=Msa0141550-mRNA-1
Gene Sequence

>Msa0141550

ATGACACTCTCTCTACAAAATGAAGACTCAGAATTTGTACTCAAGCAAATTGGAAATGAAGGTCTCACTAAACAGATTCTTAGAAAAGGTGTCACTTGGCAAACTCCATTTTCTGGTGACCAAGTTGAAGTTCATTTTAGAGGACAAGTTGAAAATGGACTACCTCTAGAATCCAGTTATGATAAAGGGTCCTCCTTTCATTTCAAATTAGGCCAAGGTGAAGTAATCAAAGGTTGGGATGAAGGAGTTGCTACTATGAAGAAAGGGGAGAGAGCAATCTTCAAAATACCACCTTCCTTAGCATATGGGGAAAAAGGTTCTCCGCCGTTGATTCCTCCTAATGCAACCCTCATTTTTGAGATTGAAATGTTGTGTTGGAGTAGCATCAGAGACTTGACTGGCGATGGAGGAATCATGAAAAAGACAATAAGAGAAGGAGAAGGATGGGCTACTCCAAAAGAGCTTGACGAAGTGCTAGTGAAATATGAAGCAAGGCTTGAAAATGGGATGCTTATCAAATCTGATAAAGGTGTGGAGTTTAATGTAAGTGATGGACATAATTTTGCAGATGGCGTTATTAGTCAAAATTCAAATAGAACCATTGTGCTTGATGATTTACCGGATTCTAATTTAATTAACATCAAACTTGAGCTGGTATCATGGAAAATTGTTACTGATATCACAGGAGATAAGAAAATACTGAAAAAAATTAATAAAGCCGGTGAAGGGTTTGATCGTCCTAACGAAGGATCACATGTGAAGGTCATATATTTATGTAAAGGAGAAGATGGTACTATTATTGAGAGGAAAGGATCAAAGGAAGAACCTTTTGAGTTCACAACTCAAGAAGAACAAGTGCATGACGGTCTAGAAAGAGCAGTATTGACAATGAAAAAAGCAGAACAAGCTCTGGTGACTATCAATGCTGAAAATTTGTGTGACCATAATAATTTGCAAGGAAACAAGGCTAATAATAAAATCCTTTATTATGAAGTTGAATTAGTTGATTTCACCAAGAAGTTTGATAACAGTGAACTTTTCTCTCGATGTCCTTGA

Protein sequence

>Msa0141550

MTLSLQNEDSEFVLKQIGNEGLTKQILRKGVTWQTPFSGDQVEVHFRGQVENGLPLESSYDKGSSFHFKLGQGEVIKGWDEGVATMKKGERAIFKIPPSLAYGEKGSPPLIPPNATLIFEIEMLCWSSIRDLTGDGGIMKKTIREGEGWATPKELDEVLVKYEARLENGMLIKSDKGVEFNVSDGHNFADGVISQNSNRTIVLDDLPDSNLINIKLELVSWKIVTDITGDKKILKKINKAGEGFDRPNEGSHVKVIYLCKGEDGTIIERKGSKEEPFEFTTQEEQVHDGLERAVLTMKKAEQALVTINAENLCDHNNLQGNKANNKILYYEVELVDFTKKFDNSELFSRCP*