Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0763280 | A0A396HN25 | 76.271 | 236 | 52 | 2 | 8 | 242 | 73 | 305 | 2.46e-123 | 363 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0004350 | Msa0763280 | 0.817175 | 3.778056e-52 | -8.615850e-47 |
| Msa0015370 | Msa0763280 | 0.826458 | 2.683078e-54 | -8.615850e-47 |
| Msa0042390 | Msa0763280 | 0.820800 | 5.662988e-53 | -8.615850e-47 |
| Msa0067580 | Msa0763280 | 0.810665 | 1.029683e-50 | -8.615850e-47 |
| Msa0079690 | Msa0763280 | 0.805324 | 1.410329e-49 | -8.615850e-47 |
| Msa0101070 | Msa0763280 | 0.810749 | 9.874081e-51 | -8.615850e-47 |
| Msa0101650 | Msa0763280 | 0.814325 | 1.632166e-51 | -8.615850e-47 |
| Msa0102800 | Msa0763280 | 0.800771 | 1.232870e-48 | -8.615850e-47 |
| Msa0617370 | Msa0763280 | 0.833939 | 3.997798e-56 | -8.615850e-47 |
| Msa0635130 | Msa0763280 | 0.850447 | 1.688320e-60 | -8.615850e-47 |
| Msa0675790 | Msa0763280 | 0.803133 | 4.032076e-49 | -8.615850e-47 |
| Msa0678240 | Msa0763280 | 0.833803 | 4.323198e-56 | -8.615850e-47 |
| Msa0683650 | Msa0763280 | 0.820868 | 5.462844e-53 | -8.615850e-47 |
| Msa0690350 | Msa0763280 | 0.809806 | 1.577343e-50 | -8.615850e-47 |
| Msa0692000 | Msa0763280 | 0.838482 | 2.801836e-57 | -8.615850e-47 |
| Msa0692910 | Msa0763280 | 0.810079 | 1.377886e-50 | -8.615850e-47 |
| Msa0719340 | Msa0763280 | 0.806287 | 8.852223e-50 | -8.615850e-47 |
| Msa0730180 | Msa0763280 | 0.802321 | 5.931414e-49 | -8.615850e-47 |
| Msa0749900 | Msa0763280 | 0.812639 | 3.830722e-51 | -8.615850e-47 |
| Msa0752540 | Msa0763280 | 0.803250 | 3.812753e-49 | -8.615850e-47 |
| Msa0752580 | Msa0763280 | 0.847980 | 8.201540e-60 | -8.615850e-47 |
| Msa0754500 | Msa0763280 | 0.840038 | 1.106073e-57 | -8.615850e-47 |
| Msa0756410 | Msa0763280 | 0.830283 | 3.205167e-55 | -8.615850e-47 |
| Msa0756480 | Msa0763280 | 0.843959 | 1.016695e-58 | -8.615850e-47 |
| Msa0760890 | Msa0763280 | 0.801536 | 8.596647e-49 | -8.615850e-47 |
| Msa0763270 | Msa0763280 | 0.940215 | 3.413640e-100 | -8.615850e-47 |
| Msa0763280 | Msa0770430 | 0.805020 | 1.633006e-49 | -8.615850e-47 |
| Msa0763280 | Msa0770890 | 0.815286 | 9.991992e-52 | -8.615850e-47 |
| Msa0763280 | Msa0772150 | 0.812815 | 3.505799e-51 | -8.615850e-47 |
| Msa0763280 | Msa0782090 | 0.807102 | 5.955881e-50 | -8.615850e-47 |
| Msa0763280 | Msa0800130 | 0.821388 | 4.146768e-53 | -8.615850e-47 |
| Msa0763280 | Msa0801390 | 0.803975 | 2.696497e-49 | -8.615850e-47 |
| Msa0763280 | Msa0819740 | 0.818589 | 1.811517e-52 | -8.615850e-47 |
| Msa0763280 | Msa0829430 | 0.801539 | 8.586601e-49 | -8.615850e-47 |
| Msa0763280 | Msa0830120 | 0.826232 | 3.036814e-54 | -8.615850e-47 |
| Msa0763280 | Msa0830450 | 0.825219 | 5.280779e-54 | -8.615850e-47 |
| Msa0763280 | Msa0830900 | 0.847997 | 8.116494e-60 | -8.615850e-47 |
| Msa0763280 | Msa0835510 | 0.849639 | 2.841778e-60 | -8.615850e-47 |
| Msa0763280 | Msa0840630 | 0.803903 | 2.792019e-49 | -8.615850e-47 |
| Msa0763280 | Msa0862020 | 0.801357 | 9.356304e-49 | -8.615850e-47 |
| Msa0763280 | Msa0873830 | 0.836370 | 9.736046e-57 | -8.615850e-47 |
| Msa0763280 | Msa0883390 | 0.816905 | 4.345404e-52 | -8.615850e-47 |
| Msa0763280 | Msa0887070 | 0.812610 | 3.888456e-51 | -8.615850e-47 |
| Msa0763280 | Msa0912160 | 0.802160 | 6.399606e-49 | -8.615850e-47 |
| Msa0763280 | Msa0929400 | 0.814737 | 1.322592e-51 | -8.615850e-47 |
| Msa0763280 | Msa0937940 | 0.819932 | 8.958347e-53 | -8.615850e-47 |
| Msa0763280 | Msa0950410 | 0.803407 | 3.537085e-49 | -8.615850e-47 |
| Msa0763280 | Msa0951720 | 0.826608 | 2.471697e-54 | -8.615850e-47 |
| Msa0763280 | Msa0975080 | 0.809039 | 2.304236e-50 | -8.615850e-47 |
| Msa0763280 | Msa0981730 | 0.814594 | 1.423029e-51 | -8.615850e-47 |
| Msa0763280 | Msa0981740 | 0.815135 | 1.079726e-51 | -8.615850e-47 |
| Msa0763280 | Msa0985430 | 0.814911 | 1.210624e-51 | -8.615850e-47 |
| Msa0763280 | Msa1000470 | 0.817955 | 2.521171e-52 | -8.615850e-47 |
| Msa0763280 | Msa1009150 | 0.805793 | 1.124603e-49 | -8.615850e-47 |
| Msa0763280 | Msa1009170 | 0.835191 | 1.937424e-56 | -8.615850e-47 |
| Msa0763280 | Msa1009200 | 0.821962 | 3.053765e-53 | -8.615850e-47 |
| Msa0763280 | Msa1009220 | 0.800825 | 1.201930e-48 | -8.615850e-47 |
| Msa0763280 | Msa1026610 | 0.811066 | 8.429314e-51 | -8.615850e-47 |
| Msa0763280 | Msa1038820 | 0.800971 | 1.122095e-48 | -8.615850e-47 |
| Msa0763280 | Msa1044040 | 0.814344 | 1.616145e-51 | -8.615850e-47 |
| Msa0763280 | Msa1055360 | 0.810961 | 8.883929e-51 | -8.615850e-47 |
| Msa0763280 | Msa1064210 | 0.803313 | 3.700917e-49 | -8.615850e-47 |
| Msa0763280 | Msa1072350 | 0.803004 | 4.287604e-49 | -8.615850e-47 |
| Msa0763280 | Msa1073500 | 0.813917 | 2.007824e-51 | -8.615850e-47 |
| Msa0763280 | Msa1080430 | 0.804628 | 1.971431e-49 | -8.615850e-47 |
| Msa0763280 | Msa1080460 | 0.819275 | 1.264852e-52 | -8.615850e-47 |
| Msa0763280 | Msa1080470 | 0.824107 | 9.652308e-54 | -8.615850e-47 |
| Msa0763280 | Msa1081600 | 0.802730 | 4.883054e-49 | -8.615850e-47 |
| Msa0763280 | Msa1081700 | 0.839275 | 1.746484e-57 | -8.615850e-47 |
| Msa0763280 | Msa1093390 | 0.809250 | 2.076008e-50 | -8.615850e-47 |
| Msa0763280 | Msa1098350 | 0.829227 | 5.792160e-55 | -8.615850e-47 |
| Msa0763280 | Msa1107970 | 0.817831 | 2.688303e-52 | -8.615850e-47 |
| Msa0763280 | Msa1122510 | 0.827365 | 1.629081e-54 | -8.615850e-47 |
| Msa0763280 | Msa1126170 | 0.810631 | 1.046891e-50 | -8.615850e-47 |
| Msa0763280 | Msa1130650 | 0.802616 | 5.156748e-49 | -8.615850e-47 |
| Msa0763280 | Msa1135660 | 0.834970 | 2.202603e-56 | -8.615850e-47 |
| Msa0763280 | Msa1138450 | 0.810243 | 1.269675e-50 | -8.615850e-47 |
| Msa0763280 | Msa1138480 | 0.847970 | 8.251928e-60 | -8.615850e-47 |
| Msa0763280 | Msa1138490 | 0.818106 | 2.331041e-52 | -8.615850e-47 |
| Msa0763280 | Msa1151960 | 0.828648 | 7.999765e-55 | -8.615850e-47 |
| Msa0763280 | Msa1166370 | 0.804989 | 1.657827e-49 | -8.615850e-47 |
| Msa0763280 | Msa1167000 | 0.820964 | 5.193299e-53 | -8.615850e-47 |
| Msa0763280 | Msa1182780 | 0.812943 | 3.286912e-51 | -8.615850e-47 |
| Msa0763280 | Msa1184580 | 0.806560 | 7.750814e-50 | -8.615850e-47 |
| Msa0763280 | Msa1186210 | 0.809947 | 1.470762e-50 | -8.615850e-47 |
| Msa0763280 | Msa1208250 | 0.823627 | 1.251144e-53 | -8.615850e-47 |
| Msa0763280 | Msa1214900 | 0.816544 | 5.235204e-52 | -8.615850e-47 |
| Msa0763280 | Msa1222580 | 0.809856 | 1.538346e-50 | -8.615850e-47 |
| Msa0763280 | Msa1226600 | 0.812975 | 3.233772e-51 | -8.615850e-47 |
| Msa0763280 | Msa1232330 | 0.804143 | 2.488508e-49 | -8.615850e-47 |
| Msa0763280 | Msa1238480 | 0.835810 | 1.351350e-56 | -8.615850e-47 |
| Msa0763280 | Msa1268370 | 0.818149 | 2.279033e-52 | -8.615850e-47 |
| Msa0763280 | Msa1275340 | 0.800709 | 1.268928e-48 | -8.615850e-47 |
| Msa0763280 | Msa1279310 | 0.802739 | 4.863573e-49 | -8.615850e-47 |
| Msa0763280 | Msa1279860 | 0.842038 | 3.300726e-58 | -8.615850e-47 |
| Msa0763280 | Msa1279870 | 0.820779 | 5.727739e-53 | -8.615850e-47 |
| Msa0763280 | Msa1280020 | 0.813307 | 2.735447e-51 | -8.615850e-47 |
| Msa0763280 | Msa1281720 | 0.800927 | 1.145556e-48 | -8.615850e-47 |
| Msa0763280 | Msa1287160 | 0.830220 | 3.320416e-55 | -8.615850e-47 |
| Msa0763280 | Msa1287340 | 0.831999 | 1.214143e-55 | -8.615850e-47 |
| Msa0763280 | Msa1292620 | 0.813836 | 2.091613e-51 | -8.615850e-47 |
| Msa0763280 | Msa1297720 | 0.803500 | 3.383886e-49 | -8.615850e-47 |
| Msa0763280 | Msa1311550 | 0.800922 | 1.148254e-48 | -8.615850e-47 |
| Msa0763280 | Msa1326000 | 0.819057 | 1.418082e-52 | -8.615850e-47 |
| Msa0763280 | Msa1329990 | 0.802985 | 4.326538e-49 | -8.615850e-47 |
| Msa0763280 | Msa1343770 | 0.808063 | 3.723642e-50 | -8.615850e-47 |
| Msa0763280 | Msa1344430 | 0.816441 | 5.522631e-52 | -8.615850e-47 |
| Msa0763280 | Msa1355260 | 0.812300 | 4.544688e-51 | -8.615850e-47 |
| Msa0763280 | Msa1357380 | 0.827494 | 1.516615e-54 | -8.615850e-47 |
| Msa0763280 | Msa1365120 | 0.818566 | 1.833409e-52 | -8.615850e-47 |
| Msa0763280 | Msa1366700 | 0.815095 | 1.101862e-51 | -8.615850e-47 |
| Msa0763280 | Msa1386520 | 0.800887 | 1.167218e-48 | -8.615850e-47 |
| Msa0763280 | Msa1412520 | 0.815663 | 8.235814e-52 | -8.615850e-47 |
| Msa0763280 | Msa1418200 | 0.803152 | 3.995255e-49 | -8.615850e-47 |
| Msa0763280 | Msa1426750 | 0.806998 | 6.263742e-50 | -8.615850e-47 |
| Msa0763280 | Msa1430760 | 0.804530 | 2.066355e-49 | -8.615850e-47 |
| Msa0763280 | Msa1435040 | 0.806818 | 6.839684e-50 | -8.615850e-47 |
| Msa0763280 | Msa1437650 | 0.813592 | 2.367631e-51 | -8.615850e-47 |
| Msa0763280 | Msa1450420 | 0.801088 | 1.061634e-48 | -8.615850e-47 |
| Msa0763280 | Msa1460510 | 0.827159 | 1.824495e-54 | -8.615850e-47 |
| Msa0763280 | Msa1463210 | 0.843116 | 1.707550e-58 | -8.615850e-47 |
| Msa0141550 | Msa0763280 | 0.818345 | 2.057486e-52 | -8.615850e-47 |
| Msa0153440 | Msa0763280 | 0.819255 | 1.278503e-52 | -8.615850e-47 |
| Msa0180290 | Msa0763280 | 0.800592 | 1.340488e-48 | -8.615850e-47 |
| Msa0181090 | Msa0763280 | 0.817225 | 3.682010e-52 | -8.615850e-47 |
| Msa0206940 | Msa0763280 | 0.814492 | 1.499029e-51 | -8.615850e-47 |
| Msa0213080 | Msa0763280 | 0.841837 | 3.729883e-58 | -8.615850e-47 |
| Msa0217470 | Msa0763280 | 0.816327 | 5.854456e-52 | -8.615850e-47 |
| Msa0218860 | Msa0763280 | 0.804216 | 2.403118e-49 | -8.615850e-47 |
| Msa0232860 | Msa0763280 | 0.835009 | 2.152722e-56 | -8.615850e-47 |
| Msa0235550 | Msa0763280 | 0.826246 | 3.013139e-54 | -8.615850e-47 |
| Msa0371610 | Msa0763280 | 0.813503 | 2.477020e-51 | -8.615850e-47 |
| Msa0389050 | Msa0763280 | 0.827308 | 1.680977e-54 | -8.615850e-47 |
| Msa0404870 | Msa0763280 | 0.824223 | 9.067509e-54 | -8.615850e-47 |
| Msa0409820 | Msa0763280 | 0.850078 | 2.141669e-60 | -8.615850e-47 |
| Msa0410960 | Msa0763280 | 0.833615 | 4.816211e-56 | -8.615850e-47 |
| Msa0411560 | Msa0763280 | 0.804501 | 2.095496e-49 | -8.615850e-47 |
| Msa0413740 | Msa0763280 | 0.831693 | 1.444234e-55 | -8.615850e-47 |
| Msa0414070 | Msa0763280 | 0.820405 | 6.979536e-53 | -8.615850e-47 |
| Msa0423600 | Msa0763280 | 0.803962 | 2.713910e-49 | -8.615850e-47 |
| Msa0439700 | Msa0763280 | 0.809296 | 2.029720e-50 | -8.615850e-47 |
| Msa0444630 | Msa0763280 | 0.801516 | 8.676669e-49 | -8.615850e-47 |
| Msa0452010 | Msa0763280 | 0.829275 | 5.639165e-55 | -8.615850e-47 |
| Msa0455260 | Msa0763280 | 0.869653 | 2.635438e-66 | -8.615850e-47 |
| Msa0458110 | Msa0763280 | 0.802076 | 6.659192e-49 | -8.615850e-47 |
| Msa0458790 | Msa0763280 | 0.827157 | 1.826895e-54 | -8.615850e-47 |
| Msa0482580 | Msa0763280 | 0.806736 | 7.116950e-50 | -8.615850e-47 |
| Msa0254190 | Msa0763280 | 0.817073 | 3.984893e-52 | -8.615850e-47 |
| Msa0260970 | Msa0763280 | 0.834833 | 2.383874e-56 | -8.615850e-47 |
| Msa0274520 | Msa0763280 | 0.822347 | 2.487409e-53 | -8.615850e-47 |
| Msa0278720 | Msa0763280 | 0.801489 | 8.791254e-49 | -8.615850e-47 |
| Msa0296610 | Msa0763280 | 0.835746 | 1.402545e-56 | -8.615850e-47 |
| Msa0311330 | Msa0763280 | 0.816134 | 6.466438e-52 | -8.615850e-47 |
| Msa0350020 | Msa0763280 | 0.810854 | 9.371761e-51 | -8.615850e-47 |
| Msa0358710 | Msa0763280 | 0.818881 | 1.555109e-52 | -8.615850e-47 |
| Msa0363440 | Msa0763280 | 0.869434 | 3.106480e-66 | -8.615850e-47 |
| Msa0486530 | Msa0763280 | 0.801836 | 7.459397e-49 | -8.615850e-47 |
| Msa0501470 | Msa0763280 | 0.803848 | 2.865559e-49 | -8.615850e-47 |
| Msa0502500 | Msa0763280 | 0.801699 | 7.959720e-49 | -8.615850e-47 |
| Msa0503620 | Msa0763280 | 0.829372 | 5.342278e-55 | -8.615850e-47 |
| Msa0505390 | Msa0763280 | 0.830504 | 2.829317e-55 | -8.615850e-47 |
| Msa0524050 | Msa0763280 | 0.807593 | 4.686214e-50 | -8.615850e-47 |
| Msa0530930 | Msa0763280 | 0.822504 | 2.286931e-53 | -8.615850e-47 |
| Msa0539320 | Msa0763280 | 0.851370 | 9.275502e-61 | -8.615850e-47 |
| Msa0543310 | Msa0763280 | 0.824254 | 8.919072e-54 | -8.615850e-47 |
| Msa0549740 | Msa0763280 | 0.809559 | 1.782515e-50 | -8.615850e-47 |
| Msa0555980 | Msa0763280 | 0.830682 | 2.559919e-55 | -8.615850e-47 |
| Msa0568120 | Msa0763280 | 0.810163 | 1.321652e-50 | -8.615850e-47 |
| Msa0589290 | Msa0763280 | 0.803472 | 3.430559e-49 | -8.615850e-47 |
| Msa0599250 | Msa0763280 | 0.820050 | 8.417618e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0763280 | MtrunA17_Chr5g0410411 | 76.271 | 236 | 52 | 2 | 8 | 242 | 73 | 305 | 4.73e-127 | 363 |
| Msa0763280 | MtrunA17_Chr5g0410471 | 60.377 | 212 | 78 | 3 | 8 | 217 | 106 | 313 | 5.02e-80 | 243 |
| Msa0763280 | MtrunA17_Chr5g0410381 | 70.625 | 160 | 47 | 0 | 83 | 242 | 6 | 165 | 6.59e-77 | 232 |
| Msa0763280 | MtrunA17_Chr5g0410581 | 52.521 | 238 | 106 | 5 | 8 | 242 | 77 | 310 | 1.03e-69 | 228 |
| Msa0763280 | MtrunA17_Chr5g0410561 | 54.167 | 216 | 93 | 4 | 29 | 242 | 2 | 213 | 6.55e-69 | 211 |
| Msa0763280 | MtrunA17_Chr5g0410341 | 47.303 | 241 | 105 | 8 | 18 | 242 | 51 | 285 | 5.07e-50 | 174 |
| Msa0763280 | MtrunA17_Chr5g0410171 | 39.526 | 253 | 134 | 5 | 6 | 242 | 42 | 291 | 6.32e-45 | 159 |
| Msa0763280 | MtrunA17_Chr5g0410211 | 54.015 | 137 | 60 | 2 | 109 | 242 | 5 | 141 | 1.43e-40 | 138 |
| Msa0763280 | MtrunA17_Chr5g0410291 | 52.206 | 136 | 63 | 1 | 109 | 242 | 5 | 140 | 8.58e-40 | 136 |
| Msa0763280 | MtrunA17_Chr6g0456151 | 33.884 | 242 | 137 | 9 | 11 | 242 | 58 | 286 | 5.38e-26 | 102 |
| Msa0763280 | MtrunA17_Chr6g0456101 | 31.855 | 248 | 142 | 7 | 11 | 242 | 58 | 294 | 4.28e-24 | 100 |
| Msa0763280 | MtrunA17_Chr6g0457101 | 32.759 | 232 | 125 | 9 | 26 | 242 | 53 | 268 | 5.69e-21 | 91.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 46 sgRNAs with CRISPR-Local
Find 118 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTTGCCATATCAATGTTTC+CGG | 0.257336 | 5_2:+22340775 | None:intergenic |
| TGCATGGTAGAGAGGGAAAA+TGG | 0.264948 | 5_2:-22340752 | Msa0763280:CDS |
| TTATTGAAATGCAGCTGATT+TGG | 0.297060 | 5_2:-22341044 | Msa0763280:intron |
| TTAGCAGCAGCTATAAGAAT+TGG | 0.340840 | 5_2:+22340683 | None:intergenic |
| ATCATGTGGAAAACGTATTC+AGG | 0.347448 | 5_2:-22341401 | Msa0763280:CDS |
| AAGTTGAAAGAGAAGTTTCT+TGG | 0.355395 | 5_2:-22341462 | Msa0763280:CDS |
| ATACACGGCAGAACTCAAAA+AGG | 0.356094 | 5_2:-22341325 | Msa0763280:CDS |
| GTCGAGAGAGGTGTCTATAT+TGG | 0.381319 | 5_2:-22340980 | Msa0763280:CDS |
| TTGTACCGGAAACATTGATA+TGG | 0.420604 | 5_2:-22340780 | Msa0763280:CDS |
| TGTATCACAGCTGAAATATT+CGG | 0.431976 | 5_2:-22340563 | None:intergenic |
| GCTCTTGTTGCTCGTTGTAC+CGG | 0.441811 | 5_2:-22340794 | Msa0763280:CDS |
| CTTCACGTTGCAGTAGTTGC+TGG | 0.451839 | 5_2:-22340902 | Msa0763280:CDS |
| TAGCAGCAGCTATAAGAATT+GGG | 0.454519 | 5_2:+22340684 | None:intergenic |
| CTCCTGAATATATGCTTATG+TGG | 0.463666 | 5_2:+22341004 | None:intergenic |
| AACCACATAAGCATATATTC+AGG | 0.470862 | 5_2:-22341006 | Msa0763280:CDS |
| TTTCAACTTCAGAAACACTT+TGG | 0.479499 | 5_2:+22341476 | None:intergenic |
| AGGGAAACTGTATCCATTGA+AGG | 0.481361 | 5_2:-22341305 | Msa0763280:CDS |
| ACGTACTTACTGTCCTTCAA+TGG | 0.486233 | 5_2:+22341292 | None:intergenic |
| ATTGGATCCGTCGAACAGTC+TGG | 0.491750 | 5_2:+22340616 | None:intergenic |
| TCAATCTTAATTACATGCAA+TGG | 0.506149 | 5_2:-22341531 | None:intergenic |
| ATATATATAAAATCCGCTTC+TGG | 0.516537 | 5_2:-22340935 | Msa0763280:CDS |
| TGTGGAAAATGTGGAAATGT+TGG | 0.528036 | 5_2:-22340876 | Msa0763280:CDS |
| TGCTGGAAATGTGGAAAATG+TGG | 0.529311 | 5_2:-22340885 | Msa0763280:CDS |
| GCATGGTAGAGAGGGAAAAT+GGG | 0.531322 | 5_2:-22340751 | Msa0763280:CDS |
| GGGAAAATGGGTCTCATGAA+AGG | 0.537848 | 5_2:-22340739 | Msa0763280:CDS |
| TCCGTCGAACAGTCTGGTGG+GGG | 0.543506 | 5_2:+22340622 | None:intergenic |
| ATCCGTCGAACAGTCTGGTG+GGG | 0.543713 | 5_2:+22340621 | None:intergenic |
| GGCAAAGTGCATGGTAGAGA+GGG | 0.545786 | 5_2:-22340759 | Msa0763280:CDS |
| GATCCGTCGAACAGTCTGGT+GGG | 0.557916 | 5_2:+22340620 | None:intergenic |
| CATTGATATGGCAAAGTGCA+TGG | 0.563736 | 5_2:-22340768 | Msa0763280:CDS |
| GCTGATTTGGACGATAGCCT+TGG | 0.565463 | 5_2:-22341031 | Msa0763280:CDS |
| TTAAAACAGCTAGCGAAGCA+TGG | 0.566778 | 5_2:-22341363 | Msa0763280:CDS |
| CATATCATTCAAATATCATG+TGG | 0.575728 | 5_2:-22341415 | Msa0763280:CDS |
| AAGTAGCGTCCTACCAGAAG+CGG | 0.593606 | 5_2:+22340922 | None:intergenic |
| ATATAAAATCCGCTTCTGGT+AGG | 0.601973 | 5_2:-22340931 | Msa0763280:CDS |
| TGCAGTAGTTGCTGGAAATG+TGG | 0.602403 | 5_2:-22340894 | Msa0763280:CDS |
| TGGCAAAGTGCATGGTAGAG+AGG | 0.605185 | 5_2:-22340760 | Msa0763280:CDS |
| TAGCGAAGCATGGAATCACT+TGG | 0.606123 | 5_2:-22341353 | Msa0763280:CDS |
| CACATAAGCATATATTCAGG+AGG | 0.606421 | 5_2:-22341003 | Msa0763280:CDS |
| CAATGGATAAAATATTTGAA+AGG | 0.606467 | 5_2:-22341514 | Msa0763280:CDS |
| GGATCCGTCGAACAGTCTGG+TGG | 0.615081 | 5_2:+22340619 | None:intergenic |
| AATCACTTGGCTAACATACA+CGG | 0.615201 | 5_2:-22341340 | Msa0763280:CDS |
| TATGCTTATGTGGTTCGCCA+AGG | 0.616261 | 5_2:+22341014 | None:intergenic |
| GTAAACATGCAAGACAATCA+CGG | 0.656052 | 5_2:-22340830 | Msa0763280:CDS |
| ATATTCAGGAGGGTCGAGAG+AGG | 0.670243 | 5_2:-22340992 | Msa0763280:CDS |
| ACATAAGCATATATTCAGGA+GGG | 0.674282 | 5_2:-22341002 | Msa0763280:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAATAAAAAAAATAACTCT+AGG | + | chr5_2:22340922-22340941 | None:intergenic | 10.0% |
| !! | AAAATAAAAAAAATAACTCT+AGG | + | chr5_2:22340922-22340941 | None:intergenic | 10.0% |
| !! | TAAATAATTCAATTTACTGA+AGG | - | chr5_2:22340893-22340912 | Msa0763280:CDS | 15.0% |
| !! | CAATAATATAAACTAAATGA+GGG | + | chr5_2:22341024-22341043 | None:intergenic | 15.0% |
| !! | TCAATAATATAAACTAAATG+AGG | + | chr5_2:22341025-22341044 | None:intergenic | 15.0% |
| !! | TAAATAATTCAATTTACTGA+AGG | - | chr5_2:22340893-22340912 | Msa0763280:CDS | 15.0% |
| !! | CAATAATATAAACTAAATGA+GGG | + | chr5_2:22341024-22341043 | None:intergenic | 15.0% |
| !! | TCAATAATATAAACTAAATG+AGG | + | chr5_2:22341025-22341044 | None:intergenic | 15.0% |
| !! | CAATGGATAAAATATTTGAA+AGG | - | chr5_2:22340568-22340587 | Msa0763280:CDS | 20.0% |
| !!! | GTACGTTTTTAAATTGTAAT+TGG | - | chr5_2:22340807-22340826 | Msa0763280:CDS | 20.0% |
| !! | CAATGGATAAAATATTTGAA+AGG | - | chr5_2:22340568-22340587 | Msa0763280:CDS | 20.0% |
| !!! | GTACGTTTTTAAATTGTAAT+TGG | - | chr5_2:22340807-22340826 | Msa0763280:CDS | 20.0% |
| ! | CATATCATTCAAATATCATG+TGG | - | chr5_2:22340667-22340686 | Msa0763280:CDS | 25.0% |
| ! | AATATAAACTAAATGAGGGT+TGG | + | chr5_2:22341020-22341039 | None:intergenic | 25.0% |
| ! | ATATATATAAAATCCGCTTC+TGG | - | chr5_2:22341147-22341166 | Msa0763280:intron | 25.0% |
| ! | CATATCATTCAAATATCATG+TGG | - | chr5_2:22340667-22340686 | Msa0763280:CDS | 25.0% |
| ! | AATATAAACTAAATGAGGGT+TGG | + | chr5_2:22341020-22341039 | None:intergenic | 25.0% |
| ! | ATATATATAAAATCCGCTTC+TGG | - | chr5_2:22341147-22341166 | Msa0763280:intron | 25.0% |
| TTTCAACTTCAGAAACACTT+TGG | + | chr5_2:22340609-22340628 | None:intergenic | 30.0% | |
| AAGTTGAAAGAGAAGTTTCT+TGG | - | chr5_2:22340620-22340639 | Msa0763280:CDS | 30.0% | |
| TTATTGAAATGCAGCTGATT+TGG | - | chr5_2:22341038-22341057 | Msa0763280:intron | 30.0% | |
| AACCACATAAGCATATATTC+AGG | - | chr5_2:22341076-22341095 | Msa0763280:intron | 30.0% | |
| ACATAAGCATATATTCAGGA+GGG | - | chr5_2:22341080-22341099 | Msa0763280:intron | 30.0% | |
| ! | TGGAAATGTTGGTGAAAAAT+GGG | - | chr5_2:22341217-22341236 | Msa0763280:intron | 30.0% |
| ! | CAATACTCGATTTTCTGAAT+TGG | + | chr5_2:22341487-22341506 | None:intergenic | 30.0% |
| TTTCAACTTCAGAAACACTT+TGG | + | chr5_2:22340609-22340628 | None:intergenic | 30.0% | |
| AAGTTGAAAGAGAAGTTTCT+TGG | - | chr5_2:22340620-22340639 | Msa0763280:CDS | 30.0% | |
| TTATTGAAATGCAGCTGATT+TGG | - | chr5_2:22341038-22341057 | Msa0763280:intron | 30.0% | |
| AACCACATAAGCATATATTC+AGG | - | chr5_2:22341076-22341095 | Msa0763280:intron | 30.0% | |
| ACATAAGCATATATTCAGGA+GGG | - | chr5_2:22341080-22341099 | Msa0763280:intron | 30.0% | |
| ! | TGGAAATGTTGGTGAAAAAT+GGG | - | chr5_2:22341217-22341236 | Msa0763280:intron | 30.0% |
| ! | CAATACTCGATTTTCTGAAT+TGG | + | chr5_2:22341487-22341506 | None:intergenic | 30.0% |
| ATCATGTGGAAAACGTATTC+AGG | - | chr5_2:22340681-22340700 | Msa0763280:CDS | 35.0% | |
| AATCACTTGGCTAACATACA+CGG | - | chr5_2:22340742-22340761 | Msa0763280:CDS | 35.0% | |
| !! | GGTTGGTTTAAGAATAAGGA+AGG | + | chr5_2:22341003-22341022 | None:intergenic | 35.0% |
| !! | TGAGGGTTGGTTTAAGAATA+AGG | + | chr5_2:22341007-22341026 | None:intergenic | 35.0% |
| CTCCTGAATATATGCTTATG+TGG | + | chr5_2:22341081-22341100 | None:intergenic | 35.0% | |
| CACATAAGCATATATTCAGG+AGG | - | chr5_2:22341079-22341098 | Msa0763280:intron | 35.0% | |
| ATATAAAATCCGCTTCTGGT+AGG | - | chr5_2:22341151-22341170 | Msa0763280:intron | 35.0% | |
| TGTGGAAAATGTGGAAATGT+TGG | - | chr5_2:22341206-22341225 | Msa0763280:intron | 35.0% | |
| ! | GTGGAAATGTTGGTGAAAAA+TGG | - | chr5_2:22341216-22341235 | Msa0763280:intron | 35.0% |
| GTAAACATGCAAGACAATCA+CGG | - | chr5_2:22341252-22341271 | Msa0763280:intron | 35.0% | |
| TTGTACCGGAAACATTGATA+TGG | - | chr5_2:22341302-22341321 | Msa0763280:CDS | 35.0% | |
| CTTTGCCATATCAATGTTTC+CGG | + | chr5_2:22341310-22341329 | None:intergenic | 35.0% | |
| TAGCAGCAGCTATAAGAATT+GGG | + | chr5_2:22341401-22341420 | None:intergenic | 35.0% | |
| TTAGCAGCAGCTATAAGAAT+TGG | + | chr5_2:22341402-22341421 | None:intergenic | 35.0% | |
| ATCATGTGGAAAACGTATTC+AGG | - | chr5_2:22340681-22340700 | Msa0763280:CDS | 35.0% | |
| AATCACTTGGCTAACATACA+CGG | - | chr5_2:22340742-22340761 | Msa0763280:CDS | 35.0% | |
| !! | GGTTGGTTTAAGAATAAGGA+AGG | + | chr5_2:22341003-22341022 | None:intergenic | 35.0% |
| !! | TGAGGGTTGGTTTAAGAATA+AGG | + | chr5_2:22341007-22341026 | None:intergenic | 35.0% |
| CTCCTGAATATATGCTTATG+TGG | + | chr5_2:22341081-22341100 | None:intergenic | 35.0% | |
| CACATAAGCATATATTCAGG+AGG | - | chr5_2:22341079-22341098 | Msa0763280:intron | 35.0% | |
| ATATAAAATCCGCTTCTGGT+AGG | - | chr5_2:22341151-22341170 | Msa0763280:intron | 35.0% | |
| TGTGGAAAATGTGGAAATGT+TGG | - | chr5_2:22341206-22341225 | Msa0763280:intron | 35.0% | |
| ! | GTGGAAATGTTGGTGAAAAA+TGG | - | chr5_2:22341216-22341235 | Msa0763280:intron | 35.0% |
| GTAAACATGCAAGACAATCA+CGG | - | chr5_2:22341252-22341271 | Msa0763280:intron | 35.0% | |
| TTGTACCGGAAACATTGATA+TGG | - | chr5_2:22341302-22341321 | Msa0763280:CDS | 35.0% | |
| CTTTGCCATATCAATGTTTC+CGG | + | chr5_2:22341310-22341329 | None:intergenic | 35.0% | |
| TAGCAGCAGCTATAAGAATT+GGG | + | chr5_2:22341401-22341420 | None:intergenic | 35.0% | |
| TTAGCAGCAGCTATAAGAAT+TGG | + | chr5_2:22341402-22341421 | None:intergenic | 35.0% | |
| TTAAAACAGCTAGCGAAGCA+TGG | - | chr5_2:22340719-22340738 | Msa0763280:CDS | 40.0% | |
| ATACACGGCAGAACTCAAAA+AGG | - | chr5_2:22340757-22340776 | Msa0763280:CDS | 40.0% | |
| TACACGGCAGAACTCAAAAA+GGG | - | chr5_2:22340758-22340777 | Msa0763280:CDS | 40.0% | |
| AGGGAAACTGTATCCATTGA+AGG | - | chr5_2:22340777-22340796 | Msa0763280:CDS | 40.0% | |
| ACGTACTTACTGTCCTTCAA+TGG | + | chr5_2:22340793-22340812 | None:intergenic | 40.0% | |
| TGCTGGAAATGTGGAAAATG+TGG | - | chr5_2:22341197-22341216 | Msa0763280:intron | 40.0% | |
| CATTGATATGGCAAAGTGCA+TGG | - | chr5_2:22341314-22341333 | Msa0763280:CDS | 40.0% | |
| TTAAAACAGCTAGCGAAGCA+TGG | - | chr5_2:22340719-22340738 | Msa0763280:CDS | 40.0% | |
| ATACACGGCAGAACTCAAAA+AGG | - | chr5_2:22340757-22340776 | Msa0763280:CDS | 40.0% | |
| TACACGGCAGAACTCAAAAA+GGG | - | chr5_2:22340758-22340777 | Msa0763280:CDS | 40.0% | |
| AGGGAAACTGTATCCATTGA+AGG | - | chr5_2:22340777-22340796 | Msa0763280:CDS | 40.0% | |
| ACGTACTTACTGTCCTTCAA+TGG | + | chr5_2:22340793-22340812 | None:intergenic | 40.0% | |
| TGCTGGAAATGTGGAAAATG+TGG | - | chr5_2:22341197-22341216 | Msa0763280:intron | 40.0% | |
| CATTGATATGGCAAAGTGCA+TGG | - | chr5_2:22341314-22341333 | Msa0763280:CDS | 40.0% | |
| TAGCGAAGCATGGAATCACT+TGG | - | chr5_2:22340729-22340748 | Msa0763280:CDS | 45.0% | |
| TATGCTTATGTGGTTCGCCA+AGG | + | chr5_2:22341071-22341090 | None:intergenic | 45.0% | |
| !! | GTCGAGAGAGGTGTCTATAT+TGG | - | chr5_2:22341102-22341121 | Msa0763280:intron | 45.0% |
| TGCAGTAGTTGCTGGAAATG+TGG | - | chr5_2:22341188-22341207 | Msa0763280:intron | 45.0% | |
| TGCATGGTAGAGAGGGAAAA+TGG | - | chr5_2:22341330-22341349 | Msa0763280:CDS | 45.0% | |
| GCATGGTAGAGAGGGAAAAT+GGG | - | chr5_2:22341331-22341350 | Msa0763280:CDS | 45.0% | |
| GGGAAAATGGGTCTCATGAA+AGG | - | chr5_2:22341343-22341362 | Msa0763280:CDS | 45.0% | |
| !!! | GGGGGTTTTGGAGTAAAGAT+AGG | + | chr5_2:22341445-22341464 | None:intergenic | 45.0% |
| TAGCGAAGCATGGAATCACT+TGG | - | chr5_2:22340729-22340748 | Msa0763280:CDS | 45.0% | |
| TATGCTTATGTGGTTCGCCA+AGG | + | chr5_2:22341071-22341090 | None:intergenic | 45.0% | |
| !! | GTCGAGAGAGGTGTCTATAT+TGG | - | chr5_2:22341102-22341121 | Msa0763280:intron | 45.0% |
| TGCAGTAGTTGCTGGAAATG+TGG | - | chr5_2:22341188-22341207 | Msa0763280:intron | 45.0% | |
| TGCATGGTAGAGAGGGAAAA+TGG | - | chr5_2:22341330-22341349 | Msa0763280:CDS | 45.0% | |
| GCATGGTAGAGAGGGAAAAT+GGG | - | chr5_2:22341331-22341350 | Msa0763280:CDS | 45.0% | |
| GGGAAAATGGGTCTCATGAA+AGG | - | chr5_2:22341343-22341362 | Msa0763280:CDS | 45.0% | |
| !!! | GGGGGTTTTGGAGTAAAGAT+AGG | + | chr5_2:22341445-22341464 | None:intergenic | 45.0% |
| !! | GCTGATTTGGACGATAGCCT+TGG | - | chr5_2:22341051-22341070 | Msa0763280:intron | 50.0% |
| ATATTCAGGAGGGTCGAGAG+AGG | - | chr5_2:22341090-22341109 | Msa0763280:intron | 50.0% | |
| AAGTAGCGTCCTACCAGAAG+CGG | + | chr5_2:22341163-22341182 | None:intergenic | 50.0% | |
| CTTCACGTTGCAGTAGTTGC+TGG | - | chr5_2:22341180-22341199 | Msa0763280:intron | 50.0% | |
| GCTCTTGTTGCTCGTTGTAC+CGG | - | chr5_2:22341288-22341307 | Msa0763280:intron | 50.0% | |
| TGGCAAAGTGCATGGTAGAG+AGG | - | chr5_2:22341322-22341341 | Msa0763280:CDS | 50.0% | |
| GGCAAAGTGCATGGTAGAGA+GGG | - | chr5_2:22341323-22341342 | Msa0763280:CDS | 50.0% | |
| ATTGGATCCGTCGAACAGTC+TGG | + | chr5_2:22341469-22341488 | None:intergenic | 50.0% | |
| !! | GCTGATTTGGACGATAGCCT+TGG | - | chr5_2:22341051-22341070 | Msa0763280:intron | 50.0% |
| ATATTCAGGAGGGTCGAGAG+AGG | - | chr5_2:22341090-22341109 | Msa0763280:intron | 50.0% | |
| AAGTAGCGTCCTACCAGAAG+CGG | + | chr5_2:22341163-22341182 | None:intergenic | 50.0% | |
| CTTCACGTTGCAGTAGTTGC+TGG | - | chr5_2:22341180-22341199 | Msa0763280:intron | 50.0% | |
| GCTCTTGTTGCTCGTTGTAC+CGG | - | chr5_2:22341288-22341307 | Msa0763280:intron | 50.0% | |
| TGGCAAAGTGCATGGTAGAG+AGG | - | chr5_2:22341322-22341341 | Msa0763280:CDS | 50.0% | |
| GGCAAAGTGCATGGTAGAGA+GGG | - | chr5_2:22341323-22341342 | Msa0763280:CDS | 50.0% | |
| ATTGGATCCGTCGAACAGTC+TGG | + | chr5_2:22341469-22341488 | None:intergenic | 50.0% | |
| ! | GAACAGTCTGGTGGGGGTTT+TGG | + | chr5_2:22341457-22341476 | None:intergenic | 55.0% |
| ATCCGTCGAACAGTCTGGTG+GGG | + | chr5_2:22341464-22341483 | None:intergenic | 55.0% | |
| GATCCGTCGAACAGTCTGGT+GGG | + | chr5_2:22341465-22341484 | None:intergenic | 55.0% | |
| ! | GAACAGTCTGGTGGGGGTTT+TGG | + | chr5_2:22341457-22341476 | None:intergenic | 55.0% |
| ATCCGTCGAACAGTCTGGTG+GGG | + | chr5_2:22341464-22341483 | None:intergenic | 55.0% | |
| GATCCGTCGAACAGTCTGGT+GGG | + | chr5_2:22341465-22341484 | None:intergenic | 55.0% | |
| ACCCCCACCAGACTGTTCGA+CGG | - | chr5_2:22341459-22341478 | Msa0763280:CDS | 60.0% | |
| TCCGTCGAACAGTCTGGTGG+GGG | + | chr5_2:22341463-22341482 | None:intergenic | 60.0% | |
| GGATCCGTCGAACAGTCTGG+TGG | + | chr5_2:22341466-22341485 | None:intergenic | 60.0% | |
| ACCCCCACCAGACTGTTCGA+CGG | - | chr5_2:22341459-22341478 | Msa0763280:CDS | 60.0% | |
| TCCGTCGAACAGTCTGGTGG+GGG | + | chr5_2:22341463-22341482 | None:intergenic | 60.0% | |
| GGATCCGTCGAACAGTCTGG+TGG | + | chr5_2:22341466-22341485 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_2 | gene | 22340565 | 22341539 | 22340565 | ID=Msa0763280;Name=Msa0763280 |
| chr5_2 | mRNA | 22340565 | 22341539 | 22340565 | ID=Msa0763280-mRNA-1;Parent=Msa0763280;Name=Msa0763280-mRNA-1;_AED=0.01;_eAED=0.01;_QI=0|0|0|1|1|0.5|2|0|242 |
| chr5_2 | exon | 22341302 | 22341539 | 22341302 | ID=Msa0763280-mRNA-1:exon:9182;Parent=Msa0763280-mRNA-1 |
| chr5_2 | exon | 22340565 | 22341052 | 22340565 | ID=Msa0763280-mRNA-1:exon:9181;Parent=Msa0763280-mRNA-1 |
| chr5_2 | CDS | 22341302 | 22341539 | 22341302 | ID=Msa0763280-mRNA-1:cds;Parent=Msa0763280-mRNA-1 |
| chr5_2 | CDS | 22340565 | 22341052 | 22340565 | ID=Msa0763280-mRNA-1:cds;Parent=Msa0763280-mRNA-1 |
| Gene Sequence |
| Protein sequence |
