Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1103500 | XP_013458054.1 | 98.485 | 66 | 1 | 0 | 2 | 67 | 876 | 941 | 6.35e-36 | 138 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1103500 | sp|Q9XGC9|MSH2_MAIZE | 50.000 | 66 | 33 | 0 | 2 | 67 | 876 | 941 | 7.60e-16 | 72.8 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1103500 | A0A072V1T7 | 98.485 | 66 | 1 | 0 | 2 | 67 | 876 | 941 | 3.03e-36 | 138 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0003700 | Msa1103500 | 0.812480 | 4.150012e-51 | -8.615850e-47 |
| Msa0017510 | Msa1103500 | 0.832965 | 6.995592e-56 | -8.615850e-47 |
| Msa0028640 | Msa1103500 | 0.803308 | 3.709349e-49 | -8.615850e-47 |
| Msa0068680 | Msa1103500 | 0.815603 | 8.494070e-52 | -8.615850e-47 |
| Msa0072370 | Msa1103500 | 0.808905 | 2.460804e-50 | -8.615850e-47 |
| Msa0076250 | Msa1103500 | 0.816437 | 5.533030e-52 | -8.615850e-47 |
| Msa0089630 | Msa1103500 | 0.835204 | 1.923044e-56 | -8.615850e-47 |
| Msa0094120 | Msa1103500 | 0.804604 | 1.995115e-49 | -8.615850e-47 |
| Msa0094140 | Msa1103500 | 0.805406 | 1.355819e-49 | -8.615850e-47 |
| Msa0110970 | Msa1103500 | 0.824642 | 7.227118e-54 | -8.615850e-47 |
| Msa0120400 | Msa1103500 | 0.802958 | 4.382754e-49 | -8.615850e-47 |
| Msa0627450 | Msa1103500 | 0.816735 | 4.744966e-52 | -8.615850e-47 |
| Msa0650020 | Msa1103500 | 0.803077 | 4.139701e-49 | -8.615850e-47 |
| Msa0657970 | Msa1103500 | 0.800389 | 1.474457e-48 | -8.615850e-47 |
| Msa0662500 | Msa1103500 | 0.808365 | 3.210509e-50 | -8.615850e-47 |
| Msa0663390 | Msa1103500 | 0.806485 | 8.041923e-50 | -8.615850e-47 |
| Msa0667050 | Msa1103500 | 0.808703 | 2.718593e-50 | -8.615850e-47 |
| Msa0677410 | Msa1103500 | 0.800981 | 1.116749e-48 | -8.615850e-47 |
| Msa0683510 | Msa1103500 | 0.808200 | 3.480782e-50 | -8.615850e-47 |
| Msa0709400 | Msa1103500 | 0.807737 | 4.367075e-50 | -8.615850e-47 |
| Msa0741240 | Msa1103500 | 0.819167 | 1.338878e-52 | -8.615850e-47 |
| Msa0767300 | Msa1103500 | 0.803228 | 3.853691e-49 | -8.615850e-47 |
| Msa0822870 | Msa1103500 | 0.801328 | 9.481845e-49 | -8.615850e-47 |
| Msa0828560 | Msa1103500 | 0.826896 | 2.109612e-54 | -8.615850e-47 |
| Msa0124280 | Msa1103500 | 0.804538 | 2.059002e-49 | -8.615850e-47 |
| Msa0140780 | Msa1103500 | 0.818300 | 2.106645e-52 | -8.615850e-47 |
| Msa0146260 | Msa1103500 | 0.810715 | 1.004436e-50 | -8.615850e-47 |
| Msa0157290 | Msa1103500 | 0.833279 | 5.843696e-56 | -8.615850e-47 |
| Msa0168500 | Msa1103500 | 0.810158 | 1.324456e-50 | -8.615850e-47 |
| Msa0168650 | Msa1103500 | 0.811990 | 5.308421e-51 | -8.615850e-47 |
| Msa0169860 | Msa1103500 | 0.802367 | 5.801896e-49 | -8.615850e-47 |
| Msa0189290 | Msa1103500 | 0.803814 | 2.913412e-49 | -8.615850e-47 |
| Msa0200260 | Msa1103500 | 0.842958 | 1.881809e-58 | -8.615850e-47 |
| Msa0221290 | Msa1103500 | 0.805886 | 1.075222e-49 | -8.615850e-47 |
| Msa0225740 | Msa1103500 | 0.803504 | 3.377735e-49 | -8.615850e-47 |
| Msa0231650 | Msa1103500 | 0.808678 | 2.751712e-50 | -8.615850e-47 |
| Msa0376350 | Msa1103500 | 0.800796 | 1.218439e-48 | -8.615850e-47 |
| Msa0392420 | Msa1103500 | 0.802581 | 5.243157e-49 | -8.615850e-47 |
| Msa0392490 | Msa1103500 | 0.806317 | 8.723861e-50 | -8.615850e-47 |
| Msa0403970 | Msa1103500 | 0.818219 | 2.196867e-52 | -8.615850e-47 |
| Msa0410650 | Msa1103500 | 0.814289 | 1.662093e-51 | -8.615850e-47 |
| Msa0417880 | Msa1103500 | 0.823885 | 1.088741e-53 | -8.615850e-47 |
| Msa0479170 | Msa1103500 | 0.826459 | 2.682187e-54 | -8.615850e-47 |
| Msa0481530 | Msa1103500 | 0.800342 | 1.507913e-48 | -8.615850e-47 |
| Msa1019430 | Msa1103500 | 0.814933 | 1.197225e-51 | -8.615850e-47 |
| Msa1020670 | Msa1103500 | 0.806473 | 8.088089e-50 | -8.615850e-47 |
| Msa1082500 | Msa1103500 | 0.805718 | 1.166215e-49 | -8.615850e-47 |
| Msa1085200 | Msa1103500 | 0.814346 | 1.614439e-51 | -8.615850e-47 |
| Msa1103500 | Msa1123380 | 0.809755 | 1.617770e-50 | -8.615850e-47 |
| Msa1103500 | Msa1124960 | 0.803693 | 3.086337e-49 | -8.615850e-47 |
| Msa1103500 | Msa1142020 | 0.814029 | 1.896855e-51 | -8.615850e-47 |
| Msa1103500 | Msa1172450 | 0.814346 | 1.614550e-51 | -8.615850e-47 |
| Msa1103500 | Msa1209460 | 0.830942 | 2.209633e-55 | -8.615850e-47 |
| Msa1103500 | Msa1242220 | 0.801878 | 7.314458e-49 | -8.615850e-47 |
| Msa1103500 | Msa1283860 | 0.808918 | 2.445562e-50 | -8.615850e-47 |
| Msa1103500 | Msa1300490 | 0.801854 | 7.399147e-49 | -8.615850e-47 |
| Msa1103500 | Msa1303250 | 0.800920 | 1.148949e-48 | -8.615850e-47 |
| Msa1103500 | Msa1328710 | 0.808233 | 3.424624e-50 | -8.615850e-47 |
| Msa1103500 | Msa1374040 | 0.809793 | 1.587156e-50 | -8.615850e-47 |
| Msa1103500 | Msa1374550 | 0.836008 | 1.203536e-56 | -8.615850e-47 |
| Msa1103500 | Msa1382540 | 0.813481 | 2.504982e-51 | -8.615850e-47 |
| Msa1103500 | Msa1438250 | 0.800386 | 1.476579e-48 | -8.615850e-47 |
| Msa1103500 | Msa1457910 | 0.813624 | 2.329231e-51 | -8.615850e-47 |
| Msa1103500 | Msa1460020 | 0.807568 | 4.743063e-50 | -8.615850e-47 |
| Msa1103500 | Msa1464810 | 0.831906 | 1.279975e-55 | -8.615850e-47 |
| Msa0243100 | Msa1103500 | 0.850795 | 1.347765e-60 | -8.615850e-47 |
| Msa0260610 | Msa1103500 | 0.808250 | 3.396524e-50 | -8.615850e-47 |
| Msa0260670 | Msa1103500 | 0.802499 | 5.449265e-49 | -8.615850e-47 |
| Msa0261340 | Msa1103500 | 0.800271 | 1.558795e-48 | -8.615850e-47 |
| Msa0284420 | Msa1103500 | 0.802526 | 5.379604e-49 | -8.615850e-47 |
| Msa0287650 | Msa1103500 | 0.828802 | 7.343251e-55 | -8.615850e-47 |
| Msa0292400 | Msa1103500 | 0.807775 | 4.287766e-50 | -8.615850e-47 |
| Msa0317340 | Msa1103500 | 0.800493 | 1.404257e-48 | -8.615850e-47 |
| Msa0357340 | Msa1103500 | 0.807224 | 5.611502e-50 | -8.615850e-47 |
| Msa0363070 | Msa1103500 | 0.802111 | 6.549601e-49 | -8.615850e-47 |
| Msa0487630 | Msa1103500 | 0.815750 | 7.879372e-52 | -8.615850e-47 |
| Msa0498060 | Msa1103500 | 0.812320 | 4.499355e-51 | -8.615850e-47 |
| Msa0507680 | Msa1103500 | 0.820125 | 8.090852e-53 | -8.615850e-47 |
| Msa0509610 | Msa1103500 | 0.810130 | 1.342892e-50 | -8.615850e-47 |
| Msa0602460 | Msa1103500 | 0.804880 | 1.746737e-49 | -8.615850e-47 |
| Msa0843220 | Msa1103500 | 0.812466 | 4.179346e-51 | -8.615850e-47 |
| Msa0861870 | Msa1103500 | 0.825085 | 5.682347e-54 | -8.615850e-47 |
| Msa0880140 | Msa1103500 | 0.830549 | 2.758677e-55 | -8.615850e-47 |
| Msa0936410 | Msa1103500 | 0.801469 | 8.874040e-49 | -8.615850e-47 |
| Msa0947660 | Msa1103500 | 0.801554 | 8.525133e-49 | -8.615850e-47 |
| Msa0972670 | Msa1103500 | 0.814636 | 1.392986e-51 | -8.615850e-47 |
| Msa0973250 | Msa1103500 | 0.800974 | 1.120480e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1103500 | MtrunA17_Chr4g0062701 | 98.485 | 66 | 1 | 0 | 2 | 67 | 876 | 941 | 5.84e-40 | 138 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1103500 | AT3G18524.1 | 45.455 | 66 | 36 | 0 | 2 | 67 | 871 | 936 | 1.33e-14 | 66.6 |
Find 32 sgRNAs with CRISPR-Local
Find 110 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAACAAATGCTTCAAGAATT+TGG | 0.163300 | 7_3:-39374618 | None:intergenic |
| AAGAATTTGGCGAGCCTTTA+CGG | 0.238865 | 7_3:-39374605 | None:intergenic |
| CAGCAATTTCTTGGCATATA+AGG | 0.300692 | 7_3:+39374192 | None:intergenic |
| TATTTGTTTCAGCAATTTCT+TGG | 0.303880 | 7_3:+39374183 | None:intergenic |
| AAATGCAACCTAATTTAAAA+AGG | 0.317673 | 7_3:-39375047 | None:intergenic |
| GAAATAGTGTAACCTTATTA+TGG | 0.319501 | 7_3:+39374287 | Msa1103500:exon |
| GTAGAATCGTGCAATGGTTC+TGG | 0.354488 | 7_3:+39374978 | Msa1103500:three_prime_UTR |
| GTCTAATACCATATGTCAAA+TGG | 0.358396 | 7_3:+39374817 | Msa1103500:three_prime_UTR |
| GACATATTACCTCCATAATA+AGG | 0.360101 | 7_3:-39374299 | None:intergenic |
| ACCACAACCCATTTGACATA+TGG | 0.364150 | 7_3:-39374825 | None:intergenic |
| AAGGAGTAGTCCAGTGGTAT+AGG | 0.406046 | 7_3:-39374942 | None:intergenic |
| ATACCACTGGACTACTCCTT+TGG | 0.418478 | 7_3:+39374945 | Msa1103500:three_prime_UTR |
| CGCAAGCTTGGCAAGAAGTA+AGG | 0.428510 | 7_3:+39374668 | Msa1103500:CDS |
| AAACTGATGAGATGTCTAAA+GGG | 0.458547 | 7_3:+39374581 | Msa1103500:CDS |
| GAAACTGATGAGATGTCTAA+AGG | 0.470476 | 7_3:+39374580 | Msa1103500:CDS |
| AGGATGCACAACACTGTCAT+TGG | 0.479566 | 7_3:+39374713 | Msa1103500:CDS |
| TCTAATACCATATGTCAAAT+GGG | 0.484656 | 7_3:+39374818 | Msa1103500:three_prime_UTR |
| TGTTGGTAGGTTACCCATGC+AGG | 0.486815 | 7_3:+39374766 | Msa1103500:three_prime_UTR |
| CCATGGACAAAACGCAAGCT+TGG | 0.498752 | 7_3:+39374656 | Msa1103500:CDS |
| GTTGAAAGATAATTTAGAGA+AGG | 0.504906 | 7_3:+39374693 | Msa1103500:CDS |
| ACCATATGTCAAATGGGTTG+TGG | 0.522082 | 7_3:+39374824 | Msa1103500:three_prime_UTR |
| CAAAACTCACATGTCCTGCA+TGG | 0.539319 | 7_3:-39374780 | None:intergenic |
| GATGTCTAAAGGGGCCGTAA+AGG | 0.542377 | 7_3:+39374591 | Msa1103500:CDS |
| TGGTGTCCAACCTATACCAC+TGG | 0.545776 | 7_3:+39374932 | Msa1103500:three_prime_UTR |
| TGCTTTGCCACTAGAAACCA+TGG | 0.560545 | 7_3:+39374639 | Msa1103500:CDS |
| AGTAGTCCAGTGGTATAGGT+TGG | 0.570697 | 7_3:-39374938 | None:intergenic |
| AAAACTCACATGTCCTGCAT+GGG | 0.586431 | 7_3:-39374779 | None:intergenic |
| ATAGTGTAACCTTATTATGG+AGG | 0.632352 | 7_3:+39374290 | Msa1103500:exon |
| TTCTACTCTAACATTACCAA+AGG | 0.650856 | 7_3:-39374961 | None:intergenic |
| AACTGATGAGATGTCTAAAG+GGG | 0.665562 | 7_3:+39374582 | Msa1103500:CDS |
| GTTAGAGTAGAATCGTGCAA+TGG | 0.682443 | 7_3:+39374972 | Msa1103500:three_prime_UTR |
| TTACCAAAGGAGTAGTCCAG+TGG | 0.713171 | 7_3:-39374948 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | GAAGTTTTCTAAATTAGATA+CGG | - | chr7_3:39374260-39374279 | None:intergenic | 20.0% |
| !! | TTGAAATATTGAAACAACAA+GGG | - | chr7_3:39374349-39374368 | None:intergenic | 20.0% |
| !! | ATTGAAATATTGAAACAACA+AGG | - | chr7_3:39374350-39374369 | None:intergenic | 20.0% |
| !! | TGTCAATAATAAAAGAATAC+TGG | + | chr7_3:39374409-39374428 | Msa1103500:intron | 20.0% |
| !!! | CAAAAATTCTAGTTGAAAAA+AGG | + | chr7_3:39374739-39374758 | Msa1103500:exon | 20.0% |
| !!! | GTAGTTTTTTTTTTTTTCAG+TGG | + | chr7_3:39374852-39374871 | Msa1103500:three_prime_UTR | 20.0% |
| !!! | AAAAGAGAATTTTTAGTAGT+AGG | + | chr7_3:39374908-39374927 | Msa1103500:three_prime_UTR | 20.0% |
| !!! | GAAGTTTTCTAAATTAGATA+CGG | - | chr7_3:39374260-39374279 | None:intergenic | 20.0% |
| !! | TTGAAATATTGAAACAACAA+GGG | - | chr7_3:39374349-39374368 | None:intergenic | 20.0% |
| !! | ATTGAAATATTGAAACAACA+AGG | - | chr7_3:39374350-39374369 | None:intergenic | 20.0% |
| !! | TGTCAATAATAAAAGAATAC+TGG | + | chr7_3:39374409-39374428 | Msa1103500:intron | 20.0% |
| !!! | CAAAAATTCTAGTTGAAAAA+AGG | + | chr7_3:39374739-39374758 | Msa1103500:exon | 20.0% |
| !!! | GTAGTTTTTTTTTTTTTCAG+TGG | + | chr7_3:39374852-39374871 | Msa1103500:three_prime_UTR | 20.0% |
| !!! | AAAAGAGAATTTTTAGTAGT+AGG | + | chr7_3:39374908-39374927 | Msa1103500:three_prime_UTR | 20.0% |
| ! | GAAATAGTGTAACCTTATTA+TGG | + | chr7_3:39374287-39374306 | Msa1103500:exon | 25.0% |
| ! | TGAAATATTGAAACAACAAG+GGG | - | chr7_3:39374348-39374367 | None:intergenic | 25.0% |
| ! | TTTGATGAAAATTTCACCAT+TGG | + | chr7_3:39374494-39374513 | Msa1103500:intron | 25.0% |
| ! | GTTGAAAGATAATTTAGAGA+AGG | + | chr7_3:39374693-39374712 | Msa1103500:CDS | 25.0% |
| ! | TCTAATACCATATGTCAAAT+GGG | + | chr7_3:39374818-39374837 | Msa1103500:three_prime_UTR | 25.0% |
| ! | GAAATAGTGTAACCTTATTA+TGG | + | chr7_3:39374287-39374306 | Msa1103500:exon | 25.0% |
| ! | TGAAATATTGAAACAACAAG+GGG | - | chr7_3:39374348-39374367 | None:intergenic | 25.0% |
| ! | TTTGATGAAAATTTCACCAT+TGG | + | chr7_3:39374494-39374513 | Msa1103500:intron | 25.0% |
| ! | GTTGAAAGATAATTTAGAGA+AGG | + | chr7_3:39374693-39374712 | Msa1103500:CDS | 25.0% |
| ! | TCTAATACCATATGTCAAAT+GGG | + | chr7_3:39374818-39374837 | Msa1103500:three_prime_UTR | 25.0% |
| ATAGTGTAACCTTATTATGG+AGG | + | chr7_3:39374290-39374309 | Msa1103500:exon | 30.0% | |
| GACATATTACCTCCATAATA+AGG | - | chr7_3:39374302-39374321 | None:intergenic | 30.0% | |
| ATGAAAATTTCACCATTGGA+AGG | + | chr7_3:39374498-39374517 | Msa1103500:intron | 30.0% | |
| ACTTTAATGATTCCTTCCAA+TGG | - | chr7_3:39374513-39374532 | None:intergenic | 30.0% | |
| ! | GTTTTGCGCTTATAATTTTC+AGG | + | chr7_3:39374531-39374550 | Msa1103500:intron | 30.0% |
| AAACTGATGAGATGTCTAAA+GGG | + | chr7_3:39374581-39374600 | Msa1103500:CDS | 30.0% | |
| CAACAAATGCTTCAAGAATT+TGG | - | chr7_3:39374621-39374640 | None:intergenic | 30.0% | |
| AGTTGAAAAAAGGAGTTTGT+TGG | + | chr7_3:39374749-39374768 | Msa1103500:exon | 30.0% | |
| GTCTAATACCATATGTCAAA+TGG | + | chr7_3:39374817-39374836 | Msa1103500:three_prime_UTR | 30.0% | |
| !!! | GAGAATTTTTAGTAGTAGGT+TGG | + | chr7_3:39374912-39374931 | Msa1103500:three_prime_UTR | 30.0% |
| TTCTACTCTAACATTACCAA+AGG | - | chr7_3:39374964-39374983 | None:intergenic | 30.0% | |
| ! | TTTGAAGAGACTAAGGTTTT+TGG | + | chr7_3:39375013-39375032 | Msa1103500:three_prime_UTR | 30.0% |
| ATAGTGTAACCTTATTATGG+AGG | + | chr7_3:39374290-39374309 | Msa1103500:exon | 30.0% | |
| GACATATTACCTCCATAATA+AGG | - | chr7_3:39374302-39374321 | None:intergenic | 30.0% | |
| ATGAAAATTTCACCATTGGA+AGG | + | chr7_3:39374498-39374517 | Msa1103500:intron | 30.0% | |
| ACTTTAATGATTCCTTCCAA+TGG | - | chr7_3:39374513-39374532 | None:intergenic | 30.0% | |
| ! | GTTTTGCGCTTATAATTTTC+AGG | + | chr7_3:39374531-39374550 | Msa1103500:intron | 30.0% |
| AAACTGATGAGATGTCTAAA+GGG | + | chr7_3:39374581-39374600 | Msa1103500:CDS | 30.0% | |
| CAACAAATGCTTCAAGAATT+TGG | - | chr7_3:39374621-39374640 | None:intergenic | 30.0% | |
| AGTTGAAAAAAGGAGTTTGT+TGG | + | chr7_3:39374749-39374768 | Msa1103500:exon | 30.0% | |
| GTCTAATACCATATGTCAAA+TGG | + | chr7_3:39374817-39374836 | Msa1103500:three_prime_UTR | 30.0% | |
| !!! | GAGAATTTTTAGTAGTAGGT+TGG | + | chr7_3:39374912-39374931 | Msa1103500:three_prime_UTR | 30.0% |
| TTCTACTCTAACATTACCAA+AGG | - | chr7_3:39374964-39374983 | None:intergenic | 30.0% | |
| ! | TTTGAAGAGACTAAGGTTTT+TGG | + | chr7_3:39375013-39375032 | Msa1103500:three_prime_UTR | 30.0% |
| CACGAGTTAGAAGAAAAATC+GGG | - | chr7_3:39374227-39374246 | None:intergenic | 35.0% | |
| CCACGAGTTAGAAGAAAAAT+CGG | - | chr7_3:39374228-39374247 | None:intergenic | 35.0% | |
| !! | TTGCGCTTATAATTTTCAGG+TGG | + | chr7_3:39374534-39374553 | Msa1103500:intron | 35.0% |
| !!! | TGCGCTTATAATTTTCAGGT+GGG | + | chr7_3:39374535-39374554 | Msa1103500:intron | 35.0% |
| GAAACTGATGAGATGTCTAA+AGG | + | chr7_3:39374580-39374599 | Msa1103500:CDS | 35.0% | |
| AACTGATGAGATGTCTAAAG+GGG | + | chr7_3:39374582-39374601 | Msa1103500:CDS | 35.0% | |
| !! | GAAAAAAGGAGTTTGTTGGT+AGG | + | chr7_3:39374753-39374772 | Msa1103500:three_prime_UTR | 35.0% |
| CACGAGTTAGAAGAAAAATC+GGG | - | chr7_3:39374227-39374246 | None:intergenic | 35.0% | |
| CCACGAGTTAGAAGAAAAAT+CGG | - | chr7_3:39374228-39374247 | None:intergenic | 35.0% | |
| !! | TTGCGCTTATAATTTTCAGG+TGG | + | chr7_3:39374534-39374553 | Msa1103500:intron | 35.0% |
| !!! | TGCGCTTATAATTTTCAGGT+GGG | + | chr7_3:39374535-39374554 | Msa1103500:intron | 35.0% |
| GAAACTGATGAGATGTCTAA+AGG | + | chr7_3:39374580-39374599 | Msa1103500:CDS | 35.0% | |
| AACTGATGAGATGTCTAAAG+GGG | + | chr7_3:39374582-39374601 | Msa1103500:CDS | 35.0% | |
| !! | GAAAAAAGGAGTTTGTTGGT+AGG | + | chr7_3:39374753-39374772 | Msa1103500:three_prime_UTR | 35.0% |
| ! | CCGATTTTTCTTCTAACTCG+TGG | + | chr7_3:39374225-39374244 | Msa1103500:five_prime_UTR | 40.0% |
| TGAAACAACAAGGGGATTAC+AGG | - | chr7_3:39374340-39374359 | None:intergenic | 40.0% | |
| AAGAATTTGGCGAGCCTTTA+CGG | - | chr7_3:39374608-39374627 | None:intergenic | 40.0% | |
| !! | GTTTTGTCCATGGTTTCTAG+TGG | - | chr7_3:39374649-39374668 | None:intergenic | 40.0% |
| AAAACTCACATGTCCTGCAT+GGG | - | chr7_3:39374782-39374801 | None:intergenic | 40.0% | |
| !! | ACCATATGTCAAATGGGTTG+TGG | + | chr7_3:39374824-39374843 | Msa1103500:three_prime_UTR | 40.0% |
| ACCACAACCCATTTGACATA+TGG | - | chr7_3:39374828-39374847 | None:intergenic | 40.0% | |
| GTTAGAGTAGAATCGTGCAA+TGG | + | chr7_3:39374972-39374991 | Msa1103500:three_prime_UTR | 40.0% | |
| !! | GTGCACTTTTGAAGAGACTA+AGG | + | chr7_3:39375006-39375025 | Msa1103500:three_prime_UTR | 40.0% |
| ! | CCGATTTTTCTTCTAACTCG+TGG | + | chr7_3:39374225-39374244 | Msa1103500:five_prime_UTR | 40.0% |
| TGAAACAACAAGGGGATTAC+AGG | - | chr7_3:39374340-39374359 | None:intergenic | 40.0% | |
| AAGAATTTGGCGAGCCTTTA+CGG | - | chr7_3:39374608-39374627 | None:intergenic | 40.0% | |
| !! | GTTTTGTCCATGGTTTCTAG+TGG | - | chr7_3:39374649-39374668 | None:intergenic | 40.0% |
| AAAACTCACATGTCCTGCAT+GGG | - | chr7_3:39374782-39374801 | None:intergenic | 40.0% | |
| !! | ACCATATGTCAAATGGGTTG+TGG | + | chr7_3:39374824-39374843 | Msa1103500:three_prime_UTR | 40.0% |
| ACCACAACCCATTTGACATA+TGG | - | chr7_3:39374828-39374847 | None:intergenic | 40.0% | |
| GTTAGAGTAGAATCGTGCAA+TGG | + | chr7_3:39374972-39374991 | Msa1103500:three_prime_UTR | 40.0% | |
| !! | GTGCACTTTTGAAGAGACTA+AGG | + | chr7_3:39375006-39375025 | Msa1103500:three_prime_UTR | 40.0% |
| TAGAAGAAAAATCGGGCTGC+AGG | - | chr7_3:39374220-39374239 | None:intergenic | 45.0% | |
| TGCTTTGCCACTAGAAACCA+TGG | + | chr7_3:39374639-39374658 | Msa1103500:CDS | 45.0% | |
| AGGATGCACAACACTGTCAT+TGG | + | chr7_3:39374713-39374732 | Msa1103500:CDS | 45.0% | |
| CAAAACTCACATGTCCTGCA+TGG | - | chr7_3:39374783-39374802 | None:intergenic | 45.0% | |
| AGTAGTCCAGTGGTATAGGT+TGG | - | chr7_3:39374941-39374960 | None:intergenic | 45.0% | |
| AAGGAGTAGTCCAGTGGTAT+AGG | - | chr7_3:39374945-39374964 | None:intergenic | 45.0% | |
| ATACCACTGGACTACTCCTT+TGG | + | chr7_3:39374945-39374964 | Msa1103500:three_prime_UTR | 45.0% | |
| TTACCAAAGGAGTAGTCCAG+TGG | - | chr7_3:39374951-39374970 | None:intergenic | 45.0% | |
| GTAGAATCGTGCAATGGTTC+TGG | + | chr7_3:39374978-39374997 | Msa1103500:three_prime_UTR | 45.0% | |
| TAGAAGAAAAATCGGGCTGC+AGG | - | chr7_3:39374220-39374239 | None:intergenic | 45.0% | |
| TGCTTTGCCACTAGAAACCA+TGG | + | chr7_3:39374639-39374658 | Msa1103500:CDS | 45.0% | |
| AGGATGCACAACACTGTCAT+TGG | + | chr7_3:39374713-39374732 | Msa1103500:CDS | 45.0% | |
| CAAAACTCACATGTCCTGCA+TGG | - | chr7_3:39374783-39374802 | None:intergenic | 45.0% | |
| AGTAGTCCAGTGGTATAGGT+TGG | - | chr7_3:39374941-39374960 | None:intergenic | 45.0% | |
| AAGGAGTAGTCCAGTGGTAT+AGG | - | chr7_3:39374945-39374964 | None:intergenic | 45.0% | |
| ATACCACTGGACTACTCCTT+TGG | + | chr7_3:39374945-39374964 | Msa1103500:three_prime_UTR | 45.0% | |
| TTACCAAAGGAGTAGTCCAG+TGG | - | chr7_3:39374951-39374970 | None:intergenic | 45.0% | |
| GTAGAATCGTGCAATGGTTC+TGG | + | chr7_3:39374978-39374997 | Msa1103500:three_prime_UTR | 45.0% | |
| GATGTCTAAAGGGGCCGTAA+AGG | + | chr7_3:39374591-39374610 | Msa1103500:CDS | 50.0% | |
| ! | CCAAGCTTGCGTTTTGTCCA+TGG | - | chr7_3:39374659-39374678 | None:intergenic | 50.0% |
| CCATGGACAAAACGCAAGCT+TGG | + | chr7_3:39374656-39374675 | Msa1103500:CDS | 50.0% | |
| CGCAAGCTTGGCAAGAAGTA+AGG | + | chr7_3:39374668-39374687 | Msa1103500:CDS | 50.0% | |
| ! | TGTTGGTAGGTTACCCATGC+AGG | + | chr7_3:39374766-39374785 | Msa1103500:three_prime_UTR | 50.0% |
| TGGTGTCCAACCTATACCAC+TGG | + | chr7_3:39374932-39374951 | Msa1103500:three_prime_UTR | 50.0% | |
| GATGTCTAAAGGGGCCGTAA+AGG | + | chr7_3:39374591-39374610 | Msa1103500:CDS | 50.0% | |
| ! | CCAAGCTTGCGTTTTGTCCA+TGG | - | chr7_3:39374659-39374678 | None:intergenic | 50.0% |
| CCATGGACAAAACGCAAGCT+TGG | + | chr7_3:39374656-39374675 | Msa1103500:CDS | 50.0% | |
| CGCAAGCTTGGCAAGAAGTA+AGG | + | chr7_3:39374668-39374687 | Msa1103500:CDS | 50.0% | |
| ! | TGTTGGTAGGTTACCCATGC+AGG | + | chr7_3:39374766-39374785 | Msa1103500:three_prime_UTR | 50.0% |
| TGGTGTCCAACCTATACCAC+TGG | + | chr7_3:39374932-39374951 | Msa1103500:three_prime_UTR | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_3 | gene | 39374193 | 39375057 | 39374193 | ID=Msa1103500;Name=Msa1103500 |
| chr7_3 | mRNA | 39374193 | 39375057 | 39374193 | ID=Msa1103500-mRNA-1;Parent=Msa1103500;Name=Msa1103500-mRNA-1;_AED=0.00;_eAED=0.00;_QI=113|1|1|1|1|1|2|307|67 |
| chr7_3 | exon | 39374193 | 39374311 | 39374193 | ID=Msa1103500-mRNA-1:exon:7969;Parent=Msa1103500-mRNA-1 |
| chr7_3 | exon | 39374553 | 39375057 | 39374553 | ID=Msa1103500-mRNA-1:exon:7970;Parent=Msa1103500-mRNA-1 |
| chr7_3 | five_prime_UTR | 39374193 | 39374305 | 39374193 | ID=Msa1103500-mRNA-1:five_prime_utr;Parent=Msa1103500-mRNA-1 |
| chr7_3 | CDS | 39374306 | 39374311 | 39374306 | ID=Msa1103500-mRNA-1:cds;Parent=Msa1103500-mRNA-1 |
| chr7_3 | CDS | 39374553 | 39374750 | 39374553 | ID=Msa1103500-mRNA-1:cds;Parent=Msa1103500-mRNA-1 |
| chr7_3 | three_prime_UTR | 39374751 | 39375057 | 39374751 | ID=Msa1103500-mRNA-1:three_prime_utr;Parent=Msa1103500-mRNA-1 |
| Gene Sequence |
| Protein sequence |
