Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0179570 | XP_013469853.1 | 95.868 | 363 | 15 | 0 | 1 | 363 | 1 | 363 | 0.0 | 719 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0179570 | A0A072VQG9 | 95.868 | 363 | 15 | 0 | 1 | 363 | 1 | 363 | 0.0 | 719 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0033190 | Msa0179570 | -0.801752 | 7.761974e-49 | -8.615850e-47 |
| Msa0074860 | Msa0179570 | -0.804059 | 2.590439e-49 | -8.615850e-47 |
| Msa0079840 | Msa0179570 | -0.804645 | 1.955801e-49 | -8.615850e-47 |
| Msa0088290 | Msa0179570 | 0.918061 | 2.479225e-86 | -8.615850e-47 |
| Msa0116780 | Msa0179570 | -0.800563 | 1.359067e-48 | -8.615850e-47 |
| Msa0135030 | Msa0179570 | 0.804368 | 2.233946e-49 | -8.615850e-47 |
| Msa0141410 | Msa0179570 | 0.801423 | 9.066076e-49 | -8.615850e-47 |
| Msa0167160 | Msa0179570 | -0.810528 | 1.101982e-50 | -8.615850e-47 |
| Msa0179570 | Msa0212950 | -0.804060 | 2.589658e-49 | -8.615850e-47 |
| Msa0179570 | Msa0224870 | 0.804381 | 2.220217e-49 | -8.615850e-47 |
| Msa0179570 | Msa0234150 | 0.812492 | 4.124834e-51 | -8.615850e-47 |
| Msa0179570 | Msa0253230 | -0.814732 | 1.325906e-51 | -8.615850e-47 |
| Msa0179570 | Msa0259770 | -0.820169 | 7.905751e-53 | -8.615850e-47 |
| Msa0179570 | Msa0261350 | -0.802772 | 4.788206e-49 | -8.615850e-47 |
| Msa0179570 | Msa0280160 | 0.802143 | 6.451209e-49 | -8.615850e-47 |
| Msa0179570 | Msa0287480 | 0.819354 | 1.213767e-52 | -8.615850e-47 |
| Msa0179570 | Msa0299130 | -0.806681 | 7.310251e-50 | -8.615850e-47 |
| Msa0179570 | Msa0305440 | -0.810199 | 1.297713e-50 | -8.615850e-47 |
| Msa0179570 | Msa0319680 | 0.829515 | 4.931312e-55 | -8.615850e-47 |
| Msa0179570 | Msa0320170 | 0.807704 | 4.438045e-50 | -8.615850e-47 |
| Msa0179570 | Msa0331190 | 0.801738 | 7.814667e-49 | -8.615850e-47 |
| Msa0179570 | Msa0378320 | 0.801904 | 7.226213e-49 | -8.615850e-47 |
| Msa0179570 | Msa0405200 | 0.804273 | 2.337768e-49 | -8.615850e-47 |
| Msa0179570 | Msa0419150 | -0.811175 | 7.985368e-51 | -8.615850e-47 |
| Msa0179570 | Msa0449490 | 0.803274 | 3.770266e-49 | -8.615850e-47 |
| Msa0179570 | Msa0464980 | -0.815058 | 1.123143e-51 | -8.615850e-47 |
| Msa0179570 | Msa0497680 | 0.811874 | 5.628018e-51 | -8.615850e-47 |
| Msa0179570 | Msa0531050 | 0.820665 | 6.082035e-53 | -8.615850e-47 |
| Msa0179570 | Msa0557440 | -0.810719 | 1.002123e-50 | -8.615850e-47 |
| Msa0179570 | Msa0565180 | 0.816969 | 4.203097e-52 | -8.615850e-47 |
| Msa0179570 | Msa0580890 | -0.801303 | 9.594754e-49 | -8.615850e-47 |
| Msa0179570 | Msa0615070 | 0.801545 | 8.562468e-49 | -8.615850e-47 |
| Msa0179570 | Msa0675630 | 0.810681 | 1.021342e-50 | -8.615850e-47 |
| Msa0179570 | Msa0695250 | -0.815381 | 9.519960e-52 | -8.615850e-47 |
| Msa0179570 | Msa0701430 | 0.817242 | 3.649382e-52 | -8.615850e-47 |
| Msa0179570 | Msa0829990 | 0.803973 | 2.698900e-49 | -8.615850e-47 |
| Msa0179570 | Msa0873910 | 0.812256 | 4.645046e-51 | -8.615850e-47 |
| Msa0179570 | Msa0905570 | 0.823277 | 1.510162e-53 | -8.615850e-47 |
| Msa0179570 | Msa0945160 | -0.809412 | 1.916457e-50 | -8.615850e-47 |
| Msa0179570 | Msa0947550 | -0.805362 | 1.384467e-49 | -8.615850e-47 |
| Msa0179570 | Msa0975960 | 0.809685 | 1.674601e-50 | -8.615850e-47 |
| Msa0179570 | Msa1001120 | 0.800463 | 1.424308e-48 | -8.615850e-47 |
| Msa0179570 | Msa1035050 | 0.827952 | 1.177620e-54 | -8.615850e-47 |
| Msa0179570 | Msa1044050 | -0.800065 | 1.716309e-48 | -8.615850e-47 |
| Msa0179570 | Msa1075090 | 0.828936 | 6.813349e-55 | -8.615850e-47 |
| Msa0179570 | Msa1102410 | -0.803472 | 3.429541e-49 | -8.615850e-47 |
| Msa0179570 | Msa1107220 | 0.808494 | 3.012966e-50 | -8.615850e-47 |
| Msa0179570 | Msa1107250 | 0.815810 | 7.638177e-52 | -8.615850e-47 |
| Msa0179570 | Msa1130150 | -0.815386 | 9.492360e-52 | -8.615850e-47 |
| Msa0179570 | Msa1144380 | -0.806372 | 8.495478e-50 | -8.615850e-47 |
| Msa0179570 | Msa1150740 | 0.807098 | 5.967308e-50 | -8.615850e-47 |
| Msa0179570 | Msa1156120 | -0.801866 | 7.354675e-49 | -8.615850e-47 |
| Msa0179570 | Msa1185270 | 0.807584 | 4.707668e-50 | -8.615850e-47 |
| Msa0179570 | Msa1199540 | -0.808815 | 2.572881e-50 | -8.615850e-47 |
| Msa0179570 | Msa1202110 | 0.808869 | 2.505767e-50 | -8.615850e-47 |
| Msa0179570 | Msa1212150 | -0.806663 | 7.375471e-50 | -8.615850e-47 |
| Msa0179570 | Msa1239210 | 0.810131 | 1.342604e-50 | -8.615850e-47 |
| Msa0179570 | Msa1254870 | 0.805914 | 1.060582e-49 | -8.615850e-47 |
| Msa0179570 | Msa1277270 | -0.803779 | 2.961395e-49 | -8.615850e-47 |
| Msa0179570 | Msa1279200 | -0.803152 | 3.994729e-49 | -8.615850e-47 |
| Msa0179570 | Msa1328430 | 0.804184 | 2.440535e-49 | -8.615850e-47 |
| Msa0179570 | Msa1341710 | -0.800331 | 1.515633e-48 | -8.615850e-47 |
| Msa0179570 | Msa1373420 | -0.800796 | 1.218137e-48 | -8.615850e-47 |
| Msa0179570 | Msa1386910 | -0.808075 | 3.701243e-50 | -8.615850e-47 |
| Msa0179570 | Msa1395200 | -0.801302 | 9.598790e-49 | -8.615850e-47 |
| Msa0179570 | Msa1410480 | -0.810340 | 1.210145e-50 | -8.615850e-47 |
| Msa0179570 | Msa1410500 | -0.811156 | 8.058534e-51 | -8.615850e-47 |
| Msa0179570 | Msa1415510 | -0.816503 | 5.348931e-52 | -8.615850e-47 |
| Msa0179570 | Msa1432730 | -0.803142 | 4.014691e-49 | -8.615850e-47 |
| Msa0179570 | Msa1459680 | -0.805645 | 1.207712e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0179570 | MtrunA17_Chr1g0205481 | 95.604 | 364 | 15 | 1 | 1 | 363 | 1 | 364 | 0.0 | 715 |
| Msa0179570 | MtrunA17_Chr1g0205491 | 81.593 | 364 | 65 | 2 | 1 | 362 | 1 | 364 | 0.0 | 605 |
| Msa0179570 | MtrunA17_Chr1g0160271 | 70.604 | 364 | 68 | 2 | 1 | 363 | 1 | 326 | 0.0 | 509 |
| Msa0179570 | MtrunA17_Chr1g0160261 | 59.908 | 217 | 36 | 1 | 52 | 268 | 1 | 166 | 5.58e-76 | 233 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0179570 | AT3G54970.1 | 48.209 | 363 | 170 | 7 | 1 | 358 | 1 | 350 | 2.63e-106 | 316 |
| Msa0179570 | AT3G54970.4 | 49.038 | 312 | 144 | 6 | 52 | 358 | 1 | 302 | 5.71e-88 | 268 |
| Msa0179570 | AT3G54970.2 | 49.333 | 300 | 135 | 6 | 1 | 296 | 1 | 287 | 5.09e-86 | 263 |
| Msa0179570 | AT3G54970.6 | 49.169 | 301 | 136 | 6 | 1 | 297 | 1 | 288 | 5.79e-86 | 263 |
| Msa0179570 | AT3G54970.5 | 46.324 | 272 | 129 | 6 | 1 | 268 | 1 | 259 | 3.23e-68 | 215 |
| Msa0179570 | AT3G54970.3 | 50.400 | 250 | 110 | 5 | 52 | 297 | 1 | 240 | 1.58e-67 | 214 |
Find 102 sgRNAs with CRISPR-Local
Find 247 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AACTCTTGTTACTGGTAATT+TGG | 0.120632 | 1_4:-67148618 | Msa0179570:CDS |
| AGTTTCCAAGCTGGCAAATT+TGG | 0.216666 | 1_4:+67148731 | None:intergenic |
| CATGTACATATGTTACTTAT+TGG | 0.218165 | 1_4:+67146027 | None:intergenic |
| ACTTATGTTCCTCCTCAATT+TGG | 0.238078 | 1_4:-67148521 | Msa0179570:CDS |
| TTCCTCCTCAATTTGGTATT+CGG | 0.238577 | 1_4:-67148514 | Msa0179570:CDS |
| GTGCTTCATGCTTGATGTTT+TGG | 0.241820 | 1_4:-67148859 | Msa0179570:CDS |
| GGGAAAGCCCCGTCTGATTA+TGG | 0.267527 | 1_4:-67147485 | Msa0179570:CDS |
| TATCTGTGTTTGAATAAATT+AGG | 0.281711 | 1_4:-67145628 | Msa0179570:three_prime_UTR |
| ATCAGTGATGGTGTTCTTCC+AGG | 0.297425 | 1_4:-67147428 | Msa0179570:CDS |
| ATCATTACAACTCTTGTTAC+TGG | 0.301146 | 1_4:-67148626 | Msa0179570:CDS |
| CATTTGGCTGTTGGCGGCTA+TGG | 0.301439 | 1_4:-67148479 | Msa0179570:CDS |
| TCCTCCTCAATTTGGTATTC+GGG | 0.303663 | 1_4:-67148513 | Msa0179570:CDS |
| TATAGATAAATCAACTTCTT+AGG | 0.305854 | 1_4:-67145795 | Msa0179570:three_prime_UTR |
| GCAACATGCAGATAGTATTC+AGG | 0.308908 | 1_4:-67146533 | Msa0179570:CDS |
| CATGGTCAAAACATGAAATC+TGG | 0.311226 | 1_4:-67147052 | Msa0179570:CDS |
| ACATATGTTTGCTTAATTAG+AGG | 0.317335 | 1_4:+67145742 | None:intergenic |
| GGTCCATGATATATCCTTCC+AGG | 0.320534 | 1_4:+67146477 | None:intergenic |
| TTTCATCCCAGCAAAGGTTT+AGG | 0.328982 | 1_4:+67145996 | None:intergenic |
| GACACTTGTTAACGATTCAT+TGG | 0.337668 | 1_4:-67148699 | Msa0179570:CDS |
| ATCTACTCATTGAGAAACTA+TGG | 0.346695 | 1_4:+67145914 | None:intergenic |
| ACTAGTTGGCGTATTATTCC+TGG | 0.368986 | 1_4:+67147410 | None:intergenic |
| TGAAGATCCTAAACCTTTGC+TGG | 0.374367 | 1_4:-67146003 | Msa0179570:three_prime_UTR |
| TCGGGGAAATGGTGAACATT+TGG | 0.391554 | 1_4:-67148495 | Msa0179570:CDS |
| AAACCTTTGCTGGGATGAAA+TGG | 0.395756 | 1_4:-67145993 | Msa0179570:three_prime_UTR |
| CAATTTGGTATTCGGGGAAA+TGG | 0.396980 | 1_4:-67148506 | Msa0179570:CDS |
| CAGACATGATATCGGTAAAC+TGG | 0.400792 | 1_4:+67145863 | None:intergenic |
| TGTCACCAAATTTGCCAGCT+TGG | 0.405069 | 1_4:-67148736 | Msa0179570:CDS |
| TAGGATTCGGTTTCCGATGA+TGG | 0.405731 | 1_4:-67147506 | Msa0179570:CDS |
| TTTAAGATATCTCTTCAGTA+AGG | 0.413390 | 1_4:-67149515 | Msa0179570:CDS |
| GGATATATCATGGACCAAAA+AGG | 0.416592 | 1_4:-67146470 | Msa0179570:CDS |
| GAACTGTTGCTGTCTTATAA+TGG | 0.422416 | 1_4:-67148203 | Msa0179570:CDS |
| TGCACTTGTGCAGGGTATGC+AGG | 0.429202 | 1_4:-67147109 | Msa0179570:intron |
| GGTTATGGAGAAAGCAACTT+TGG | 0.430081 | 1_4:-67146058 | Msa0179570:CDS |
| CAGCTGCAAAATATTCAGAT+TGG | 0.435154 | 1_4:-67148445 | Msa0179570:CDS |
| ATGTTGCTAACATGGCCTTT+TGG | 0.436630 | 1_4:+67145766 | None:intergenic |
| GTCTGTAACAGTGCTATAAC+TGG | 0.443237 | 1_4:-67145651 | Msa0179570:three_prime_UTR |
| GTCTTTCTTGAAGCTCATCC+AGG | 0.445380 | 1_4:-67149454 | Msa0179570:intron |
| AGACACACAATCATAAATCT+AGG | 0.451560 | 1_4:+67145670 | None:intergenic |
| AGCTGCAAAATATTCAGATT+GGG | 0.452477 | 1_4:-67148444 | Msa0179570:CDS |
| TTAGGATAAAACAGAATTTG+TGG | 0.457122 | 1_4:-67145610 | Msa0179570:three_prime_UTR |
| CTAATTAAGCAAACATATGT+TGG | 0.461263 | 1_4:-67145739 | Msa0179570:three_prime_UTR |
| ATGTATACGCCAACTGAAGC+GGG | 0.466676 | 1_4:+67145945 | None:intergenic |
| TCTTGTTACTGGTAATTTGG+AGG | 0.471836 | 1_4:-67148615 | Msa0179570:CDS |
| AATGGTGATCAAATACTTGA+AGG | 0.473996 | 1_4:-67148185 | Msa0179570:CDS |
| GGAAGAACACCATCACTGAT+AGG | 0.475333 | 1_4:+67147431 | None:intergenic |
| ATTTGGCTGTTGGCGGCTAT+GGG | 0.475928 | 1_4:-67148478 | Msa0179570:CDS |
| AAGTTGTTCAGACATGATAT+CGG | 0.485001 | 1_4:+67145855 | None:intergenic |
| CAAAATATTCAGATTGGGTA+AGG | 0.485171 | 1_4:-67148439 | Msa0179570:intron |
| GAGTAAATGCAGGATGGACC+AGG | 0.497705 | 1_4:-67146379 | Msa0179570:intron |
| AGGATTCGGTTTCCGATGAT+GGG | 0.501749 | 1_4:-67147505 | Msa0179570:CDS |
| TAATTAAGCAAACATATGTT+GGG | 0.506412 | 1_4:-67145738 | Msa0179570:three_prime_UTR |
| AACAACTTAACGAATAAGTC+AGG | 0.506651 | 1_4:-67145840 | Msa0179570:three_prime_UTR |
| GATGATCACAACTTTAATCC+AGG | 0.513020 | 1_4:-67146356 | Msa0179570:intron |
| ATGGTCAAAACATGAAATCT+GGG | 0.513865 | 1_4:-67147051 | Msa0179570:CDS |
| CTTCTTAGGCCACCTCCAAA+AGG | 0.515254 | 1_4:-67145781 | Msa0179570:three_prime_UTR |
| TGTTAACGATTCATTGGAGA+AGG | 0.518710 | 1_4:-67148693 | Msa0179570:CDS |
| ATGGAGAAAGCAACTTTGGA+AGG | 0.520760 | 1_4:-67146054 | Msa0179570:CDS |
| AAACCTGGAAGGATATATCA+TGG | 0.523522 | 1_4:-67146480 | Msa0179570:CDS |
| TTAGAGGCATGTTGCTAACA+TGG | 0.524435 | 1_4:+67145758 | None:intergenic |
| AATGGTGAACATTTGGCTGT+TGG | 0.529164 | 1_4:-67148488 | Msa0179570:CDS |
| GTTTCTCAATGAGTAGATGA+TGG | 0.531257 | 1_4:-67145909 | Msa0179570:three_prime_UTR |
| TGATGCTGGTCCGATCTGAT+TGG | 0.534555 | 1_4:-67145703 | Msa0179570:three_prime_UTR |
| TGGGCTGATTGCCATTCTGT+TGG | 0.539164 | 1_4:+67146508 | None:intergenic |
| GTCGAGAAGTTGCTCCATCA+TGG | 0.539467 | 1_4:-67147070 | Msa0179570:CDS |
| GGTGAACATTTGGCTGTTGG+CGG | 0.542329 | 1_4:-67148485 | Msa0179570:CDS |
| TGGCTGTTGGCGGCTATGGG+AGG | 0.546410 | 1_4:-67148475 | Msa0179570:CDS |
| ATGCAGGATTAGGAAGACTC+TGG | 0.555761 | 1_4:-67148252 | Msa0179570:intron |
| TGCAATGCAAGTTTCCAAGC+TGG | 0.556576 | 1_4:+67148722 | None:intergenic |
| AGCAACAGTTCTGTCACTGA+TGG | 0.558246 | 1_4:+67148215 | None:intergenic |
| TTAAGATATCTCTTCAGTAA+GGG | 0.558486 | 1_4:-67149514 | Msa0179570:CDS |
| TTTCCCCGAATACCAAATTG+AGG | 0.562586 | 1_4:+67148509 | None:intergenic |
| AGATATCTTAAACTTGACAT+TGG | 0.564311 | 1_4:+67149526 | None:intergenic |
| AACCATACTCAAGTACTAGT+TGG | 0.567061 | 1_4:+67147396 | None:intergenic |
| CAATAAGTAACATATGTACA+TGG | 0.567230 | 1_4:-67146026 | Msa0179570:CDS |
| TGTCCATTTCATCCCAGCAA+AGG | 0.567939 | 1_4:+67145990 | None:intergenic |
| ATGTCATTGCAGATAGCTTG+AGG | 0.568100 | 1_4:-67146561 | Msa0179570:intron |
| AGACGGGGCTTTCCCATCAT+CGG | 0.568285 | 1_4:+67147493 | None:intergenic |
| ATTAAAGTTGTGATCATCCC+TGG | 0.570286 | 1_4:+67146361 | None:intergenic |
| TGCAGGGTATGCAGGAGTGA+AGG | 0.571410 | 1_4:-67147101 | Msa0179570:intron |
| AATCAGCCCATTCTAAAACC+TGG | 0.574405 | 1_4:-67146495 | Msa0179570:CDS |
| GTATTCAGGTTCCAACAGAA+TGG | 0.575665 | 1_4:-67146519 | Msa0179570:CDS |
| AATGTATACGCCAACTGAAG+CGG | 0.583333 | 1_4:+67145944 | None:intergenic |
| AACAGTTCTGTCACTGATGG+AGG | 0.583762 | 1_4:+67148218 | None:intergenic |
| CCTCCTCAATTTGGTATTCG+GGG | 0.594882 | 1_4:-67148512 | Msa0179570:CDS |
| ATGATGGAAATGTAATCACT+TGG | 0.596142 | 1_4:-67145893 | Msa0179570:three_prime_UTR |
| AGCCCATTCTAAAACCTGGA+AGG | 0.604355 | 1_4:-67146491 | Msa0179570:CDS |
| GAACATCTGAGGTGTGTGAA+AGG | 0.607334 | 1_4:+67149488 | None:intergenic |
| GAAGATCCTAAACCTTTGCT+GGG | 0.615855 | 1_4:-67146002 | Msa0179570:three_prime_UTR |
| CAGACAGCTCCTATCAGTGA+TGG | 0.620267 | 1_4:-67147440 | Msa0179570:CDS |
| ATGGAGCAACTTCTCGACAT+GGG | 0.621778 | 1_4:+67147075 | None:intergenic |
| GATGGAGCAACTTCTCGACA+TGG | 0.624453 | 1_4:+67147074 | None:intergenic |
| TCAGATTTAAATATGAGCTG+AGG | 0.626076 | 1_4:+67148782 | None:intergenic |
| TGTATACGCCAACTGAAGCG+GGG | 0.639314 | 1_4:+67145946 | None:intergenic |
| GCTGGCAAATTTGGTGACAA+TGG | 0.641423 | 1_4:+67148740 | None:intergenic |
| CCCCGAATACCAAATTGAGG+AGG | 0.643632 | 1_4:+67148512 | None:intergenic |
| GTATACGCCAACTGAAGCGG+GGG | 0.660242 | 1_4:+67145947 | None:intergenic |
| CAGTTACAGACCAATCAGAT+CGG | 0.662133 | 1_4:+67145693 | None:intergenic |
| AGTAAATGCAGGATGGACCA+GGG | 0.672480 | 1_4:-67146378 | Msa0179570:intron |
| ACACACCTCAGATGTTCCTG+CGG | 0.686527 | 1_4:-67149482 | Msa0179570:CDS |
| GTCAAAACATGAAATCTGGG+AGG | 0.703539 | 1_4:-67147048 | Msa0179570:CDS |
| TTTATTTCCATAATCAGACG+GGG | 0.704888 | 1_4:+67147478 | None:intergenic |
| TGCATGTGAGACTATATCTG+AGG | 0.711093 | 1_4:-67148585 | Msa0179570:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTATTTTATCTTTTGTTAT+TGG | - | chr1_4:67146000-67146019 | Msa0179570:three_prime_UTR | 10.0% |
| !! | TTACTTTATACTTATTTATA+TGG | - | chr1_4:67147632-67147651 | Msa0179570:intron | 10.0% |
| !!! | TAATTTATTTCTATAACTTT+TGG | + | chr1_4:67148003-67148022 | None:intergenic | 10.0% |
| !! | TAACTTATATTAGAACAATT+TGG | - | chr1_4:67145976-67145995 | Msa0179570:three_prime_UTR | 15.0% |
| !! | TTAATCATTATAAATAGGTA+TGG | + | chr1_4:67147320-67147339 | None:intergenic | 15.0% |
| !!! | GGTTTTTAATCATTATAAAT+AGG | + | chr1_4:67147325-67147344 | None:intergenic | 15.0% |
| !! | TTGTAAATAACATAAAATTC+TGG | + | chr1_4:67147917-67147936 | None:intergenic | 15.0% |
| !!! | GAATTTTATGTTATTTACAA+TGG | - | chr1_4:67147917-67147936 | Msa0179570:intron | 15.0% |
| !!! | ATATTATTTTGTTTCTGTTT+TGG | + | chr1_4:67149394-67149413 | None:intergenic | 15.0% |
| !!! | CAAAATTTGAGATAATTACA+GGG | + | chr1_4:67146122-67146141 | None:intergenic | 20.0% |
| !!! | ACAAAATTTGAGATAATTAC+AGG | + | chr1_4:67146123-67146142 | None:intergenic | 20.0% |
| !!! | ATCAACTTTTTTTCTTTTTC+AGG | - | chr1_4:67146295-67146314 | Msa0179570:intron | 20.0% |
| !! | AGTAAATTCCTACTATTATT+TGG | - | chr1_4:67147382-67147401 | Msa0179570:intron | 20.0% |
| !! | GTAAATTCCTACTATTATTT+GGG | - | chr1_4:67147383-67147402 | Msa0179570:intron | 20.0% |
| !! | ATAAACAGAATTTAAACCAA+TGG | + | chr1_4:67147463-67147482 | None:intergenic | 20.0% |
| !!! | TTTTTATTTCCATAATCAGA+CGG | + | chr1_4:67147733-67147752 | None:intergenic | 20.0% |
| !! | ATACTATATAGATGTTTCAT+TGG | + | chr1_4:67148028-67148047 | None:intergenic | 20.0% |
| !! | AAATAACCAAACTTGTAAAT+AGG | + | chr1_4:67148499-67148518 | None:intergenic | 20.0% |
| !! | AAGTAGTAAATAAATTTACC+TGG | + | chr1_4:67148871-67148890 | None:intergenic | 20.0% |
| !!! | GTTTTATAATTGCAAATGTT+GGG | + | chr1_4:67149099-67149118 | None:intergenic | 20.0% |
| !! | TATAGATAAATCAACTTCTT+AGG | - | chr1_4:67149411-67149430 | Msa0179570:intron | 20.0% |
| !! | TAATTAAGCAAACATATGTT+GGG | - | chr1_4:67149468-67149487 | Msa0179570:CDS | 20.0% |
| !! | TATCTGTGTTTGAATAAATT+AGG | - | chr1_4:67149578-67149597 | Msa0179570:five_prime_UTR | 20.0% |
| ! | AGATATCTTAAACTTGACAT+TGG | + | chr1_4:67145683-67145702 | None:intergenic | 25.0% |
| !! | TTTAAGATATCTCTTCAGTA+AGG | - | chr1_4:67145691-67145710 | Msa0179570:three_prime_UTR | 25.0% |
| ! | TTAAGATATCTCTTCAGTAA+GGG | - | chr1_4:67145692-67145711 | Msa0179570:three_prime_UTR | 25.0% |
| !!! | GGTTTACAAAGTATTTTGTT+GGG | + | chr1_4:67145817-67145836 | None:intergenic | 25.0% |
| ! | GAAATAAGTTGTACAGATTA+TGG | + | chr1_4:67145920-67145939 | None:intergenic | 25.0% |
| !!! | ACAAAAGTGCATGTTTTTAA+CGG | + | chr1_4:67146177-67146196 | None:intergenic | 25.0% |
| !!! | ATGCACTTTTGTAATTTGTA+CGG | - | chr1_4:67146185-67146204 | Msa0179570:intron | 25.0% |
| !! | AGAAAATTAGCACTGAAATT+TGG | + | chr1_4:67146879-67146898 | None:intergenic | 25.0% |
| !!! | TTTTAGGTTCAAATTTTAGG+AGG | + | chr1_4:67147183-67147202 | None:intergenic | 25.0% |
| !!! | AGCTTTTAGGTTCAAATTTT+AGG | + | chr1_4:67147186-67147205 | None:intergenic | 25.0% |
| ! | CCAAAACAATTCGAAAATAA+AGG | + | chr1_4:67147346-67147365 | None:intergenic | 25.0% |
| !!! | CCTTTATTTTCGAATTGTTT+TGG | - | chr1_4:67147343-67147362 | Msa0179570:intron | 25.0% |
| !!! | TTCGAATTGTTTTGGATTAA+TGG | - | chr1_4:67147351-67147370 | Msa0179570:intron | 25.0% |
| ! | TATATGACCCAAATAATAGT+AGG | + | chr1_4:67147393-67147412 | None:intergenic | 25.0% |
| !!! | TTTTATTTCCATAATCAGAC+GGG | + | chr1_4:67147732-67147751 | None:intergenic | 25.0% |
| !!! | TCTGGTAAATTTTTCTAGAA+GGG | + | chr1_4:67147899-67147918 | None:intergenic | 25.0% |
| !! | TTCTGGTAAATTTTTCTAGA+AGG | + | chr1_4:67147900-67147919 | None:intergenic | 25.0% |
| !! | CTCAACAAAAGTATAAAATC+CGG | - | chr1_4:67147947-67147966 | Msa0179570:intron | 25.0% |
| !! | TCAACAAAAGTATAAAATCC+GGG | - | chr1_4:67147948-67147967 | Msa0179570:intron | 25.0% |
| !!! | TAGAAAATAAAAGCACTAAC+AGG | - | chr1_4:67148047-67148066 | Msa0179570:intron | 25.0% |
| !!! | CTTTTTTTTTAGTCTTACTG+AGG | - | chr1_4:67148220-67148239 | Msa0179570:CDS | 25.0% |
| ! | GTAATTACAGCATATTAATG+TGG | + | chr1_4:67148413-67148432 | None:intergenic | 25.0% |
| ! | CAAGTTAACAAAACCAATAA+AGG | + | chr1_4:67148618-67148637 | None:intergenic | 25.0% |
| !!! | CTTTATTGGTTTTGTTAACT+TGG | - | chr1_4:67148616-67148635 | Msa0179570:CDS | 25.0% |
| ! | TTAAGGTGGTAAATTTATAC+TGG | - | chr1_4:67148762-67148781 | Msa0179570:CDS | 25.0% |
| !! | ACTACTTTCACATTTTGAAT+TGG | - | chr1_4:67148884-67148903 | Msa0179570:CDS | 25.0% |
| !! | CTACTTTCACATTTTGAATT+GGG | - | chr1_4:67148885-67148904 | Msa0179570:CDS | 25.0% |
| !!! | GGTTTTATAATTGCAAATGT+TGG | + | chr1_4:67149100-67149119 | None:intergenic | 25.0% |
| !!! | GATTAAAACAAAAGGCATTT+CGG | + | chr1_4:67149121-67149140 | None:intergenic | 25.0% |
| !!! | AAATGCCTTTTGTTTTAATC+AGG | - | chr1_4:67149121-67149140 | Msa0179570:intron | 25.0% |
| !! | CTTTTCCTGATTAAAACAAA+AGG | + | chr1_4:67149129-67149148 | None:intergenic | 25.0% |
| !!! | CTTTTGTTTTAATCAGGAAA+AGG | - | chr1_4:67149127-67149146 | Msa0179570:intron | 25.0% |
| !! | TTTTAATCAGGAAAAGGTTA+TGG | - | chr1_4:67149133-67149152 | Msa0179570:intron | 25.0% |
| !! | CATGTACATATGTTACTTAT+TGG | + | chr1_4:67149182-67149201 | None:intergenic | 25.0% |
| ! | CAATAAGTAACATATGTACA+TGG | - | chr1_4:67149180-67149199 | Msa0179570:intron | 25.0% |
| ! | ACATATGTTTGCTTAATTAG+AGG | + | chr1_4:67149467-67149486 | None:intergenic | 25.0% |
| ! | CTAATTAAGCAAACATATGT+TGG | - | chr1_4:67149467-67149486 | Msa0179570:CDS | 25.0% |
| ! | TTAGGATAAAACAGAATTTG+TGG | - | chr1_4:67149596-67149615 | Msa0179570:five_prime_UTR | 25.0% |
| !! | TTGAAAGTATCTAAAGAACC+TGG | + | chr1_4:67145773-67145792 | None:intergenic | 30.0% |
| !! | GGGTTTACAAAGTATTTTGT+TGG | + | chr1_4:67145818-67145837 | None:intergenic | 30.0% |
| ACTCAAATTAACCAGAGAAA+GGG | + | chr1_4:67145838-67145857 | None:intergenic | 30.0% | |
| AACTCAAATTAACCAGAGAA+AGG | + | chr1_4:67145839-67145858 | None:intergenic | 30.0% | |
| ! | AATTTGTACGGACTAAAAAG+AGG | - | chr1_4:67146197-67146216 | Msa0179570:intron | 30.0% |
| TCAGATTTAAATATGAGCTG+AGG | + | chr1_4:67146427-67146446 | None:intergenic | 30.0% | |
| ATCATTACAACTCTTGTTAC+TGG | - | chr1_4:67146580-67146599 | Msa0179570:intron | 30.0% | |
| AACTCTTGTTACTGGTAATT+TGG | - | chr1_4:67146588-67146607 | Msa0179570:intron | 30.0% | |
| AGCTGCAAAATATTCAGATT+GGG | - | chr1_4:67146762-67146781 | Msa0179570:intron | 30.0% | |
| CAAAATATTCAGATTGGGTA+AGG | - | chr1_4:67146767-67146786 | Msa0179570:intron | 30.0% | |
| AGTTGCATCTAGTAATTTGA+AGG | + | chr1_4:67146924-67146943 | None:intergenic | 30.0% | |
| AATGGTGATCAAATACTTGA+AGG | - | chr1_4:67147021-67147040 | Msa0179570:intron | 30.0% | |
| !! | CATGATTTGTAACAGCTTTT+AGG | + | chr1_4:67147199-67147218 | None:intergenic | 30.0% |
| CTAAAAGCTGTTACAAATCA+TGG | - | chr1_4:67147197-67147216 | Msa0179570:intron | 30.0% | |
| ACTGTCAGAATATTAAAGCA+TGG | + | chr1_4:67147232-67147251 | None:intergenic | 30.0% | |
| TAATTGCATTTCAAGACCAT+TGG | - | chr1_4:67147444-67147463 | Msa0179570:CDS | 30.0% | |
| ! | ATCGTTTCCTGTTTCATTTT+AGG | - | chr1_4:67147681-67147700 | Msa0179570:intron | 30.0% |
| !!! | TCCTGTTTCATTTTAGGATT+CGG | - | chr1_4:67147687-67147706 | Msa0179570:intron | 30.0% |
| TTTATTTCCATAATCAGACG+GGG | + | chr1_4:67147731-67147750 | None:intergenic | 30.0% | |
| !! | CTGGTAAATTTTTCTAGAAG+GGG | + | chr1_4:67147898-67147917 | None:intergenic | 30.0% |
| !!! | ATTTCATGTTTTGACCATGA+TGG | + | chr1_4:67148153-67148172 | None:intergenic | 30.0% |
| ATGGTCAAAACATGAAATCT+GGG | - | chr1_4:67148155-67148174 | Msa0179570:CDS | 30.0% | |
| AACTTTGCAAATTGTTCGTT+TGG | - | chr1_4:67148252-67148271 | Msa0179570:intron | 30.0% | |
| TTTAAATGTGTCGAAATCCT+CGG | + | chr1_4:67148344-67148363 | None:intergenic | 30.0% | |
| TACTGACCTATTTACAAGTT+TGG | - | chr1_4:67148490-67148509 | Msa0179570:CDS | 30.0% | |
| TATGTCAGTTGGAAACATTA+AGG | - | chr1_4:67148532-67148551 | Msa0179570:CDS | 30.0% | |
| ATGGACCAAAAAGGAATTTA+AGG | - | chr1_4:67148745-67148764 | Msa0179570:CDS | 30.0% | |
| ! | TACCACCTTAAATTCCTTTT+TGG | + | chr1_4:67148753-67148772 | None:intergenic | 30.0% |
| TTCTCAATTTGAGTAAATGC+AGG | - | chr1_4:67148817-67148836 | Msa0179570:CDS | 30.0% | |
| ATCTACTCATTGAGAAACTA+TGG | + | chr1_4:67149295-67149314 | None:intergenic | 30.0% | |
| ! | ATGATGGAAATGTAATCACT+TGG | - | chr1_4:67149313-67149332 | Msa0179570:intron | 30.0% |
| AAGTTGTTCAGACATGATAT+CGG | + | chr1_4:67149354-67149373 | None:intergenic | 30.0% | |
| AACAACTTAACGAATAAGTC+AGG | - | chr1_4:67149366-67149385 | Msa0179570:intron | 30.0% | |
| AGACACACAATCATAAATCT+AGG | + | chr1_4:67149539-67149558 | None:intergenic | 30.0% | |
| TACTTTGTAAACCCTTTCTC+TGG | - | chr1_4:67145824-67145843 | Msa0179570:three_prime_UTR | 35.0% | |
| !! | AAGTTATGAGTCGTTTTCGT+AGG | + | chr1_4:67145962-67145981 | None:intergenic | 35.0% |
| CTCTGCTTGAATAAACAACT+TGG | + | chr1_4:67146081-67146100 | None:intergenic | 35.0% | |
| GAAACTGAAAAGTGGTTACA+GGG | + | chr1_4:67146153-67146172 | None:intergenic | 35.0% | |
| AGAAACTGAAAAGTGGTTAC+AGG | + | chr1_4:67146154-67146173 | None:intergenic | 35.0% | |
| TTAACGGAGAAACTGAAAAG+TGG | + | chr1_4:67146161-67146180 | None:intergenic | 35.0% | |
| AGGTTCAGAGACTAAACAAA+AGG | - | chr1_4:67146217-67146236 | Msa0179570:intron | 35.0% | |
| ! | TGCTTCATGCTTGATGTTTT+GGG | - | chr1_4:67146348-67146367 | Msa0179570:intron | 35.0% |
| ! | GACACTTGTTAACGATTCAT+TGG | - | chr1_4:67146507-67146526 | Msa0179570:CDS | 35.0% |
| TGTTAACGATTCATTGGAGA+AGG | - | chr1_4:67146513-67146532 | Msa0179570:CDS | 35.0% | |
| TCTTGTTACTGGTAATTTGG+AGG | - | chr1_4:67146591-67146610 | Msa0179570:intron | 35.0% | |
| ACTTATGTTCCTCCTCAATT+TGG | - | chr1_4:67146685-67146704 | Msa0179570:intron | 35.0% | |
| TTCCTCCTCAATTTGGTATT+CGG | - | chr1_4:67146692-67146711 | Msa0179570:intron | 35.0% | |
| CAGCTGCAAAATATTCAGAT+TGG | - | chr1_4:67146761-67146780 | Msa0179570:intron | 35.0% | |
| GTCAAAGGCAGTAACTTATA+TGG | + | chr1_4:67146852-67146871 | None:intergenic | 35.0% | |
| CTGAAATTTGGTATCGTCAA+AGG | + | chr1_4:67146867-67146886 | None:intergenic | 35.0% | |
| ! | TTTTTCTGCAATGCAGGATT+AGG | - | chr1_4:67146944-67146963 | Msa0179570:intron | 35.0% |
| GAACTGTTGCTGTCTTATAA+TGG | - | chr1_4:67147003-67147022 | Msa0179570:intron | 35.0% | |
| !!! | TTTTTTCGTTGTTATCCGCA+AGG | - | chr1_4:67147056-67147075 | Msa0179570:CDS | 35.0% |
| CACATATGGTTACTAACCAA+AGG | + | chr1_4:67147153-67147172 | None:intergenic | 35.0% | |
| TAGGAGGAAATACACACATA+TGG | + | chr1_4:67147167-67147186 | None:intergenic | 35.0% | |
| AAGCTGTTACAAATCATGGT+TGG | - | chr1_4:67147201-67147220 | Msa0179570:intron | 35.0% | |
| AGCTGTTACAAATCATGGTT+GGG | - | chr1_4:67147202-67147221 | Msa0179570:intron | 35.0% | |
| AAGTTAGCTGGAATAGTTGT+AGG | + | chr1_4:67147281-67147300 | None:intergenic | 35.0% | |
| ACAACTATTCCAGCTAACTT+TGG | - | chr1_4:67147281-67147300 | Msa0179570:intron | 35.0% | |
| TAATTTCCACCAAAGTTAGC+TGG | + | chr1_4:67147293-67147312 | None:intergenic | 35.0% | |
| TGAAATAAGCTTATGCGTCA+TGG | - | chr1_4:67147606-67147625 | Msa0179570:intron | 35.0% | |
| ACCGAATCCTAAAATGAAAC+AGG | + | chr1_4:67147691-67147710 | None:intergenic | 35.0% | |
| AACCATACTCAAGTACTAGT+TGG | + | chr1_4:67147813-67147832 | None:intergenic | 35.0% | |
| ACTAGTACTTGAGTATGGTT+TGG | - | chr1_4:67147813-67147832 | Msa0179570:intron | 35.0% | |
| TTATCTCATTTGATGGAGAG+TGG | - | chr1_4:67147973-67147992 | Msa0179570:intron | 35.0% | |
| !! | AGGTTATTTCTCATGTGACT+TGG | - | chr1_4:67148067-67148086 | Msa0179570:intron | 35.0% |
| CATGGTCAAAACATGAAATC+TGG | - | chr1_4:67148154-67148173 | Msa0179570:CDS | 35.0% | |
| TACTGCTAGATCGAAATCAA+TGG | - | chr1_4:67148318-67148337 | Msa0179570:intron | 35.0% | |
| TACAAAATAGTATTCTCGCG+AGG | + | chr1_4:67148440-67148459 | None:intergenic | 35.0% | |
| CAATGACATTGTATGTCAGT+TGG | - | chr1_4:67148521-67148540 | Msa0179570:CDS | 35.0% | |
| GATTTCAGACTCTCCTTTAT+TGG | - | chr1_4:67148602-67148621 | Msa0179570:CDS | 35.0% | |
| !!! | ATCCTTCCAGGTTTTAGAAT+GGG | + | chr1_4:67148720-67148739 | None:intergenic | 35.0% |
| !!! | TATCCTTCCAGGTTTTAGAA+TGG | + | chr1_4:67148721-67148740 | None:intergenic | 35.0% |
| AAACCTGGAAGGATATATCA+TGG | - | chr1_4:67148726-67148745 | Msa0179570:CDS | 35.0% | |
| GGATATATCATGGACCAAAA+AGG | - | chr1_4:67148736-67148755 | Msa0179570:CDS | 35.0% | |
| GACCAAAAAGGAATTTAAGG+TGG | - | chr1_4:67148748-67148767 | Msa0179570:CDS | 35.0% | |
| CAATTTGAGTAAATGCAGGA+TGG | - | chr1_4:67148821-67148840 | Msa0179570:CDS | 35.0% | |
| ATTAAAGTTGTGATCATCCC+TGG | + | chr1_4:67148848-67148867 | None:intergenic | 35.0% | |
| GATGATCACAACTTTAATCC+AGG | - | chr1_4:67148850-67148869 | Msa0179570:CDS | 35.0% | |
| ! | TCACATTTTGAATTGGGACT+TGG | - | chr1_4:67148891-67148910 | Msa0179570:CDS | 35.0% |
| ! | CACATTTTGAATTGGGACTT+GGG | - | chr1_4:67148892-67148911 | Msa0179570:CDS | 35.0% |
| GTAAATGGACAGATGCATAA+TGG | + | chr1_4:67148950-67148969 | None:intergenic | 35.0% | |
| TATGCATCTGTCCATTTACA+CGG | - | chr1_4:67148951-67148970 | Msa0179570:intron | 35.0% | |
| GTTTCTCAATGAGTAGATGA+TGG | - | chr1_4:67149297-67149316 | Msa0179570:intron | 35.0% | |
| ATGGACATGTGACATGTCAT+AGG | + | chr1_4:67145901-67145920 | None:intergenic | 40.0% | |
| AGGCTATCTTAGAGAGCTTA+CGG | + | chr1_4:67145942-67145961 | None:intergenic | 40.0% | |
| ! | CAAAAGGTGTAAACTCTACG+AGG | - | chr1_4:67146233-67146252 | Msa0179570:intron | 40.0% |
| ! | GTGCTTCATGCTTGATGTTT+TGG | - | chr1_4:67146347-67146366 | Msa0179570:intron | 40.0% |
| !!! | CATGCTTGATGTTTTGGGAA+AGG | - | chr1_4:67146353-67146372 | Msa0179570:intron | 40.0% |
| AGTTTCCAAGCTGGCAAATT+TGG | + | chr1_4:67146478-67146497 | None:intergenic | 40.0% | |
| !!! | ACCCTCTTTTTCAGTGCAAA+GGG | + | chr1_4:67146544-67146563 | None:intergenic | 40.0% |
| !!! | AACCCTCTTTTTCAGTGCAA+AGG | + | chr1_4:67146545-67146564 | None:intergenic | 40.0% |
| ! | GAAAAAGAGGGTTGATTCTG+AGG | - | chr1_4:67146552-67146571 | Msa0179570:CDS | 40.0% |
| TGCATGTGAGACTATATCTG+AGG | - | chr1_4:67146621-67146640 | Msa0179570:intron | 40.0% | |
| TCCTCCTCAATTTGGTATTC+GGG | - | chr1_4:67146693-67146712 | Msa0179570:intron | 40.0% | |
| TTTCCCCGAATACCAAATTG+AGG | + | chr1_4:67146700-67146719 | None:intergenic | 40.0% | |
| CAATTTGGTATTCGGGGAAA+TGG | - | chr1_4:67146700-67146719 | Msa0179570:intron | 40.0% | |
| AATGGTGAACATTTGGCTGT+TGG | - | chr1_4:67146718-67146737 | Msa0179570:intron | 40.0% | |
| !!! | GCAACTTTTTTCTGCAATGC+AGG | - | chr1_4:67146938-67146957 | Msa0179570:intron | 40.0% |
| TGCTAGAATTCTGTGTCCTT+TGG | - | chr1_4:67147134-67147153 | Msa0179570:intron | 40.0% | |
| TGTTACAAATCATGGTTGGG+TGG | - | chr1_4:67147205-67147224 | Msa0179570:intron | 40.0% | |
| ACTATTCCAGCTAACTTTGG+TGG | - | chr1_4:67147284-67147303 | Msa0179570:intron | 40.0% | |
| TACATTCTCAAGAGTTCACG+AGG | - | chr1_4:67147525-67147544 | Msa0179570:intron | 40.0% | |
| ACTAGTTGGCGTATTATTCC+TGG | + | chr1_4:67147799-67147818 | None:intergenic | 40.0% | |
| CCATCAAATGAGATAAAGCC+CGG | + | chr1_4:67147969-67147988 | None:intergenic | 40.0% | |
| GTCAAAACATGAAATCTGGG+AGG | - | chr1_4:67148158-67148177 | Msa0179570:CDS | 40.0% | |
| TGCATTCACTCACTACTATG+TGG | - | chr1_4:67148366-67148385 | Msa0179570:intron | 40.0% | |
| ATTCACTCACTACTATGTGG+TGG | - | chr1_4:67148369-67148388 | Msa0179570:intron | 40.0% | |
| ! | GAGAGTCTGAAATCTAGTGT+AGG | + | chr1_4:67148596-67148615 | None:intergenic | 40.0% |
| ATGTCATTGCAGATAGCTTG+AGG | - | chr1_4:67148645-67148664 | Msa0179570:CDS | 40.0% | |
| GCAACATGCAGATAGTATTC+AGG | - | chr1_4:67148673-67148692 | Msa0179570:CDS | 40.0% | |
| ! | GTATTCAGGTTCCAACAGAA+TGG | - | chr1_4:67148687-67148706 | Msa0179570:CDS | 40.0% |
| !! | AATCAGCCCATTCTAAAACC+TGG | - | chr1_4:67148711-67148730 | Msa0179570:CDS | 40.0% |
| ! | TTTTGAATTGGGACTTGGGA+TGG | - | chr1_4:67148896-67148915 | Msa0179570:intron | 40.0% |
| AAGACCACAAACCGTGTAAA+TGG | + | chr1_4:67148965-67148984 | None:intergenic | 40.0% | |
| GGTTATGGAGAAAGCAACTT+TGG | - | chr1_4:67149148-67149167 | Msa0179570:intron | 40.0% | |
| ATGGAGAAAGCAACTTTGGA+AGG | - | chr1_4:67149152-67149171 | Msa0179570:intron | 40.0% | |
| TGAAGATCCTAAACCTTTGC+TGG | - | chr1_4:67149203-67149222 | Msa0179570:intron | 40.0% | |
| GAAGATCCTAAACCTTTGCT+GGG | - | chr1_4:67149204-67149223 | Msa0179570:intron | 40.0% | |
| TTTCATCCCAGCAAAGGTTT+AGG | + | chr1_4:67149213-67149232 | None:intergenic | 40.0% | |
| AAACCTTTGCTGGGATGAAA+TGG | - | chr1_4:67149213-67149232 | Msa0179570:intron | 40.0% | |
| AATGTATACGCCAACTGAAG+CGG | + | chr1_4:67149265-67149284 | None:intergenic | 40.0% | |
| CAGACATGATATCGGTAAAC+TGG | + | chr1_4:67149346-67149365 | None:intergenic | 40.0% | |
| ! | ATGTTGCTAACATGGCCTTT+TGG | + | chr1_4:67149443-67149462 | None:intergenic | 40.0% |
| ! | TTAGAGGCATGTTGCTAACA+TGG | + | chr1_4:67149451-67149470 | None:intergenic | 40.0% |
| GGCACAAAAAACATTGATGC+TGG | - | chr1_4:67149489-67149508 | Msa0179570:CDS | 40.0% | |
| CAGTTACAGACCAATCAGAT+CGG | + | chr1_4:67149516-67149535 | None:intergenic | 40.0% | |
| GTCTGTAACAGTGCTATAAC+TGG | - | chr1_4:67149555-67149574 | Msa0179570:five_prime_UTR | 40.0% | |
| ! | GAACATCTGAGGTGTGTGAA+AGG | + | chr1_4:67145721-67145740 | None:intergenic | 45.0% |
| ! | TCAAGAAAGACTTTTGCCGC+AGG | + | chr1_4:67145743-67145762 | None:intergenic | 45.0% |
| GTCTTTCTTGAAGCTCATCC+AGG | - | chr1_4:67145752-67145771 | Msa0179570:three_prime_UTR | 45.0% | |
| ! | GCTGGCAAATTTGGTGACAA+TGG | + | chr1_4:67146469-67146488 | None:intergenic | 45.0% |
| TGTCACCAAATTTGCCAGCT+TGG | - | chr1_4:67146470-67146489 | Msa0179570:CDS | 45.0% | |
| TGCAATGCAAGTTTCCAAGC+TGG | + | chr1_4:67146487-67146506 | None:intergenic | 45.0% | |
| TGCCCTTTGCACTGAAAAAG+AGG | - | chr1_4:67146539-67146558 | Msa0179570:CDS | 45.0% | |
| GCCCTTTGCACTGAAAAAGA+GGG | - | chr1_4:67146540-67146559 | Msa0179570:CDS | 45.0% | |
| CCTCCTCAATTTGGTATTCG+GGG | - | chr1_4:67146694-67146713 | Msa0179570:intron | 45.0% | |
| TCGGGGAAATGGTGAACATT+TGG | - | chr1_4:67146711-67146730 | Msa0179570:intron | 45.0% | |
| ATGCAGGATTAGGAAGACTC+TGG | - | chr1_4:67146954-67146973 | Msa0179570:intron | 45.0% | |
| AACAGTTCTGTCACTGATGG+AGG | + | chr1_4:67146991-67147010 | None:intergenic | 45.0% | |
| AGCAACAGTTCTGTCACTGA+TGG | + | chr1_4:67146994-67147013 | None:intergenic | 45.0% | |
| TTTCGTTGTTATCCGCAAGG+TGG | - | chr1_4:67147059-67147078 | Msa0179570:CDS | 45.0% | |
| TTCGTTGTTATCCGCAAGGT+GGG | - | chr1_4:67147060-67147079 | Msa0179570:CDS | 45.0% | |
| GATAGAATAAGCCCACCTTG+CGG | + | chr1_4:67147074-67147093 | None:intergenic | 45.0% | |
| ! | CAAGAGTTCACGAGGTATCT+TGG | - | chr1_4:67147533-67147552 | Msa0179570:intron | 45.0% |
| ! | TAGGATTCGGTTTCCGATGA+TGG | - | chr1_4:67147700-67147719 | Msa0179570:intron | 45.0% |
| ! | AGGATTCGGTTTCCGATGAT+GGG | - | chr1_4:67147701-67147720 | Msa0179570:intron | 45.0% |
| GGAAGAACACCATCACTGAT+AGG | + | chr1_4:67147778-67147797 | None:intergenic | 45.0% | |
| ! | ATCAGTGATGGTGTTCTTCC+AGG | - | chr1_4:67147778-67147797 | Msa0179570:intron | 45.0% |
| CGCCAACTAGTACTTGAGTA+TGG | - | chr1_4:67147808-67147827 | Msa0179570:intron | 45.0% | |
| ! | CCGGGCTTTATCTCATTTGA+TGG | - | chr1_4:67147966-67147985 | Msa0179570:intron | 45.0% |
| ! | GCATGATTTGCACTTGTGCA+GGG | - | chr1_4:67148089-67148108 | Msa0179570:intron | 45.0% |
| ATGGAGCAACTTCTCGACAT+GGG | + | chr1_4:67148134-67148153 | None:intergenic | 45.0% | |
| TAGATCGAAATCAATGGCCG+AGG | - | chr1_4:67148324-67148343 | Msa0179570:intron | 45.0% | |
| !! | AGCCCATTCTAAAACCTGGA+AGG | - | chr1_4:67148715-67148734 | Msa0179570:CDS | 45.0% |
| GGTCCATGATATATCCTTCC+AGG | + | chr1_4:67148732-67148751 | None:intergenic | 45.0% | |
| AGTAAATGCAGGATGGACCA+GGG | - | chr1_4:67148828-67148847 | Msa0179570:CDS | 45.0% | |
| CTGTCCATTTACACGGTTTG+TGG | - | chr1_4:67148958-67148977 | Msa0179570:intron | 45.0% | |
| TGTCCATTTCATCCCAGCAA+AGG | + | chr1_4:67149219-67149238 | None:intergenic | 45.0% | |
| ATGTATACGCCAACTGAAGC+GGG | + | chr1_4:67149264-67149283 | None:intergenic | 45.0% | |
| ! | TTGCTAACATGGCCTTTTGG+AGG | + | chr1_4:67149440-67149459 | None:intergenic | 45.0% |
| ACACACCTCAGATGTTCCTG+CGG | - | chr1_4:67145724-67145743 | Msa0179570:three_prime_UTR | 50.0% | |
| ! | TTTTGCCGCAGGAACATCTG+AGG | + | chr1_4:67145732-67145751 | None:intergenic | 50.0% |
| CCCCGAATACCAAATTGAGG+AGG | + | chr1_4:67146697-67146716 | None:intergenic | 50.0% | |
| GGTGAACATTTGGCTGTTGG+CGG | - | chr1_4:67146721-67146740 | Msa0179570:intron | 50.0% | |
| ATTTGGCTGTTGGCGGCTAT+GGG | - | chr1_4:67146728-67146747 | Msa0179570:intron | 50.0% | |
| CAGACAGCTCCTATCAGTGA+TGG | - | chr1_4:67147766-67147785 | Msa0179570:intron | 50.0% | |
| ! | GGCATGATTTGCACTTGTGC+AGG | - | chr1_4:67148088-67148107 | Msa0179570:intron | 50.0% |
| GATGGAGCAACTTCTCGACA+TGG | + | chr1_4:67148135-67148154 | None:intergenic | 50.0% | |
| GTCGAGAAGTTGCTCCATCA+TGG | - | chr1_4:67148136-67148155 | Msa0179570:intron | 50.0% | |
| TGGGCTGATTGCCATTCTGT+TGG | + | chr1_4:67148701-67148720 | None:intergenic | 50.0% | |
| GAGTAAATGCAGGATGGACC+AGG | - | chr1_4:67148827-67148846 | Msa0179570:CDS | 50.0% | |
| TGTATACGCCAACTGAAGCG+GGG | + | chr1_4:67149263-67149282 | None:intergenic | 50.0% | |
| CTTCTTAGGCCACCTCCAAA+AGG | - | chr1_4:67149425-67149444 | Msa0179570:intron | 50.0% | |
| !! | CTAACATGGCCTTTTGGAGG+TGG | + | chr1_4:67149437-67149456 | None:intergenic | 50.0% |
| TGATGCTGGTCCGATCTGAT+TGG | - | chr1_4:67149503-67149522 | Msa0179570:CDS | 50.0% | |
| CATTTGGCTGTTGGCGGCTA+TGG | - | chr1_4:67146727-67146746 | Msa0179570:intron | 55.0% | |
| AGACGGGGCTTTCCCATCAT+CGG | + | chr1_4:67147716-67147735 | None:intergenic | 55.0% | |
| GGGAAAGCCCCGTCTGATTA+TGG | - | chr1_4:67147721-67147740 | Msa0179570:intron | 55.0% | |
| AGAAGGGGCTCGTTCTTCTG+TGG | + | chr1_4:67147883-67147902 | None:intergenic | 55.0% | |
| TGCACTTGTGCAGGGTATGC+AGG | - | chr1_4:67148097-67148116 | Msa0179570:intron | 55.0% | |
| TGCAGGGTATGCAGGAGTGA+AGG | - | chr1_4:67148105-67148124 | Msa0179570:intron | 55.0% | |
| TGAAGCGGGGGAGAAAGAGA+AGG | + | chr1_4:67149250-67149269 | None:intergenic | 55.0% | |
| TCTTTCTCCCCCGCTTCAGT+TGG | - | chr1_4:67149252-67149271 | Msa0179570:intron | 55.0% | |
| GTATACGCCAACTGAAGCGG+GGG | + | chr1_4:67149262-67149281 | None:intergenic | 55.0% | |
| TGGCTGTTGGCGGCTATGGG+AGG | - | chr1_4:67146731-67146750 | Msa0179570:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 67145599 | 67149629 | 67145599 | ID=Msa0179570;Name=Msa0179570 |
| chr1_4 | mRNA | 67145599 | 67149629 | 67145599 | ID=Msa0179570-mRNA-1;Parent=Msa0179570;Name=Msa0179570-mRNA-1;_AED=0.17;_eAED=0.17;_QI=84|1|1|1|1|1|8|424|364 |
| chr1_4 | exon | 67145599 | 67146085 | 67145599 | ID=Msa0179570-mRNA-1:exon:22082;Parent=Msa0179570-mRNA-1 |
| chr1_4 | exon | 67146357 | 67146389 | 67146357 | ID=Msa0179570-mRNA-1:exon:22081;Parent=Msa0179570-mRNA-1 |
| chr1_4 | exon | 67146462 | 67146571 | 67146462 | ID=Msa0179570-mRNA-1:exon:22080;Parent=Msa0179570-mRNA-1 |
| chr1_4 | exon | 67147033 | 67147118 | 67147033 | ID=Msa0179570-mRNA-1:exon:22079;Parent=Msa0179570-mRNA-1 |
| chr1_4 | exon | 67147404 | 67147525 | 67147404 | ID=Msa0179570-mRNA-1:exon:22078;Parent=Msa0179570-mRNA-1 |
| chr1_4 | exon | 67148151 | 67148268 | 67148151 | ID=Msa0179570-mRNA-1:exon:22077;Parent=Msa0179570-mRNA-1 |
| chr1_4 | exon | 67148440 | 67148911 | 67148440 | ID=Msa0179570-mRNA-1:exon:22076;Parent=Msa0179570-mRNA-1 |
| chr1_4 | exon | 67149455 | 67149629 | 67149455 | ID=Msa0179570-mRNA-1:exon:22075;Parent=Msa0179570-mRNA-1 |
| chr1_4 | five_prime_UTR | 67149546 | 67149629 | 67149546 | ID=Msa0179570-mRNA-1:five_prime_utr;Parent=Msa0179570-mRNA-1 |
| chr1_4 | CDS | 67149455 | 67149545 | 67149455 | ID=Msa0179570-mRNA-1:cds;Parent=Msa0179570-mRNA-1 |
| chr1_4 | CDS | 67148440 | 67148911 | 67148440 | ID=Msa0179570-mRNA-1:cds;Parent=Msa0179570-mRNA-1 |
| chr1_4 | CDS | 67148151 | 67148268 | 67148151 | ID=Msa0179570-mRNA-1:cds;Parent=Msa0179570-mRNA-1 |
| chr1_4 | CDS | 67147404 | 67147525 | 67147404 | ID=Msa0179570-mRNA-1:cds;Parent=Msa0179570-mRNA-1 |
| chr1_4 | CDS | 67147033 | 67147118 | 67147033 | ID=Msa0179570-mRNA-1:cds;Parent=Msa0179570-mRNA-1 |
| chr1_4 | CDS | 67146462 | 67146571 | 67146462 | ID=Msa0179570-mRNA-1:cds;Parent=Msa0179570-mRNA-1 |
| chr1_4 | CDS | 67146357 | 67146389 | 67146357 | ID=Msa0179570-mRNA-1:cds;Parent=Msa0179570-mRNA-1 |
| chr1_4 | CDS | 67146023 | 67146085 | 67146023 | ID=Msa0179570-mRNA-1:cds;Parent=Msa0179570-mRNA-1 |
| chr1_4 | three_prime_UTR | 67145599 | 67146022 | 67145599 | ID=Msa0179570-mRNA-1:three_prime_utr;Parent=Msa0179570-mRNA-1 |
| Gene Sequence |
| Protein sequence |
