AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0299130


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0299130 MtrunA17_Chr2g0323371 99.563 229 1 0 1 229 1 229 7.70e-169 464
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0299130 AT4G03280.1 75.000 232 52 4 1 229 1 229 1.09e-108 312
Msa0299130 AT4G03280.2 78.365 208 41 3 25 229 4 210 1.26e-102 296

Find 99 sgRNAs with CRISPR-Local

Find 178 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AACAGAAATGTTTGAATTTC+AGG 0.103896 2_3:-53623646 None:intergenic
TTCTTCTCAGCTTGATTAAA+TGG 0.193267 2_3:-53622803 None:intergenic
ACCTTGAATCTTCTTCTTCT+TGG 0.209001 2_3:+53621573 Msa0299130:CDS
GCTGGAATGCTTGTTCCTTA+TGG 0.229044 2_3:+53621615 Msa0299130:CDS
CCTTTCAAAACCAACTTATA+AGG 0.278531 2_3:-53623854 None:intergenic
TACTCTTACACAAGGATTAA+AGG 0.280573 2_3:+53622482 Msa0299130:CDS
CCAATCATCTGAGTTCTTGT+TGG 0.316579 2_3:-53621471 None:intergenic
TAATCTAAATTTGAGGTTGA+TGG 0.337574 2_3:+53621106 None:intergenic
GGAATTTCATGTCCTTCAAT+AGG 0.351220 2_3:+53621435 Msa0299130:CDS
GATACCTGAGAAGGGGTTGC+AGG 0.393811 2_3:-53621310 None:intergenic
AATAATAAGATGATTATGTT+TGG 0.402981 2_3:-53621219 None:intergenic
GCTCTTTCACTTCCTACTGC+TGG 0.406855 2_3:+53621597 Msa0299130:CDS
TGTGAGAGGACCTGCTCCTT+TGG 0.407122 2_3:+53622874 Msa0299130:CDS
ATGGTTGATGAGGAAGATTT+TGG 0.420808 2_3:-53621268 None:intergenic
ATCTCCTGCAACCCCTTCTC+AGG 0.423342 2_3:+53621306 Msa0299130:CDS
GGATCCTTCCTTGTTCCACC+AGG 0.427870 2_3:+53621636 Msa0299130:CDS
GGAAGGTTGTGTTTGTTCCA+TGG 0.434059 2_3:+53623538 Msa0299130:CDS
GTTGAAACAGATTTCAGAAC+AGG 0.439951 2_3:+53623561 Msa0299130:CDS
TGTCAATTGAAGCTGGTATA+AGG 0.450070 2_3:+53623712 Msa0299130:three_prime_UTR
GTCTCTCTCTTACTCATGTC+AGG 0.452312 2_3:-53621552 None:intergenic
GTCCTCTCACAACTCTTCCT+TGG 0.456035 2_3:-53622862 None:intergenic
CTGAAATCTGTTTCAACCCA+TGG 0.465352 2_3:-53623555 None:intergenic
ACCAAGAAGAAGAAGATTCA+AGG 0.470226 2_3:-53621574 None:intergenic
AGCATCACTTGCCAGGCTAC+AGG 0.471775 2_3:+53621510 Msa0299130:CDS
GAAGCTGGTATAAGGTGAAA+AGG 0.478867 2_3:+53623720 Msa0299130:three_prime_UTR
TCAGATGATTGGTAAAGGTA+AGG 0.479300 2_3:+53621482 Msa0299130:CDS
GTGATTGGCTAAAGAATTTG+TGG 0.483008 2_3:+53621131 Msa0299130:five_prime_UTR
TTGAGGTTGATGGTTGTGAT+TGG 0.486493 2_3:+53621116 Msa0299130:five_prime_UTR
AAGAATTTGTGGCACCTACA+TGG 0.488848 2_3:+53621142 Msa0299130:five_prime_UTR
CCAACAAGAACTCAGATGAT+TGG 0.490944 2_3:+53621471 Msa0299130:CDS
CACCACAATTGTCATGGATA+AGG 0.491093 2_3:-53621173 None:intergenic
GGGGATGAGCATCACTTGCC+AGG 0.491362 2_3:+53621503 Msa0299130:CDS
CAGCAGGAATGCCTGTAGCC+TGG 0.498499 2_3:-53621521 None:intergenic
GAAGGTTGTGTTTGTTCCAT+GGG 0.499364 2_3:+53623539 Msa0299130:CDS
ATGCCGTATGCACTCACCTC+GGG 0.502003 2_3:+53622771 Msa0299130:CDS
AGGGGTTGCAGGAGATAGAG+TGG 0.502616 2_3:-53621299 None:intergenic
CAGATGATTGGTAAAGGTAA+GGG 0.503702 2_3:+53621483 Msa0299130:CDS
AGAAACGTAATCTAAATTTG+AGG 0.506943 2_3:+53621099 None:intergenic
AATTTGCTTACCAAAGGAGC+AGG 0.507050 2_3:-53622884 None:intergenic
TACAGCTCAGGTTCTTCCAC+TGG 0.509786 2_3:+53622381 Msa0299130:intron
TTAATCCTTGTGTAAGAGTA+CGG 0.511377 2_3:-53622479 None:intergenic
ACACCCGAGGTGAGTGCATA+CGG 0.514765 2_3:-53622774 None:intergenic
AAGTTCATCTGCCCCTGCCA+TGG 0.525212 2_3:+53622824 Msa0299130:CDS
TTGTGTAAGAGTACGGTCAC+CGG 0.527077 2_3:-53622472 None:intergenic
CGCCTTATCCATGACAATTG+TGG 0.535744 2_3:+53621171 Msa0299130:five_prime_UTR
TTCACAAGTAGTCCTATTGA+AGG 0.537717 2_3:-53621447 None:intergenic
TTGGTTGGCTTGAGAATGAA+AGG 0.542637 2_3:-53621249 None:intergenic
AATATGATGTCAATTGAAGC+TGG 0.545250 2_3:+53623705 Msa0299130:three_prime_UTR
AACGACCACCACAATTGTCA+TGG 0.547551 2_3:-53621179 None:intergenic
CACTGGTGGTACTGTAGCAA+AGG 0.547649 2_3:+53622398 Msa0299130:CDS
GATCCTTCCTTGTTCCACCA+GGG 0.557310 2_3:+53621637 Msa0299130:CDS
AGAACTCAGATGATTGGTAA+AGG 0.559749 2_3:+53621477 Msa0299130:CDS
TGTTGGACAGTCTCTTGCGT+TGG 0.563000 2_3:+53623488 Msa0299130:intron
ATGTCAGGTACACGATCAGC+AGG 0.563729 2_3:-53621537 None:intergenic
CAGCTATGTTCTGGAAAGAG+TGG 0.564531 2_3:+53621414 Msa0299130:intron
AGATAGAGTGGTGGAAGACA+TGG 0.564996 2_3:-53621287 None:intergenic
GTGATGTTAGTGTGGATGAT+GGG 0.565796 2_3:+53623517 Msa0299130:CDS
ATGATGTAGTTGCAGCGGAA+TGG 0.567006 2_3:+53622433 Msa0299130:CDS
AGCTCAGGTTCTTCCACTGG+TGG 0.569111 2_3:+53622384 Msa0299130:intron
TGTGATGTTAGTGTGGATGA+TGG 0.576215 2_3:+53623516 Msa0299130:CDS
TGTGTAAGAGTACGGTCACC+GGG 0.581349 2_3:-53622471 None:intergenic
ATTGTACTGAGATCCATGGC+AGG 0.582961 2_3:-53622837 None:intergenic
TGGCTAAAGTCACATGGACC+CGG 0.583593 2_3:+53622453 Msa0299130:CDS
TAACTAACCCTGGTGGAACA+AGG 0.585258 2_3:-53621644 None:intergenic
TCAGAACAGGTGATGCTCCA+TGG 0.585443 2_3:+53623574 Msa0299130:CDS
ACTGTAGCAAAGGATGCCGT+TGG 0.586270 2_3:+53622408 Msa0299130:CDS
GGAACAAGGAAGGATCCATA+AGG 0.588651 2_3:-53621630 None:intergenic
GGAACAAGCATTCCAGCAGT+AGG 0.593273 2_3:-53621609 None:intergenic
AGATGATTGGTAAAGGTAAG+GGG 0.595595 2_3:+53621484 Msa0299130:CDS
TGTTAGTGTGGATGATGGGA+AGG 0.602477 2_3:+53623521 Msa0299130:CDS
TTTGCAATGATACCTGAGAA+GGG 0.603738 2_3:-53621318 None:intergenic
GGTTGCAGGAGATAGAGTGG+TGG 0.603869 2_3:-53621296 None:intergenic
CTCTCTACCACAAGGTAGGT+AGG 0.607504 2_3:-53622719 None:intergenic
TTGCAATGATACCTGAGAAG+GGG 0.608443 2_3:-53621317 None:intergenic
TGCAACTACATCATTGCCAA+CGG 0.609037 2_3:-53622424 None:intergenic
TAACCCTGGTGGAACAAGGA+AGG 0.611521 2_3:-53621640 None:intergenic
AATGCCGTATGCACTCACCT+CGG 0.615718 2_3:+53622770 Msa0299130:CDS
GGTGGAAGACATGGTTGATG+AGG 0.617287 2_3:-53621278 None:intergenic
TTGTCATGGATAAGGCGCTA+AGG 0.619828 2_3:-53621165 None:intergenic
TTGTACTGAGATCCATGGCA+GGG 0.620918 2_3:-53622836 None:intergenic
GGTCATTGTACTGAGATCCA+TGG 0.630621 2_3:-53622841 None:intergenic
CTTATCCATGACAATTGTGG+TGG 0.640311 2_3:+53621174 Msa0299130:five_prime_UTR
TGTACTGAGATCCATGGCAG+GGG 0.644236 2_3:-53622835 None:intergenic
TGGCAATGATGTAGTTGCAG+CGG 0.645737 2_3:+53622428 Msa0299130:CDS
GACCAAGGAAGAGTTGTGAG+AGG 0.654345 2_3:+53622860 Msa0299130:CDS
GGCACATTGTGATGTTAGTG+TGG 0.657647 2_3:+53623509 Msa0299130:CDS
ATAAGGCGCTAAGGCCATGT+AGG 0.660590 2_3:-53621156 None:intergenic
CTTTGCTACAGTACCACCAG+TGG 0.660969 2_3:-53622397 None:intergenic
GCGGAATGGCTAAAGTCACA+TGG 0.661778 2_3:+53622447 Msa0299130:CDS
AATAAAATAACTAACCCTGG+TGG 0.665632 2_3:-53621651 None:intergenic
GTATAAGGTGAAAAGGAACA+TGG 0.666831 2_3:+53623727 Msa0299130:three_prime_UTR
GTCACTCTCTACCACAAGGT+AGG 0.679600 2_3:-53622723 None:intergenic
TTCTGTCACTCTCTACCACA+AGG 0.682304 2_3:-53622727 None:intergenic
GGGTGATCCTACCTACCTTG+TGG 0.688352 2_3:+53622712 Msa0299130:intron
GGATCTCAGTACAATGACCA+AGG 0.691042 2_3:+53622845 Msa0299130:CDS
TAAGAAGTCTAAGACCACCA+TGG 0.706343 2_3:-53623591 None:intergenic
GGTGACCGTACTCTTACACA+AGG 0.707111 2_3:+53622474 Msa0299130:CDS
GAACAGGTGATGCTCCATGG+TGG 0.711317 2_3:+53623577 Msa0299130:CDS
TAAATGGCACGACACACCCG+AGG 0.714387 2_3:-53622787 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTATTTATTTATTTATTTT+TGG + chr2_3:53621388-53621407 Msa0299130:intron 0.0%
!!! AACAAATTTATTTATTTTTC+TGG - chr2_3:53623371-53623390 None:intergenic 10.0%
!! AATAATAAGATGATTATGTT+TGG - chr2_3:53621222-53621241 None:intergenic 15.0%
!!! TTTTGTAATATCTAATCTAA+AGG + chr2_3:53621359-53621378 Msa0299130:intron 15.0%
!! TTTGTAATATCTAATCTAAA+GGG + chr2_3:53621360-53621379 Msa0299130:intron 15.0%
!!! TATTCTTTTCAATAATTGAA+TGG + chr2_3:53621696-53621715 Msa0299130:intron 15.0%
!!! ATTCTTTTCAATAATTGAAT+GGG + chr2_3:53621697-53621716 Msa0299130:intron 15.0%
!!! TTAAGGTTTTATTCTATATT+TGG + chr2_3:53621764-53621783 Msa0299130:intron 15.0%
!! ATTTATCAAAGTAGTTATTA+TGG - chr2_3:53622683-53622702 None:intergenic 15.0%
!! AATAAGATGAAAATAGTTTA+TGG - chr2_3:53623093-53623112 None:intergenic 15.0%
!! TAATTAAATTGTTTAGTGAT+AGG + chr2_3:53623235-53623254 Msa0299130:intron 15.0%
!!! AAATAAATTTGTTTAGTGAT+AGG + chr2_3:53623378-53623397 Msa0299130:intron 15.0%
!! ATAAATAAAATAACTAACCC+TGG - chr2_3:53621657-53621676 None:intergenic 20.0%
!! ATTAAATCAAGTGTATGTTT+AGG + chr2_3:53621845-53621864 Msa0299130:intron 20.0%
!!! TTAAAGCATCATAAAACTTT+TGG - chr2_3:53622313-53622332 None:intergenic 20.0%
!! ACTTTGATAAATTCAATAAC+AGG + chr2_3:53622691-53622710 Msa0299130:intron 20.0%
!! CTTTGATAAATTCAATAACA+GGG + chr2_3:53622692-53622711 Msa0299130:intron 20.0%
!!! CTTTTTATGATTTGTTTCTT+GGG + chr2_3:53622979-53622998 Msa0299130:intron 20.0%
!! ATAATGTTCATTAATATTCC+AGG - chr2_3:53623459-53623478 None:intergenic 20.0%
!! GGAATATTAATGAACATTAT+TGG + chr2_3:53623459-53623478 Msa0299130:intron 20.0%
!!! CATGTTTTTAGCTCAAATTA+AGG + chr2_3:53621747-53621766 Msa0299130:intron 25.0%
! TATGTAATGTTGTGTAGTAT+AGG + chr2_3:53621902-53621921 Msa0299130:intron 25.0%
! GCAACATATAATTAGCAATA+TGG - chr2_3:53622281-53622300 None:intergenic 25.0%
! CTTATGAAAACGACTTATAA+TGG - chr2_3:53622541-53622560 None:intergenic 25.0%
! TATCAAAGTAGTTATTATGG+TGG - chr2_3:53622680-53622699 None:intergenic 25.0%
!!! GCTTTTTATGATTTGTTTCT+TGG + chr2_3:53622978-53622997 Msa0299130:intron 25.0%
! TATATAAGTTCAATCCAAAC+AGG - chr2_3:53623005-53623024 None:intergenic 25.0%
! AGCTATAAATTAACCTCTTA+AGG - chr2_3:53623334-53623353 None:intergenic 25.0%
!!! AACATTATTGGTCTTTATGT+TGG + chr2_3:53623471-53623490 Msa0299130:intron 25.0%
! AACAGAAATGTTTGAATTTC+AGG - chr2_3:53623649-53623668 None:intergenic 25.0%
!! ACATTTTTCACCTTATAAGT+TGG + chr2_3:53623844-53623863 Msa0299130:three_prime_UTR 25.0%
AATAAAATAACTAACCCTGG+TGG - chr2_3:53621654-53621673 None:intergenic 30.0%
TTGTGTTTACATGTCAGTAT+CGG - chr2_3:53621962-53621981 None:intergenic 30.0%
! CAATTTGAAATCGTGTTCAA+GGG - chr2_3:53622069-53622088 None:intergenic 30.0%
! TCAATTTGAAATCGTGTTCA+AGG - chr2_3:53622070-53622089 None:intergenic 30.0%
ATAGTACAATCGAAAGATGA+TGG - chr2_3:53622159-53622178 None:intergenic 30.0%
GATACATGACTACATGAATT+AGG - chr2_3:53622190-53622209 None:intergenic 30.0%
! AGACTGGTTAATGATTTGAT+AGG - chr2_3:53622350-53622369 None:intergenic 30.0%
ATCAAATCATTAACCAGTCT+CGG + chr2_3:53622350-53622369 Msa0299130:intron 30.0%
TTAATCCTTGTGTAAGAGTA+CGG - chr2_3:53622482-53622501 None:intergenic 30.0%
TACTCTTACACAAGGATTAA+AGG + chr2_3:53622482-53622501 Msa0299130:CDS 30.0%
TAAGCACTTAAGATACTGTT+TGG + chr2_3:53622625-53622644 Msa0299130:intron 30.0%
TTCTTCTCAGCTTGATTAAA+TGG - chr2_3:53622806-53622825 None:intergenic 30.0%
!! TTTTCCAATTTGCTTACCAA+AGG - chr2_3:53622893-53622912 None:intergenic 30.0%
! AACTAGTTTGTCAAGTGATA+AGG - chr2_3:53622916-53622935 None:intergenic 30.0%
!! CTTATTTCTATATGCTCTCT+AGG + chr2_3:53623107-53623126 Msa0299130:intron 30.0%
GAGGTTAATTTATAGCTACT+AGG + chr2_3:53623337-53623356 Msa0299130:intron 30.0%
TTTAGTGATAGGATAGCTTA+GGG + chr2_3:53623389-53623408 Msa0299130:intron 30.0%
AATATGATGTCAATTGAAGC+TGG + chr2_3:53623705-53623724 Msa0299130:three_prime_UTR 30.0%
! GCAAAAAGTGCAAATTTATG+GGG - chr2_3:53623768-53623787 None:intergenic 30.0%
! CGCAAAAAGTGCAAATTTAT+GGG - chr2_3:53623769-53623788 None:intergenic 30.0%
! ACGCAAAAAGTGCAAATTTA+TGG - chr2_3:53623770-53623789 None:intergenic 30.0%
CCTTTCAAAACCAACTTATA+AGG - chr2_3:53623857-53623876 None:intergenic 30.0%
!!! CCTTATAAGTTGGTTTTGAA+AGG + chr2_3:53623854-53623873 Msa0299130:three_prime_UTR 30.0%
! GTGATTGGCTAAAGAATTTG+TGG + chr2_3:53621131-53621150 Msa0299130:five_prime_UTR 35.0%
!! TTGATGAGGAAGATTTTGGT+TGG - chr2_3:53621267-53621286 None:intergenic 35.0%
!!! ATGGTTGATGAGGAAGATTT+TGG - chr2_3:53621271-53621290 None:intergenic 35.0%
TTTGCAATGATACCTGAGAA+GGG - chr2_3:53621321-53621340 None:intergenic 35.0%
! TTTTGCAATGATACCTGAGA+AGG - chr2_3:53621322-53621341 None:intergenic 35.0%
!!! TTTTGGTTTCAGCTATGTTC+TGG + chr2_3:53621405-53621424 Msa0299130:intron 35.0%
GGAATTTCATGTCCTTCAAT+AGG + chr2_3:53621435-53621454 Msa0299130:CDS 35.0%
TTCACAAGTAGTCCTATTGA+AGG - chr2_3:53621450-53621469 None:intergenic 35.0%
AGAACTCAGATGATTGGTAA+AGG + chr2_3:53621477-53621496 Msa0299130:CDS 35.0%
TCAGATGATTGGTAAAGGTA+AGG + chr2_3:53621482-53621501 Msa0299130:CDS 35.0%
CAGATGATTGGTAAAGGTAA+GGG + chr2_3:53621483-53621502 Msa0299130:CDS 35.0%
AGATGATTGGTAAAGGTAAG+GGG + chr2_3:53621484-53621503 Msa0299130:CDS 35.0%
ACCTTGAATCTTCTTCTTCT+TGG + chr2_3:53621573-53621592 Msa0299130:CDS 35.0%
ACCAAGAAGAAGAAGATTCA+AGG - chr2_3:53621577-53621596 None:intergenic 35.0%
CATTATCTAGCAGACTAGTA+TGG - chr2_3:53622098-53622117 None:intergenic 35.0%
TCTTGTCTCATTAGCATCAA+AGG + chr2_3:53622222-53622241 Msa0299130:intron 35.0%
TTACATAGACACACTGTTTG+AGG + chr2_3:53623036-53623055 Msa0299130:intron 35.0%
GACGTTGCATAATATATGCA+GGG + chr2_3:53623286-53623305 Msa0299130:intron 35.0%
ACCTCTTAAGGTGAATAAGT+GGG - chr2_3:53623322-53623341 None:intergenic 35.0%
AACCTCTTAAGGTGAATAAG+TGG - chr2_3:53623323-53623342 None:intergenic 35.0%
GTTTAGTGATAGGATAGCTT+AGG + chr2_3:53623388-53623407 Msa0299130:intron 35.0%
GTTGAAACAGATTTCAGAAC+AGG + chr2_3:53623561-53623580 Msa0299130:CDS 35.0%
TGTCAATTGAAGCTGGTATA+AGG + chr2_3:53623712-53623731 Msa0299130:three_prime_UTR 35.0%
GTATAAGGTGAAAAGGAACA+TGG + chr2_3:53623727-53623746 Msa0299130:three_prime_UTR 35.0%
!! TTGAGGTTGATGGTTGTGAT+TGG + chr2_3:53621116-53621135 Msa0299130:five_prime_UTR 40.0%
AAGAATTTGTGGCACCTACA+TGG + chr2_3:53621142-53621161 Msa0299130:five_prime_UTR 40.0%
CACCACAATTGTCATGGATA+AGG - chr2_3:53621176-53621195 None:intergenic 40.0%
CTTATCCATGACAATTGTGG+TGG + chr2_3:53621174-53621193 Msa0299130:five_prime_UTR 40.0%
!! TTGGTTGGCTTGAGAATGAA+AGG - chr2_3:53621252-53621271 None:intergenic 40.0%
TTGCAATGATACCTGAGAAG+GGG - chr2_3:53621320-53621339 None:intergenic 40.0%
CCAATCATCTGAGTTCTTGT+TGG - chr2_3:53621474-53621493 None:intergenic 40.0%
CCAACAAGAACTCAGATGAT+TGG + chr2_3:53621471-53621490 Msa0299130:CDS 40.0%
CGACATAACTTCGATACATG+TGG - chr2_3:53622021-53622040 None:intergenic 40.0%
GACTACATGAATTAGGTGCA+AGG - chr2_3:53622183-53622202 None:intergenic 40.0%
! CTGTAATTGTTTTCCGAGAC+TGG - chr2_3:53622366-53622385 None:intergenic 40.0%
TCGGAAAACAATTACAGCTC+AGG + chr2_3:53622369-53622388 Msa0299130:intron 40.0%
TGCAACTACATCATTGCCAA+CGG - chr2_3:53622427-53622446 None:intergenic 40.0%
GCAAGTGTACAATTGCAAAC+TGG + chr2_3:53622504-53622523 Msa0299130:intron 40.0%
! ATTATGGTGGAAGCTTGAGA+AGG - chr2_3:53622667-53622686 None:intergenic 40.0%
! AATTTGCTTACCAAAGGAGC+AGG - chr2_3:53622887-53622906 None:intergenic 40.0%
TGCTCCTTTGGTAAGCAAAT+TGG + chr2_3:53622886-53622905 Msa0299130:intron 40.0%
! TGACAAACTAGTTTAGCTGC+AGG + chr2_3:53622923-53622942 Msa0299130:intron 40.0%
! ATTTGTTTCTTGGGCCTGTT+TGG + chr2_3:53622988-53623007 Msa0299130:intron 40.0%
CTAGGACAGCTTATAGCTTA+TGG + chr2_3:53623125-53623144 Msa0299130:intron 40.0%
GGACGTTGCATAATATATGC+AGG + chr2_3:53623285-53623304 Msa0299130:intron 40.0%
CCTCTTAAGGTGAATAAGTG+GGG - chr2_3:53623321-53623340 None:intergenic 40.0%
ATGCATCATGTAGTTGTTCC+TGG + chr2_3:53623438-53623457 Msa0299130:intron 40.0%
TGTGATGTTAGTGTGGATGA+TGG + chr2_3:53623516-53623535 Msa0299130:CDS 40.0%
GTGATGTTAGTGTGGATGAT+GGG + chr2_3:53623517-53623536 Msa0299130:CDS 40.0%
GAAGGTTGTGTTTGTTCCAT+GGG + chr2_3:53623539-53623558 Msa0299130:CDS 40.0%
CTGAAATCTGTTTCAACCCA+TGG - chr2_3:53623558-53623577 None:intergenic 40.0%
! TAAGAAGTCTAAGACCACCA+TGG - chr2_3:53623594-53623613 None:intergenic 40.0%
GAAGCTGGTATAAGGTGAAA+AGG + chr2_3:53623720-53623739 Msa0299130:three_prime_UTR 40.0%
! TTGTCATGGATAAGGCGCTA+AGG - chr2_3:53621168-53621187 None:intergenic 45.0%
CGCCTTATCCATGACAATTG+TGG + chr2_3:53621171-53621190 Msa0299130:five_prime_UTR 45.0%
AACGACCACCACAATTGTCA+TGG - chr2_3:53621182-53621201 None:intergenic 45.0%
! AGATAGAGTGGTGGAAGACA+TGG - chr2_3:53621290-53621309 None:intergenic 45.0%
!! CAGCTATGTTCTGGAAAGAG+TGG + chr2_3:53621414-53621433 Msa0299130:intron 45.0%
GTCTCTCTCTTACTCATGTC+AGG - chr2_3:53621555-53621574 None:intergenic 45.0%
GCTGGAATGCTTGTTCCTTA+TGG + chr2_3:53621615-53621634 Msa0299130:CDS 45.0%
GGAACAAGGAAGGATCCATA+AGG - chr2_3:53621633-53621652 None:intergenic 45.0%
TAACTAACCCTGGTGGAACA+AGG - chr2_3:53621647-53621666 None:intergenic 45.0%
TGGCAATGATGTAGTTGCAG+CGG + chr2_3:53622428-53622447 Msa0299130:CDS 45.0%
ATGATGTAGTTGCAGCGGAA+TGG + chr2_3:53622433-53622452 Msa0299130:CDS 45.0%
! TTGTGTAAGAGTACGGTCAC+CGG - chr2_3:53622475-53622494 None:intergenic 45.0%
TTCTGTCACTCTCTACCACA+AGG - chr2_3:53622730-53622749 None:intergenic 45.0%
TTGTACTGAGATCCATGGCA+GGG - chr2_3:53622839-53622858 None:intergenic 45.0%
ATTGTACTGAGATCCATGGC+AGG - chr2_3:53622840-53622859 None:intergenic 45.0%
GGTCATTGTACTGAGATCCA+TGG - chr2_3:53622844-53622863 None:intergenic 45.0%
GGATCTCAGTACAATGACCA+AGG + chr2_3:53622845-53622864 Msa0299130:CDS 45.0%
ACCAACTGAGTTAGGCTCAA+GGG - chr2_3:53623263-53623282 None:intergenic 45.0%
TACCAACTGAGTTAGGCTCA+AGG - chr2_3:53623264-53623283 None:intergenic 45.0%
TTGAGCCTAACTCAGTTGGT+AGG + chr2_3:53623263-53623282 Msa0299130:intron 45.0%
! TGAGCCTAACTCAGTTGGTA+GGG + chr2_3:53623264-53623283 Msa0299130:intron 45.0%
CCCCACTTATTCACCTTAAG+AGG + chr2_3:53623318-53623337 Msa0299130:intron 45.0%
GGCACATTGTGATGTTAGTG+TGG + chr2_3:53623509-53623528 Msa0299130:CDS 45.0%
!! TGTTAGTGTGGATGATGGGA+AGG + chr2_3:53623521-53623540 Msa0299130:CDS 45.0%
GGAAGGTTGTGTTTGTTCCA+TGG + chr2_3:53623538-53623557 Msa0299130:CDS 45.0%
! ATAAGGCGCTAAGGCCATGT+AGG - chr2_3:53621159-53621178 None:intergenic 50.0%
! GGTGGAAGACATGGTTGATG+AGG - chr2_3:53621281-53621300 None:intergenic 50.0%
ATGTCAGGTACACGATCAGC+AGG - chr2_3:53621540-53621559 None:intergenic 50.0%
GCTCTTTCACTTCCTACTGC+TGG + chr2_3:53621597-53621616 Msa0299130:CDS 50.0%
GGAACAAGCATTCCAGCAGT+AGG - chr2_3:53621612-53621631 None:intergenic 50.0%
GATCCTTCCTTGTTCCACCA+GGG + chr2_3:53621637-53621656 Msa0299130:CDS 50.0%
TAACCCTGGTGGAACAAGGA+AGG - chr2_3:53621643-53621662 None:intergenic 50.0%
ATCGTGTTCAAGGGCTCGAT+AGG - chr2_3:53622060-53622079 None:intergenic 50.0%
TACAGCTCAGGTTCTTCCAC+TGG + chr2_3:53622381-53622400 Msa0299130:intron 50.0%
CTTTGCTACAGTACCACCAG+TGG - chr2_3:53622400-53622419 None:intergenic 50.0%
CACTGGTGGTACTGTAGCAA+AGG + chr2_3:53622398-53622417 Msa0299130:CDS 50.0%
ACTGTAGCAAAGGATGCCGT+TGG + chr2_3:53622408-53622427 Msa0299130:CDS 50.0%
GCGGAATGGCTAAAGTCACA+TGG + chr2_3:53622447-53622466 Msa0299130:CDS 50.0%
TGGCTAAAGTCACATGGACC+CGG + chr2_3:53622453-53622472 Msa0299130:CDS 50.0%
! TGTGTAAGAGTACGGTCACC+GGG - chr2_3:53622474-53622493 None:intergenic 50.0%
GGTGACCGTACTCTTACACA+AGG + chr2_3:53622474-53622493 Msa0299130:CDS 50.0%
CTCTCTACCACAAGGTAGGT+AGG - chr2_3:53622722-53622741 None:intergenic 50.0%
GTCACTCTCTACCACAAGGT+AGG - chr2_3:53622726-53622745 None:intergenic 50.0%
AATGCCGTATGCACTCACCT+CGG + chr2_3:53622770-53622789 Msa0299130:CDS 50.0%
TGTACTGAGATCCATGGCAG+GGG - chr2_3:53622838-53622857 None:intergenic 50.0%
GACCAAGGAAGAGTTGTGAG+AGG + chr2_3:53622860-53622879 Msa0299130:CDS 50.0%
GTCCTCTCACAACTCTTCCT+TGG - chr2_3:53622865-53622884 None:intergenic 50.0%
CCAACTGAGTTAGGCTCAAG+GGG - chr2_3:53623262-53623281 None:intergenic 50.0%
ACGTCCCTACCAACTGAGTT+AGG - chr2_3:53623271-53623290 None:intergenic 50.0%
AGGTGAATAAGTGGGGTGTG+CGG - chr2_3:53623314-53623333 None:intergenic 50.0%
TGTTGGACAGTCTCTTGCGT+TGG + chr2_3:53623488-53623507 Msa0299130:intron 50.0%
TCAGAACAGGTGATGCTCCA+TGG + chr2_3:53623574-53623593 Msa0299130:CDS 50.0%
GGTTGCAGGAGATAGAGTGG+TGG - chr2_3:53621299-53621318 None:intergenic 55.0%
AGGGGTTGCAGGAGATAGAG+TGG - chr2_3:53621302-53621321 None:intergenic 55.0%
ATCTCCTGCAACCCCTTCTC+AGG + chr2_3:53621306-53621325 Msa0299130:CDS 55.0%
GATACCTGAGAAGGGGTTGC+AGG - chr2_3:53621313-53621332 None:intergenic 55.0%
AGCATCACTTGCCAGGCTAC+AGG + chr2_3:53621510-53621529 Msa0299130:CDS 55.0%
GGATCCTTCCTTGTTCCACC+AGG + chr2_3:53621636-53621655 Msa0299130:CDS 55.0%
AGCTCAGGTTCTTCCACTGG+TGG + chr2_3:53622384-53622403 Msa0299130:intron 55.0%
GGGTGATCCTACCTACCTTG+TGG + chr2_3:53622712-53622731 Msa0299130:intron 55.0%
ATGCCGTATGCACTCACCTC+GGG + chr2_3:53622771-53622790 Msa0299130:CDS 55.0%
ACACCCGAGGTGAGTGCATA+CGG - chr2_3:53622777-53622796 None:intergenic 55.0%
TAAATGGCACGACACACCCG+AGG - chr2_3:53622790-53622809 None:intergenic 55.0%
AAGTTCATCTGCCCCTGCCA+TGG + chr2_3:53622824-53622843 Msa0299130:CDS 55.0%
TGTGAGAGGACCTGCTCCTT+TGG + chr2_3:53622874-53622893 Msa0299130:CDS 55.0%
CCCCTTGAGCCTAACTCAGT+TGG + chr2_3:53623259-53623278 Msa0299130:intron 55.0%
GTGAATAAGTGGGGTGTGCG+GGG - chr2_3:53623312-53623331 None:intergenic 55.0%
GGTGAATAAGTGGGGTGTGC+GGG - chr2_3:53623313-53623332 None:intergenic 55.0%
GAACAGGTGATGCTCCATGG+TGG + chr2_3:53623577-53623596 Msa0299130:CDS 55.0%
GGGGATGAGCATCACTTGCC+AGG + chr2_3:53621503-53621522 Msa0299130:CDS 60.0%
CAGCAGGAATGCCTGTAGCC+TGG - chr2_3:53621524-53621543 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr2_3 gene 53621110 53623899 53621110 ID=Msa0299130;Name=Msa0299130
chr2_3 mRNA 53621110 53623899 53621110 ID=Msa0299130-mRNA-1;Parent=Msa0299130;Name=Msa0299130-mRNA-1;_AED=0.00;_eAED=0.00;_QI=179|1|1|1|1|1|5|294|229
chr2_3 exon 53621110 53621327 53621110 ID=Msa0299130-mRNA-1:exon:17194;Parent=Msa0299130-mRNA-1
chr2_3 exon 53621417 53621658 53621417 ID=Msa0299130-mRNA-1:exon:17195;Parent=Msa0299130-mRNA-1
chr2_3 exon 53622386 53622503 53622386 ID=Msa0299130-mRNA-1:exon:17196;Parent=Msa0299130-mRNA-1
chr2_3 exon 53622713 53622895 53622713 ID=Msa0299130-mRNA-1:exon:17197;Parent=Msa0299130-mRNA-1
chr2_3 exon 53623498 53623899 53623498 ID=Msa0299130-mRNA-1:exon:17198;Parent=Msa0299130-mRNA-1
chr2_3 five_prime_UTR 53621110 53621288 53621110 ID=Msa0299130-mRNA-1:five_prime_utr;Parent=Msa0299130-mRNA-1
chr2_3 CDS 53621289 53621327 53621289 ID=Msa0299130-mRNA-1:cds;Parent=Msa0299130-mRNA-1
chr2_3 CDS 53621417 53621658 53621417 ID=Msa0299130-mRNA-1:cds;Parent=Msa0299130-mRNA-1
chr2_3 CDS 53622386 53622503 53622386 ID=Msa0299130-mRNA-1:cds;Parent=Msa0299130-mRNA-1
chr2_3 CDS 53622713 53622895 53622713 ID=Msa0299130-mRNA-1:cds;Parent=Msa0299130-mRNA-1
chr2_3 CDS 53623498 53623605 53623498 ID=Msa0299130-mRNA-1:cds;Parent=Msa0299130-mRNA-1
chr2_3 three_prime_UTR 53623606 53623899 53623606 ID=Msa0299130-mRNA-1:three_prime_utr;Parent=Msa0299130-mRNA-1
Gene Sequence

>Msa0299130

ATGTCTTCCACCACTCTATCTCCTGCAACCCCTTCTCAGCTATGTTCTGGAAAGAGTGGAATTTCATGTCCTTCAATAGGACTACTTGTGAAGCCAACAAGAACTCAGATGATTGGTAAAGGTAAGGGGATGAGCATCACTTGCCAGGCTACAGGCATTCCTGCTGATCGTGTACCTGACATGAGTAAGAGAGAGACCTTGAATCTTCTTCTTCTTGGTGCTCTTTCACTTCCTACTGCTGGAATGCTTGTTCCTTATGGATCCTTCCTTGTTCCACCAGGCTCAGGTTCTTCCACTGGTGGTACTGTAGCAAAGGATGCCGTTGGCAATGATGTAGTTGCAGCGGAATGGCTAAAGTCACATGGACCCGGTGACCGTACTCTTACACAAGGATTAAAGGGTGATCCTACCTACCTTGTGGTAGAGAGTGACAGAACACTTGCAACATTTGCAATTAATGCCGTATGCACTCACCTCGGGTGTGTCGTGCCATTTAATCAAGCTGAGAAGAAGTTCATCTGCCCCTGCCATGGATCTCAGTACAATGACCAAGGAAGAGTTGTGAGAGGACCTGCTCCTTTGTCTCTTGCGTTGGCACATTGTGATGTTAGTGTGGATGATGGGAAGGTTGTGTTTGTTCCATGGGTTGAAACAGATTTCAGAACAGGTGATGCTCCATGGTGGTCTTAG

Protein sequence

>Msa0299130

MSSTTLSPATPSQLCSGKSGISCPSIGLLVKPTRTQMIGKGKGMSITCQATGIPADRVPDMSKRETLNLLLLGALSLPTAGMLVPYGSFLVPPGSGSSTGGTVAKDAVGNDVVAAEWLKSHGPGDRTLTQGLKGDPTYLVVESDRTLATFAINAVCTHLGCVVPFNQAEKKFICPCHGSQYNDQGRVVRGPAPLSLALAHCDVSVDDGKVVFVPWVETDFRTGDAPWWS*