AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0212950


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0212950 MtrunA17_Chr2g0312521 97.059 136 4 0 1 136 1 136 5.21e-91 259
Msa0212950 MtrunA17_Chr4g0053641 54.430 79 17 1 12 90 20 79 2.80e-20 79.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0212950 AT1G79040.1 71.429 140 36 2 1 136 1 140 4.37e-64 192

Find 73 sgRNAs with CRISPR-Local

Find 171 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTCCGACTGGCTTGGCTATC+TGG 0.093434 2_1:-55389660 Msa0212950:CDS
TTGAACTAATCTAAGATTAA+TGG 0.187241 2_1:+55389200 None:intergenic
TAACATGTTGATAAACATTT+TGG 0.191956 2_1:+55389403 None:intergenic
CCATTTAAGTATTTAGTCTT+TGG 0.256901 2_1:-55389304 Msa0212950:three_prime_UTR
CCAAAGACTAAATACTTAAA+TGG 0.283652 2_1:+55389304 None:intergenic
GTTGAGAAATCTTCAGTTAG+AGG 0.284192 2_1:-55391815 Msa0212950:CDS
CAGTCCTTTGGGTCGTAGAT+AGG 0.323072 2_1:+55390237 None:intergenic
TATATAACCATGCATCTCTA+TGG 0.324691 2_1:-55389431 Msa0212950:three_prime_UTR
CCGGTTGGAGACCAGTCCTT+TGG 0.338674 2_1:+55390225 None:intergenic
CCCGATGGAAAAGATGCTTC+TGG 0.380109 2_1:-55391553 Msa0212950:CDS
CATGAATGAAAATACCTAAT+GGG 0.381352 2_1:+55388861 None:intergenic
ATTAAGACTGACACACCTTA+TGG 0.391389 2_1:-55391740 Msa0212950:intron
AGTATTTAGTCTTTGGCTTA+CGG 0.392100 2_1:-55389297 Msa0212950:three_prime_UTR
AAAATACCTAATGGGATTGC+GGG 0.398310 2_1:+55388869 None:intergenic
GCATGAATGAAAATACCTAA+TGG 0.404950 2_1:+55388860 None:intergenic
GAGGACTACCTACCCTTTCA+AGG 0.407032 2_1:-55391796 Msa0212950:CDS
CGGTTGGAGACCAGTCCTTT+GGG 0.408090 2_1:+55390226 None:intergenic
CACCGTATTTGTCCACAAAC+TGG 0.410816 2_1:+55390670 None:intergenic
TCCGACTGGCTTGGCTATCT+GGG 0.439109 2_1:-55389659 Msa0212950:CDS
AATACACCCGCAATCCCATT+AGG 0.444514 2_1:-55388875 Msa0212950:three_prime_UTR
TTCTCAACTCTGAAAGGAGT+TGG 0.447149 2_1:+55391830 None:intergenic
ACCACTGGCAACAACTTTGA+AGG 0.450669 2_1:+55391772 None:intergenic
AAAGGGTGTTTACCAGTTTG+TGG 0.454085 2_1:-55390682 Msa0212950:CDS
CTCTTTGATAATACTAATGT+AGG 0.459828 2_1:-55389258 Msa0212950:three_prime_UTR
GTGCTAATGTTGATGGATAC+AGG 0.463270 2_1:-55390650 Msa0212950:intron
AAATACGGTGCTAATGTTGA+TGG 0.464376 2_1:-55390657 Msa0212950:CDS
CTTAATCTTCTTGCCACCAC+TGG 0.469574 2_1:+55391757 None:intergenic
TACCAGTTTGTGGACAAATA+CGG 0.473942 2_1:-55390672 Msa0212950:CDS
TTATTAATTGCAGGTCCGAC+TGG 0.479017 2_1:-55389673 Msa0212950:intron
AACTTTGAAGGGCCTTGAAA+GGG 0.480906 2_1:+55391784 None:intergenic
ATCTGGGCAGTAACTCTAGC+TGG 0.496777 2_1:-55389643 Msa0212950:CDS
TTTCATGCTGTAAGCTGTCT+CGG 0.498626 2_1:-55389223 Msa0212950:three_prime_UTR
CCAAAGGACTGGTCTCCAAC+CGG 0.502102 2_1:-55390225 Msa0212950:CDS
CAAACAAACTCCACCGAGAT+CGG 0.503968 2_1:-55389153 Msa0212950:three_prime_UTR
ACTCTAGCTGGTCTTCTAGC+TGG 0.504630 2_1:-55389631 Msa0212950:CDS
TTTGTTTGTGCCACGTGGCA+TGG 0.508119 2_1:+55391981 None:intergenic
CAACTTTGAAGGGCCTTGAA+AGG 0.508466 2_1:+55391783 None:intergenic
AGTCCTTTGGGTCGTAGATA+GGG 0.509259 2_1:+55390238 None:intergenic
CACAATATTTATAGAACAGA+AGG 0.512290 2_1:+55389478 None:intergenic
TTCAAAGTTGTTGCCAGTGG+TGG 0.513402 2_1:-55391770 Msa0212950:CDS
AATTGCAGGTCCGACTGGCT+TGG 0.514526 2_1:-55389668 Msa0212950:intron
TGCTTCTGGCAGGAAACAAA+AGG 0.517286 2_1:-55391539 Msa0212950:intron
GAAGATTTCTCAACTCTGAA+AGG 0.530649 2_1:+55391824 None:intergenic
ACACCAATAGCAATCTGAAA+AGG 0.531985 2_1:-55388974 Msa0212950:three_prime_UTR
TGTTTATAAGTGATAGTCTA+CGG 0.536090 2_1:-55389357 Msa0212950:three_prime_UTR
GAAAATACCTAATGGGATTG+CGG 0.541326 2_1:+55388868 None:intergenic
TTTAGGAACTGGAGGTGGCA+TGG 0.542136 2_1:-55391581 Msa0212950:intron
ATGGAAAAGATGCTTCTGGC+AGG 0.542571 2_1:-55391549 Msa0212950:CDS
TGAAATGGCATCTTCAGTGA+TGG 0.543667 2_1:-55391870 Msa0212950:exon
AAATGCAAAGCACATAATGT+GGG 0.546643 2_1:-55389124 Msa0212950:three_prime_UTR
AAAATGCAAAGCACATAATG+TGG 0.552242 2_1:-55389125 Msa0212950:three_prime_UTR
TCTGTTCTATAAATATTGTG+TGG 0.554934 2_1:-55389475 Msa0212950:three_prime_UTR
CCCTTCAAAGTTGTTGCCAG+TGG 0.558879 2_1:-55391773 Msa0212950:CDS
CCACTGGCAACAACTTTGAA+GGG 0.578449 2_1:+55391773 None:intergenic
CTAGCTGGTCTTCTAGCTGG+TGG 0.579831 2_1:-55389628 Msa0212950:CDS
GGTGGCATGGCCTTGCCCGA+TGG 0.580943 2_1:-55391568 Msa0212950:CDS
ATATACTCATCAATTACTTG+TGG 0.583157 2_1:-55389509 Msa0212950:three_prime_UTR
CTATCTACGACCCAAAGGAC+TGG 0.590400 2_1:-55390236 Msa0212950:CDS
GGTGAAGCCATAGAGATGCA+TGG 0.605619 2_1:+55389424 None:intergenic
TTGAAGGGCCTTGAAAGGGT+AGG 0.616076 2_1:+55391788 None:intergenic
ACCTCCAGTGTAGACATCAC+CGG 0.624297 2_1:+55390206 None:intergenic
AATAACAAGTGTACTCAACA+TGG 0.633393 2_1:+55391949 None:intergenic
GTATTATCAAAGAGATAACA+AGG 0.640449 2_1:+55389267 None:intergenic
CAGCCCTATCTACGACCCAA+AGG 0.645785 2_1:-55390241 Msa0212950:CDS
CCAACCGGTGATGTCTACAC+TGG 0.647391 2_1:-55390210 Msa0212950:CDS
AAGCACTTGTGTTGTAGACA+AGG 0.648013 2_1:+55389599 None:intergenic
GCCCAGATAGCCAAGCCAGT+CGG 0.648776 2_1:+55389658 None:intergenic
ACCGGTGATGTCTACACTGG+AGG 0.649993 2_1:-55390207 Msa0212950:intron
AATGCAAAGCACATAATGTG+GGG 0.661198 2_1:-55389123 Msa0212950:three_prime_UTR
CCAGTGTAGACATCACCGGT+TGG 0.671824 2_1:+55390210 None:intergenic
ACAAACTCCACCGAGATCGG+AGG 0.693791 2_1:-55389150 Msa0212950:three_prime_UTR
TTGTATTATATGCATCAGTG+TGG 0.704850 2_1:+55388936 None:intergenic
ACCACATATTCCATGCCACG+TGG 0.713067 2_1:-55391991 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATTTTGTTAATATGATTTT+AGG - chr2_1:55389241-55389260 Msa0212950:three_prime_UTR 10.0%
!!! GCTTTTTATTTATTTTATTT+TGG - chr2_1:55389337-55389356 Msa0212950:three_prime_UTR 10.0%
!!! TTTTATTTATTTTATTTTGG+TGG - chr2_1:55389340-55389359 Msa0212950:three_prime_UTR 10.0%
!!! AACTTAATAAACTTTTTTTG+AGG - chr2_1:55389406-55389425 Msa0212950:three_prime_UTR 15.0%
!!! TGTTTAAAACCTTTATTTAT+TGG - chr2_1:55389792-55389811 Msa0212950:intron 15.0%
!! TATTTACTACCAATAAATAA+AGG + chr2_1:55389804-55389823 None:intergenic 15.0%
!!! TCTTAATTTCAATTTTATTC+AGG - chr2_1:55390133-55390152 Msa0212950:intron 15.0%
!!! CTTAATTTCAATTTTATTCA+GGG - chr2_1:55390134-55390153 Msa0212950:intron 15.0%
!!! AAATTACATTTTGAATAAGT+AGG + chr2_1:55390563-55390582 None:intergenic 15.0%
!! ATTCAATTATTTACTTCATA+GGG - chr2_1:55390942-55390961 Msa0212950:intron 15.0%
!!! TAACAAATTTTATTAATTGC+AGG - chr2_1:55391157-55391176 Msa0212950:intron 15.0%
!!! TTTTATATCATAGTGAAACT+TGG - chr2_1:55388912-55388931 Msa0212950:three_prime_UTR 20.0%
!!! TCAAATTCTTTTTTGGTAAT+TGG + chr2_1:55388952-55388971 None:intergenic 20.0%
!! TACCAAAAAAGAATTTGAAA+TGG - chr2_1:55388954-55388973 Msa0212950:three_prime_UTR 20.0%
!! CAATTGAACTAAGAAAAAAA+AGG + chr2_1:55389139-55389158 None:intergenic 20.0%
!!! GGAATTTTATGTATTAACAT+AGG - chr2_1:55389361-55389380 Msa0212950:three_prime_UTR 20.0%
!! ATTATCAAGATTTATTTCCA+TGG - chr2_1:55389512-55389531 Msa0212950:three_prime_UTR 20.0%
!! TTATCAAGATTTATTTCCAT+GGG - chr2_1:55389513-55389532 Msa0212950:three_prime_UTR 20.0%
!!! ATTTTTTTGTTTTAATCCTC+TGG + chr2_1:55389543-55389562 None:intergenic 20.0%
!!! ATTTATTCAACTTTTAGCTT+TGG - chr2_1:55389580-55389599 Msa0212950:exon 20.0%
!! GATCTAATGAAATACATTAA+AGG - chr2_1:55389932-55389951 Msa0212950:intron 20.0%
!! AATAATAGATAACAATGTTC+TGG + chr2_1:55390036-55390055 None:intergenic 20.0%
!!! TTTCATTTTTTCTGAATTCT+AGG - chr2_1:55390220-55390239 Msa0212950:CDS 20.0%
!! ATTAAACATGTAAACAAAAC+TGG + chr2_1:55390247-55390266 None:intergenic 20.0%
!! ACATGTTTAATAACATAGTT+AGG - chr2_1:55390256-55390275 Msa0212950:intron 20.0%
!! TGAAATAATTATGTCATTAG+AGG - chr2_1:55390279-55390298 Msa0212950:intron 20.0%
!!! TTTTTAAAACATTGCTTTAG+AGG + chr2_1:55390743-55390762 None:intergenic 20.0%
!!! TAAAGCAATGTTTTAAAAAC+TGG - chr2_1:55390744-55390763 Msa0212950:intron 20.0%
!! GATTCAATTATTTACTTCAT+AGG - chr2_1:55390941-55390960 Msa0212950:intron 20.0%
!!! TTTGTTATTATACTATTGCT+AGG + chr2_1:55391144-55391163 None:intergenic 20.0%
!!! TAACATGTTGATAAACATTT+TGG + chr2_1:55391439-55391458 None:intergenic 20.0%
!!! TTGAACTAATCTAAGATTAA+TGG + chr2_1:55391642-55391661 None:intergenic 20.0%
!!! TTCTTTTTTGGTAATTGGTA+TGG + chr2_1:55388947-55388966 None:intergenic 25.0%
!!! TGCCATTTCAAATTCTTTTT+TGG + chr2_1:55388959-55388978 None:intergenic 25.0%
!!! GTTAATATGATTTTAGGAAC+TGG - chr2_1:55389247-55389266 Msa0212950:three_prime_UTR 25.0%
!! ACAAAAGGTGTGTTTAATTA+TGG - chr2_1:55389315-55389334 Msa0212950:three_prime_UTR 25.0%
! GATAACTAAAATCTGACTTA+TGG + chr2_1:55389475-55389494 None:intergenic 25.0%
!! TACCAAGTTTTTCATATAAG+AGG + chr2_1:55389641-55389660 None:intergenic 25.0%
!!! AAGTAAGGTGGATTTTATAT+AGG - chr2_1:55389910-55389929 Msa0212950:intron 25.0%
!! TTTCAATTTTATTCAGGGAA+AGG - chr2_1:55390139-55390158 Msa0212950:intron 25.0%
!! TTCAATTTTATTCAGGGAAA+GGG - chr2_1:55390140-55390159 Msa0212950:intron 25.0%
! TTAAACAATCATGACATAAG+TGG - chr2_1:55390314-55390333 Msa0212950:intron 25.0%
! TAGGTCAAAGTCTATATAAT+TGG + chr2_1:55390544-55390563 None:intergenic 25.0%
!!! AGGTAAGAAACTTCTTTTTT+TGG - chr2_1:55390652-55390671 Msa0212950:CDS 25.0%
!!! GGTAAGAAACTTCTTTTTTT+GGG - chr2_1:55390653-55390672 Msa0212950:CDS 25.0%
! ATAAAATAGCATGAACTGTA+GGG - chr2_1:55390708-55390727 Msa0212950:intron 25.0%
! CACATTATAACATCAACAAT+AGG + chr2_1:55390875-55390894 None:intergenic 25.0%
! ATATACTCATCAATTACTTG+TGG - chr2_1:55391330-55391349 Msa0212950:intron 25.0%
! CACAATATTTATAGAACAGA+AGG + chr2_1:55391364-55391383 None:intergenic 25.0%
! TCTGTTCTATAAATATTGTG+TGG - chr2_1:55391364-55391383 Msa0212950:intron 25.0%
! TGTTTATAAGTGATAGTCTA+CGG - chr2_1:55391482-55391501 Msa0212950:intron 25.0%
! CCAAAGACTAAATACTTAAA+TGG + chr2_1:55391538-55391557 None:intergenic 25.0%
!! CCATTTAAGTATTTAGTCTT+TGG - chr2_1:55391535-55391554 Msa0212950:intron 25.0%
! GTATTATCAAAGAGATAACA+AGG + chr2_1:55391575-55391594 None:intergenic 25.0%
!! CTCTTTGATAATACTAATGT+AGG - chr2_1:55391581-55391600 Msa0212950:intron 25.0%
! CATGAATGAAAATACCTAAT+GGG + chr2_1:55391981-55392000 None:intergenic 25.0%
AATAACAAGTGTACTCAACA+TGG + chr2_1:55388893-55388912 None:intergenic 30.0%
GTACTAATGAACTAACCATA+AGG + chr2_1:55389117-55389136 None:intergenic 30.0%
!! AATATGATTTTAGGAACTGG+AGG - chr2_1:55389250-55389269 Msa0212950:three_prime_UTR 30.0%
TATGTATTAACATAGGCTTG+TGG - chr2_1:55389368-55389387 Msa0212950:three_prime_UTR 30.0%
! TTGATAATTCGTAGTTCGAT+CGG + chr2_1:55389500-55389519 None:intergenic 30.0%
AGAATAAATAGTAGACCAAG+AGG + chr2_1:55389606-55389625 None:intergenic 30.0%
! GTTTTTCATATAAGAGGAGA+GGG + chr2_1:55389635-55389654 None:intergenic 30.0%
! AGTTTTTCATATAAGAGGAG+AGG + chr2_1:55389636-55389655 None:intergenic 30.0%
CTCCTCTTATATGAAAAACT+TGG - chr2_1:55389636-55389655 Msa0212950:CDS 30.0%
! GAAAAACTTGGTAGTTTCTA+AGG - chr2_1:55389648-55389667 Msa0212950:CDS 30.0%
TAAGTAGAGAGTGATTCTTA+AGG - chr2_1:55389750-55389769 Msa0212950:intron 30.0%
AAGTAGAGAGTGATTCTTAA+GGG - chr2_1:55389751-55389770 Msa0212950:intron 30.0%
GTTTCTCACAAGATAAAGTA+AGG - chr2_1:55389895-55389914 Msa0212950:intron 30.0%
! TTGAGTGTCCCTTATATTTT+TGG - chr2_1:55390055-55390074 Msa0212950:intron 30.0%
! TGAGTGTCCCTTATATTTTT+GGG - chr2_1:55390056-55390075 Msa0212950:intron 30.0%
CAGAAAGCCCAAAAATATAA+GGG + chr2_1:55390066-55390085 None:intergenic 30.0%
TCAGAAAGCCCAAAAATATA+AGG + chr2_1:55390067-55390086 None:intergenic 30.0%
GCTCGTACATATAAAAAAGT+TGG - chr2_1:55390431-55390450 Msa0212950:intron 30.0%
GATAAAATAGCATGAACTGT+AGG - chr2_1:55390707-55390726 Msa0212950:intron 30.0%
!! TAGAGAGTAGTGTTTAGTTT+TGG - chr2_1:55390977-55390996 Msa0212950:intron 30.0%
AAATCTTTGTATAGCCAACA+CGG + chr2_1:55391084-55391103 None:intergenic 30.0%
TATATAACCATGCATCTCTA+TGG - chr2_1:55391408-55391427 Msa0212950:intron 30.0%
! AGTATTTAGTCTTTGGCTTA+CGG - chr2_1:55391542-55391561 Msa0212950:CDS 30.0%
AAAATGCAAAGCACATAATG+TGG - chr2_1:55391714-55391733 Msa0212950:intron 30.0%
AAATGCAAAGCACATAATGT+GGG - chr2_1:55391715-55391734 Msa0212950:intron 30.0%
! TTACCTTTTCAGATTGCTAT+TGG + chr2_1:55391871-55391890 None:intergenic 30.0%
TTGTATTATATGCATCAGTG+TGG + chr2_1:55391906-55391925 None:intergenic 30.0%
GCATGAATGAAAATACCTAA+TGG + chr2_1:55391982-55392001 None:intergenic 30.0%
GAAGATTTCTCAACTCTGAA+AGG + chr2_1:55389018-55389037 None:intergenic 35.0%
GTTGAGAAATCTTCAGTTAG+AGG - chr2_1:55389024-55389043 Msa0212950:three_prime_UTR 35.0%
ATTAAGACTGACACACCTTA+TGG - chr2_1:55389099-55389118 Msa0212950:three_prime_UTR 35.0%
!! CTTGGTAGTTTCTAAGGTAT+TGG - chr2_1:55389654-55389673 Msa0212950:CDS 35.0%
AACCACATAGGCTAATTGAA+AGG - chr2_1:55389707-55389726 Msa0212950:intron 35.0%
! ATCCTTTCAATTAGCCTATG+TGG + chr2_1:55389712-55389731 None:intergenic 35.0%
TCTCACAAGATAAAGTAAGG+TGG - chr2_1:55389898-55389917 Msa0212950:intron 35.0%
! TTTTGGGCTTTCTGAATTGT+TGG - chr2_1:55390072-55390091 Msa0212950:intron 35.0%
TACCAGTTTGTGGACAAATA+CGG - chr2_1:55390167-55390186 Msa0212950:intron 35.0%
! AAATACGGTGCTAATGTTGA+TGG - chr2_1:55390182-55390201 Msa0212950:intron 35.0%
CAAGACTAATGTCTCATGTT+TGG - chr2_1:55390396-55390415 Msa0212950:intron 35.0%
! GACTAATGTCTCTCATGTTT+TGG - chr2_1:55390490-55390509 Msa0212950:intron 35.0%
ATAGGGCTGCATAATAAAAC+AGG + chr2_1:55390587-55390606 None:intergenic 35.0%
ATAAGTTCAACTGGTCGAAT+TGG - chr2_1:55390776-55390795 Msa0212950:intron 35.0%
TAAGTTCAACTGGTCGAATT+GGG - chr2_1:55390777-55390796 Msa0212950:intron 35.0%
! CATGAGCGAAGATAGTTTTT+AGG + chr2_1:55391008-55391027 None:intergenic 35.0%
!!! CCTTCATTTTTAGAGCTACA+TGG + chr2_1:55391310-55391329 None:intergenic 35.0%
!! CCATGTAGCTCTAAAAATGA+AGG - chr2_1:55391307-55391326 Msa0212950:intron 35.0%
! CAATGCATGTTTTCTGTTCA+TGG + chr2_1:55391464-55391483 None:intergenic 35.0%
AATGCAAAGCACATAATGTG+GGG - chr2_1:55391716-55391735 Msa0212950:intron 35.0%
!! GATAAATCTTTTGCTGACTG+AGG + chr2_1:55391771-55391790 None:intergenic 35.0%
ACACCAATAGCAATCTGAAA+AGG - chr2_1:55391865-55391884 Msa0212950:CDS 35.0%
AAAATACCTAATGGGATTGC+GGG + chr2_1:55391973-55391992 None:intergenic 35.0%
GAAAATACCTAATGGGATTG+CGG + chr2_1:55391974-55391993 None:intergenic 35.0%
TGAAATGGCATCTTCAGTGA+TGG - chr2_1:55388969-55388988 Msa0212950:three_prime_UTR 40.0%
! TTCTCAACTCTGAAAGGAGT+TGG + chr2_1:55389012-55389031 None:intergenic 40.0%
! AACTTTGAAGGGCCTTGAAA+GGG + chr2_1:55389058-55389077 None:intergenic 40.0%
!! ATGATTTTAGGAACTGGAGG+TGG - chr2_1:55389253-55389272 Msa0212950:three_prime_UTR 40.0%
!!! AACTTTTAGCTTTGGCCTCT+TGG - chr2_1:55389588-55389607 Msa0212950:CDS 40.0%
CCTATGTGGTTGAGATGTTA+AGG + chr2_1:55389698-55389717 None:intergenic 40.0%
CCTTAACATCTCAACCACAT+AGG - chr2_1:55389695-55389714 Msa0212950:intron 40.0%
! GGCTTTCTGAATTGTTGGTT+TGG - chr2_1:55390077-55390096 Msa0212950:intron 40.0%
!! AAAGGGTGTTTACCAGTTTG+TGG - chr2_1:55390157-55390176 Msa0212950:intron 40.0%
! GTGCTAATGTTGATGGATAC+AGG - chr2_1:55390189-55390208 Msa0212950:intron 40.0%
GCATGAACTGTAGGGATTTA+TGG - chr2_1:55390716-55390735 Msa0212950:intron 40.0%
ATCGAGCTGATAAGTTCAAC+TGG - chr2_1:55390767-55390786 Msa0212950:intron 40.0%
CAACTATTTCAAGACCGTGT+TGG - chr2_1:55391067-55391086 Msa0212950:intron 40.0%
TTATTAATTGCAGGTCCGAC+TGG - chr2_1:55391166-55391185 Msa0212950:intron 40.0%
AAGCACTTGTGTTGTAGACA+AGG + chr2_1:55391243-55391262 None:intergenic 40.0%
TTTCATGCTGTAAGCTGTCT+CGG - chr2_1:55391616-55391635 Msa0212950:intron 40.0%
!! TGCATTTTAACCTCCGATCT+CGG + chr2_1:55391702-55391721 None:intergenic 40.0%
!! GTGATTTTGTTTGTGCCACG+TGG + chr2_1:55388866-55388885 None:intergenic 45.0%
! CAACTTTGAAGGGCCTTGAA+AGG + chr2_1:55389059-55389078 None:intergenic 45.0%
CCACTGGCAACAACTTTGAA+GGG + chr2_1:55389069-55389088 None:intergenic 45.0%
ACCACTGGCAACAACTTTGA+AGG + chr2_1:55389070-55389089 None:intergenic 45.0%
TTCAAAGTTGTTGCCAGTGG+TGG - chr2_1:55389069-55389088 Msa0212950:three_prime_UTR 45.0%
CTTAATCTTCTTGCCACCAC+TGG + chr2_1:55389085-55389104 None:intergenic 45.0%
!!! CCAGAAGCATCTTTTCCATC+GGG + chr2_1:55389289-55389308 None:intergenic 45.0%
!!! GCCAGAAGCATCTTTTCCAT+CGG + chr2_1:55389290-55389309 None:intergenic 45.0%
ATGGAAAAGATGCTTCTGGC+AGG - chr2_1:55389290-55389309 Msa0212950:three_prime_UTR 45.0%
TGCTTCTGGCAGGAAACAAA+AGG - chr2_1:55389300-55389319 Msa0212950:three_prime_UTR 45.0%
TATTTCCATGGGAACACCAG+AGG - chr2_1:55389524-55389543 Msa0212950:three_prime_UTR 45.0%
TTAATCCTCTGGTGTTCCCA+TGG + chr2_1:55389532-55389551 None:intergenic 45.0%
CACCGTATTTGTCCACAAAC+TGG + chr2_1:55390172-55390191 None:intergenic 45.0%
AGTCCTTTGGGTCGTAGATA+GGG + chr2_1:55390604-55390623 None:intergenic 45.0%
TTGGGAATCGACTACTTCAC+CGG - chr2_1:55390795-55390814 Msa0212950:intron 45.0%
!! CGAATTGCTCAGTTCTGAAC+CGG + chr2_1:55390817-55390836 None:intergenic 45.0%
CAAACAAACTCCACCGAGAT+CGG - chr2_1:55391686-55391705 Msa0212950:intron 45.0%
!! ATTTTAACCTCCGATCTCGG+TGG + chr2_1:55391699-55391718 None:intergenic 45.0%
!! TCTTTTGCTGACTGAGGTTG+AGG + chr2_1:55391765-55391784 None:intergenic 45.0%
AATACACCCGCAATCCCATT+AGG - chr2_1:55391964-55391983 Msa0212950:five_prime_UTR 45.0%
GAGGACTACCTACCCTTTCA+AGG - chr2_1:55389043-55389062 Msa0212950:three_prime_UTR 50.0%
TTGAAGGGCCTTGAAAGGGT+AGG + chr2_1:55389054-55389073 None:intergenic 50.0%
CCCTTCAAAGTTGTTGCCAG+TGG - chr2_1:55389066-55389085 Msa0212950:three_prime_UTR 50.0%
TTTAGGAACTGGAGGTGGCA+TGG - chr2_1:55389258-55389277 Msa0212950:three_prime_UTR 50.0%
! AGCATCTTTTCCATCGGGCA+AGG + chr2_1:55389284-55389303 None:intergenic 50.0%
CCCGATGGAAAAGATGCTTC+TGG - chr2_1:55389286-55389305 Msa0212950:three_prime_UTR 50.0%
CAGTCCTTTGGGTCGTAGAT+AGG + chr2_1:55390605-55390624 None:intergenic 50.0%
CTATCTACGACCCAAAGGAC+TGG - chr2_1:55390603-55390622 Msa0212950:intron 50.0%
ACCTCCAGTGTAGACATCAC+CGG + chr2_1:55390636-55390655 None:intergenic 50.0%
ATCTGGGCAGTAACTCTAGC+TGG - chr2_1:55391196-55391215 Msa0212950:intron 50.0%
!! ACTCTAGCTGGTCTTCTAGC+TGG - chr2_1:55391208-55391227 Msa0212950:intron 50.0%
GGTGAAGCCATAGAGATGCA+TGG + chr2_1:55391418-55391437 None:intergenic 50.0%
CAGCCCTATCTACGACCCAA+AGG - chr2_1:55390598-55390617 Msa0212950:intron 55.0%
CGGTTGGAGACCAGTCCTTT+GGG + chr2_1:55390616-55390635 None:intergenic 55.0%
!! CCAAAGGACTGGTCTCCAAC+CGG - chr2_1:55390614-55390633 Msa0212950:intron 55.0%
CCAGTGTAGACATCACCGGT+TGG + chr2_1:55390632-55390651 None:intergenic 55.0%
CCAACCGGTGATGTCTACAC+TGG - chr2_1:55390629-55390648 Msa0212950:intron 55.0%
ACCGGTGATGTCTACACTGG+AGG - chr2_1:55390632-55390651 Msa0212950:intron 55.0%
! AATTGCAGGTCCGACTGGCT+TGG - chr2_1:55391171-55391190 Msa0212950:intron 55.0%
!! TCCGACTGGCTTGGCTATCT+GGG - chr2_1:55391180-55391199 Msa0212950:intron 55.0%
!! CTAGCTGGTCTTCTAGCTGG+TGG - chr2_1:55391211-55391230 Msa0212950:intron 55.0%
ACAAACTCCACCGAGATCGG+AGG - chr2_1:55391689-55391708 Msa0212950:intron 55.0%
CCGGTTGGAGACCAGTCCTT+TGG + chr2_1:55390617-55390636 None:intergenic 60.0%
!! GTCCGACTGGCTTGGCTATC+TGG - chr2_1:55391179-55391198 Msa0212950:intron 60.0%
GCCCAGATAGCCAAGCCAGT+CGG + chr2_1:55391184-55391203 None:intergenic 60.0%
! GGTGGCATGGCCTTGCCCGA+TGG - chr2_1:55389271-55389290 Msa0212950:three_prime_UTR 70.0%
Chromosome Type Strat End Strand Name
chr2_1 gene 55388860 55392001 55388860 ID=Msa0212950;Name=Msa0212950
chr2_1 mRNA 55388860 55392001 55388860 ID=Msa0212950-mRNA-1;Parent=Msa0212950;Name=Msa0212950-mRNA-1;_AED=0.03;_eAED=0.03;_QI=113|1|1|1|1|1|5|728|136
chr2_1 exon 55388860 55389682 55388860 ID=Msa0212950-mRNA-1:exon:15395;Parent=Msa0212950-mRNA-1
chr2_1 exon 55390208 55390260 55390208 ID=Msa0212950-mRNA-1:exon:15394;Parent=Msa0212950-mRNA-1
chr2_1 exon 55390651 55390706 55390651 ID=Msa0212950-mRNA-1:exon:15393;Parent=Msa0212950-mRNA-1
chr2_1 exon 55391540 55391598 55391540 ID=Msa0212950-mRNA-1:exon:15392;Parent=Msa0212950-mRNA-1
chr2_1 exon 55391741 55392001 55391741 ID=Msa0212950-mRNA-1:exon:15391;Parent=Msa0212950-mRNA-1
chr2_1 five_prime_UTR 55391889 55392001 55391889 ID=Msa0212950-mRNA-1:five_prime_utr;Parent=Msa0212950-mRNA-1
chr2_1 CDS 55391741 55391888 55391741 ID=Msa0212950-mRNA-1:cds;Parent=Msa0212950-mRNA-1
chr2_1 CDS 55391540 55391598 55391540 ID=Msa0212950-mRNA-1:cds;Parent=Msa0212950-mRNA-1
chr2_1 CDS 55390651 55390706 55390651 ID=Msa0212950-mRNA-1:cds;Parent=Msa0212950-mRNA-1
chr2_1 CDS 55390208 55390260 55390208 ID=Msa0212950-mRNA-1:cds;Parent=Msa0212950-mRNA-1
chr2_1 CDS 55389588 55389682 55389588 ID=Msa0212950-mRNA-1:cds;Parent=Msa0212950-mRNA-1
chr2_1 three_prime_UTR 55388860 55389587 55388860 ID=Msa0212950-mRNA-1:three_prime_utr;Parent=Msa0212950-mRNA-1
Gene Sequence

>Msa0212950

ATGGCATCTTCAGTGATGGCTTCTGTGAGTTTGAAACCAACTCCTTTCAGAGTTGAGAAATCTTCAGTTAGAGGACTACCTACCCTTTCAAGGCCCTTCAAAGTTGTTGCCAGTGGTGGCAAGAAGATTAAGACTGACACACCTTATGGAACTGGAGGTGGCATGGCCTTGCCCGATGGAAAAGATGCTTCTGGCAGGAAACAAAAGGGAAAGGGTGTTTACCAGTTTGTGGACAAATACGGTGCTAATGTTGATGGATACAGCCCTATCTACGACCCAAAGGACTGGTCTCCAACCGGTGATGTCTACACTGGAGGTCCGACTGGCTTGGCTATCTGGGCAGTAACTCTAGCTGGTCTTCTAGCTGGTGGTGCACTCCTTGTCTACAACACAAGTGCTTTGTCACAATAG

Protein sequence

>Msa0212950

MASSVMASVSLKPTPFRVEKSSVRGLPTLSRPFKVVASGGKKIKTDTPYGTGGGMALPDGKDASGRKQKGKGVYQFVDKYGANVDGYSPIYDPKDWSPTGDVYTGGPTGLAIWAVTLAGLLAGGALLVYNTSALSQ*