AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1341710


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1341710 MtrunA17_Chr7g0276051 77.358 265 7 3 1 212 1 265 1.63e-136 383
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1341710 AT3G61870.1 70.297 202 35 2 36 212 71 272 3.27e-95 279
Msa1341710 AT3G61870.2 76.667 120 26 1 36 153 71 190 2.74e-63 197

Find 80 sgRNAs with CRISPR-Local

Find 258 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGCTTACCTCAGTAAGTTTC+TGG 0.119805 tig0004834:+5186 None:intergenic
CAGAGCAATGTGAAGATTTC+TGG 0.157106 tig0004834:+3569 None:intergenic
TACTCTATATGCTGGCTATT+TGG 0.163712 tig0004834:-5342 Msa1341710:CDS
ACTCTATATGCTGGCTATTT+GGG 0.167865 tig0004834:-5341 Msa1341710:CDS
CTTGGTTTAGGTTTGATTAA+AGG 0.236613 tig0004834:-2802 Msa1341710:intron
AATGCTGGATCCATACTTCT+AGG 0.237863 tig0004834:-4818 Msa1341710:CDS
GGGAGGGACAATATTGAATT+TGG 0.249343 tig0004834:+5639 None:intergenic
CTTGCTGTTGGTGGAGAGTT+TGG 0.257500 tig0004834:-5428 Msa1341710:CDS
CTACAGGCATTACCGTCTTA+TGG 0.261340 tig0004834:-3641 Msa1341710:intron
TTGGTTTAGGTTTGATTAAA+GGG 0.300921 tig0004834:-2801 Msa1341710:intron
TGATCAACGGAAAATATCTA+AGG 0.322176 tig0004834:+2592 None:intergenic
GGATCCATACTTCTAGGATT+TGG 0.333492 tig0004834:-4812 Msa1341710:CDS
GACACCAAATCCTAGAAGTA+TGG 0.335633 tig0004834:+4808 None:intergenic
GGTGGCAATGGCGCCGAGTT+AGG 0.351922 tig0004834:-5319 Msa1341710:CDS
TTCTGGATTTGAAGTTCAAC+AGG 0.366516 tig0004834:+5203 None:intergenic
CCACTGGACTTGATATTGTA+TGG 0.370736 tig0004834:-3509 Msa1341710:CDS
TTGCTGTTGGTGGAGAGTTT+GGG 0.379213 tig0004834:-5427 Msa1341710:CDS
TACAGGCATTACCGTCTTAT+GGG 0.383650 tig0004834:-3640 Msa1341710:intron
AAATGCATCATATATATTCA+TGG 0.389220 tig0004834:-2531 Msa1341710:three_prime_UTR
CCATCAGGGGCGACCGGTGC+AGG 0.389468 tig0004834:+5254 None:intergenic
CTCATTCACCCCATTGTGTT+GGG 0.394218 tig0004834:-5380 Msa1341710:CDS
TCTAGGATTTGGTGTCTTTG+AGG 0.397090 tig0004834:-4801 Msa1341710:CDS
CCAACCTCATTAATGTATCT+TGG 0.399710 tig0004834:-2663 Msa1341710:three_prime_UTR
GTTTCAAGTGCTTTACCATC+AGG 0.409813 tig0004834:+5239 None:intergenic
AAGTGTTTGAGTTCACAAAA+TGG 0.411552 tig0004834:-3485 Msa1341710:CDS
TTCTTCTATACTCTATATGC+TGG 0.412278 tig0004834:-5350 Msa1341710:CDS
AACAAACCACCCAACACAAT+GGG 0.420393 tig0004834:+5371 None:intergenic
CCAAGATACATTAATGAGGT+TGG 0.420787 tig0004834:+2663 None:intergenic
GGAGAGTTTGGGATATTTGA+AGG 0.424876 tig0004834:-5416 Msa1341710:CDS
CAAGAGGCAAGCCTTAAAAC+AGG 0.431482 tig0004834:+2722 None:intergenic
GTTTCACTGCCTTTCTGCAT+CGG 0.434740 tig0004834:+3594 None:intergenic
CAAGATACATTAATGAGGTT+GGG 0.443778 tig0004834:+2664 None:intergenic
AGCTTATCAAAGGTTCATAC+AGG 0.459882 tig0004834:-4853 Msa1341710:CDS
GGGACAATATTGAATTTGGA+TGG 0.460106 tig0004834:+5643 None:intergenic
TTTGGTGTCTTTGAGGCTGT+TGG 0.460543 tig0004834:-4794 Msa1341710:intron
TTTGTGTGGCAGATTCCCAC+TGG 0.462816 tig0004834:-3525 Msa1341710:CDS
GTTTGATTAAAGGGACATCA+TGG 0.474909 tig0004834:-2792 Msa1341710:three_prime_UTR
TTAAAGGGACATCATGGATC+CGG 0.474966 tig0004834:-2786 Msa1341710:three_prime_UTR
TCTCATTCACCCCATTGTGT+TGG 0.487054 tig0004834:-5381 Msa1341710:CDS
TGTCTTGATGCTTGAAAGAA+TGG 0.487965 tig0004834:+5699 None:intergenic
CTGGCTATTTGGGGTGGCAA+TGG 0.493451 tig0004834:-5331 Msa1341710:CDS
AACTGAGAGCTAAGTAAAGA+AGG 0.498417 tig0004834:+2619 None:intergenic
CAGGATGCACTTGCTGTTGG+TGG 0.511437 tig0004834:-5437 Msa1341710:CDS
CCTGCACCGGTCGCCCCTGA+TGG 0.520003 tig0004834:-5254 Msa1341710:CDS
CTCTATCATTGAACTCGACC+CGG 0.522465 tig0004834:+2767 None:intergenic
GCTTTACCATCAGGGGCGAC+CGG 0.523702 tig0004834:+5248 None:intergenic
ATTCACCCCATTGTGTTGGG+TGG 0.524385 tig0004834:-5377 Msa1341710:CDS
AGGGATAAACACTTTAATGC+TGG 0.528614 tig0004834:-4833 Msa1341710:CDS
CTCTATATGCTGGCTATTTG+GGG 0.531439 tig0004834:-5340 Msa1341710:CDS
CATTACCGTCTTATGGGCAC+TGG 0.546801 tig0004834:-3634 Msa1341710:CDS
TTCAAGTGCTTTACCATCAG+GGG 0.547033 tig0004834:+5241 None:intergenic
AACAGCAAGTTTGTGATCAA+CGG 0.547060 tig0004834:+2579 None:intergenic
ATATTGAATTTGGATGGAAG+TGG 0.548645 tig0004834:+5649 None:intergenic
ATTTGAAGTTCAACAGGTGA+TGG 0.552879 tig0004834:+5209 None:intergenic
TGAATGTTCTTCTCTTTGTG+TGG 0.562680 tig0004834:-3539 Msa1341710:CDS
TTTCAAGTGCTTTACCATCA+GGG 0.566094 tig0004834:+5240 None:intergenic
ATATGAGAATCATACATTCA+AGG 0.567075 tig0004834:+3462 None:intergenic
TAAAGGGACATCATGGATCC+GGG 0.567503 tig0004834:-2785 Msa1341710:three_prime_UTR
CTTACTCAAATGTACACAAG+AGG 0.568695 tig0004834:+2706 None:intergenic
GAGAGGAAAGAGCTTATCAA+AGG 0.578252 tig0004834:-4863 Msa1341710:CDS
GAAACAACTCAAACCTGCAC+CGG 0.583822 tig0004834:-5267 Msa1341710:CDS
GAACAAACCACCCAACACAA+TGG 0.584006 tig0004834:+5370 None:intergenic
TCTTCCAAGATACATTAATG+AGG 0.586730 tig0004834:+2659 None:intergenic
TGCTGCCAGTGCCCATAAGA+CGG 0.586926 tig0004834:+3629 None:intergenic
GTTCAATGATAGAGATGAGA+CGG 0.590996 tig0004834:-2758 Msa1341710:three_prime_UTR
TCACTGCCTTTCTGCATCGG+TGG 0.596727 tig0004834:+3597 None:intergenic
CTAGTACCACCGATGCAGAA+AGG 0.597429 tig0004834:-3603 Msa1341710:CDS
GTCTTGATGCTTGAAAGAAT+GGG 0.604119 tig0004834:+5700 None:intergenic
AAACAGGATGCACTTGCTGT+TGG 0.612832 tig0004834:-5440 Msa1341710:intron
CCATACAATATCAAGTCCAG+TGG 0.632516 tig0004834:+3509 None:intergenic
TGAAGTTCAACAGGTGATGG+CGG 0.633139 tig0004834:+5212 None:intergenic
AAGCTTGACAAGACTGAGTG+TGG 0.639748 tig0004834:+5723 None:intergenic
AAGAGGCAAGCCTTAAAACA+GGG 0.652409 tig0004834:+2723 None:intergenic
TATATGCTGGCTATTTGGGG+TGG 0.656872 tig0004834:-5337 Msa1341710:CDS
CATACAATATCAAGTCCAGT+GGG 0.666329 tig0004834:+3510 None:intergenic
GCTTATCAAAGGTTCATACA+GGG 0.677877 tig0004834:-4852 Msa1341710:CDS
CTTGACAAGACTGAGTGTGG+AGG 0.697793 tig0004834:+5726 None:intergenic
AGAGGCAAGCCTTAAAACAG+GGG 0.702527 tig0004834:+2724 None:intergenic
ACAAACCACCCAACACAATG+GGG 0.717466 tig0004834:+5372 None:intergenic
TCAAATCCAGAAACTTACTG+AGG 0.721925 tig0004834:-5192 Msa1341710:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATTATTTTTTTGTGATGTA+AGG - tig0004834:3147-3166 Msa1341710:intron 15.0%
!! AAAAGAGTAAAGAATAGAAT+AGG + tig0004834:2759-2778 None:intergenic 20.0%
!! TTTATTTAACAGAAGCAAAA+AGG + tig0004834:3675-3694 None:intergenic 20.0%
!!! CACATAAAATATTAGTTTGT+TGG + tig0004834:4459-4478 None:intergenic 20.0%
!!! AACTAATATTTTATGTGATC+CGG - tig0004834:4462-4481 Msa1341710:intron 20.0%
!!! TAAAGAAAATTGATAACACT+TGG - tig0004834:4578-4597 Msa1341710:intron 20.0%
!! TTTACTTTCAAATCAGTATT+TGG - tig0004834:4834-4853 Msa1341710:CDS 20.0%
!! TACTACATTATACAAAAGAA+TGG + tig0004834:4954-4973 None:intergenic 20.0%
!! ACGTTCAAATTATTACATAA+AGG - tig0004834:4989-5008 Msa1341710:intron 20.0%
!! CAAATTATTACATAAAGGAA+TGG - tig0004834:4994-5013 Msa1341710:intron 20.0%
!! CAATTGTTTAGAAATATTGT+TGG - tig0004834:5042-5061 Msa1341710:intron 20.0%
!! AATTTAGATTAAATCAAGCA+AGG - tig0004834:5075-5094 Msa1341710:intron 20.0%
!!! TATGTTTTAGACGTAAATAA+AGG - tig0004834:5225-5244 Msa1341710:CDS 20.0%
!! AAATTAAAACAAAGTTGAAG+TGG + tig0004834:5396-5415 None:intergenic 20.0%
!! TTAATTTCTTTCATGAAACA+AGG - tig0004834:5409-5428 Msa1341710:CDS 20.0%
!! AAATGCATCATATATATTCA+TGG - tig0004834:5722-5741 Msa1341710:CDS 20.0%
! ATCTAATGAAAACTTTAGTG+GGG + tig0004834:2641-2660 None:intergenic 25.0%
! GATCTAATGAAAACTTTAGT+GGG + tig0004834:2642-2661 None:intergenic 25.0%
! TGATCTAATGAAAACTTTAG+TGG + tig0004834:2643-2662 None:intergenic 25.0%
! AATCACATTTCCATTCTTAT+TGG - tig0004834:2705-2724 Msa1341710:three_prime_UTR 25.0%
! TTTCAACAACATTCATATCA+TGG + tig0004834:2796-2815 None:intergenic 25.0%
! AGCATGCAATAATACATAAA+GGG + tig0004834:3102-3121 None:intergenic 25.0%
! AAGCATGCAATAATACATAA+AGG + tig0004834:3103-3122 None:intergenic 25.0%
! CAAACTTAGTATTAAAATCC+AGG + tig0004834:3293-3312 None:intergenic 25.0%
!! AATTTGCTCTTGAATCAAAT+GGG + tig0004834:3567-3586 None:intergenic 25.0%
!!! TAATTTGCTCTTGAATCAAA+TGG + tig0004834:3568-3587 None:intergenic 25.0%
! AAGTACATTTAGAAAACAGA+GGG + tig0004834:3632-3651 None:intergenic 25.0%
! TAAGTACATTTAGAAAACAG+AGG + tig0004834:3633-3652 None:intergenic 25.0%
!!! CACAAACTTGTTAAATCTTA+AGG - tig0004834:3877-3896 Msa1341710:intron 25.0%
! ACATAGATGAACTTATTAGT+GGG - tig0004834:3910-3929 Msa1341710:intron 25.0%
!!! TGATTATCACTTTTCTGAAT+GGG + tig0004834:4058-4077 None:intergenic 25.0%
!!! TTGATTATCACTTTTCTGAA+TGG + tig0004834:4059-4078 None:intergenic 25.0%
! TCACATTGAGAGAAAAATAA+GGG - tig0004834:4210-4229 Msa1341710:intron 25.0%
! AATAGGGGTTACTTAAAATT+CGG + tig0004834:4363-4382 None:intergenic 25.0%
!! ACTAATATTTTATGTGATCC+GGG - tig0004834:4463-4482 Msa1341710:intron 25.0%
! ATATGAGAATCATACATTCA+AGG + tig0004834:4794-4813 None:intergenic 25.0%
! GATTTGAAAGTAAAATACCT+GGG + tig0004834:4828-4847 None:intergenic 25.0%
! TGATTTGAAAGTAAAATACC+TGG + tig0004834:4829-4848 None:intergenic 25.0%
! ATGTATTATGTATGAGGATT+CGG - tig0004834:5305-5324 Msa1341710:CDS 25.0%
! AAACCTAAACCAAGTTATTA+AGG + tig0004834:5445-5464 None:intergenic 25.0%
!! TTGGTTTAGGTTTGATTAAA+GGG - tig0004834:5452-5471 Msa1341710:intron 25.0%
ATATTGAATTTGGATGGAAG+TGG + tig0004834:2607-2626 None:intergenic 30.0%
ACAACATTCATATCATGGAT+TGG + tig0004834:2791-2810 None:intergenic 30.0%
GATATGAATGTTGTTGAAAC+AGG - tig0004834:2797-2816 Msa1341710:intron 30.0%
TTCTTCTATACTCTATATGC+TGG - tig0004834:2903-2922 Msa1341710:intron 30.0%
! CATTTTGAATAGTCCTAACT+CGG + tig0004834:2950-2969 None:intergenic 30.0%
ATGTATTATTGCATGCTTCT+TGG - tig0004834:3105-3124 Msa1341710:intron 30.0%
! TTTGTGATGTAAGGACTTTT+CGG - tig0004834:3156-3175 Msa1341710:intron 30.0%
AGTGGTAGTTTCATTAACTA+TGG - tig0004834:3264-3283 Msa1341710:intron 30.0%
TTTCATTAACTATGGTATCC+TGG - tig0004834:3272-3291 Msa1341710:intron 30.0%
CTAAGTTTGTAATTAGTGAG+AGG - tig0004834:3304-3323 Msa1341710:intron 30.0%
GCTGTTTAAAAATGCATCAA+GGG + tig0004834:3600-3619 None:intergenic 30.0%
! TGCTGTTTAAAAATGCATCA+AGG + tig0004834:3601-3620 None:intergenic 30.0%
AGTACATTTAGAAAACAGAG+GGG + tig0004834:3631-3650 None:intergenic 30.0%
!! AAAAAGGTGTTACCTGTAAA+TGG + tig0004834:3659-3678 None:intergenic 30.0%
GATGACAGGGTATAAATTTA+GGG + tig0004834:3705-3724 None:intergenic 30.0%
AGATGACAGGGTATAAATTT+AGG + tig0004834:3706-3725 None:intergenic 30.0%
! GACATTTTTACAAGATGACA+GGG + tig0004834:3718-3737 None:intergenic 30.0%
! AGACATTTTTACAAGATGAC+AGG + tig0004834:3719-3738 None:intergenic 30.0%
! ACAATTTGTTCAAACGTTCA+AGG + tig0004834:3835-3854 None:intergenic 30.0%
CACATAGATGAACTTATTAG+TGG - tig0004834:3909-3928 Msa1341710:intron 30.0%
AAAGTAGTAAAGTGAAGGTT+GGG + tig0004834:3966-3985 None:intergenic 30.0%
GATATTAAGAACTTTCTCTC+AGG + tig0004834:4000-4019 None:intergenic 30.0%
ATCCATAACTTGACTAAACA+AGG - tig0004834:4017-4036 Msa1341710:intron 30.0%
TCCATAACTTGACTAAACAA+GGG - tig0004834:4018-4037 Msa1341710:intron 30.0%
GTCACATTGAGAGAAAAATA+AGG - tig0004834:4209-4228 Msa1341710:intron 30.0%
GCATGTACTTAAGAATTAGA+GGG - tig0004834:4239-4258 Msa1341710:intron 30.0%
CATGTACTTAAGAATTAGAG+GGG - tig0004834:4240-4259 Msa1341710:intron 30.0%
ATGTACTTAAGAATTAGAGG+GGG - tig0004834:4241-4260 Msa1341710:intron 30.0%
!! ATTTTGAAAGATCTCAGATG+AGG - tig0004834:4274-4293 Msa1341710:intron 30.0%
! GATGTAATGGAAAGTAGTTA+CGG - tig0004834:4299-4318 Msa1341710:intron 30.0%
!! TACAAAGTGTTGTCAAATAG+TGG - tig0004834:4404-4423 Msa1341710:intron 30.0%
TCTTACCTTTATCCCAAAAT+TGG + tig0004834:4493-4512 None:intergenic 30.0%
TATATTCAATCTGACGAAGT+TGG - tig0004834:4515-4534 Msa1341710:intron 30.0%
ATATTCAATCTGACGAAGTT+GGG - tig0004834:4516-4535 Msa1341710:intron 30.0%
! AAGTGTTTGAGTTCACAAAA+TGG - tig0004834:4768-4787 Msa1341710:intron 30.0%
AGCAAGGTCAAATATTCTAT+AGG - tig0004834:5091-5110 Msa1341710:intron 30.0%
! ATTTTCAACATACAGCTTAC+TGG + tig0004834:5157-5176 None:intergenic 30.0%
GCTGTATGTTGAAAATTTGA+AGG - tig0004834:5161-5180 Msa1341710:intron 30.0%
ATAACCTTACTAAAAGAAGC+TGG - tig0004834:5261-5280 Msa1341710:CDS 30.0%
! CTTTGTTTGAGATATAGAGT+CGG + tig0004834:5364-5383 None:intergenic 30.0%
! CTTGGTTTAGGTTTGATTAA+AGG - tig0004834:5451-5470 Msa1341710:intron 30.0%
CAAGATACATTAATGAGGTT+GGG + tig0004834:5592-5611 None:intergenic 30.0%
TCTTCCAAGATACATTAATG+AGG + tig0004834:5597-5616 None:intergenic 30.0%
TGATCAACGGAAAATATCTA+AGG + tig0004834:5664-5683 None:intergenic 30.0%
GTCTTGATGCTTGAAAGAAT+GGG + tig0004834:2556-2575 None:intergenic 35.0%
TGTCTTGATGCTTGAAAGAA+TGG + tig0004834:2557-2576 None:intergenic 35.0%
!!! CAACATGTTTTGAGGTTGAT+TGG + tig0004834:2582-2601 None:intergenic 35.0%
! AAGTGGAACAACATGTTTTG+AGG + tig0004834:2590-2609 None:intergenic 35.0%
GGGACAATATTGAATTTGGA+TGG + tig0004834:2613-2632 None:intergenic 35.0%
AATGAAAACTTTAGTGGGGT+GGG + tig0004834:2637-2656 None:intergenic 35.0%
TAATGAAAACTTTAGTGGGG+TGG + tig0004834:2638-2657 None:intergenic 35.0%
TCCATTCTTATTGGATACCA+AGG - tig0004834:2714-2733 Msa1341710:three_prime_UTR 35.0%
! TACTCTATATGCTGGCTATT+TGG - tig0004834:2911-2930 Msa1341710:intron 35.0%
! ACTCTATATGCTGGCTATTT+GGG - tig0004834:2912-2931 Msa1341710:intron 35.0%
! TTTCAAGTGCTTTACCATCA+GGG + tig0004834:3016-3035 None:intergenic 35.0%
! ATTTGAAGTTCAACAGGTGA+TGG + tig0004834:3047-3066 None:intergenic 35.0%
! TTCTGGATTTGAAGTTCAAC+AGG + tig0004834:3053-3072 None:intergenic 35.0%
TCAAATCCAGAAACTTACTG+AGG - tig0004834:3061-3080 Msa1341710:intron 35.0%
TATTATTGCATGCTTCTTGG+TGG - tig0004834:3108-3127 Msa1341710:intron 35.0%
! GGACTTTTCGGATTAAGTAA+TGG - tig0004834:3168-3187 Msa1341710:intron 35.0%
TGAAACTACCACTGATAAGA+AGG + tig0004834:3257-3276 None:intergenic 35.0%
! CTGATGAGTACCTAATTTGT+TGG - tig0004834:3349-3368 Msa1341710:intron 35.0%
!! TGAGTACCTAATTTGTTGGT+TGG - tig0004834:3353-3372 Msa1341710:intron 35.0%
CAGTAACCAACCAACAAATT+AGG + tig0004834:3362-3381 None:intergenic 35.0%
! TTGGTTGGTTACTGATATTC+AGG - tig0004834:3368-3387 Msa1341710:intron 35.0%
AGCTTATCAAAGGTTCATAC+AGG - tig0004834:3400-3419 Msa1341710:intron 35.0%
GCTTATCAAAGGTTCATACA+GGG - tig0004834:3401-3420 Msa1341710:intron 35.0%
AGGGATAAACACTTTAATGC+TGG - tig0004834:3420-3439 Msa1341710:intron 35.0%
GTTTAAAAATGCATCAAGGG+AGG + tig0004834:3597-3616 None:intergenic 35.0%
GTACATTTAGAAAACAGAGG+GGG + tig0004834:3630-3649 None:intergenic 35.0%
ATGTACTTACCTCCATTTAC+AGG - tig0004834:3644-3663 Msa1341710:intron 35.0%
AGCTCCTTCTAGATTAAGTA+CGG + tig0004834:3771-3790 None:intergenic 35.0%
! AGATGAACTTATTAGTGGGT+TGG - tig0004834:3914-3933 Msa1341710:intron 35.0%
!!! GTTGGGAGTTTTAAGTAACA+TGG + tig0004834:3949-3968 None:intergenic 35.0%
CAAAGTAGTAAAGTGAAGGT+TGG + tig0004834:3967-3986 None:intergenic 35.0%
GCATCAAAGTAGTAAAGTGA+AGG + tig0004834:3971-3990 None:intergenic 35.0%
AGAACTTTCTCTCAGGTTTA+AGG + tig0004834:3993-4012 None:intergenic 35.0%
CCATAACTTGACTAAACAAG+GGG - tig0004834:4019-4038 Msa1341710:intron 35.0%
CATAACTTGACTAAACAAGG+GGG - tig0004834:4020-4039 Msa1341710:intron 35.0%
TGTGAATTGAGAGAGATTAC+AGG - tig0004834:4152-4171 Msa1341710:intron 35.0%
GTGAATTGAGAGAGATTACA+GGG - tig0004834:4153-4172 Msa1341710:intron 35.0%
TGAATTGAGAGAGATTACAG+GGG - tig0004834:4154-4173 Msa1341710:intron 35.0%
! ATTAACGGTGTTAGAGGAAA+AGG - tig0004834:4177-4196 Msa1341710:intron 35.0%
! TTAACGGTGTTAGAGGAAAA+GGG - tig0004834:4178-4197 Msa1341710:intron 35.0%
CATTGAGAGAAAAATAAGGG+AGG - tig0004834:4213-4232 Msa1341710:intron 35.0%
CGCATGTACTTAAGAATTAG+AGG - tig0004834:4238-4257 Msa1341710:intron 35.0%
TCGAGTATCTCTGAACAATA+GGG + tig0004834:4379-4398 None:intergenic 35.0%
ATCGAGTATCTCTGAACAAT+AGG + tig0004834:4380-4399 None:intergenic 35.0%
TGGCAATAACAATGCTATAG+CGG - tig0004834:4424-4443 Msa1341710:intron 35.0%
!!! GATTGCCAATTTTGGGATAA+AGG - tig0004834:4485-4504 Msa1341710:intron 35.0%
! CTTGGATAATTTTTCCCTAC+AGG - tig0004834:4596-4615 Msa1341710:intron 35.0%
TGAATGTTCTTCTCTTTGTG+TGG - tig0004834:4714-4733 Msa1341710:intron 35.0%
CATACAATATCAAGTCCAGT+GGG + tig0004834:4746-4765 None:intergenic 35.0%
TCATATGTAAGTAAGTTCCC+AGG - tig0004834:4808-4827 Msa1341710:CDS 35.0%
CAATTATGTTACGAGGTCAA+AGG + tig0004834:4898-4917 None:intergenic 35.0%
! AGCTACATGATTTTGCATGT+AGG - tig0004834:5201-5220 Msa1341710:CDS 35.0%
! TTGTCCAGCTTCTTTTAGTA+AGG + tig0004834:5268-5287 None:intergenic 35.0%
GCATGCATGTATTATGTATG+AGG - tig0004834:5299-5318 Msa1341710:CDS 35.0%
TAGACACGACCTTAATAACT+TGG - tig0004834:5433-5452 Msa1341710:CDS 35.0%
CGACCTTAATAACTTGGTTT+AGG - tig0004834:5439-5458 Msa1341710:intron 35.0%
GTTTGATTAAAGGGACATCA+TGG - tig0004834:5461-5480 Msa1341710:intron 35.0%
GTTCAATGATAGAGATGAGA+CGG - tig0004834:5495-5514 Msa1341710:intron 35.0%
CTTACTCAAATGTACACAAG+AGG + tig0004834:5550-5569 None:intergenic 35.0%
CCAAGATACATTAATGAGGT+TGG + tig0004834:5593-5612 None:intergenic 35.0%
CCAACCTCATTAATGTATCT+TGG - tig0004834:5590-5609 Msa1341710:intron 35.0%
AACTGAGAGCTAAGTAAAGA+AGG + tig0004834:5637-5656 None:intergenic 35.0%
AACAGCAAGTTTGTGATCAA+CGG + tig0004834:5677-5696 None:intergenic 35.0%
GGGAGGGACAATATTGAATT+TGG + tig0004834:2617-2636 None:intergenic 40.0%
TGGAAATGTGATTGCTGTGA+GGG + tig0004834:2698-2717 None:intergenic 40.0%
ATGGAAATGTGATTGCTGTG+AGG + tig0004834:2699-2718 None:intergenic 40.0%
GCCTTGGTATCCAATAAGAA+TGG + tig0004834:2718-2737 None:intergenic 40.0%
! GGAGAGTTTGGGATATTTGA+AGG - tig0004834:2837-2856 Msa1341710:intron 40.0%
AACAAACCACCCAACACAAT+GGG + tig0004834:2885-2904 None:intergenic 40.0%
! CTCTATATGCTGGCTATTTG+GGG - tig0004834:2913-2932 Msa1341710:intron 40.0%
TTCAAGTGCTTTACCATCAG+GGG + tig0004834:3015-3034 None:intergenic 40.0%
! GTTTCAAGTGCTTTACCATC+AGG + tig0004834:3017-3036 None:intergenic 40.0%
TGCTTACCTCAGTAAGTTTC+TGG + tig0004834:3070-3089 None:intergenic 40.0%
AGTACAAGCCTTCTTATCAG+TGG - tig0004834:3246-3265 Msa1341710:intron 40.0%
TGGTTACTGATATTCAGGAG+AGG - tig0004834:3373-3392 Msa1341710:intron 40.0%
GAGAGGAAAGAGCTTATCAA+AGG - tig0004834:3390-3409 Msa1341710:intron 40.0%
AATGCTGGATCCATACTTCT+AGG - tig0004834:3435-3454 Msa1341710:intron 40.0%
!! GGATCCATACTTCTAGGATT+TGG - tig0004834:3441-3460 Msa1341710:intron 40.0%
GACACCAAATCCTAGAAGTA+TGG + tig0004834:3448-3467 None:intergenic 40.0%
!! TCTAGGATTTGGTGTCTTTG+AGG - tig0004834:3452-3471 Msa1341710:intron 40.0%
! AAGGTGTTACCTGTAAATGG+AGG + tig0004834:3656-3675 None:intergenic 40.0%
TCTAGATTAAGTACGGCCAA+TGG + tig0004834:3764-3783 None:intergenic 40.0%
TTGGCCGTACTTAATCTAGA+AGG - tig0004834:3764-3783 Msa1341710:intron 40.0%
TTGACGAACATTCTACCTGT+CGG + tig0004834:3810-3829 None:intergenic 40.0%
! CCCCTTGTTTAGTCAAGTTA+TGG + tig0004834:4022-4041 None:intergenic 40.0%
AAAACTTCAAGCCATGTGCA+CGG - tig0004834:4083-4102 Msa1341710:intron 40.0%
! TTTTGATACTTCCGTGCACA+TGG + tig0004834:4097-4116 None:intergenic 40.0%
GAGAGATTACAGGGGATTAA+CGG - tig0004834:4162-4181 Msa1341710:intron 40.0%
CGAGTATCTCTGAACAATAG+GGG + tig0004834:4378-4397 None:intergenic 40.0%
TATCCCAAAATTGGCAATCC+CGG + tig0004834:4484-4503 None:intergenic 40.0%
ATCTTTGTAGCTCTCTGAGT+TGG - tig0004834:4540-4559 Msa1341710:intron 40.0%
TCTTTGTAGCTCTCTGAGTT+GGG - tig0004834:4541-4560 Msa1341710:intron 40.0%
! CTCTGAGTTGGGAATTGTAT+TGG - tig0004834:4552-4571 Msa1341710:intron 40.0%
ATAAGACGGTAATGCCTGTA+GGG + tig0004834:4613-4632 None:intergenic 40.0%
TACAGGCATTACCGTCTTAT+GGG - tig0004834:4613-4632 Msa1341710:intron 40.0%
CAGAGCAATGTGAAGATTTC+TGG + tig0004834:4687-4706 None:intergenic 40.0%
CCATACAATATCAAGTCCAG+TGG + tig0004834:4747-4766 None:intergenic 40.0%
CCACTGGACTTGATATTGTA+TGG - tig0004834:4744-4763 Msa1341710:intron 40.0%
TGACACGCAATTATGTTACG+AGG + tig0004834:4905-4924 None:intergenic 40.0%
CAATTGCCTACCAAATGACA+AGG + tig0004834:5028-5047 None:intergenic 40.0%
TGAGATATAGAGTCGGAGAT+GGG + tig0004834:5357-5376 None:intergenic 40.0%
TTGAGATATAGAGTCGGAGA+TGG + tig0004834:5358-5377 None:intergenic 40.0%
TTAAAGGGACATCATGGATC+CGG - tig0004834:5467-5486 Msa1341710:intron 40.0%
AAGAGGCAAGCCTTAAAACA+GGG + tig0004834:5533-5552 None:intergenic 40.0%
AAGCTTGACAAGACTGAGTG+TGG + tig0004834:2533-2552 None:intergenic 45.0%
AAAACTTTAGTGGGGTGGGA+GGG + tig0004834:2633-2652 None:intergenic 45.0%
!! AAACAGGATGCACTTGCTGT+TGG - tig0004834:2813-2832 Msa1341710:intron 45.0%
! TTGCTGTTGGTGGAGAGTTT+GGG - tig0004834:2826-2845 Msa1341710:intron 45.0%
TCTCATTCACCCCATTGTGT+TGG - tig0004834:2872-2891 Msa1341710:intron 45.0%
CTCATTCACCCCATTGTGTT+GGG - tig0004834:2873-2892 Msa1341710:intron 45.0%
ACAAACCACCCAACACAATG+GGG + tig0004834:2884-2903 None:intergenic 45.0%
GAACAAACCACCCAACACAA+TGG + tig0004834:2886-2905 None:intergenic 45.0%
! TATATGCTGGCTATTTGGGG+TGG - tig0004834:2916-2935 Msa1341710:intron 45.0%
GAAACAACTCAAACCTGCAC+CGG - tig0004834:2986-3005 Msa1341710:intron 45.0%
! TGAAGTTCAACAGGTGATGG+CGG + tig0004834:3044-3063 None:intergenic 45.0%
!! TTTGGTGTCTTTGAGGCTGT+TGG - tig0004834:3459-3478 Msa1341710:intron 45.0%
GAGGACTCAACACATGGTTA+AGG - tig0004834:3484-3503 Msa1341710:CDS 45.0%
CTCAACACATGGTTAAGGAC+AGG - tig0004834:3489-3508 Msa1341710:CDS 45.0%
! AGGACAGGAAAGCTATTTCC+AGG - tig0004834:3504-3523 Msa1341710:CDS 45.0%
CCTGCAAATAAATGTGGACC+TGG + tig0004834:3525-3544 None:intergenic 45.0%
CCAGGTCCACATTTATTTGC+AGG - tig0004834:3522-3541 Msa1341710:CDS 45.0%
CCTGCTCCTGCAAATAAATG+TGG + tig0004834:3531-3550 None:intergenic 45.0%
CCACATTTATTTGCAGGAGC+AGG - tig0004834:3528-3547 Msa1341710:CDS 45.0%
!! CCTGTCGGTTTCAAACTCTT+GGG + tig0004834:3795-3814 None:intergenic 45.0%
!! ACCTGTCGGTTTCAAACTCT+TGG + tig0004834:3796-3815 None:intergenic 45.0%
CACAATCATAACCCCCACTT+TGG + tig0004834:4136-4155 None:intergenic 45.0%
CTCAGATGAGGTCGATGTAA+TGG - tig0004834:4286-4305 Msa1341710:intron 45.0%
! TGATCCGGGATTGCCAATTT+TGG - tig0004834:4477-4496 Msa1341710:intron 45.0%
! GATCCGGGATTGCCAATTTT+GGG - tig0004834:4478-4497 Msa1341710:intron 45.0%
CATAAGACGGTAATGCCTGT+AGG + tig0004834:4614-4633 None:intergenic 45.0%
CTACAGGCATTACCGTCTTA+TGG - tig0004834:4612-4631 Msa1341710:intron 45.0%
GTTTCACTGCCTTTCTGCAT+CGG + tig0004834:4662-4681 None:intergenic 45.0%
! CTAGCACCTTGTCATTTGGT+AGG - tig0004834:5019-5038 Msa1341710:intron 45.0%
! ATAGAGTCGGAGATGGGTTT+GGG + tig0004834:5351-5370 None:intergenic 45.0%
! TATAGAGTCGGAGATGGGTT+TGG + tig0004834:5352-5371 None:intergenic 45.0%
TAAAGGGACATCATGGATCC+GGG - tig0004834:5468-5487 Msa1341710:intron 45.0%
CTCTATCATTGAACTCGACC+CGG + tig0004834:5489-5508 None:intergenic 45.0%
! TGTGTGCATCCCCTGTTTTA+AGG - tig0004834:5520-5539 Msa1341710:intron 45.0%
AGAGGCAAGCCTTAAAACAG+GGG + tig0004834:5532-5551 None:intergenic 45.0%
CAAGAGGCAAGCCTTAAAAC+AGG + tig0004834:5534-5553 None:intergenic 45.0%
CTTGACAAGACTGAGTGTGG+AGG + tig0004834:2530-2549 None:intergenic 50.0%
GAAAACTTTAGTGGGGTGGG+AGG + tig0004834:2634-2653 None:intergenic 50.0%
!! CTTGCTGTTGGTGGAGAGTT+TGG - tig0004834:2825-2844 Msa1341710:intron 50.0%
ATTCACCCCATTGTGTTGGG+TGG - tig0004834:2876-2895 Msa1341710:intron 50.0%
TTGGTGGAGGACTCAACACA+TGG - tig0004834:3478-3497 Msa1341710:exon 50.0%
AATGGTGACCGTGGCACTTT+GGG + tig0004834:3746-3765 None:intergenic 50.0%
! CCCAAGAGTTTGAAACCGAC+AGG - tig0004834:3792-3811 Msa1341710:intron 50.0%
ACTTTGGCGCACACAGAGAA+AGG + tig0004834:4120-4139 None:intergenic 50.0%
TTTCTCTGTGTGCGCCAAAG+TGG - tig0004834:4119-4138 Msa1341710:intron 50.0%
TTCTCTGTGTGCGCCAAAGT+GGG - tig0004834:4120-4139 Msa1341710:intron 50.0%
! CAGGGGATTAACGGTGTTAG+AGG - tig0004834:4171-4190 Msa1341710:intron 50.0%
! ACGGTGTTAGAGGAAAAGGG+AGG - tig0004834:4181-4200 Msa1341710:intron 50.0%
CATTACCGTCTTATGGGCAC+TGG - tig0004834:4619-4638 Msa1341710:intron 50.0%
CTAGTACCACCGATGCAGAA+AGG - tig0004834:4650-4669 Msa1341710:intron 50.0%
TTTGTGTGGCAGATTCCCAC+TGG - tig0004834:4728-4747 Msa1341710:intron 50.0%
GGTGCTAGCACCTTGTCATT+TGG - tig0004834:5015-5034 Msa1341710:intron 50.0%
GCTTGCTTGCTTGCTTGCCT+TGG + tig0004834:2734-2753 None:intergenic 55.0%
!! CAGGATGCACTTGCTGTTGG+TGG - tig0004834:2816-2835 Msa1341710:intron 55.0%
! CTGGCTATTTGGGGTGGCAA+TGG - tig0004834:2922-2941 Msa1341710:intron 55.0%
!! GGTGTCTTTGAGGCTGTTGG+TGG - tig0004834:3462-3481 Msa1341710:exon 55.0%
!! GTCTTTGAGGCTGTTGGTGG+AGG - tig0004834:3465-3484 Msa1341710:exon 55.0%
! GTCTTCGTCCCAAAGTGCCA+CGG - tig0004834:3735-3754 Msa1341710:intron 55.0%
CAATGGTGACCGTGGCACTT+TGG + tig0004834:3747-3766 None:intergenic 55.0%
! CAAAGTGCCACGGTCACCAT+TGG - tig0004834:3745-3764 Msa1341710:intron 55.0%
TCTCTGTGTGCGCCAAAGTG+GGG - tig0004834:4121-4140 Msa1341710:intron 55.0%
TGCTGCCAGTGCCCATAAGA+CGG + tig0004834:4627-4646 None:intergenic 55.0%
TCACTGCCTTTCTGCATCGG+TGG + tig0004834:4659-4678 None:intergenic 55.0%
GCTTTACCATCAGGGGCGAC+CGG + tig0004834:3008-3027 None:intergenic 60.0%
AGTACGGCCAATGGTGACCG+TGG + tig0004834:3755-3774 None:intergenic 60.0%
CTCTGTGTGCGCCAAAGTGG+GGG - tig0004834:4122-4141 Msa1341710:intron 60.0%
! GGTGGCAATGGCGCCGAGTT+AGG - tig0004834:2934-2953 Msa1341710:intron 65.0%
CCATCAGGGGCGACCGGTGC+AGG + tig0004834:3002-3021 None:intergenic 75.0%
! CCTGCACCGGTCGCCCCTGA+TGG - tig0004834:2999-3018 Msa1341710:intron 75.0%
Chromosome Type Strat End Strand Name
tig0004834 gene 2523 5752 2523 ID=Msa1341710;Name=Msa1341710
tig0004834 mRNA 2523 5752 2523 ID=Msa1341710-mRNA-1;Parent=Msa1341710;Name=Msa1341710-mRNA-1;_AED=0.14;_eAED=0.14;_QI=0|0.5|0.6|1|0.75|0.6|5|309|212
tig0004834 exon 2523 2814 2523 ID=Msa1341710-mRNA-1:exon:3300;Parent=Msa1341710-mRNA-1
tig0004834 exon 3462 3657 3462 ID=Msa1341710-mRNA-1:exon:3299;Parent=Msa1341710-mRNA-1
tig0004834 exon 4795 4885 4795 ID=Msa1341710-mRNA-1:exon:3298;Parent=Msa1341710-mRNA-1
tig0004834 exon 5193 5456 5193 ID=Msa1341710-mRNA-1:exon:3297;Parent=Msa1341710-mRNA-1
tig0004834 exon 5648 5752 5648 ID=Msa1341710-mRNA-1:exon:3296;Parent=Msa1341710-mRNA-1
tig0004834 CDS 5648 5752 5648 ID=Msa1341710-mRNA-1:cds;Parent=Msa1341710-mRNA-1
tig0004834 CDS 5193 5456 5193 ID=Msa1341710-mRNA-1:cds;Parent=Msa1341710-mRNA-1
tig0004834 CDS 4795 4885 4795 ID=Msa1341710-mRNA-1:cds;Parent=Msa1341710-mRNA-1
tig0004834 CDS 3479 3657 3479 ID=Msa1341710-mRNA-1:cds;Parent=Msa1341710-mRNA-1
tig0004834 three_prime_UTR 3462 3478 3462 ID=Msa1341710-mRNA-1:three_prime_utr;Parent=Msa1341710-mRNA-1
tig0004834 three_prime_UTR 2523 2814 2523 ID=Msa1341710-mRNA-1:three_prime_utr;Parent=Msa1341710-mRNA-1
Gene Sequence

>Msa1341710

ATGGCCTCCACACTCAGTCTTGTCAAGCTTCCCATTCTTTCAAGCATCAAGACACGCCAATCAACCTCAAAACATGTTGTTCCACTTCCATCCAAATTCAATATTGATGCACTTGCTGTTGGTGGAGAGTTTGGGATATTTGAAGGAAGAACATTTGCTCTCATTCACCCCATTGTGTTGGGTGGTTTGTTCTTCTATACTCTATATGCTGGCTATTTGGGGTGGCAATGGCGCCGAGTTAGGACTATTCAAAATGATATTAATGAGCTCAAGAAACAACTCAAACCTGCACCGGTCGCCCCTGATGGTAAAGCACTTGAAACTTCACCGCCATCACCTGTTGAACTTCAAATCCAGAAACTTACTGAGGAGAGGAAAGAGCTTATCAAAGGTTCATACAGGGATAAACACTTTAATGCTGGATCCATACTTCTAGGATTTGGTGTCTTTGAGGCTGTTGGCATTACCGTCTTATGGGCACTGGCAGCAGCTCTAGTACCACCGATGCAGAAAGGCAGTGAAACAGCCAGAAATCTTCACATTGCTCTGAATACATTGAATGTTCTTCTCTTTGTGTGGCAGATTCCCACTGGACTTGATATTGTATGGAAAGTGTTTGAGTTCACAAAATGGCCTTGA

Protein sequence

>Msa1341710

MASTLSLVKLPILSSIKTRQSTSKHVVPLPSKFNIDALAVGGEFGIFEGRTFALIHPIVLGGLFFYTLYAGYLGWQWRRVRTIQNDINELKKQLKPAPVAPDGKALETSPPSPVELQIQKLTEERKELIKGSYRDKHFNAGSILLGFGVFEAVGITVLWALAAALVPPMQKGSETARNLHIALNTLNVLLFVWQIPTGLDIVWKVFEFTKWP*