AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0116780

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0116780 MtrunA17_Chr1g0173381 98.626 1383 3 1 1 1367 1 1383 0.0 2806
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0116780 AT5G13630.1 84.093 1383 202 2 1 1367 1 1381 0.0 2436
Msa0116780 AT5G13630.2 83.651 1260 188 2 1 1244 1 1258 0.0 2204

Find 329 sgRNAs with CRISPR-Local

Find 463 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTAACCTTGTTCAAAATTTA+AGG 0.029079 1_3:+36147384 Msa0116780:CDS
TTTCCTGTTGGTAAAACTTT+AGG 0.150723 1_3:-36146392 None:intergenic
CCAAGCTCTTCAAGGCTTAC+AGG 0.177877 1_3:-36146662 None:intergenic
CAATCTCTCTACCACTATTT+TGG 0.194233 1_3:-36146471 None:intergenic
CCTATCACCTCGGTAAAATT+TGG 0.197602 1_3:-36146231 None:intergenic
CCACAGCATTAGAAGAAAAT+TGG 0.204481 1_3:+36145214 Msa0116780:CDS
CTCACTGGATTTGCTCTTGT+TGG 0.205906 1_3:+36143465 Msa0116780:CDS
AATTTCTTGAAGATGATTTC+TGG 0.209710 1_3:+36142966 Msa0116780:CDS
CATATCTTTATATATAAAAT+TGG 0.211882 1_3:-36148408 None:intergenic
AGTTGATCAACTTTAGAATT+TGG 0.219361 1_3:-36142228 None:intergenic
TTAGAATTTGGTAGAGTAAA+TGG 0.219936 1_3:-36142216 None:intergenic
TTCCTGTTGGTAAAACTTTA+GGG 0.231681 1_3:-36146391 None:intergenic
TCTAGCCCTCCGGCGAAAAT+TGG 0.232885 1_3:-36143369 None:intergenic
ACAAATGGTTTCTTAGTAAT+AGG 0.269270 1_3:-36143426 None:intergenic
CAAAGGAGTCATATTGTTAC+TGG 0.270706 1_3:+36143185 Msa0116780:CDS
ATGATGAGGGCTTGCAGATT+TGG 0.274240 1_3:-36145367 None:intergenic
AAGAAATTCTGCAAATTATC+AGG 0.274265 1_3:-36142951 None:intergenic
ATATCTTGAGTCTACAGTTT+TGG 0.275285 1_3:+36142916 Msa0116780:CDS
TATAAAATTGGAAGATATAT+TGG 0.277815 1_3:-36148396 None:intergenic
TCTTCTTCAGATGAATCTTC+TGG 0.278031 1_3:+36146977 Msa0116780:intron
CTCATCCCTACCTGCTTTCC+AGG 0.282649 1_3:-36145480 None:intergenic
AAGCCAATGGACGCGGATAT+TGG 0.283143 1_3:+36148079 Msa0116780:CDS
GCTGATGCTGTTCTTCATTT+CGG 0.304689 1_3:+36145432 Msa0116780:CDS
TTGTAAGCAATGTTGAGATT+TGG 0.321057 1_3:-36145153 None:intergenic
GGACAGGTTGGATGCAGTTT+TGG 0.321310 1_3:+36142680 Msa0116780:CDS
TTTCCGATGAGTCAAGGTTT+TGG 0.325504 1_3:-36147319 None:intergenic
AACATGCCTTCATACCATTT+GGG 0.328582 1_3:-36147859 None:intergenic
GGTGATGAGGTTGAACAAAT+TGG 0.329239 1_3:+36142722 Msa0116780:CDS
CAGTGACAAAGGAGTATTAA+AGG 0.335696 1_3:+36146043 Msa0116780:CDS
GCTCAGGTTCTGTGGATGAT+TGG 0.337444 1_3:+36146593 Msa0116780:CDS
AGTGGCAAAGCAACAATATA+AGG 0.338462 1_3:-36143546 None:intergenic
GTTGGATGGAGTGCAACTTC+TGG 0.339333 1_3:+36147934 Msa0116780:CDS
AAGATGAAATCTCTATATAA+TGG 0.339641 1_3:-36148434 None:intergenic
TAACATGCCTTCATACCATT+TGG 0.343041 1_3:-36147860 None:intergenic
CTTCTGGACAAGTTGACAAT+TGG 0.346443 1_3:+36147950 Msa0116780:CDS
CTCATCACCTCAGGCATTGA+TGG 0.348300 1_3:-36142708 None:intergenic
GCATTTGCAACTGCACAAAA+AGG 0.348535 1_3:-36148361 None:intergenic
ACACTCTGAGCTAGTATAGA+AGG 0.354279 1_3:-36145990 None:intergenic
CACAGCATTAGAAGAAAATT+GGG 0.354684 1_3:+36145215 Msa0116780:CDS
CACTGCTGGTTCGTCTAATT+CGG 0.356164 1_3:-36147021 None:intergenic
GAAGATGCTAATATCTTCAT+TGG 0.357021 1_3:+36142597 Msa0116780:CDS
GTTCCTACATTTCCTTTGTC+TGG 0.357797 1_3:-36144985 None:intergenic
GAAGCTGGTGCAAACATTCT+TGG 0.362090 1_3:+36148056 Msa0116780:CDS
TGTAAGCAATGTTGAGATTT+GGG 0.367376 1_3:-36145152 None:intergenic
CACAGCCAGGTTTATGTTTG+AGG 0.367959 1_3:-36147147 None:intergenic
GCACAAATCCCAACTCCTTC+AGG 0.369393 1_3:+36148034 Msa0116780:CDS
ATCGGGTCGCCTCCAGGTCC+TGG 0.370873 1_3:-36146362 None:intergenic
AACCAAGTTTCAGAGAAATA+AGG 0.371756 1_3:-36148229 None:intergenic
TGCATTGCATTTCAATCTAA+AGG 0.373359 1_3:-36142331 None:intergenic
AAATGCACCTGTTGTTGGTT+TGG 0.377667 1_3:+36143157 Msa0116780:CDS
TGTTGGAGGGCCTGCTAGAC+AGG 0.383679 1_3:+36143482 Msa0116780:CDS
GTTCAAAATTTAAGGAAAGA+TGG 0.385666 1_3:+36147392 Msa0116780:CDS
GCAGCATAGTAATAGACATT+TGG 0.387540 1_3:-36145540 None:intergenic
AAACTTTAGGGTTTCTGATC+GGG 0.387766 1_3:-36146379 None:intergenic
GGAGAGAATCTGTTGGTATA+TGG 0.388264 1_3:+36145267 Msa0116780:CDS
TGAATTGGTATGGAACTAGA+AGG 0.388661 1_3:+36143108 Msa0116780:CDS
AACAAGATCTCGCTCTTTAG+TGG 0.389853 1_3:-36145811 None:intergenic
ATAGGTGTTCAACCTACATT+TGG 0.390010 1_3:+36145312 Msa0116780:CDS
TTTCTGATCGGGTCGCCTCC+AGG 0.395290 1_3:-36146368 None:intergenic
TCAACCACTCTTCAGTTGTC+TGG 0.395716 1_3:-36143575 None:intergenic
ACTTGAAGAGCAACTTGAAT+TGG 0.395908 1_3:-36143618 None:intergenic
AGCCAATGGACGCGGATATT+GGG 0.396390 1_3:+36148080 Msa0116780:CDS
CCTAAGAAAACCAATTACTA+TGG 0.396414 1_3:+36142294 Msa0116780:CDS
CTGATACCTGATTGATGAAA+AGG 0.396424 1_3:-36146733 None:intergenic
TTGGTATATGGTAAGCAATA+TGG 0.404856 1_3:+36145279 Msa0116780:CDS
AATTGCTCCGCGTGATGCTT+CGG 0.405221 1_3:-36146090 None:intergenic
TTATATTGTTGCTTTGCCAC+TGG 0.407521 1_3:+36143548 Msa0116780:CDS
CAGGTTTATGTTTGAGGAGT+AGG 0.410638 1_3:-36147141 None:intergenic
ACTGGATTTGCTCTTGTTGG+AGG 0.412121 1_3:+36143468 Msa0116780:CDS
AGTTCAAATGCACCTGTTGT+TGG 0.412786 1_3:+36143152 Msa0116780:CDS
ATCTTTGTACCTTTCAATGC+TGG 0.413975 1_3:-36142999 None:intergenic
GAGTGGTTGAATAGTACTTT+GGG 0.415105 1_3:+36143588 Msa0116780:CDS
AAAGAGCGAGATCTTGTTGT+TGG 0.415342 1_3:+36145816 Msa0116780:CDS
CTGGATTTGCTCTTGTTGGA+GGG 0.415619 1_3:+36143469 Msa0116780:CDS
TAAAGGATGTAGAGCTTCTT+CGG 0.416816 1_3:+36146060 Msa0116780:CDS
CCTTGTGGACTCCATGTCAT+TGG 0.417130 1_3:+36145882 Msa0116780:CDS
CTAGTGGTTATGAGGGTGTT+CGG 0.420010 1_3:+36147884 Msa0116780:CDS
CTTACATAGTTCATCACTGC+TGG 0.423354 1_3:-36147035 None:intergenic
ACCAGCTTCCTGAAGGAGTT+GGG 0.423566 1_3:-36148042 None:intergenic
AGATTGAAATGCAATGCAAT+TGG 0.427450 1_3:+36142336 Msa0116780:CDS
AAGAAGAATACTTCTTCAGC+TGG 0.430435 1_3:+36142804 Msa0116780:CDS
CAATATGGTAATGTATTCAT+AGG 0.430782 1_3:+36145294 Msa0116780:CDS
GCTTTCCAGGCATGAATTCA+AGG 0.431681 1_3:-36145467 None:intergenic
AAAGAGTATTTGAATTGGTA+TGG 0.436541 1_3:+36143098 Msa0116780:CDS
GGAAGCTCCACACCCTCCTC+TGG 0.436994 1_3:-36145789 None:intergenic
AGTACAAGGGCAACTGTCTC+AGG 0.436994 1_3:-36146530 None:intergenic
GATTGTGATGCTCCTGGTGC+AGG 0.439076 1_3:+36147239 Msa0116780:CDS
TAGGTCTTCCAAGCTCTTCA+AGG 0.440235 1_3:-36146670 None:intergenic
TGGCTGTGGAGAATTCTTCA+TGG 0.440253 1_3:+36147162 Msa0116780:CDS
CGAAAATGCAGGACTGTACA+AGG 0.441945 1_3:+36145638 Msa0116780:CDS
CACCAGCTTCCTGAAGGAGT+TGG 0.442281 1_3:-36148043 None:intergenic
CTCTACAAATTTACCTTCCA+AGG 0.442552 1_3:-36146339 None:intergenic
TGGAGGAGTAAGATAGCTTA+TGG 0.442966 1_3:-36145613 None:intergenic
TAGTGGTTATGAGGGTGTTC+GGG 0.443943 1_3:+36147885 Msa0116780:CDS
TTCTGCTAAGGTACATGTCT+TGG 0.445406 1_3:-36147202 None:intergenic
TTGGCTATGGTAGCCTCTGA+AGG 0.445632 1_3:-36145570 None:intergenic
GAAAATTGGGGAAAGCCTCC+TGG 0.445986 1_3:+36145228 Msa0116780:CDS
ACAGATAATATTAAGACATA+TGG 0.446503 1_3:+36146560 Msa0116780:CDS
GCTGGTCGGGATCCCAAAAC+AGG 0.449426 1_3:+36143684 Msa0116780:CDS
AAATGCAATGCAATTGGTAA+TGG 0.450220 1_3:+36142342 Msa0116780:CDS
ATCAAAGCTTCAATAGCCCT+TGG 0.450638 1_3:-36143510 None:intergenic
AGCAACTGCTTCCATGGCTG+TGG 0.450885 1_3:-36145913 None:intergenic
GGGAAGTTTAAAACAAGCCT+TGG 0.450982 1_3:+36146322 Msa0116780:CDS
GCATCTTGAGCTTTATCACT+TGG 0.453125 1_3:-36142885 None:intergenic
CATGGAGTCCACAAGGCAAC+AGG 0.453384 1_3:-36145875 None:intergenic
ATTTGCGTAGCTCCTGCGTT+TGG 0.458715 1_3:-36145589 None:intergenic
GTTGCATTGCCAGAGCTAGA+TGG 0.458979 1_3:+36143639 Msa0116780:CDS
CTTACCTCCATCCTTGGATT+CGG 0.459055 1_3:+36146173 Msa0116780:CDS
TCCCAACTCCTTCAGGAAGC+TGG 0.459347 1_3:+36148041 Msa0116780:CDS
AGAGTGGTTGAATAGTACTT+TGG 0.460158 1_3:+36143587 Msa0116780:CDS
TTCAAAATTTAAGGAAAGAT+GGG 0.460190 1_3:+36147393 Msa0116780:CDS
AATAAACTTACCTCCATCCT+TGG 0.461503 1_3:+36146167 Msa0116780:CDS
TTCTGGACAAGTTGACAATT+GGG 0.462149 1_3:+36147951 Msa0116780:CDS
CTACATTTCCTTTGTCTGGC+GGG 0.463784 1_3:-36144981 None:intergenic
CTCTCCATTGCTGCTGTAGT+AGG 0.464264 1_3:-36146446 None:intergenic
GGTAAATACTTCAAAACCTT+AGG 0.465580 1_3:-36142864 None:intergenic
GACGTCGTCGTTAATTGCTC+TGG 0.466194 1_3:+36146698 Msa0116780:CDS
GGTTCCCTTGAATTCATGCC+TGG 0.466716 1_3:+36145462 Msa0116780:CDS
TCTTCTAATGCTGTGGCATA+GGG 0.468263 1_3:-36145207 None:intergenic
AAATGGAGGAGAAAACGTTT+AGG 0.469039 1_3:-36145017 None:intergenic
CAATGTAGCAACTGCTTCCA+TGG 0.470298 1_3:-36145919 None:intergenic
AGTACTTGGGAGAATGTTTG+AGG 0.471779 1_3:+36146276 Msa0116780:CDS
CAGCAGTGATGAACTATGTA+AGG 0.472717 1_3:+36147036 Msa0116780:CDS
CATACATACAAGGTGCTAAA+GGG 0.474043 1_3:-36143067 None:intergenic
TTCTTCTAATGCTGTGGCAT+AGG 0.474834 1_3:-36145208 None:intergenic
CTTGGATGATCCTGTCTAGC+AGG 0.475362 1_3:-36143492 None:intergenic
TACCTTATTTCTCTGAAACT+TGG 0.477509 1_3:+36148227 Msa0116780:three_prime_UTR
TGAATTCATGCCTGGAAAGC+AGG 0.481681 1_3:+36145470 Msa0116780:CDS
TAGGAATAGATTGTGGATCC+AGG 0.482376 1_3:-36146427 None:intergenic
AGAGCGCACTACTAATAGTA+AGG 0.482393 1_3:+36146124 Msa0116780:CDS
AATCAATGCTTCTGAAGTCT+CGG 0.483709 1_3:-36145091 None:intergenic
GAGTGGAGCAGCTTTGCACC+AGG 0.483821 1_3:+36144198 Msa0116780:CDS
TGCAAAACCAAACCAACAAC+AGG 0.486344 1_3:-36143164 None:intergenic
CATGGAAGCAGTTGCTACAT+TGG 0.487820 1_3:+36145920 Msa0116780:CDS
TTCCCAATATCCGCGTCCAT+TGG 0.488102 1_3:-36148082 None:intergenic
TACATTAACAATGATGCCAT+TGG 0.489859 1_3:-36148276 None:intergenic
CATGTTATCTAGTGGTTATG+AGG 0.489935 1_3:+36147876 Msa0116780:CDS
TCCATTCCTCCATCTAGCTC+TGG 0.490366 1_3:-36143648 None:intergenic
GTAGCTCCTGCGTTTGGCTA+TGG 0.491501 1_3:-36145583 None:intergenic
TATCTGTTCCCCACAGTACA+AGG 0.491790 1_3:-36146544 None:intergenic
TACCTGGGCATTGGCAGTGG+TGG 0.492165 1_3:-36147444 None:intergenic
AATCCCTTGCTCAGGTTCTG+TGG 0.492849 1_3:+36146585 Msa0116780:CDS
CCAAGCTGTTGAACCCCAAA+TGG 0.494653 1_3:+36147845 Msa0116780:CDS
TCATACATACAAGGTGCTAA+AGG 0.498214 1_3:-36143068 None:intergenic
AGTGATGGTTACAATGTTGA+AGG 0.498990 1_3:+36145063 Msa0116780:CDS
CCATTTGGGGTTCAACAGCT+TGG 0.501266 1_3:-36147845 None:intergenic
AAGCTGCTGTTGAGAAAGAA+AGG 0.502411 1_3:+36142658 Msa0116780:CDS
GATATCACAGAATTCACAAA+TGG 0.502956 1_3:-36143441 None:intergenic
TTTCCAAAACCTTGACTCAT+CGG 0.503416 1_3:+36147316 Msa0116780:CDS
ATGAAGAATTCTCCACAGCC+AGG 0.504233 1_3:-36147160 None:intergenic
ATGTCAAAGAGTATTTGAAT+TGG 0.504263 1_3:+36143093 Msa0116780:CDS
CTTCTCGAACTTCAACCCCT+AGG 0.505192 1_3:-36147085 None:intergenic
CTCAGCCCATCTGATTGCCC+TGG 0.505958 1_3:-36144216 None:intergenic
AAGAAAACATTGAGAAGTTG+AGG 0.507918 1_3:+36148112 Msa0116780:CDS
TTGTTCAACCTCATCACCTC+AGG 0.508260 1_3:-36142717 None:intergenic
GGAGTAGGATCCTGAGGCAT+TGG 0.508323 1_3:-36147126 None:intergenic
TTCTCGAACTTCAACCCCTA+GGG 0.508890 1_3:-36147084 None:intergenic
ATCAATGCTTCTGAAGTCTC+GGG 0.509386 1_3:-36145090 None:intergenic
AAAACTTTAGGGTTTCTGAT+CGG 0.510451 1_3:-36146380 None:intergenic
TCAATGAAGAACTTCTCAAC+CGG 0.510611 1_3:-36143402 None:intergenic
AAATTTGTAGAGCCAGGACC+TGG 0.510710 1_3:+36146350 Msa0116780:CDS
AAGAGCGAGATCTTGTTGTT+GGG 0.510971 1_3:+36145817 Msa0116780:CDS
CTAAAAGAACTTCAAAGTGA+TGG 0.511192 1_3:+36145048 Msa0116780:CDS
TGGTAGAGAGATTGCTTGAA+AGG 0.512014 1_3:+36146480 Msa0116780:CDS
TGGCATAGGGAGTGAGAGCT+TGG 0.512578 1_3:-36145194 None:intergenic
AAGTCGAACTGTCTCTGAAA+GGG 0.514784 1_3:-36147812 None:intergenic
TTGGAACAAGCTGAAGCCCT+AGG 0.515247 1_3:+36147068 Msa0116780:CDS
GAAGTGGAAGATAAAATTGA+AGG 0.516822 1_3:+36148147 Msa0116780:CDS
AGGAAAGAATATTCATGCCC+TGG 0.518876 1_3:+36146409 Msa0116780:CDS
GTCTTGAATGAACGTTGTGT+TGG 0.519125 1_3:-36147986 None:intergenic
GCTTGTGAGGACTTTGCCTA+AGG 0.519621 1_3:+36142848 Msa0116780:CDS
AGGATCTTCTCCAATGCCTC+AGG 0.520022 1_3:+36147116 Msa0116780:CDS
GCATGAATATTCTTTCCTGT+TGG 0.520661 1_3:-36146404 None:intergenic
CCTGTAAGCCTTGAAGAGCT+TGG 0.521389 1_3:+36146662 Msa0116780:CDS
AGACAGTTGCCCTTGTACTG+TGG 0.524055 1_3:+36146534 Msa0116780:CDS
AATGGAGAGTGCCAAAATAG+TGG 0.525754 1_3:+36146460 Msa0116780:CDS
GTGATGAGGTTGAACAAATT+GGG 0.525757 1_3:+36142723 Msa0116780:CDS
GCACTTGATCGTGTGGAAGA+AGG 0.526412 1_3:+36145954 Msa0116780:CDS
ATGCAATCTCGACAAGGATG+TGG 0.527790 1_3:+36145761 Msa0116780:CDS
TTTGCACCAGGGCAATCAGA+TGG 0.527982 1_3:+36144210 Msa0116780:CDS
CTTCCGAGGTTATCAGCTAT+CGG 0.530437 1_3:-36146623 None:intergenic
GAAGGTAAATTTGTAGAGCC+AGG 0.531858 1_3:+36146344 Msa0116780:CDS
GTGATAAAGCTCAAGATGCT+AGG 0.532035 1_3:+36142889 Msa0116780:CDS
TGGCAACAGCTATCAATTCA+AGG 0.532190 1_3:-36148256 None:intergenic
CTATGTAAGGAAGCATGCAT+TGG 0.532312 1_3:+36147049 Msa0116780:CDS
ATATGGAGAATCCCTTGCTC+AGG 0.535247 1_3:+36146577 Msa0116780:CDS
CTGAGCTAGTATAGAAGGGA+GGG 0.536608 1_3:-36145985 None:intergenic
TATTCCTACTACAGCAGCAA+TGG 0.537673 1_3:+36146442 Msa0116780:CDS
GAGTGAGAGCTTGGTATTCA+CGG 0.538327 1_3:-36145185 None:intergenic
CCGCCAGACAAAGGAAATGT+AGG 0.538739 1_3:+36144982 Msa0116780:CDS
TCACTCAAGGACACTGGCCG+CGG 0.538856 1_3:+36145699 Msa0116780:CDS
TTGAACCCCAAATGGTATGA+AGG 0.539742 1_3:+36147853 Msa0116780:CDS
GTTCTTCATTTCGGCACACA+CGG 0.543326 1_3:+36145441 Msa0116780:CDS
CTGTTGAGAAAGAAAGGGAC+AGG 0.544266 1_3:+36142664 Msa0116780:CDS
ATATTCCCGATCAGACTGTC+GGG 0.544764 1_3:-36145516 None:intergenic
TGTGAGTTCAATTATTAGCA+CGG 0.546575 1_3:+36145731 Msa0116780:CDS
CAAGTCGAACTGTCTCTGAA+AGG 0.548201 1_3:-36147813 None:intergenic
ATTGTAGCTGATAATGAAGT+GGG 0.548716 1_3:+36146302 Msa0116780:CDS
GATTCGGCATAAACGAGCCA+TGG 0.549574 1_3:+36146189 Msa0116780:CDS
GTTATCCCGACAGTCTGATC+GGG 0.550046 1_3:+36145511 Msa0116780:CDS
TGTTATCCCGACAGTCTGAT+CGG 0.550112 1_3:+36145510 Msa0116780:CDS
TTCAGTTTCCCGCCAGACAA+AGG 0.551110 1_3:+36144973 Msa0116780:CDS
AAAATTGGGGAAAGCCTCCT+GGG 0.551960 1_3:+36145229 Msa0116780:CDS
TCTGGATAGAGCAGTGAAGA+TGG 0.553343 1_3:+36146995 Msa0116780:CDS
CCTACATTTCCTTTGTCTGG+CGG 0.555098 1_3:-36144982 None:intergenic
TGAGAAAGAAAGGGACAGGT+TGG 0.556596 1_3:+36142668 Msa0116780:CDS
CCATCCGCATTCAGATTCCC+AGG 0.556819 1_3:-36145246 None:intergenic
GAATTGGTATGGAACTAGAA+GGG 0.557064 1_3:+36143109 Msa0116780:CDS
TCCGACAAGTACTGAATCCA+TGG 0.557088 1_3:-36146206 None:intergenic
GAAGGTGTATGCTAAGATCA+TGG 0.558148 1_3:+36145839 Msa0116780:CDS
TCTTATGTTCCAGCATTGAA+AGG 0.558366 1_3:+36142990 Msa0116780:CDS
AGCATTGAAAGGTACAAAGA+TGG 0.560280 1_3:+36143001 Msa0116780:CDS
TCCCGACCAGCGAAAACTAT+CGG 0.560614 1_3:-36143672 None:intergenic
ACTGCTTCCATGGCTGTGGG+TGG 0.561275 1_3:-36145909 None:intergenic
CTACTCCTCAAACATAAACC+TGG 0.561850 1_3:+36147142 Msa0116780:CDS
AAGAGGCTTACTAACACAGT+TGG 0.562219 1_3:+36147916 Msa0116780:CDS
ACTCCTCCAGCCGAAAATGC+AGG 0.564072 1_3:+36145627 Msa0116780:CDS
GGATGTGGATTTGCCAGAGG+AGG 0.564165 1_3:+36145776 Msa0116780:CDS
CCTGGGAATCTGAATGCGGA+TGG 0.565028 1_3:+36145246 Msa0116780:CDS
CGATAGCTGATAACCTCGGA+AGG 0.565402 1_3:+36146624 Msa0116780:CDS
TTAACGACGACGTCAACCCT+AGG 0.565771 1_3:-36146689 None:intergenic
GCGAGATCTTGTTGTTGGGA+AGG 0.566549 1_3:+36145821 Msa0116780:CDS
AGGAATAGATTGTGGATCCA+GGG 0.566579 1_3:-36146426 None:intergenic
CACTCTGAGCTAGTATAGAA+GGG 0.566931 1_3:-36145989 None:intergenic
ATTAGTAGTGCGCTCTACAA+AGG 0.567137 1_3:-36146117 None:intergenic
TGGCTATGGTAGCCTCTGAA+GGG 0.567287 1_3:-36145569 None:intergenic
TACCACCACTGCCAATGCCC+AGG 0.567361 1_3:+36147442 Msa0116780:CDS
ACATGCCTTCATACCATTTG+GGG 0.567611 1_3:-36147858 None:intergenic
ACTTGAGGCTAAAGGTGCTA+AGG 0.567955 1_3:+36143341 Msa0116780:intron
GACAGTTGCCCTTGTACTGT+GGG 0.568375 1_3:+36146535 Msa0116780:CDS
TTCTTGGAAGCCAATGGACG+CGG 0.569693 1_3:+36148072 Msa0116780:CDS
CTTTCCAGGCATGAATTCAA+GGG 0.570369 1_3:-36145466 None:intergenic
GAGTCCCGCCTGTTGCCTTG+TGG 0.570560 1_3:+36145867 Msa0116780:CDS
GGATTTGCCAGAGGAGGGTG+TGG 0.570930 1_3:+36145782 Msa0116780:CDS
TGGTGAGCCACCCACAGCCA+TGG 0.572051 1_3:+36145902 Msa0116780:CDS
TCATGCCTGGAAAGCAGGTA+GGG 0.572227 1_3:+36145475 Msa0116780:CDS
GCAACTGCTTCCATGGCTGT+GGG 0.573262 1_3:-36145912 None:intergenic
GCCAGAGCTAGATGGAGGAA+TGG 0.573307 1_3:+36143647 Msa0116780:CDS
AGTTTAAAACAAGCCTTGGA+AGG 0.573560 1_3:+36146326 Msa0116780:CDS
AGCTGCTGTTGAGAAAGAAA+GGG 0.574923 1_3:+36142659 Msa0116780:CDS
TGAAGAGCTTGGAAGACCTA+GGG 0.575077 1_3:+36146673 Msa0116780:CDS
TGGAACAAGCTGAAGCCCTA+GGG 0.576669 1_3:+36147069 Msa0116780:CDS
AATTCTGTGATATCTCTCAC+TGG 0.577320 1_3:+36143450 Msa0116780:CDS
TTGCACCAGGGCAATCAGAT+GGG 0.578411 1_3:+36144211 Msa0116780:CDS
AATTGTAGCTGATAATGAAG+TGG 0.581181 1_3:+36146301 Msa0116780:CDS
TTGAAGAGCTTGGAAGACCT+AGG 0.581627 1_3:+36146672 Msa0116780:CDS
TCACCTTCGTAGCCAAATGT+AGG 0.581846 1_3:-36145324 None:intergenic
TCTATACTAGCTCAGAGTGT+AGG 0.582656 1_3:+36145993 Msa0116780:CDS
GCCATGGATTCAGTACTTGT+CGG 0.583198 1_3:+36146205 Msa0116780:CDS
CTCAAACATAAACCTGGCTG+TGG 0.583568 1_3:+36147148 Msa0116780:CDS
GGGAGATTTCCGATGAGTCA+AGG 0.586930 1_3:-36147325 None:intergenic
ATTGGAGAAGATCCTTGTTG+CGG 0.587479 1_3:-36147108 None:intergenic
AAGCAAAAGACTTTCTGCTA+AGG 0.588891 1_3:-36147214 None:intergenic
ACAAGATCTCGCTCTTTAGT+GGG 0.590525 1_3:-36145810 None:intergenic
CAGCTGCTGAGACTGATGAT+TGG 0.591859 1_3:-36142467 None:intergenic
GAGGCAGTTGTACTCAGAAG+TGG 0.592377 1_3:+36148131 Msa0116780:CDS
GCTCGTTTATGCCGAATCCA+AGG 0.594381 1_3:-36146184 None:intergenic
GGAGTCCACAAGGCAACAGG+CGG 0.595305 1_3:-36145872 None:intergenic
AAATCTGCAAGCCCTCATCA+TGG 0.595409 1_3:+36145369 Msa0116780:CDS
CAACCTACATTTGGCTACGA+AGG 0.595624 1_3:+36145321 Msa0116780:CDS
CAAACATTCTTGGAAGCCAA+TGG 0.597139 1_3:+36148066 Msa0116780:CDS
CTGCTAGACAGGATCATCCA+AGG 0.598388 1_3:+36143493 Msa0116780:CDS
TGTTTGCACCAGCTTCCTGA+AGG 0.602417 1_3:-36148049 None:intergenic
CAAGGCTTACAGGTTCTACA+CGG 0.603134 1_3:-36146652 None:intergenic
GTATCAGCAATATATGCACT+TGG 0.603205 1_3:-36147422 None:intergenic
TCACGCTCTTCACAAGAGAG+TGG 0.605513 1_3:+36144181 Msa0116780:CDS
TGCTAGACAGGATCATCCAA+GGG 0.605763 1_3:+36143494 Msa0116780:CDS
ATGTTATCTAGTGGTTATGA+GGG 0.606082 1_3:+36147877 Msa0116780:CDS
GGCTTACTAACACAGTTGGA+TGG 0.608400 1_3:+36147920 Msa0116780:CDS
ATTTATAGAAGCAGTGACAA+AGG 0.608838 1_3:+36146032 Msa0116780:CDS
CATCAATGCCTGAGGTGATG+AGG 0.609334 1_3:+36142709 Msa0116780:CDS
AACTCACAATTTGTTGACCG+CGG 0.612209 1_3:-36145716 None:intergenic
GATGTGGATTTGCCAGAGGA+GGG 0.612511 1_3:+36145777 Msa0116780:CDS
AATATTCCCGATCAGACTGT+CGG 0.612746 1_3:-36145517 None:intergenic
AACGTACGAAACATTCTGCA+AGG 0.613833 1_3:+36142569 Msa0116780:CDS
AGCTAGTATAGAAGGGAGGG+AGG 0.614373 1_3:-36145982 None:intergenic
TCATCCACAGAACCTGAGCA+AGG 0.614478 1_3:-36146589 None:intergenic
GAGTGTAGGAAGAAACATAG+AGG 0.615313 1_3:+36146007 Msa0116780:CDS
TTCATGCCTGGAAAGCAGGT+AGG 0.615731 1_3:+36145474 Msa0116780:CDS
GTTTGAGGAGTAGGATCCTG+AGG 0.617687 1_3:-36147132 None:intergenic
CTACACGGTTGACCCTTCCG+AGG 0.618332 1_3:-36146637 None:intergenic
GTTTATGCCGAATCCAAGGA+TGG 0.618597 1_3:-36146180 None:intergenic
GGTGTTTCCATCAATGCCTG+AGG 0.619009 1_3:+36142701 Msa0116780:CDS
ATCTGTTCCCCACAGTACAA+GGG 0.619067 1_3:-36146543 None:intergenic
GAGTCCACAAGGCAACAGGC+GGG 0.619334 1_3:-36145871 None:intergenic
AGTTGTCGGTTACTTAGTCG+AGG 0.622689 1_3:+36142530 Msa0116780:CDS
TTGGAGAAAAGTAACCGCAT+AGG 0.627390 1_3:-36145348 None:intergenic
CCAATGACATGGAGTCCACA+AGG 0.627709 1_3:-36145882 None:intergenic
GAGCGCACTACTAATAGTAA+GGG 0.627775 1_3:+36146125 Msa0116780:CDS
ATGCTGCAAAACCATGATGA+GGG 0.628612 1_3:-36145380 None:intergenic
GAATTGATAGCTGTTGCCAA+TGG 0.630507 1_3:+36148260 Msa0116780:three_prime_UTR
TATGCTGCAAAACCATGATG+AGG 0.631679 1_3:-36145381 None:intergenic
ATAGCATGTTGAAGCTTGTG+AGG 0.631952 1_3:+36142835 Msa0116780:CDS
TCTGAGCTAGTATAGAAGGG+AGG 0.635865 1_3:-36145986 None:intergenic
AAGTTCGAGAAGCCGCAACA+AGG 0.636456 1_3:+36147096 Msa0116780:CDS
GCCTCCTGGGAATCTGAATG+CGG 0.636519 1_3:+36145242 Msa0116780:CDS
GTAATGACTGACATCAGTGA+GGG 0.638222 1_3:-36147345 None:intergenic
TGCTGCAAACAACCCTTCAG+AGG 0.638847 1_3:+36145557 Msa0116780:CDS
CATCCACAGAACCTGAGCAA+GGG 0.638930 1_3:-36146588 None:intergenic
AGTGGAGCAGCTTTGCACCA+GGG 0.638947 1_3:+36144199 Msa0116780:CDS
GTGTTCGGGAAATCGAGAAG+AGG 0.640018 1_3:+36147899 Msa0116780:CDS
CACAACGTTCATTCAAGACG+AGG 0.640892 1_3:+36147990 Msa0116780:CDS
TAAACAATGCAATCTCGACA+AGG 0.641680 1_3:+36145755 Msa0116780:CDS
CATAGCTGCACTTGATCGTG+TGG 0.643552 1_3:+36145947 Msa0116780:CDS
TTGACATCATCATACATACA+AGG 0.653715 1_3:-36143077 None:intergenic
TCAGTTGTCTGGAAAACCAG+TGG 0.654285 1_3:-36143564 None:intergenic
TATGAAGGCATGTTATCTAG+TGG 0.654989 1_3:+36147868 Msa0116780:CDS
TATCAGTCACTCAAGGACAC+TGG 0.659943 1_3:+36145693 Msa0116780:CDS
AGGCTACCATAGCCAAACGC+AGG 0.661038 1_3:+36145577 Msa0116780:CDS
TGGGTGGCTCACCAATGACA+TGG 0.661910 1_3:-36145893 None:intergenic
CAAGGATGTGGATTTGCCAG+AGG 0.666663 1_3:+36145773 Msa0116780:CDS
CTCGTCGTATCAGTCACTCA+AGG 0.667889 1_3:+36145686 Msa0116780:CDS
TTTGTAGAGCCAGGACCTGG+AGG 0.671079 1_3:+36146353 Msa0116780:CDS
AATCCGATAGCTGATAACCT+CGG 0.674393 1_3:+36146620 Msa0116780:CDS
CAAATAACCGAAGCATCACG+CGG 0.677542 1_3:+36146083 Msa0116780:CDS
GCTACGAAGGTGATCCTATG+CGG 0.681192 1_3:+36145334 Msa0116780:CDS
TGCGGATGGAGAGAATCTGT+TGG 0.692344 1_3:+36145260 Msa0116780:CDS
GATAGCTGATAACCTCGGAA+GGG 0.693097 1_3:+36146625 Msa0116780:CDS
GCATTGCCAGAGCTAGATGG+AGG 0.693777 1_3:+36143642 Msa0116780:CDS
GGAACAAGCTGAAGCCCTAG+GGG 0.696330 1_3:+36147070 Msa0116780:CDS
ACAGCATTAGAAGAAAATTG+GGG 0.696979 1_3:+36145216 Msa0116780:CDS
GAAAATGCAGGACTGTACAA+GGG 0.702354 1_3:+36145639 Msa0116780:CDS
AGTAATGACTGACATCAGTG+AGG 0.702723 1_3:-36147346 None:intergenic
TATGCCGAATCCAAGGATGG+AGG 0.719005 1_3:-36146177 None:intergenic
TCCGCATTCAGATTCCCAGG+AGG 0.735025 1_3:-36145243 None:intergenic
GCTGTAGTAGGAATAGATTG+TGG 0.740284 1_3:-36146434 None:intergenic
GAAAACGTTTAGGTACGCAG+CGG 0.758267 1_3:-36145007 None:intergenic
CAACAGCTATCAATTCAAGG+TGG 0.759637 1_3:-36148253 None:intergenic
ACAGTTGCCCTTGTACTGTG+GGG 0.790700 1_3:+36146536 Msa0116780:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! CATATCTTTATATATAAAAT+TGG - chr1_3:36148411-36148430 None:intergenic 10.0%
!!! CAATTTTATATATAAAGATA+TGG + chr1_3:36148409-36148428 Msa0116780:three_prime_UTR 10.0%
!! AAATTCACTAATGTTTATTA+AGG + chr1_3:36144152-36144171 Msa0116780:intron 15.0%
!!! AATTTTTGTTTTTGTTATAG+AGG - chr1_3:36146833-36146852 None:intergenic 15.0%
!!! GTTTTCTTAGAAAAAAAATT+GGG + chr1_3:36147502-36147521 Msa0116780:intron 15.0%
!! TATAAAATTGGAAGATATAT+TGG - chr1_3:36148399-36148418 None:intergenic 15.0%
!!! TGTTTTTAGATAATGGAATT+TGG + chr1_3:36143042-36143061 Msa0116780:CDS 20.0%
!! AAAAGCAACTTATAACTTAT+AGG + chr1_3:36143949-36143968 Msa0116780:intron 20.0%
!! ATATCACATAAAGAAAACTT+CGG - chr1_3:36144418-36144437 None:intergenic 20.0%
!!! TTTGTTGACATTTTATATTG+TGG + chr1_3:36144682-36144701 Msa0116780:intron 20.0%
!!! ACAAGATGATTTTTAGATAT+TGG - chr1_3:36144778-36144797 None:intergenic 20.0%
!! ACAGATAATATTAAGACATA+TGG + chr1_3:36146560-36146579 Msa0116780:CDS 20.0%
!! GATTCTGTTATTGTTTAAAA+AGG + chr1_3:36146774-36146793 Msa0116780:intron 20.0%
!! TTCAAAATTTAAGGAAAGAT+GGG + chr1_3:36147393-36147412 Msa0116780:CDS 20.0%
!!! CGTTTTCTTAGAAAAAAAAT+TGG + chr1_3:36147501-36147520 Msa0116780:intron 20.0%
!! AAGATGAAATCTCTATATAA+TGG - chr1_3:36148437-36148456 None:intergenic 20.0%
! TTAGAATTTGGTAGAGTAAA+TGG - chr1_3:36142219-36142238 None:intergenic 25.0%
!!! AGTTGATCAACTTTAGAATT+TGG - chr1_3:36142231-36142250 None:intergenic 25.0%
!!! TTTTGAGTTACCATAGTAAT+TGG - chr1_3:36142307-36142326 None:intergenic 25.0%
! TTCTTGAAAAGCTGAAAAAA+AGG - chr1_3:36142786-36142805 None:intergenic 25.0%
! AAGAAATTCTGCAAATTATC+AGG - chr1_3:36142954-36142973 None:intergenic 25.0%
! AATTTCTTGAAGATGATTTC+TGG + chr1_3:36142966-36142985 Msa0116780:CDS 25.0%
! CCATTATCTAAAAACAAAAC+AGG - chr1_3:36143038-36143057 None:intergenic 25.0%
!!! CCTGTTTTGTTTTTAGATAA+TGG + chr1_3:36143035-36143054 Msa0116780:CDS 25.0%
!!! ATGTCAAAGAGTATTTGAAT+TGG + chr1_3:36143093-36143112 Msa0116780:CDS 25.0%
!!! AAAGAGTATTTGAATTGGTA+TGG + chr1_3:36143098-36143117 Msa0116780:CDS 25.0%
! ACAAATGGTTTCTTAGTAAT+AGG - chr1_3:36143429-36143448 None:intergenic 25.0%
! TTAATAGGGTATAAGGTAAA+AGG - chr1_3:36143765-36143784 None:intergenic 25.0%
!! TTTTACCTTATACCCTATTA+AGG + chr1_3:36143764-36143783 Msa0116780:intron 25.0%
!!! GTTGCTTTTATAAGTTATTC+AGG - chr1_3:36143938-36143957 None:intergenic 25.0%
!! TTAAGTTGTTTATGTGAACA+AGG + chr1_3:36144068-36144087 Msa0116780:intron 25.0%
! TAAGTTGTTTATGTGAACAA+GGG + chr1_3:36144069-36144088 Msa0116780:intron 25.0%
!! TGAGTTGAAAAGAAAAACAA+AGG + chr1_3:36144235-36144254 Msa0116780:CDS 25.0%
! TGAAGTCATATTATCTCTTA+AGG + chr1_3:36144279-36144298 Msa0116780:intron 25.0%
! ATATTATCTCTTAAGGTTGT+AGG + chr1_3:36144286-36144305 Msa0116780:intron 25.0%
! TATTATCTCTTAAGGTTGTA+GGG + chr1_3:36144287-36144306 Msa0116780:intron 25.0%
!! TCGGCTTTTAATAAAAGAAT+AGG - chr1_3:36144369-36144388 None:intergenic 25.0%
! TTCCTAAATCTACTTGAAAT+CGG - chr1_3:36144388-36144407 None:intergenic 25.0%
! TGATACTATAAGTAATCTCT+AGG + chr1_3:36144454-36144473 Msa0116780:intron 25.0%
! CATCTTTCATGTAAATTCAT+AGG + chr1_3:36144743-36144762 Msa0116780:intron 25.0%
! TGTTGAAATTATCTTGATAC+AGG + chr1_3:36144924-36144943 Msa0116780:intron 25.0%
!!! TTCTTTTAGAACAGAGAAAA+TGG - chr1_3:36145037-36145056 None:intergenic 25.0%
!! CAATATGGTAATGTATTCAT+AGG + chr1_3:36145294-36145313 Msa0116780:CDS 25.0%
!!! AGAATTTTGTTTGAGTACTT+GGG + chr1_3:36146263-36146282 Msa0116780:CDS 25.0%
! GAAAGGCAAAAAATTGATAA+TGG + chr1_3:36146497-36146516 Msa0116780:CDS 25.0%
!! TTTGTTATAGAGGTTAAGTA+TGG - chr1_3:36146823-36146842 None:intergenic 25.0%
! AGAAACTATAATGATTGTTC+AGG + chr1_3:36146868-36146887 Msa0116780:intron 25.0%
! GAAACTATAATGATTGTTCA+GGG + chr1_3:36146869-36146888 Msa0116780:intron 25.0%
! ATGAAAATCTTGGAGTAATA+AGG - chr1_3:36146922-36146941 None:intergenic 25.0%
!! AAATTTTGAACAAGGTTAGT+GGG - chr1_3:36147383-36147402 None:intergenic 25.0%
!! TAAATTTTGAACAAGGTTAG+TGG - chr1_3:36147384-36147403 None:intergenic 25.0%
! CTAACCTTGTTCAAAATTTA+AGG + chr1_3:36147384-36147403 Msa0116780:CDS 25.0%
!! CTTTCCTTAAATTTTGAACA+AGG - chr1_3:36147391-36147410 None:intergenic 25.0%
! GTTCAAAATTTAAGGAAAGA+TGG + chr1_3:36147392-36147411 Msa0116780:CDS 25.0%
!! TCATATAACAACTTTTACCT+GGG - chr1_3:36147462-36147481 None:intergenic 25.0%
!! TTCATATAACAACTTTTACC+TGG - chr1_3:36147463-36147482 None:intergenic 25.0%
! GAAAGATCAAAATCCTAATA+AGG - chr1_3:36147684-36147703 None:intergenic 25.0%
! AAAATTACAACAGGGAAAAA+GGG - chr1_3:36148318-36148337 None:intergenic 25.0%
! AAAAATTACAACAGGGAAAA+AGG - chr1_3:36148319-36148338 None:intergenic 25.0%
! AGTCAACAAAAATTACAACA+GGG - chr1_3:36148326-36148345 None:intergenic 25.0%
! AAGTCAACAAAAATTACAAC+AGG - chr1_3:36148327-36148346 None:intergenic 25.0%
!!! TGTAATTTTTGTTGACTTTC+AGG + chr1_3:36148329-36148348 Msa0116780:three_prime_UTR 25.0%
!!! GTAATTTTTGTTGACTTTCA+GGG + chr1_3:36148330-36148349 Msa0116780:three_prime_UTR 25.0%
!!! AGTAATTGGTTTTCTTAGGA+AGG - chr1_3:36142293-36142312 None:intergenic 30.0%
!!! CCATAGTAATTGGTTTTCTT+AGG - chr1_3:36142297-36142316 None:intergenic 30.0%
CCTAAGAAAACCAATTACTA+TGG + chr1_3:36142294-36142313 Msa0116780:CDS 30.0%
TGCATTGCATTTCAATCTAA+AGG - chr1_3:36142334-36142353 None:intergenic 30.0%
AGATTGAAATGCAATGCAAT+TGG + chr1_3:36142336-36142355 Msa0116780:CDS 30.0%
AAATGCAATGCAATTGGTAA+TGG + chr1_3:36142342-36142361 Msa0116780:CDS 30.0%
! ACATACACAATTTTCACTGT+TGG - chr1_3:36142429-36142448 None:intergenic 30.0%
GAAGATGCTAATATCTTCAT+TGG + chr1_3:36142597-36142616 Msa0116780:CDS 30.0%
!!! TGGTTCATTGATTTTTGTTG+AGG + chr1_3:36142617-36142636 Msa0116780:CDS 30.0%
! TCTTTTAGTATGTCACAACT+TGG + chr1_3:36142747-36142766 Msa0116780:CDS 30.0%
GGTAAATACTTCAAAACCTT+AGG - chr1_3:36142867-36142886 None:intergenic 30.0%
! ATATCTTGAGTCTACAGTTT+TGG + chr1_3:36142916-36142935 Msa0116780:CDS 30.0%
TTGACATCATCATACATACA+AGG - chr1_3:36143080-36143099 None:intergenic 30.0%
GATATCACAGAATTCACAAA+TGG - chr1_3:36143444-36143463 None:intergenic 30.0%
!! GTGATTGTTTTACCTGTTTT+GGG - chr1_3:36143699-36143718 None:intergenic 30.0%
!! AGTGATTGTTTTACCTGTTT+TGG - chr1_3:36143700-36143719 None:intergenic 30.0%
ACAATCCTTAATAGGGTATA+AGG - chr1_3:36143772-36143791 None:intergenic 30.0%
TTGAAGCAGATATCTGATAT+TGG + chr1_3:36144327-36144346 Msa0116780:intron 30.0%
TACTATAAGTAATCTCTAGG+TGG + chr1_3:36144457-36144476 Msa0116780:intron 30.0%
TAATCTGAACAAAAGAAACG+AGG - chr1_3:36144647-36144666 None:intergenic 30.0%
TTCCAATGTAGTAAAACCTT+AGG + chr1_3:36144840-36144859 Msa0116780:intron 30.0%
TCCAATGTAGTAAAACCTTA+GGG + chr1_3:36144841-36144860 Msa0116780:intron 30.0%
!!! TTTTAGAACAGAGAAAATGG+AGG - chr1_3:36145034-36145053 None:intergenic 30.0%
CTAAAAGAACTTCAAAGTGA+TGG + chr1_3:36145048-36145067 Msa0116780:CDS 30.0%
TGTAAGCAATGTTGAGATTT+GGG - chr1_3:36145155-36145174 None:intergenic 30.0%
TTGTAAGCAATGTTGAGATT+TGG - chr1_3:36145156-36145175 None:intergenic 30.0%
CACAGCATTAGAAGAAAATT+GGG + chr1_3:36145215-36145234 Msa0116780:CDS 30.0%
ACAGCATTAGAAGAAAATTG+GGG + chr1_3:36145216-36145235 Msa0116780:CDS 30.0%
TTGGTATATGGTAAGCAATA+TGG + chr1_3:36145279-36145298 Msa0116780:CDS 30.0%
TGTGAGTTCAATTATTAGCA+CGG + chr1_3:36145731-36145750 Msa0116780:CDS 30.0%
ATTTATAGAAGCAGTGACAA+AGG + chr1_3:36146032-36146051 Msa0116780:CDS 30.0%
!! CAGAATTTTGTTTGAGTACT+TGG + chr1_3:36146262-36146281 Msa0116780:CDS 30.0%
! AATTGTAGCTGATAATGAAG+TGG + chr1_3:36146301-36146320 Msa0116780:CDS 30.0%
! ATTGTAGCTGATAATGAAGT+GGG + chr1_3:36146302-36146321 Msa0116780:CDS 30.0%
!! AAAACTTTAGGGTTTCTGAT+CGG - chr1_3:36146383-36146402 None:intergenic 30.0%
! TTCCTGTTGGTAAAACTTTA+GGG - chr1_3:36146394-36146413 None:intergenic 30.0%
! TTTCCTGTTGGTAAAACTTT+AGG - chr1_3:36146395-36146414 None:intergenic 30.0%
!! AGGCAAAAAATTGATAATGG+AGG + chr1_3:36146500-36146519 Msa0116780:CDS 30.0%
CAATAACAGAATCCAAACAA+CGG - chr1_3:36146767-36146786 None:intergenic 30.0%
ACAGACAGATATGAAAATCT+TGG - chr1_3:36146932-36146951 None:intergenic 30.0%
! AAAAAGACAAGTCTTTGAGA+TGG + chr1_3:36147271-36147290 Msa0116780:CDS 30.0%
! AATTTTGAACAAGGTTAGTG+GGG - chr1_3:36147382-36147401 None:intergenic 30.0%
ATTGATTAAAGTGACACTGA+TGG + chr1_3:36147540-36147559 Msa0116780:intron 30.0%
TTGACATTGCAAAACCTAAA+GGG - chr1_3:36147604-36147623 None:intergenic 30.0%
TTTGACATTGCAAAACCTAA+AGG - chr1_3:36147605-36147624 None:intergenic 30.0%
!!! AGTTTTTTCGTTTGACCTTA+TGG + chr1_3:36147764-36147783 Msa0116780:intron 30.0%
AAAGGAACAATATCTCCATA+AGG - chr1_3:36147782-36147801 None:intergenic 30.0%
ATGTTATCTAGTGGTTATGA+GGG + chr1_3:36147877-36147896 Msa0116780:CDS 30.0%
AAGAAAACATTGAGAAGTTG+AGG + chr1_3:36148112-36148131 Msa0116780:CDS 30.0%
GAAGTGGAAGATAAAATTGA+AGG + chr1_3:36148147-36148166 Msa0116780:CDS 30.0%
!! TACCTTATTTCTCTGAAACT+TGG + chr1_3:36148227-36148246 Msa0116780:three_prime_UTR 30.0%
AACCAAGTTTCAGAGAAATA+AGG - chr1_3:36148232-36148251 None:intergenic 30.0%
TACATTAACAATGATGCCAT+TGG - chr1_3:36148279-36148298 None:intergenic 30.0%
AAATTACAACAGGGAAAAAG+GGG - chr1_3:36148317-36148336 None:intergenic 30.0%
!! GGTAAGTTTTGCTTGTTTTC+TGG - chr1_3:36142408-36142427 None:intergenic 35.0%
!!! GATGCTTCTTTTGAAGTTGT+CGG + chr1_3:36142516-36142535 Msa0116780:CDS 35.0%
GTGATGAGGTTGAACAAATT+GGG + chr1_3:36142723-36142742 Msa0116780:CDS 35.0%
AAGAAGAATACTTCTTCAGC+TGG + chr1_3:36142804-36142823 Msa0116780:CDS 35.0%
! TCTTATGTTCCAGCATTGAA+AGG + chr1_3:36142990-36143009 Msa0116780:CDS 35.0%
ATCTTTGTACCTTTCAATGC+TGG - chr1_3:36143002-36143021 None:intergenic 35.0%
! AGCATTGAAAGGTACAAAGA+TGG + chr1_3:36143001-36143020 Msa0116780:CDS 35.0%
! CATACATACAAGGTGCTAAA+GGG - chr1_3:36143070-36143089 None:intergenic 35.0%
! TCATACATACAAGGTGCTAA+AGG - chr1_3:36143071-36143090 None:intergenic 35.0%
TGAATTGGTATGGAACTAGA+AGG + chr1_3:36143108-36143127 Msa0116780:CDS 35.0%
GAATTGGTATGGAACTAGAA+GGG + chr1_3:36143109-36143128 Msa0116780:CDS 35.0%
!!! TTGTTGGTTTGGTTTTGCAA+AGG + chr1_3:36143168-36143187 Msa0116780:CDS 35.0%
CAAAGGAGTCATATTGTTAC+TGG + chr1_3:36143185-36143204 Msa0116780:CDS 35.0%
! CATATTGTTACTGGTGATGA+TGG + chr1_3:36143194-36143213 Msa0116780:intron 35.0%
TCATTACGTTGCTGTGATTA+TGG + chr1_3:36143317-36143336 Msa0116780:intron 35.0%
ATTATGGAACTTGAGGCTAA+AGG + chr1_3:36143333-36143352 Msa0116780:intron 35.0%
! AAGGTTATTCCAATTTTCGC+CGG + chr1_3:36143360-36143379 Msa0116780:CDS 35.0%
TCAATGAAGAACTTCTCAAC+CGG - chr1_3:36143405-36143424 None:intergenic 35.0%
AATTCTGTGATATCTCTCAC+TGG + chr1_3:36143450-36143469 Msa0116780:CDS 35.0%
AGTGGCAAAGCAACAATATA+AGG - chr1_3:36143549-36143568 None:intergenic 35.0%
!! TTATATTGTTGCTTTGCCAC+TGG + chr1_3:36143548-36143567 Msa0116780:CDS 35.0%
AGAGTGGTTGAATAGTACTT+TGG + chr1_3:36143587-36143606 Msa0116780:CDS 35.0%
GAGTGGTTGAATAGTACTTT+GGG + chr1_3:36143588-36143607 Msa0116780:CDS 35.0%
ACTTGAAGAGCAACTTGAAT+TGG - chr1_3:36143621-36143640 None:intergenic 35.0%
TGCAAGGACAATCCTTAATA+GGG - chr1_3:36143779-36143798 None:intergenic 35.0%
TTGCAAGGACAATCCTTAAT+AGG - chr1_3:36143780-36143799 None:intergenic 35.0%
TTGTCCTTGCAAATACTCTT+AGG + chr1_3:36143788-36143807 Msa0116780:intron 35.0%
TGTCCTTGCAAATACTCTTA+GGG + chr1_3:36143789-36143808 Msa0116780:intron 35.0%
!!! TAACACTTCTGAGACTGTTT+TGG + chr1_3:36143848-36143867 Msa0116780:intron 35.0%
GAATGAAGAGGAGAGAAAAA+AGG - chr1_3:36144110-36144129 None:intergenic 35.0%
! AGCCGATTTCAAGTAGATTT+AGG + chr1_3:36144383-36144402 Msa0116780:intron 35.0%
!! GATATTGACTTTGAGCTGAA+TGG + chr1_3:36144561-36144580 Msa0116780:intron 35.0%
ATTGGAAAAACATGTAGTGC+AGG - chr1_3:36144827-36144846 None:intergenic 35.0%
! ACCCTAAGGTTTTACTACAT+TGG - chr1_3:36144845-36144864 None:intergenic 35.0%
AAATGGAGGAGAAAACGTTT+AGG - chr1_3:36145020-36145039 None:intergenic 35.0%
AGTGATGGTTACAATGTTGA+AGG + chr1_3:36145063-36145082 Msa0116780:CDS 35.0%
!! AATCAATGCTTCTGAAGTCT+CGG - chr1_3:36145094-36145113 None:intergenic 35.0%
! CCAATTTTCTTCTAATGCTG+TGG - chr1_3:36145217-36145236 None:intergenic 35.0%
CCACAGCATTAGAAGAAAAT+TGG + chr1_3:36145214-36145233 Msa0116780:CDS 35.0%
ATAGGTGTTCAACCTACATT+TGG + chr1_3:36145312-36145331 Msa0116780:CDS 35.0%
GCAGCATAGTAATAGACATT+TGG - chr1_3:36145543-36145562 None:intergenic 35.0%
TAAACAATGCAATCTCGACA+AGG + chr1_3:36145755-36145774 Msa0116780:CDS 35.0%
!! CAGTGACAAAGGAGTATTAA+AGG + chr1_3:36146043-36146062 Msa0116780:CDS 35.0%
TAAAGGATGTAGAGCTTCTT+CGG + chr1_3:36146060-36146079 Msa0116780:CDS 35.0%
AATAAACTTACCTCCATCCT+TGG + chr1_3:36146167-36146186 Msa0116780:CDS 35.0%
! CAAATTTTACCGAGGTGATA+GGG + chr1_3:36146232-36146251 Msa0116780:CDS 35.0%
! AGTTTAAAACAAGCCTTGGA+AGG + chr1_3:36146326-36146345 Msa0116780:CDS 35.0%
CTCTACAAATTTACCTTCCA+AGG - chr1_3:36146342-36146361 None:intergenic 35.0%
!! AAACTTTAGGGTTTCTGATC+GGG - chr1_3:36146382-36146401 None:intergenic 35.0%
! AACCCTAAAGTTTTACCAAC+AGG + chr1_3:36146389-36146408 Msa0116780:CDS 35.0%
GCATGAATATTCTTTCCTGT+TGG - chr1_3:36146407-36146426 None:intergenic 35.0%
! CAATCTCTCTACCACTATTT+TGG - chr1_3:36146474-36146493 None:intergenic 35.0%
CTGATACCTGATTGATGAAA+AGG - chr1_3:36146736-36146755 None:intergenic 35.0%
TCTTCTTCAGATGAATCTTC+TGG + chr1_3:36146977-36146996 Msa0116780:intron 35.0%
AAGCAAAAGACTTTCTGCTA+AGG - chr1_3:36147217-36147236 None:intergenic 35.0%
TTTCCAAAACCTTGACTCAT+CGG + chr1_3:36147316-36147335 Msa0116780:CDS 35.0%
GTATCAGCAATATATGCACT+TGG - chr1_3:36147425-36147444 None:intergenic 35.0%
TGACATTGCAAAACCTAAAG+GGG - chr1_3:36147603-36147622 None:intergenic 35.0%
ACACAAGTGACATCCTTATT+AGG + chr1_3:36147668-36147687 Msa0116780:intron 35.0%
ATGGAGATATTGTTCCTTTC+AGG + chr1_3:36147783-36147802 Msa0116780:intron 35.0%
AACATGCCTTCATACCATTT+GGG - chr1_3:36147862-36147881 None:intergenic 35.0%
TAACATGCCTTCATACCATT+TGG - chr1_3:36147863-36147882 None:intergenic 35.0%
! TATGAAGGCATGTTATCTAG+TGG + chr1_3:36147868-36147887 Msa0116780:CDS 35.0%
CATGTTATCTAGTGGTTATG+AGG + chr1_3:36147876-36147895 Msa0116780:CDS 35.0%
! TTCTGGACAAGTTGACAATT+GGG + chr1_3:36147951-36147970 Msa0116780:CDS 35.0%
AACGTACGAAACATTCTGCA+AGG + chr1_3:36142569-36142588 Msa0116780:CDS 40.0%
AAGCTGCTGTTGAGAAAGAA+AGG + chr1_3:36142658-36142677 Msa0116780:CDS 40.0%
AGCTGCTGTTGAGAAAGAAA+GGG + chr1_3:36142659-36142678 Msa0116780:CDS 40.0%
GGTGATGAGGTTGAACAAAT+TGG + chr1_3:36142722-36142741 Msa0116780:CDS 40.0%
ATAGCATGTTGAAGCTTGTG+AGG + chr1_3:36142835-36142854 Msa0116780:CDS 40.0%
! GCATCTTGAGCTTTATCACT+TGG - chr1_3:36142888-36142907 None:intergenic 40.0%
GTGATAAAGCTCAAGATGCT+AGG + chr1_3:36142889-36142908 Msa0116780:CDS 40.0%
!!! TTGAGTCTACAGTTTTGGCT+TGG + chr1_3:36142921-36142940 Msa0116780:CDS 40.0%
AGTTCAAATGCACCTGTTGT+TGG + chr1_3:36143152-36143171 Msa0116780:CDS 40.0%
! AAATGCACCTGTTGTTGGTT+TGG + chr1_3:36143157-36143176 Msa0116780:CDS 40.0%
TGCAAAACCAAACCAACAAC+AGG - chr1_3:36143167-36143186 None:intergenic 40.0%
TGCTGTGATTATGGAACTTG+AGG + chr1_3:36143326-36143345 Msa0116780:intron 40.0%
! TTATTCCAATTTTCGCCGGA+GGG + chr1_3:36143364-36143383 Msa0116780:CDS 40.0%
ATCAAAGCTTCAATAGCCCT+TGG - chr1_3:36143513-36143532 None:intergenic 40.0%
! TTTTCCAGACAACTGAAGAG+TGG + chr1_3:36143571-36143590 Msa0116780:CDS 40.0%
!! AGACCCTAAGAGTATTTGCA+AGG - chr1_3:36143795-36143814 None:intergenic 40.0%
GCAAGCAAGAATGAATGAAG+AGG - chr1_3:36144122-36144141 None:intergenic 40.0%
TGACTTCAAGACGCGAAATA+TGG - chr1_3:36144267-36144286 None:intergenic 40.0%
GTTCCTACATTTCCTTTGTC+TGG - chr1_3:36144988-36145007 None:intergenic 40.0%
!! ATCAATGCTTCTGAAGTCTC+GGG - chr1_3:36145093-36145112 None:intergenic 40.0%
TCTTCTAATGCTGTGGCATA+GGG - chr1_3:36145210-36145229 None:intergenic 40.0%
TTCTTCTAATGCTGTGGCAT+AGG - chr1_3:36145211-36145230 None:intergenic 40.0%
GGAGAGAATCTGTTGGTATA+TGG + chr1_3:36145267-36145286 Msa0116780:CDS 40.0%
TTGGAGAAAAGTAACCGCAT+AGG - chr1_3:36145351-36145370 None:intergenic 40.0%
ATGCTGCAAAACCATGATGA+GGG - chr1_3:36145383-36145402 None:intergenic 40.0%
TATGCTGCAAAACCATGATG+AGG - chr1_3:36145384-36145403 None:intergenic 40.0%
GCTGATGCTGTTCTTCATTT+CGG + chr1_3:36145432-36145451 Msa0116780:CDS 40.0%
CTTTCCAGGCATGAATTCAA+GGG - chr1_3:36145469-36145488 None:intergenic 40.0%
AATATTCCCGATCAGACTGT+CGG - chr1_3:36145520-36145539 None:intergenic 40.0%
TGGAGGAGTAAGATAGCTTA+TGG - chr1_3:36145616-36145635 None:intergenic 40.0%
! CTTGTACAGTCCTGCATTTT+CGG - chr1_3:36145640-36145659 None:intergenic 40.0%
GAAAATGCAGGACTGTACAA+GGG + chr1_3:36145639-36145658 Msa0116780:CDS 40.0%
!! AACTCACAATTTGTTGACCG+CGG - chr1_3:36145719-36145738 None:intergenic 40.0%
ACAAGATCTCGCTCTTTAGT+GGG - chr1_3:36145813-36145832 None:intergenic 40.0%
AACAAGATCTCGCTCTTTAG+TGG - chr1_3:36145814-36145833 None:intergenic 40.0%
! AAAGAGCGAGATCTTGTTGT+TGG + chr1_3:36145816-36145835 Msa0116780:CDS 40.0%
!! AAGAGCGAGATCTTGTTGTT+GGG + chr1_3:36145817-36145836 Msa0116780:CDS 40.0%
! GAAGGTGTATGCTAAGATCA+TGG + chr1_3:36145839-36145858 Msa0116780:CDS 40.0%
CACTCTGAGCTAGTATAGAA+GGG - chr1_3:36145992-36146011 None:intergenic 40.0%
ACACTCTGAGCTAGTATAGA+AGG - chr1_3:36145993-36146012 None:intergenic 40.0%
TCTATACTAGCTCAGAGTGT+AGG + chr1_3:36145993-36146012 Msa0116780:CDS 40.0%
GAGTGTAGGAAGAAACATAG+AGG + chr1_3:36146007-36146026 Msa0116780:CDS 40.0%
ATTAGTAGTGCGCTCTACAA+AGG - chr1_3:36146120-36146139 None:intergenic 40.0%
AGAGCGCACTACTAATAGTA+AGG + chr1_3:36146124-36146143 Msa0116780:CDS 40.0%
GAGCGCACTACTAATAGTAA+GGG + chr1_3:36146125-36146144 Msa0116780:CDS 40.0%
CCTATCACCTCGGTAAAATT+TGG - chr1_3:36146234-36146253 None:intergenic 40.0%
! CCAAATTTTACCGAGGTGAT+AGG + chr1_3:36146231-36146250 Msa0116780:CDS 40.0%
AGTACTTGGGAGAATGTTTG+AGG + chr1_3:36146276-36146295 Msa0116780:CDS 40.0%
! GGGAAGTTTAAAACAAGCCT+TGG + chr1_3:36146322-36146341 Msa0116780:CDS 40.0%
GAAGGTAAATTTGTAGAGCC+AGG + chr1_3:36146344-36146363 Msa0116780:CDS 40.0%
AGGAAAGAATATTCATGCCC+TGG + chr1_3:36146409-36146428 Msa0116780:CDS 40.0%
AGGAATAGATTGTGGATCCA+GGG - chr1_3:36146429-36146448 None:intergenic 40.0%
TAGGAATAGATTGTGGATCC+AGG - chr1_3:36146430-36146449 None:intergenic 40.0%
GCTGTAGTAGGAATAGATTG+TGG - chr1_3:36146437-36146456 None:intergenic 40.0%
TATTCCTACTACAGCAGCAA+TGG + chr1_3:36146442-36146461 Msa0116780:CDS 40.0%
!! AATGGAGAGTGCCAAAATAG+TGG + chr1_3:36146460-36146479 Msa0116780:CDS 40.0%
TGGTAGAGAGATTGCTTGAA+AGG + chr1_3:36146480-36146499 Msa0116780:CDS 40.0%
AATCCGATAGCTGATAACCT+CGG + chr1_3:36146620-36146639 Msa0116780:CDS 40.0%
! CAGAGACCTTTTCATCAATC+AGG + chr1_3:36146727-36146746 Msa0116780:CDS 40.0%
TCAGTTATCACACCGTTGTT+TGG + chr1_3:36146752-36146771 Msa0116780:intron 40.0%
CTTACATAGTTCATCACTGC+TGG - chr1_3:36147038-36147057 None:intergenic 40.0%
CAGCAGTGATGAACTATGTA+AGG + chr1_3:36147036-36147055 Msa0116780:CDS 40.0%
! CTATGTAAGGAAGCATGCAT+TGG + chr1_3:36147049-36147068 Msa0116780:CDS 40.0%
ATTGGAGAAGATCCTTGTTG+CGG - chr1_3:36147111-36147130 None:intergenic 40.0%
CAGGTTTATGTTTGAGGAGT+AGG - chr1_3:36147144-36147163 None:intergenic 40.0%
CTACTCCTCAAACATAAACC+TGG + chr1_3:36147142-36147161 Msa0116780:CDS 40.0%
TTCTGCTAAGGTACATGTCT+TGG - chr1_3:36147205-36147224 None:intergenic 40.0%
!!! TGAGTCAAGGTTTTGGAAAG+TGG - chr1_3:36147315-36147334 None:intergenic 40.0%
! TTTCCGATGAGTCAAGGTTT+TGG - chr1_3:36147322-36147341 None:intergenic 40.0%
GTAATGACTGACATCAGTGA+GGG - chr1_3:36147348-36147367 None:intergenic 40.0%
AGTAATGACTGACATCAGTG+AGG - chr1_3:36147349-36147368 None:intergenic 40.0%
! AACAACTTTTACCTGGGCAT+TGG - chr1_3:36147456-36147475 None:intergenic 40.0%
! TCATTTTATAACCATCCCCG+AGG + chr1_3:36147563-36147582 Msa0116780:intron 40.0%
GATTTGAATTTCGCCCCTTT+AGG + chr1_3:36147587-36147606 Msa0116780:intron 40.0%
! AAGTCGAACTGTCTCTGAAA+GGG - chr1_3:36147815-36147834 None:intergenic 40.0%
TTGAACCCCAAATGGTATGA+AGG + chr1_3:36147853-36147872 Msa0116780:CDS 40.0%
ACATGCCTTCATACCATTTG+GGG - chr1_3:36147861-36147880 None:intergenic 40.0%
AAGAGGCTTACTAACACAGT+TGG + chr1_3:36147916-36147935 Msa0116780:CDS 40.0%
! CTTCTGGACAAGTTGACAAT+TGG + chr1_3:36147950-36147969 Msa0116780:CDS 40.0%
GTCTTGAATGAACGTTGTGT+TGG - chr1_3:36147989-36148008 None:intergenic 40.0%
CAAACATTCTTGGAAGCCAA+TGG + chr1_3:36148066-36148085 Msa0116780:CDS 40.0%
CAACAGCTATCAATTCAAGG+TGG - chr1_3:36148256-36148275 None:intergenic 40.0%
TGGCAACAGCTATCAATTCA+AGG - chr1_3:36148259-36148278 None:intergenic 40.0%
! GAATTGATAGCTGTTGCCAA+TGG + chr1_3:36148260-36148279 Msa0116780:three_prime_UTR 40.0%
GCATTTGCAACTGCACAAAA+AGG - chr1_3:36148364-36148383 None:intergenic 40.0%
! AGTTGTCGGTTACTTAGTCG+AGG + chr1_3:36142530-36142549 Msa0116780:CDS 45.0%
CTGTTGAGAAAGAAAGGGAC+AGG + chr1_3:36142664-36142683 Msa0116780:CDS 45.0%
TGAGAAAGAAAGGGACAGGT+TGG + chr1_3:36142668-36142687 Msa0116780:CDS 45.0%
TTGTTCAACCTCATCACCTC+AGG - chr1_3:36142720-36142739 None:intergenic 45.0%
!!! AGTCTACAGTTTTGGCTTGG+TGG + chr1_3:36142924-36142943 Msa0116780:CDS 45.0%
!!! GTCTACAGTTTTGGCTTGGT+GGG + chr1_3:36142925-36142944 Msa0116780:CDS 45.0%
!! ACTTGAGGCTAAAGGTGCTA+AGG + chr1_3:36143341-36143360 Msa0116780:intron 45.0%
! GTTATTCCAATTTTCGCCGG+AGG + chr1_3:36143363-36143382 Msa0116780:CDS 45.0%
! CTCACTGGATTTGCTCTTGT+TGG + chr1_3:36143465-36143484 Msa0116780:CDS 45.0%
! ACTGGATTTGCTCTTGTTGG+AGG + chr1_3:36143468-36143487 Msa0116780:CDS 45.0%
! CTGGATTTGCTCTTGTTGGA+GGG + chr1_3:36143469-36143488 Msa0116780:CDS 45.0%
TGCTAGACAGGATCATCCAA+GGG + chr1_3:36143494-36143513 Msa0116780:CDS 45.0%
TCAGTTGTCTGGAAAACCAG+TGG - chr1_3:36143567-36143586 None:intergenic 45.0%
TCAACCACTCTTCAGTTGTC+TGG - chr1_3:36143578-36143597 None:intergenic 45.0%
TTCACATGAAGACGACCCTA+AGG - chr1_3:36144859-36144878 None:intergenic 45.0%
CTACATTTCCTTTGTCTGGC+GGG - chr1_3:36144984-36145003 None:intergenic 45.0%
CCTACATTTCCTTTGTCTGG+CGG - chr1_3:36144985-36145004 None:intergenic 45.0%
GAAAACGTTTAGGTACGCAG+CGG - chr1_3:36145010-36145029 None:intergenic 45.0%
GAGTGAGAGCTTGGTATTCA+CGG - chr1_3:36145188-36145207 None:intergenic 45.0%
AAAATTGGGGAAAGCCTCCT+GGG + chr1_3:36145229-36145248 Msa0116780:CDS 45.0%
CAACCTACATTTGGCTACGA+AGG + chr1_3:36145321-36145340 Msa0116780:CDS 45.0%
TCACCTTCGTAGCCAAATGT+AGG - chr1_3:36145327-36145346 None:intergenic 45.0%
ATGATGAGGGCTTGCAGATT+TGG - chr1_3:36145370-36145389 None:intergenic 45.0%
AAATCTGCAAGCCCTCATCA+TGG + chr1_3:36145369-36145388 Msa0116780:CDS 45.0%
GTTCTTCATTTCGGCACACA+CGG + chr1_3:36145441-36145460 Msa0116780:CDS 45.0%
GCTTTCCAGGCATGAATTCA+AGG - chr1_3:36145470-36145489 None:intergenic 45.0%
TGAATTCATGCCTGGAAAGC+AGG + chr1_3:36145470-36145489 Msa0116780:CDS 45.0%
TGTTATCCCGACAGTCTGAT+CGG + chr1_3:36145510-36145529 Msa0116780:CDS 45.0%
ATATTCCCGATCAGACTGTC+GGG - chr1_3:36145519-36145538 None:intergenic 45.0%
CGAAAATGCAGGACTGTACA+AGG + chr1_3:36145638-36145657 Msa0116780:CDS 45.0%
TATCAGTCACTCAAGGACAC+TGG + chr1_3:36145693-36145712 Msa0116780:CDS 45.0%
ATGCAATCTCGACAAGGATG+TGG + chr1_3:36145761-36145780 Msa0116780:CDS 45.0%
CAATGTAGCAACTGCTTCCA+TGG - chr1_3:36145922-36145941 None:intergenic 45.0%
CATGGAAGCAGTTGCTACAT+TGG + chr1_3:36145920-36145939 Msa0116780:CDS 45.0%
CTGAGCTAGTATAGAAGGGA+GGG - chr1_3:36145988-36146007 None:intergenic 45.0%
TCTGAGCTAGTATAGAAGGG+AGG - chr1_3:36145989-36146008 None:intergenic 45.0%
! CAAATAACCGAAGCATCACG+CGG + chr1_3:36146083-36146102 Msa0116780:CDS 45.0%
GCCATGGATTCAGTACTTGT+CGG + chr1_3:36146205-36146224 Msa0116780:CDS 45.0%
!! TCCGACAAGTACTGAATCCA+TGG - chr1_3:36146209-36146228 None:intergenic 45.0%
! TCGGACACCAAATTTTACCG+AGG + chr1_3:36146224-36146243 Msa0116780:CDS 45.0%
! TGAGCTTTTCCCTATCACCT+CGG - chr1_3:36146244-36146263 None:intergenic 45.0%
AAATTTGTAGAGCCAGGACC+TGG + chr1_3:36146350-36146369 Msa0116780:CDS 45.0%
ATCTGTTCCCCACAGTACAA+GGG - chr1_3:36146546-36146565 None:intergenic 45.0%
TATCTGTTCCCCACAGTACA+AGG - chr1_3:36146547-36146566 None:intergenic 45.0%
ATATGGAGAATCCCTTGCTC+AGG + chr1_3:36146577-36146596 Msa0116780:CDS 45.0%
CTTCCGAGGTTATCAGCTAT+CGG - chr1_3:36146626-36146645 None:intergenic 45.0%
GATAGCTGATAACCTCGGAA+GGG + chr1_3:36146625-36146644 Msa0116780:CDS 45.0%
CAAGGCTTACAGGTTCTACA+CGG - chr1_3:36146655-36146674 None:intergenic 45.0%
TAGGTCTTCCAAGCTCTTCA+AGG - chr1_3:36146673-36146692 None:intergenic 45.0%
TTGAAGAGCTTGGAAGACCT+AGG + chr1_3:36146672-36146691 Msa0116780:CDS 45.0%
TGAAGAGCTTGGAAGACCTA+GGG + chr1_3:36146673-36146692 Msa0116780:CDS 45.0%
TCTGGATAGAGCAGTGAAGA+TGG + chr1_3:36146995-36147014 Msa0116780:CDS 45.0%
!! CACTGCTGGTTCGTCTAATT+CGG - chr1_3:36147024-36147043 None:intergenic 45.0%
TTCTCGAACTTCAACCCCTA+GGG - chr1_3:36147087-36147106 None:intergenic 45.0%
CACAGCCAGGTTTATGTTTG+AGG - chr1_3:36147150-36147169 None:intergenic 45.0%
CTCAAACATAAACCTGGCTG+TGG + chr1_3:36147148-36147167 Msa0116780:CDS 45.0%
ATGAAGAATTCTCCACAGCC+AGG - chr1_3:36147163-36147182 None:intergenic 45.0%
TGGCTGTGGAGAATTCTTCA+TGG + chr1_3:36147162-36147181 Msa0116780:CDS 45.0%
!! GCTTTTGATTGTGATGCTCC+TGG + chr1_3:36147233-36147252 Msa0116780:CDS 45.0%
AATTCAAATCTCCTCGGGGA+TGG - chr1_3:36147577-36147596 None:intergenic 45.0%
GCGAAATTCAAATCTCCTCG+GGG - chr1_3:36147581-36147600 None:intergenic 45.0%
GGCGAAATTCAAATCTCCTC+GGG - chr1_3:36147582-36147601 None:intergenic 45.0%
GGGCGAAATTCAAATCTCCT+CGG - chr1_3:36147583-36147602 None:intergenic 45.0%
CCAGAACACAGAGTCTATGT+AGG - chr1_3:36147729-36147748 None:intergenic 45.0%
CCTACATAGACTCTGTGTTC+TGG + chr1_3:36147726-36147745 Msa0116780:intron 45.0%
CAAGTCGAACTGTCTCTGAA+AGG - chr1_3:36147816-36147835 None:intergenic 45.0%
!! CTAGTGGTTATGAGGGTGTT+CGG + chr1_3:36147884-36147903 Msa0116780:CDS 45.0%
!! TAGTGGTTATGAGGGTGTTC+GGG + chr1_3:36147885-36147904 Msa0116780:CDS 45.0%
GGCTTACTAACACAGTTGGA+TGG + chr1_3:36147920-36147939 Msa0116780:CDS 45.0%
CACAACGTTCATTCAAGACG+AGG + chr1_3:36147990-36148009 Msa0116780:CDS 45.0%
GAAGCTGGTGCAAACATTCT+TGG + chr1_3:36148056-36148075 Msa0116780:CDS 45.0%
ACAACAGGGAAAAAGGGGAA+AGG - chr1_3:36148312-36148331 None:intergenic 45.0%
CAGCTGCTGAGACTGATGAT+TGG - chr1_3:36142470-36142489 None:intergenic 50.0%
!! GGACAGGTTGGATGCAGTTT+TGG + chr1_3:36142680-36142699 Msa0116780:CDS 50.0%
GGTGTTTCCATCAATGCCTG+AGG + chr1_3:36142701-36142720 Msa0116780:CDS 50.0%
!! CTCATCACCTCAGGCATTGA+TGG - chr1_3:36142711-36142730 None:intergenic 50.0%
CATCAATGCCTGAGGTGATG+AGG + chr1_3:36142709-36142728 Msa0116780:CDS 50.0%
GCTTGTGAGGACTTTGCCTA+AGG + chr1_3:36142848-36142867 Msa0116780:CDS 50.0%
CTTGGATGATCCTGTCTAGC+AGG - chr1_3:36143495-36143514 None:intergenic 50.0%
CTGCTAGACAGGATCATCCA+AGG + chr1_3:36143493-36143512 Msa0116780:CDS 50.0%
GTTGCATTGCCAGAGCTAGA+TGG + chr1_3:36143639-36143658 Msa0116780:CDS 50.0%
! TCCATTCCTCCATCTAGCTC+TGG - chr1_3:36143651-36143670 None:intergenic 50.0%
! ATGGAGCCGATAGTTTTCGC+TGG + chr1_3:36143666-36143685 Msa0116780:CDS 50.0%
! AGCCGATAGTTTTCGCTGGT+CGG + chr1_3:36143670-36143689 Msa0116780:CDS 50.0%
TCCCGACCAGCGAAAACTAT+CGG - chr1_3:36143675-36143694 None:intergenic 50.0%
TCACGCTCTTCACAAGAGAG+TGG + chr1_3:36144181-36144200 Msa0116780:CDS 50.0%
TTTGCACCAGGGCAATCAGA+TGG + chr1_3:36144210-36144229 Msa0116780:CDS 50.0%
TTGCACCAGGGCAATCAGAT+GGG + chr1_3:36144211-36144230 Msa0116780:CDS 50.0%
TTCAGTTTCCCGCCAGACAA+AGG + chr1_3:36144973-36144992 Msa0116780:CDS 50.0%
CCGCCAGACAAAGGAAATGT+AGG + chr1_3:36144982-36145001 Msa0116780:CDS 50.0%
GAAAATTGGGGAAAGCCTCC+TGG + chr1_3:36145228-36145247 Msa0116780:CDS 50.0%
TGCGGATGGAGAGAATCTGT+TGG + chr1_3:36145260-36145279 Msa0116780:CDS 50.0%
GCTACGAAGGTGATCCTATG+CGG + chr1_3:36145334-36145353 Msa0116780:CDS 50.0%
GGTTCCCTTGAATTCATGCC+TGG + chr1_3:36145462-36145481 Msa0116780:CDS 50.0%
TTCATGCCTGGAAAGCAGGT+AGG + chr1_3:36145474-36145493 Msa0116780:CDS 50.0%
TCATGCCTGGAAAGCAGGTA+GGG + chr1_3:36145475-36145494 Msa0116780:CDS 50.0%
GTTATCCCGACAGTCTGATC+GGG + chr1_3:36145511-36145530 Msa0116780:CDS 50.0%
TGCTGCAAACAACCCTTCAG+AGG + chr1_3:36145557-36145576 Msa0116780:CDS 50.0%
TGGCTATGGTAGCCTCTGAA+GGG - chr1_3:36145572-36145591 None:intergenic 50.0%
TTGGCTATGGTAGCCTCTGA+AGG - chr1_3:36145573-36145592 None:intergenic 50.0%
ATTTGCGTAGCTCCTGCGTT+TGG - chr1_3:36145592-36145611 None:intergenic 50.0%
! TACAGTCCTGCATTTTCGGC+TGG - chr1_3:36145636-36145655 None:intergenic 50.0%
CTCGTCGTATCAGTCACTCA+AGG + chr1_3:36145686-36145705 Msa0116780:CDS 50.0%
CAAGGATGTGGATTTGCCAG+AGG + chr1_3:36145773-36145792 Msa0116780:CDS 50.0%
GATGTGGATTTGCCAGAGGA+GGG + chr1_3:36145777-36145796 Msa0116780:CDS 50.0%
!! GCGAGATCTTGTTGTTGGGA+AGG + chr1_3:36145821-36145840 Msa0116780:CDS 50.0%
CCAATGACATGGAGTCCACA+AGG - chr1_3:36145885-36145904 None:intergenic 50.0%
CCTTGTGGACTCCATGTCAT+TGG + chr1_3:36145882-36145901 Msa0116780:CDS 50.0%
CATAGCTGCACTTGATCGTG+TGG + chr1_3:36145947-36145966 Msa0116780:CDS 50.0%
GCACTTGATCGTGTGGAAGA+AGG + chr1_3:36145954-36145973 Msa0116780:CDS 50.0%
AGCTAGTATAGAAGGGAGGG+AGG - chr1_3:36145985-36146004 None:intergenic 50.0%
AATTGCTCCGCGTGATGCTT+CGG - chr1_3:36146093-36146112 None:intergenic 50.0%
CTCTCCATTGCTGCTGTAGT+AGG - chr1_3:36146449-36146468 None:intergenic 50.0%
AGTACAAGGGCAACTGTCTC+AGG - chr1_3:36146533-36146552 None:intergenic 50.0%
AGACAGTTGCCCTTGTACTG+TGG + chr1_3:36146534-36146553 Msa0116780:CDS 50.0%
GACAGTTGCCCTTGTACTGT+GGG + chr1_3:36146535-36146554 Msa0116780:CDS 50.0%
ACAGTTGCCCTTGTACTGTG+GGG + chr1_3:36146536-36146555 Msa0116780:CDS 50.0%
AATCCCTTGCTCAGGTTCTG+TGG + chr1_3:36146585-36146604 Msa0116780:CDS 50.0%
CATCCACAGAACCTGAGCAA+GGG - chr1_3:36146591-36146610 None:intergenic 50.0%
TCATCCACAGAACCTGAGCA+AGG - chr1_3:36146592-36146611 None:intergenic 50.0%
GCTCAGGTTCTGTGGATGAT+TGG + chr1_3:36146593-36146612 Msa0116780:CDS 50.0%
CGATAGCTGATAACCTCGGA+AGG + chr1_3:36146624-36146643 Msa0116780:CDS 50.0%
CCAAGCTCTTCAAGGCTTAC+AGG - chr1_3:36146665-36146684 None:intergenic 50.0%
CCTGTAAGCCTTGAAGAGCT+TGG + chr1_3:36146662-36146681 Msa0116780:CDS 50.0%
TTAACGACGACGTCAACCCT+AGG - chr1_3:36146692-36146711 None:intergenic 50.0%
GACGTCGTCGTTAATTGCTC+TGG + chr1_3:36146698-36146717 Msa0116780:CDS 50.0%
TTGGAACAAGCTGAAGCCCT+AGG + chr1_3:36147068-36147087 Msa0116780:CDS 50.0%
TGGAACAAGCTGAAGCCCTA+GGG + chr1_3:36147069-36147088 Msa0116780:CDS 50.0%
CTTCTCGAACTTCAACCCCT+AGG - chr1_3:36147088-36147107 None:intergenic 50.0%
AAGTTCGAGAAGCCGCAACA+AGG + chr1_3:36147096-36147115 Msa0116780:CDS 50.0%
AGGATCTTCTCCAATGCCTC+AGG + chr1_3:36147116-36147135 Msa0116780:CDS 50.0%
GTTTGAGGAGTAGGATCCTG+AGG - chr1_3:36147135-36147154 None:intergenic 50.0%
! TTTTCAGTCATGCCTGCACC+AGG - chr1_3:36147254-36147273 None:intergenic 50.0%
GGGAGATTTCCGATGAGTCA+AGG - chr1_3:36147328-36147347 None:intergenic 50.0%
!!! TTTTACCTGGGCATTGGCAG+TGG - chr1_3:36147450-36147469 None:intergenic 50.0%
! TGAAAGGGTGCGTACCTGAA+AGG - chr1_3:36147800-36147819 None:intergenic 50.0%
! CCATTTGGGGTTCAACAGCT+TGG - chr1_3:36147848-36147867 None:intergenic 50.0%
CCAAGCTGTTGAACCCCAAA+TGG + chr1_3:36147845-36147864 Msa0116780:CDS 50.0%
GTGTTCGGGAAATCGAGAAG+AGG + chr1_3:36147899-36147918 Msa0116780:CDS 50.0%
GTTGGATGGAGTGCAACTTC+TGG + chr1_3:36147934-36147953 Msa0116780:CDS 50.0%
GCACAAATCCCAACTCCTTC+AGG + chr1_3:36148034-36148053 Msa0116780:CDS 50.0%
ACCAGCTTCCTGAAGGAGTT+GGG - chr1_3:36148045-36148064 None:intergenic 50.0%
TGTTTGCACCAGCTTCCTGA+AGG - chr1_3:36148052-36148071 None:intergenic 50.0%
TTCTTGGAAGCCAATGGACG+CGG + chr1_3:36148072-36148091 Msa0116780:CDS 50.0%
AAGCCAATGGACGCGGATAT+TGG + chr1_3:36148079-36148098 Msa0116780:CDS 50.0%
AGCCAATGGACGCGGATATT+GGG + chr1_3:36148080-36148099 Msa0116780:CDS 50.0%
TTCCCAATATCCGCGTCCAT+TGG - chr1_3:36148085-36148104 None:intergenic 50.0%
GAGGCAGTTGTACTCAGAAG+TGG + chr1_3:36148131-36148150 Msa0116780:CDS 50.0%
TCTAGCCCTCCGGCGAAAAT+TGG - chr1_3:36143372-36143391 None:intergenic 55.0%
! CGCCGGAGGGCTAGATTTTT+CGG + chr1_3:36143377-36143396 Msa0116780:CDS 55.0%
! GCCGGAGGGCTAGATTTTTC+GGG + chr1_3:36143378-36143397 Msa0116780:CDS 55.0%
CCCCGAAAAATCTAGCCCTC+CGG - chr1_3:36143382-36143401 None:intergenic 55.0%
! CCGGAGGGCTAGATTTTTCG+GGG + chr1_3:36143379-36143398 Msa0116780:CDS 55.0%
!!! AGGGCTAGATTTTTCGGGGC+CGG + chr1_3:36143383-36143402 Msa0116780:CDS 55.0%
GCATTGCCAGAGCTAGATGG+AGG + chr1_3:36143642-36143661 Msa0116780:CDS 55.0%
GCCAGAGCTAGATGGAGGAA+TGG + chr1_3:36143647-36143666 Msa0116780:CDS 55.0%
! GCCGATAGTTTTCGCTGGTC+GGG + chr1_3:36143671-36143690 Msa0116780:CDS 55.0%
AGTGGAGCAGCTTTGCACCA+GGG + chr1_3:36144199-36144218 Msa0116780:CDS 55.0%
TGGCATAGGGAGTGAGAGCT+TGG - chr1_3:36145197-36145216 None:intergenic 55.0%
GCCTCCTGGGAATCTGAATG+CGG + chr1_3:36145242-36145261 Msa0116780:CDS 55.0%
TCCGCATTCAGATTCCCAGG+AGG - chr1_3:36145246-36145265 None:intergenic 55.0%
CCATCCGCATTCAGATTCCC+AGG - chr1_3:36145249-36145268 None:intergenic 55.0%
CCTGGGAATCTGAATGCGGA+TGG + chr1_3:36145246-36145265 Msa0116780:CDS 55.0%
CTCATCCCTACCTGCTTTCC+AGG - chr1_3:36145483-36145502 None:intergenic 55.0%
AGGCTACCATAGCCAAACGC+AGG + chr1_3:36145577-36145596 Msa0116780:CDS 55.0%
GTAGCTCCTGCGTTTGGCTA+TGG - chr1_3:36145586-36145605 None:intergenic 55.0%
ACTCCTCCAGCCGAAAATGC+AGG + chr1_3:36145627-36145646 Msa0116780:CDS 55.0%
! AGTCCTGCATTTTCGGCTGG+AGG - chr1_3:36145633-36145652 None:intergenic 55.0%
GGATGTGGATTTGCCAGAGG+AGG + chr1_3:36145776-36145795 Msa0116780:CDS 55.0%
CATGGAGTCCACAAGGCAAC+AGG - chr1_3:36145878-36145897 None:intergenic 55.0%
TGGGTGGCTCACCAATGACA+TGG - chr1_3:36145896-36145915 None:intergenic 55.0%
GCAACTGCTTCCATGGCTGT+GGG - chr1_3:36145915-36145934 None:intergenic 55.0%
AGCAACTGCTTCCATGGCTG+TGG - chr1_3:36145916-36145935 None:intergenic 55.0%
TTTGTAGAGCCAGGACCTGG+AGG + chr1_3:36146353-36146372 Msa0116780:CDS 55.0%
GGAACAAGCTGAAGCCCTAG+GGG + chr1_3:36147070-36147089 Msa0116780:CDS 55.0%
GGAGTAGGATCCTGAGGCAT+TGG - chr1_3:36147129-36147148 None:intergenic 55.0%
GATTGTGATGCTCCTGGTGC+AGG + chr1_3:36147239-36147258 Msa0116780:CDS 55.0%
TCCCAACTCCTTCAGGAAGC+TGG + chr1_3:36148041-36148060 Msa0116780:CDS 55.0%
CACCAGCTTCCTGAAGGAGT+TGG - chr1_3:36148046-36148065 None:intergenic 55.0%
TGTTGGAGGGCCTGCTAGAC+AGG + chr1_3:36143482-36143501 Msa0116780:CDS 60.0%
GCTGGTCGGGATCCCAAAAC+AGG + chr1_3:36143684-36143703 Msa0116780:CDS 60.0%
GAGTGGAGCAGCTTTGCACC+AGG + chr1_3:36144198-36144217 Msa0116780:CDS 60.0%
CTCAGCCCATCTGATTGCCC+TGG - chr1_3:36144219-36144238 None:intergenic 60.0%
TCACTCAAGGACACTGGCCG+CGG + chr1_3:36145699-36145718 Msa0116780:CDS 60.0%
GGATTTGCCAGAGGAGGGTG+TGG + chr1_3:36145782-36145801 Msa0116780:CDS 60.0%
GAGTCCACAAGGCAACAGGC+GGG - chr1_3:36145874-36145893 None:intergenic 60.0%
GGAGTCCACAAGGCAACAGG+CGG - chr1_3:36145875-36145894 None:intergenic 60.0%
ACTGCTTCCATGGCTGTGGG+TGG - chr1_3:36145912-36145931 None:intergenic 60.0%
TTTCTGATCGGGTCGCCTCC+AGG - chr1_3:36146371-36146390 None:intergenic 60.0%
CTACACGGTTGACCCTTCCG+AGG - chr1_3:36146640-36146659 None:intergenic 60.0%
TACCACCACTGCCAATGCCC+AGG + chr1_3:36147442-36147461 Msa0116780:CDS 60.0%
!! TACCTGGGCATTGGCAGTGG+TGG - chr1_3:36147447-36147466 None:intergenic 60.0%
GGAAGCTCCACACCCTCCTC+TGG - chr1_3:36145792-36145811 None:intergenic 65.0%
GAGTCCCGCCTGTTGCCTTG+TGG + chr1_3:36145867-36145886 Msa0116780:CDS 65.0%
TGGTGAGCCACCCACAGCCA+TGG + chr1_3:36145902-36145921 Msa0116780:CDS 65.0%
ATCGGGTCGCCTCCAGGTCC+TGG - chr1_3:36146365-36146384 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 36142195 36148468 36142195 ID=Msa0116780;Name=Msa0116780
chr1_3 mRNA 36142195 36148468 36142195 ID=Msa0116780-mRNA-1;Parent=Msa0116780;Name=Msa0116780-mRNA-1;_AED=0.05;_eAED=0.27;_QI=0|0.8|0.66|1|1|1|6|286|1367
chr1_3 exon 36142195 36143206 36142195 ID=Msa0116780-mRNA-1:exon:11650;Parent=Msa0116780-mRNA-1
chr1_3 exon 36143355 36143705 36143355 ID=Msa0116780-mRNA-1:exon:11651;Parent=Msa0116780-mRNA-1
chr1_3 exon 36144174 36144256 36144174 ID=Msa0116780-mRNA-1:exon:11652;Parent=Msa0116780-mRNA-1
chr1_3 exon 36144946 36146748 36144946 ID=Msa0116780-mRNA-1:exon:11653;Parent=Msa0116780-mRNA-1
chr1_3 exon 36146987 36147463 36146987 ID=Msa0116780-mRNA-1:exon:11654;Parent=Msa0116780-mRNA-1
chr1_3 exon 36147805 36148468 36147805 ID=Msa0116780-mRNA-1:exon:11655;Parent=Msa0116780-mRNA-1
chr1_3 CDS 36142195 36143206 36142195 ID=Msa0116780-mRNA-1:cds;Parent=Msa0116780-mRNA-1
chr1_3 CDS 36143355 36143705 36143355 ID=Msa0116780-mRNA-1:cds;Parent=Msa0116780-mRNA-1
chr1_3 CDS 36144174 36144256 36144174 ID=Msa0116780-mRNA-1:cds;Parent=Msa0116780-mRNA-1
chr1_3 CDS 36144946 36146748 36144946 ID=Msa0116780-mRNA-1:cds;Parent=Msa0116780-mRNA-1
chr1_3 CDS 36146987 36147463 36146987 ID=Msa0116780-mRNA-1:cds;Parent=Msa0116780-mRNA-1
chr1_3 CDS 36147805 36148182 36147805 ID=Msa0116780-mRNA-1:cds;Parent=Msa0116780-mRNA-1
chr1_3 three_prime_UTR 36148183 36148468 36148183 ID=Msa0116780-mRNA-1:three_prime_utr;Parent=Msa0116780-mRNA-1
Gene Sequence

>Msa0116780

ATGGCTTCATTTTTATCAACACCATTTACTCTACCAAATTCTAAAGTTGATCAACTTTCTTCAGTTGCTCAAAGACATCTTTTTCTTCATTCATTCCTTCCTAAGAAAACCAATTACTATGGTAACTCAAAAGCTTCCTTTAGATTGAAATGCAATGCAATTGGTAATGGTTTGTTCACTCAAACAACTCAAGAAGTTCGTAGAATAGTACCAGAAAACAAGCAAAACTTACCAACAGTGAAAATTGTGTATGTTGTTCTTGAAGCTCAGTACCAATCATCAGTCTCAGCAGCTGTTAGAGAACTCAACAGCAATCAGAATGATGCTTCTTTTGAAGTTGTCGGTTACTTAGTCGAGGAGCTTCGCGACAAATCAACGTACGAAACATTCTGCAAGGATTTAGAAGATGCTAATATCTTCATTGGTTCATTGATTTTTGTTGAGGAGCTAGCACTGAAAGTGAAAGCTGCTGTTGAGAAAGAAAGGGACAGGTTGGATGCAGTTTTGGTGTTTCCATCAATGCCTGAGGTGATGAGGTTGAACAAATTGGGCTCTTTTAGTATGTCACAACTTGGACAATCTAAAAGTCCTTTTTTTCAGCTTTTCAAGAAGAAGAATACTTCTTCAGCTGGTTTTGCTGATAGCATGTTGAAGCTTGTGAGGACTTTGCCTAAGGTTTTGAAGTATTTACCAAGTGATAAAGCTCAAGATGCTAGGCTTTATATCTTGAGTCTACAGTTTTGGCTTGGTGGGTCACCTGATAATTTGCAGAATTTCTTGAAGATGATTTCTGGTTCTTATGTTCCAGCATTGAAAGGTACAAAGATGGAGTATTCTGATCCTGTTTTGTTTTTAGATAATGGAATTTGGCACCCTTTAGCACCTTGTATGTATGATGATGTCAAAGAGTATTTGAATTGGTATGGAACTAGAAGGGATGCTAATGAGAAACTAAAGAGTTCAAATGCACCTGTTGTTGGTTTGGTTTTGCAAAGGAGTCATATTGTTACTGGTGCTAAGGTTATTCCAATTTTCGCCGGAGGGCTAGATTTTTCGGGGCCGGTTGAGAAGTTCTTCATTGATCCTATTACTAAGAAACCATTTGTGAATTCTGTGATATCTCTCACTGGATTTGCTCTTGTTGGAGGGCCTGCTAGACAGGATCATCCAAGGGCTATTGAAGCTTTGATGAAGCTTGATGTTCCTTATATTGTTGCTTTGCCACTGGTTTTCCAGACAACTGAAGAGTGGTTGAATAGTACTTTGGGTTTGCATCCAATTCAAGTTGCTCTTCAAGTTGCATTGCCAGAGCTAGATGGAGGAATGGAGCCGATAGTTTTCGCTGGTCGGGATCCCAAAACAGGAAAATCTCACGCTCTTCACAAGAGAGTGGAGCAGCTTTGCACCAGGGCAATCAGATGGGCTGAGTTGAAAAGAAAAACAAAGGAAGACAAGAAACTAGCAATCACTGTCTTCAGTTTCCCGCCAGACAAAGGAAATGTAGGAACCGCTGCGTACCTAAACGTTTTCTCCTCCATTTTCTCTGTTCTAAAAGAACTTCAAAGTGATGGTTACAATGTTGAAGGTCTTCCCGAGACTTCAGAAGCATTGATTGAAGATATATTACATGACAAAGAAGCACAATTCAGCAGCCCAAATCTCAACATTGCTTACAAAATGAACGTCCGTGAATACCAAGCTCTCACTCCCTATGCCACAGCATTAGAAGAAAATTGGGGAAAGCCTCCTGGGAATCTGAATGCGGATGGAGAGAATCTGTTGGTATATGGTAAGCAATATGGTAATGTATTCATAGGTGTTCAACCTACATTTGGCTACGAAGGTGATCCTATGCGGTTACTTTTCTCCAAATCTGCAAGCCCTCATCATGGTTTTGCAGCATATTACTCTTTTGTCGAGAAAATTTTCAAAGCTGATGCTGTTCTTCATTTCGGCACACACGGTTCCCTTGAATTCATGCCTGGAAAGCAGGTAGGGATGAGTGATGTATGTTATCCCGACAGTCTGATCGGGAATATTCCAAATGTCTATTACTATGCTGCAAACAACCCTTCAGAGGCTACCATAGCCAAACGCAGGAGCTACGCAAATACCATAAGCTATCTTACTCCTCCAGCCGAAAATGCAGGACTGTACAAGGGTCTTAAGCAGTTAAGTGAACTCATCTCGTCGTATCAGTCACTCAAGGACACTGGCCGCGGTCAACAAATTGTGAGTTCAATTATTAGCACGGCTAAACAATGCAATCTCGACAAGGATGTGGATTTGCCAGAGGAGGGTGTGGAGCTTCCCACTAAAGAGCGAGATCTTGTTGTTGGGAAGGTGTATGCTAAGATCATGGAGATTGAGTCCCGCCTGTTGCCTTGTGGACTCCATGTCATTGGTGAGCCACCCACAGCCATGGAAGCAGTTGCTACATTGGTGAACATAGCTGCACTTGATCGTGTGGAAGAAGGTATTTCCTCCCTCCCTTCTATACTAGCTCAGAGTGTAGGAAGAAACATAGAGGAAATTTATAGAAGCAGTGACAAAGGAGTATTAAAGGATGTAGAGCTTCTTCGGCAAATAACCGAAGCATCACGCGGAGCAATTACTTCCTTTGTAGAGCGCACTACTAATAGTAAGGGTCAAGTTGTAGATGTATCTAATAAACTTACCTCCATCCTTGGATTCGGCATAAACGAGCCATGGATTCAGTACTTGTCGGACACCAAATTTTACCGAGGTGATAGGGAAAAGCTCAGAATTTTGTTTGAGTACTTGGGAGAATGTTTGAGGTTAATTGTAGCTGATAATGAAGTGGGAAGTTTAAAACAAGCCTTGGAAGGTAAATTTGTAGAGCCAGGACCTGGAGGCGACCCGATCAGAAACCCTAAAGTTTTACCAACAGGAAAGAATATTCATGCCCTGGATCCACAATCTATTCCTACTACAGCAGCAATGGAGAGTGCCAAAATAGTGGTAGAGAGATTGCTTGAAAGGCAAAAAATTGATAATGGAGGAAAGTATCCTGAGACAGTTGCCCTTGTACTGTGGGGAACAGATAATATTAAGACATATGGAGAATCCCTTGCTCAGGTTCTGTGGATGATTGGTGTAAATCCGATAGCTGATAACCTCGGAAGGGTCAACCGTGTAGAACCTGTAAGCCTTGAAGAGCTTGGAAGACCTAGGGTTGACGTCGTCGTTAATTGCTCTGGAGTATTCAGAGACCTTTTCATCAATCAGATGAATCTTCTGGATAGAGCAGTGAAGATGGTTGCCGAATTAGACGAACCAGCAGTGATGAACTATGTAAGGAAGCATGCATTGGAACAAGCTGAAGCCCTAGGGGTTGAAGTTCGAGAAGCCGCAACAAGGATCTTCTCCAATGCCTCAGGATCCTACTCCTCAAACATAAACCTGGCTGTGGAGAATTCTTCATGGAATGATGAGAAGCAGCTCCAAGACATGTACCTTAGCAGAAAGTCTTTTGCTTTTGATTGTGATGCTCCTGGTGCAGGCATGACTGAAAAAAGACAAGTCTTTGAGATGGCTCTCAGCACAGCAGACGCCACTTTCCAAAACCTTGACTCATCGGAAATCTCCCTCACTGATGTCAGTCATTACTTTGATTCAGACCCCACTAACCTTGTTCAAAATTTAAGGAAAGATGGGAAGAAGCCAAGTGCATATATTGCTGATACCACCACTGCCAATGCCCAGGTACGCACCCTTTCAGAGACAGTTCGACTTGATGCAAGAACCAAGCTGTTGAACCCCAAATGGTATGAAGGCATGTTATCTAGTGGTTATGAGGGTGTTCGGGAAATCGAGAAGAGGCTTACTAACACAGTTGGATGGAGTGCAACTTCTGGACAAGTTGACAATTGGGTGTATGAAGAAGCCAACACAACGTTCATTCAAGACGAGGAAATGTTGAAGAAGCTGATGAGCACAAATCCCAACTCCTTCAGGAAGCTGGTGCAAACATTCTTGGAAGCCAATGGACGCGGATATTGGGAAACTGAAGAAGAAAACATTGAGAAGTTGAGGCAGTTGTACTCAGAAGTGGAAGATAAAATTGAAGGCATTGATCGCTGA
Protein sequence

>Msa0116780

MASFLSTPFTLPNSKVDQLSSVAQRHLFLHSFLPKKTNYYGNSKASFRLKCNAIGNGLFTQTTQEVRRIVPENKQNLPTVKIVYVVLEAQYQSSVSAAVRELNSNQNDASFEVVGYLVEELRDKSTYETFCKDLEDANIFIGSLIFVEELALKVKAAVEKERDRLDAVLVFPSMPEVMRLNKLGSFSMSQLGQSKSPFFQLFKKKNTSSAGFADSMLKLVRTLPKVLKYLPSDKAQDARLYILSLQFWLGGSPDNLQNFLKMISGSYVPALKGTKMEYSDPVLFLDNGIWHPLAPCMYDDVKEYLNWYGTRRDANEKLKSSNAPVVGLVLQRSHIVTGAKVIPIFAGGLDFSGPVEKFFIDPITKKPFVNSVISLTGFALVGGPARQDHPRAIEALMKLDVPYIVALPLVFQTTEEWLNSTLGLHPIQVALQVALPELDGGMEPIVFAGRDPKTGKSHALHKRVEQLCTRAIRWAELKRKTKEDKKLAITVFSFPPDKGNVGTAAYLNVFSSIFSVLKELQSDGYNVEGLPETSEALIEDILHDKEAQFSSPNLNIAYKMNVREYQALTPYATALEENWGKPPGNLNADGENLLVYGKQYGNVFIGVQPTFGYEGDPMRLLFSKSASPHHGFAAYYSFVEKIFKADAVLHFGTHGSLEFMPGKQVGMSDVCYPDSLIGNIPNVYYYAANNPSEATIAKRRSYANTISYLTPPAENAGLYKGLKQLSELISSYQSLKDTGRGQQIVSSIISTAKQCNLDKDVDLPEEGVELPTKERDLVVGKVYAKIMEIESRLLPCGLHVIGEPPTAMEAVATLVNIAALDRVEEGISSLPSILAQSVGRNIEEIYRSSDKGVLKDVELLRQITEASRGAITSFVERTTNSKGQVVDVSNKLTSILGFGINEPWIQYLSDTKFYRGDREKLRILFEYLGECLRLIVADNEVGSLKQALEGKFVEPGPGGDPIRNPKVLPTGKNIHALDPQSIPTTAAMESAKIVVERLLERQKIDNGGKYPETVALVLWGTDNIKTYGESLAQVLWMIGVNPIADNLGRVNRVEPVSLEELGRPRVDVVVNCSGVFRDLFINQMNLLDRAVKMVAELDEPAVMNYVRKHALEQAEALGVEVREAATRIFSNASGSYSSNINLAVENSSWNDEKQLQDMYLSRKSFAFDCDAPGAGMTEKRQVFEMALSTADATFQNLDSSEISLTDVSHYFDSDPTNLVQNLRKDGKKPSAYIADTTTANAQVRTLSETVRLDARTKLLNPKWYEGMLSSGYEGVREIEKRLTNTVGWSATSGQVDNWVYEEANTTFIQDEEMLKKLMSTNPNSFRKLVQTFLEANGRGYWETEEENIEKLRQLYSEVEDKIEGIDR*