Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0088290 | A0A072VQG9 | 95.317 | 363 | 17 | 0 | 1 | 363 | 1 | 363 | 0.0 | 718 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0011410 | Msa0088290 | -0.803842 | 2.874468e-49 | -8.615850e-47 |
| Msa0074860 | Msa0088290 | -0.801134 | 1.039010e-48 | -8.615850e-47 |
| Msa0088290 | Msa0179570 | 0.918061 | 2.479225e-86 | -8.615850e-47 |
| Msa0088290 | Msa0186240 | 0.800266 | 1.561991e-48 | -8.615850e-47 |
| Msa0088290 | Msa0212950 | -0.802105 | 6.569990e-49 | -8.615850e-47 |
| Msa0088290 | Msa0224870 | 0.852421 | 4.667994e-61 | -8.615850e-47 |
| Msa0088290 | Msa0246140 | 0.805063 | 1.599522e-49 | -8.615850e-47 |
| Msa0088290 | Msa0253230 | -0.812389 | 4.345058e-51 | -8.615850e-47 |
| Msa0088290 | Msa0259770 | -0.820166 | 7.918330e-53 | -8.615850e-47 |
| Msa0088290 | Msa0267700 | 0.812653 | 3.804263e-51 | -8.615850e-47 |
| Msa0088290 | Msa0294200 | 0.801136 | 1.038063e-48 | -8.615850e-47 |
| Msa0088290 | Msa0305440 | -0.809971 | 1.453647e-50 | -8.615850e-47 |
| Msa0088290 | Msa0319680 | 0.816924 | 4.303290e-52 | -8.615850e-47 |
| Msa0088290 | Msa0320170 | 0.811647 | 6.304765e-51 | -8.615850e-47 |
| Msa0088290 | Msa0345890 | 0.805224 | 1.480355e-49 | -8.615850e-47 |
| Msa0088290 | Msa0402800 | 0.801261 | 9.788380e-49 | -8.615850e-47 |
| Msa0088290 | Msa0434400 | 0.806722 | 7.166630e-50 | -8.615850e-47 |
| Msa0088290 | Msa0449500 | 0.812301 | 4.542169e-51 | -8.615850e-47 |
| Msa0088290 | Msa0480530 | 0.813762 | 2.172173e-51 | -8.615850e-47 |
| Msa0088290 | Msa0480540 | 0.812966 | 3.248446e-51 | -8.615850e-47 |
| Msa0088290 | Msa0480550 | 0.810084 | 1.374123e-50 | -8.615850e-47 |
| Msa0088290 | Msa0497680 | 0.801788 | 7.630848e-49 | -8.615850e-47 |
| Msa0088290 | Msa0497690 | 0.835912 | 1.273080e-56 | -8.615850e-47 |
| Msa0088290 | Msa0522140 | 0.800556 | 1.363789e-48 | -8.615850e-47 |
| Msa0088290 | Msa0522170 | 0.806600 | 7.602566e-50 | -8.615850e-47 |
| Msa0088290 | Msa0531050 | 0.808286 | 3.337163e-50 | -8.615850e-47 |
| Msa0088290 | Msa0534610 | 0.807974 | 3.888796e-50 | -8.615850e-47 |
| Msa0088290 | Msa0557440 | -0.811187 | 7.938051e-51 | -8.615850e-47 |
| Msa0088290 | Msa0565180 | 0.808430 | 3.110001e-50 | -8.615850e-47 |
| Msa0088290 | Msa0590810 | 0.811185 | 7.945806e-51 | -8.615850e-47 |
| Msa0088290 | Msa0631130 | 0.801840 | 7.448254e-49 | -8.615850e-47 |
| Msa0088290 | Msa0657340 | 0.821445 | 4.021955e-53 | -8.615850e-47 |
| Msa0088290 | Msa0669350 | 0.816779 | 4.638260e-52 | -8.615850e-47 |
| Msa0088290 | Msa0675630 | 0.814133 | 1.798917e-51 | -8.615850e-47 |
| Msa0088290 | Msa0695250 | -0.810314 | 1.225702e-50 | -8.615850e-47 |
| Msa0088290 | Msa0701430 | 0.831157 | 1.957313e-55 | -8.615850e-47 |
| Msa0088290 | Msa0731580 | 0.806441 | 8.214539e-50 | -8.615850e-47 |
| Msa0088290 | Msa0744540 | 0.813482 | 2.502740e-51 | -8.615850e-47 |
| Msa0088290 | Msa0744550 | 0.816978 | 4.184917e-52 | -8.615850e-47 |
| Msa0088290 | Msa0744560 | 0.811628 | 6.365273e-51 | -8.615850e-47 |
| Msa0088290 | Msa0744710 | 0.805900 | 1.067459e-49 | -8.615850e-47 |
| Msa0088290 | Msa0826240 | 0.807704 | 4.439295e-50 | -8.615850e-47 |
| Msa0088290 | Msa0826380 | 0.808881 | 2.490551e-50 | -8.615850e-47 |
| Msa0088290 | Msa0826450 | 0.809942 | 1.474709e-50 | -8.615850e-47 |
| Msa0088290 | Msa0829250 | -0.803572 | 3.269987e-49 | -8.615850e-47 |
| Msa0088290 | Msa0829990 | 0.805511 | 1.288882e-49 | -8.615850e-47 |
| Msa0088290 | Msa0833640 | 0.808834 | 2.548456e-50 | -8.615850e-47 |
| Msa0088290 | Msa0865820 | 0.804140 | 2.492142e-49 | -8.615850e-47 |
| Msa0088290 | Msa0873910 | 0.805333 | 1.404319e-49 | -8.615850e-47 |
| Msa0088290 | Msa0905570 | 0.821625 | 3.656104e-53 | -8.615850e-47 |
| Msa0088290 | Msa0945160 | -0.802223 | 6.211389e-49 | -8.615850e-47 |
| Msa0088290 | Msa0956600 | -0.802504 | 5.436187e-49 | -8.615850e-47 |
| Msa0088290 | Msa0966580 | 0.807202 | 5.670508e-50 | -8.615850e-47 |
| Msa0088290 | Msa0975960 | 0.808577 | 2.892500e-50 | -8.615850e-47 |
| Msa0088290 | Msa1003730 | 0.805336 | 1.402567e-49 | -8.615850e-47 |
| Msa0088290 | Msa1030210 | 0.805163 | 1.524297e-49 | -8.615850e-47 |
| Msa0088290 | Msa1035050 | 0.819998 | 8.650404e-53 | -8.615850e-47 |
| Msa0088290 | Msa1075090 | 0.835422 | 1.693637e-56 | -8.615850e-47 |
| Msa0088290 | Msa1107220 | 0.805276 | 1.443414e-49 | -8.615850e-47 |
| Msa0088290 | Msa1107250 | 0.806782 | 6.958758e-50 | -8.615850e-47 |
| Msa0088290 | Msa1110900 | 0.818781 | 1.638586e-52 | -8.615850e-47 |
| Msa0088290 | Msa1130150 | -0.805526 | 1.279501e-49 | -8.615850e-47 |
| Msa0088290 | Msa1150740 | 0.803364 | 3.610405e-49 | -8.615850e-47 |
| Msa0088290 | Msa1150760 | 0.804901 | 1.728835e-49 | -8.615850e-47 |
| Msa0088290 | Msa1185270 | 0.805495 | 1.298332e-49 | -8.615850e-47 |
| Msa0088290 | Msa1199540 | -0.807657 | 4.541030e-50 | -8.615850e-47 |
| Msa0088290 | Msa1202110 | 0.832919 | 7.182657e-56 | -8.615850e-47 |
| Msa0088290 | Msa1202470 | 0.801737 | 7.819527e-49 | -8.615850e-47 |
| Msa0088290 | Msa1212150 | -0.808016 | 3.808700e-50 | -8.615850e-47 |
| Msa0088290 | Msa1239210 | 0.807211 | 5.646062e-50 | -8.615850e-47 |
| Msa0088290 | Msa1254870 | 0.829343 | 5.429276e-55 | -8.615850e-47 |
| Msa0088290 | Msa1328430 | 0.826863 | 2.147485e-54 | -8.615850e-47 |
| Msa0088290 | Msa1333220 | -0.810895 | 9.179182e-51 | -8.615850e-47 |
| Msa0088290 | Msa1386910 | -0.806321 | 8.706005e-50 | -8.615850e-47 |
| Msa0088290 | Msa1395200 | -0.806224 | 9.126786e-50 | -8.615850e-47 |
| Msa0088290 | Msa1410480 | -0.800402 | 1.465843e-48 | -8.615850e-47 |
| Msa0088290 | Msa1410500 | -0.800164 | 1.638987e-48 | -8.615850e-47 |
| Msa0088290 | Msa1415510 | -0.810211 | 1.290260e-50 | -8.615850e-47 |
| Msa0088290 | Msa1459920 | 0.800005 | 1.765637e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0088290 | MtrunA17_Chr1g0205481 | 95.055 | 364 | 17 | 1 | 1 | 363 | 1 | 364 | 0.0 | 714 |
| Msa0088290 | MtrunA17_Chr1g0205491 | 81.044 | 364 | 67 | 2 | 1 | 362 | 1 | 364 | 0.0 | 603 |
| Msa0088290 | MtrunA17_Chr1g0160271 | 70.330 | 364 | 69 | 2 | 1 | 363 | 1 | 326 | 0.0 | 508 |
| Msa0088290 | MtrunA17_Chr1g0160261 | 58.986 | 217 | 38 | 1 | 52 | 268 | 1 | 166 | 3.00e-75 | 231 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0088290 | AT3G54970.1 | 47.934 | 363 | 171 | 7 | 1 | 358 | 1 | 350 | 4.57e-106 | 315 |
| Msa0088290 | AT3G54970.4 | 48.718 | 312 | 145 | 6 | 52 | 358 | 1 | 302 | 1.55e-87 | 266 |
| Msa0088290 | AT3G54970.2 | 49.000 | 300 | 136 | 6 | 1 | 296 | 1 | 287 | 8.95e-86 | 262 |
| Msa0088290 | AT3G54970.6 | 48.837 | 301 | 137 | 6 | 1 | 297 | 1 | 288 | 1.46e-85 | 261 |
| Msa0088290 | AT3G54970.5 | 45.956 | 272 | 130 | 6 | 1 | 268 | 1 | 259 | 6.59e-68 | 214 |
| Msa0088290 | AT3G54970.3 | 50.000 | 250 | 111 | 5 | 52 | 297 | 1 | 240 | 2.68e-67 | 213 |
Find 102 sgRNAs with CRISPR-Local
Find 243 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AACTCTTGTTACTGGTAATT+TGG | 0.120632 | 1_2:-69393063 | Msa0088290:CDS |
| AGTTTCCAAGCTGGCAAATT+TGG | 0.216666 | 1_2:+69393176 | None:intergenic |
| CATGTACATATGTTACTTAT+TGG | 0.218165 | 1_2:+69390474 | None:intergenic |
| ACTTATGTTCCTCCTCAATT+TGG | 0.238078 | 1_2:-69392966 | Msa0088290:CDS |
| TTCCTCCTCAATTTGGTATT+CGG | 0.238577 | 1_2:-69392959 | Msa0088290:CDS |
| GTGCTTCATGCTTGATGTTT+TGG | 0.241820 | 1_2:-69393304 | Msa0088290:CDS |
| GGGAAAGCCCCGTCTGATTA+TGG | 0.267527 | 1_2:-69391933 | Msa0088290:CDS |
| TATCTGTGTTTGAATAAATT+AGG | 0.281711 | 1_2:-69390075 | Msa0088290:three_prime_UTR |
| ATCAGTGATGGTGTTCTTCC+AGG | 0.297425 | 1_2:-69391876 | Msa0088290:CDS |
| ATCATTACAACTCTTGTTAC+TGG | 0.301146 | 1_2:-69393071 | Msa0088290:CDS |
| CATTTGGCTGTTGGCGGCTA+TGG | 0.301439 | 1_2:-69392924 | Msa0088290:CDS |
| TCCTCCTCAATTTGGTATTC+GGG | 0.303663 | 1_2:-69392958 | Msa0088290:CDS |
| TATAGATAAATCAACTTCTT+AGG | 0.305854 | 1_2:-69390242 | Msa0088290:three_prime_UTR |
| GCAACATGCAGATAGTATTC+AGG | 0.308908 | 1_2:-69390980 | Msa0088290:CDS |
| CATGGTCAAAACATGAAATC+TGG | 0.311226 | 1_2:-69391500 | Msa0088290:CDS |
| ACATATGTTTGCTTAATTAG+AGG | 0.317335 | 1_2:+69390189 | None:intergenic |
| GGTCCATGATATATCCTTCC+AGG | 0.320534 | 1_2:+69390924 | None:intergenic |
| TTTCATCCCAGCAAAGGTTT+AGG | 0.328982 | 1_2:+69390443 | None:intergenic |
| GACACTTGTTAACGATTCAT+TGG | 0.337668 | 1_2:-69393144 | Msa0088290:CDS |
| ATCTACTCATTGAGAAACTA+TGG | 0.346695 | 1_2:+69390361 | None:intergenic |
| ACTAGTTGGCGTATTATTCC+TGG | 0.368986 | 1_2:+69391858 | None:intergenic |
| TGAAGATCCTAAACCTTTGC+TGG | 0.374367 | 1_2:-69390450 | Msa0088290:three_prime_UTR |
| TCGGGGAAATGGTGAACATT+TGG | 0.391554 | 1_2:-69392940 | Msa0088290:CDS |
| AAACCTTTGCTGGGATGAAA+TGG | 0.395756 | 1_2:-69390440 | Msa0088290:three_prime_UTR |
| CAATTTGGTATTCGGGGAAA+TGG | 0.396980 | 1_2:-69392951 | Msa0088290:CDS |
| GTCTGTAACTGTGCTATAAC+TGG | 0.400062 | 1_2:-69390098 | Msa0088290:three_prime_UTR |
| CAGACATGATATCGGTAAAC+TGG | 0.400792 | 1_2:+69390310 | None:intergenic |
| TGTCACCAAATTTGCCAGCT+TGG | 0.405069 | 1_2:-69393181 | Msa0088290:CDS |
| TAGGATTCGGTTTCCGATGA+TGG | 0.405731 | 1_2:-69391954 | Msa0088290:CDS |
| TTTAAGATATCTCTTCAGTA+AGG | 0.413390 | 1_2:-69393961 | Msa0088290:CDS |
| GGATATATCATGGACCAAAA+AGG | 0.416592 | 1_2:-69390917 | Msa0088290:CDS |
| GAACTGTTGCTGTCTTATAA+TGG | 0.422416 | 1_2:-69392648 | Msa0088290:CDS |
| TGCACTTGTGCAGGGTATGC+AGG | 0.429202 | 1_2:-69391557 | Msa0088290:intron |
| GGTTATGGAGAAAGCAACTT+TGG | 0.430081 | 1_2:-69390505 | Msa0088290:CDS |
| CAGCTGCAAAATATTCAGAT+TGG | 0.435154 | 1_2:-69392890 | Msa0088290:CDS |
| ATGTTGCTAACATGGCCTTT+TGG | 0.436630 | 1_2:+69390213 | None:intergenic |
| GTCTTTCTTGAAGCTCATCC+AGG | 0.445380 | 1_2:-69393900 | Msa0088290:intron |
| AGACACACAATCATAAATCT+AGG | 0.451560 | 1_2:+69390117 | None:intergenic |
| AGCTGCAAAATATTCAGATT+GGG | 0.452477 | 1_2:-69392889 | Msa0088290:CDS |
| TTAGGATAAAACAGAATTTG+TGG | 0.457122 | 1_2:-69390057 | Msa0088290:three_prime_UTR |
| CTAATTAAGCAAACATATGT+TGG | 0.461263 | 1_2:-69390186 | Msa0088290:three_prime_UTR |
| ATGTATACGCCAACTGAAGC+GGG | 0.466676 | 1_2:+69390392 | None:intergenic |
| TCTTGTTACTGGTAATTTGG+AGG | 0.471836 | 1_2:-69393060 | Msa0088290:CDS |
| GGAAGAACACCATCACTGAT+AGG | 0.475333 | 1_2:+69391879 | None:intergenic |
| ATTTGGCTGTTGGCGGCTAT+GGG | 0.475928 | 1_2:-69392923 | Msa0088290:CDS |
| CAAAATATTCAGATTGGGTA+AGG | 0.477505 | 1_2:-69392884 | Msa0088290:intron |
| AAGTTGTTCAGACATGATAT+CGG | 0.485001 | 1_2:+69390302 | None:intergenic |
| GAGTAAATGCAGGATGGACC+AGG | 0.497705 | 1_2:-69390826 | Msa0088290:intron |
| AGGATTCGGTTTCCGATGAT+GGG | 0.501749 | 1_2:-69391953 | Msa0088290:CDS |
| TAATTAAGCAAACATATGTT+GGG | 0.506412 | 1_2:-69390185 | Msa0088290:three_prime_UTR |
| AACAACTTAACGAATAAGTC+AGG | 0.506651 | 1_2:-69390287 | Msa0088290:three_prime_UTR |
| GATGATCACAACTTTAATCC+AGG | 0.513020 | 1_2:-69390803 | Msa0088290:intron |
| ATGGTCAAAACATGAAATCT+GGG | 0.513865 | 1_2:-69391499 | Msa0088290:CDS |
| CTTCTTAGGCCACCTCCAAA+AGG | 0.515254 | 1_2:-69390228 | Msa0088290:three_prime_UTR |
| TGTTAACGATTCATTGGAGA+AGG | 0.518710 | 1_2:-69393138 | Msa0088290:CDS |
| ATGGAGAAAGCAACTTTGGA+AGG | 0.520760 | 1_2:-69390501 | Msa0088290:CDS |
| AAACCTGGAAGGATATATCA+TGG | 0.523522 | 1_2:-69390927 | Msa0088290:CDS |
| TTAGAGGCATGTTGCTAACA+TGG | 0.524435 | 1_2:+69390205 | None:intergenic |
| AATGGTGAACATTTGGCTGT+TGG | 0.529164 | 1_2:-69392933 | Msa0088290:CDS |
| GTTTCTCAATGAGTAGATGA+TGG | 0.531257 | 1_2:-69390356 | Msa0088290:three_prime_UTR |
| TGATGCTGGTCCGATCTGAT+TGG | 0.534555 | 1_2:-69390150 | Msa0088290:three_prime_UTR |
| TGGGCTGATTGCCATTCTGT+TGG | 0.539164 | 1_2:+69390955 | None:intergenic |
| GTCGAGAAGTTGCTCCATCA+TGG | 0.539467 | 1_2:-69391518 | Msa0088290:CDS |
| GGTGAACATTTGGCTGTTGG+CGG | 0.542329 | 1_2:-69392930 | Msa0088290:CDS |
| TGGCTGTTGGCGGCTATGGG+AGG | 0.546410 | 1_2:-69392920 | Msa0088290:CDS |
| TGCAATGCAAGTTTCCAAGC+TGG | 0.556576 | 1_2:+69393167 | None:intergenic |
| AGCAACAGTTCTGTCACTGA+TGG | 0.558246 | 1_2:+69392660 | None:intergenic |
| TTAAGATATCTCTTCAGTAA+GGG | 0.558486 | 1_2:-69393960 | Msa0088290:CDS |
| TTTCCCCGAATACCAAATTG+AGG | 0.562586 | 1_2:+69392954 | None:intergenic |
| AGATATCTTAAACTTGACAT+TGG | 0.564311 | 1_2:+69393972 | None:intergenic |
| AACCATACTCAAGTACTAGT+TGG | 0.567061 | 1_2:+69391844 | None:intergenic |
| CAATAAGTAACATATGTACA+TGG | 0.567230 | 1_2:-69390473 | Msa0088290:CDS |
| TGTCCATTTCATCCCAGCAA+AGG | 0.567939 | 1_2:+69390437 | None:intergenic |
| ATGTCATTGCAGATAGCTTG+AGG | 0.568100 | 1_2:-69391008 | Msa0088290:intron |
| AGACGGGGCTTTCCCATCAT+CGG | 0.568285 | 1_2:+69391941 | None:intergenic |
| ATTAAAGTTGTGATCATCCC+TGG | 0.570286 | 1_2:+69390808 | None:intergenic |
| TGCAGGGTATGCAGGAGTGA+AGG | 0.571410 | 1_2:-69391549 | Msa0088290:intron |
| AATCAGCCCATTCTAAAACC+TGG | 0.574405 | 1_2:-69390942 | Msa0088290:CDS |
| GTATTCAGGTTCCAACAGAA+TGG | 0.575665 | 1_2:-69390966 | Msa0088290:CDS |
| AATGTATACGCCAACTGAAG+CGG | 0.583333 | 1_2:+69390391 | None:intergenic |
| AACAGTTCTGTCACTGATGG+AGG | 0.583762 | 1_2:+69392663 | None:intergenic |
| CCTCCTCAATTTGGTATTCG+GGG | 0.594882 | 1_2:-69392957 | Msa0088290:CDS |
| ATGATGGAAATGTAATCACT+TGG | 0.596142 | 1_2:-69390340 | Msa0088290:three_prime_UTR |
| AGCCCATTCTAAAACCTGGA+AGG | 0.604355 | 1_2:-69390938 | Msa0088290:CDS |
| GAACATCTGAGGTGTGTGAA+AGG | 0.607334 | 1_2:+69393934 | None:intergenic |
| GAAGATCCTAAACCTTTGCT+GGG | 0.615855 | 1_2:-69390449 | Msa0088290:three_prime_UTR |
| CAGACAGCTCCTATCAGTGA+TGG | 0.620267 | 1_2:-69391888 | Msa0088290:CDS |
| ATGGAGCAACTTCTCGACAT+GGG | 0.621778 | 1_2:+69391523 | None:intergenic |
| GATGGAGCAACTTCTCGACA+TGG | 0.624453 | 1_2:+69391522 | None:intergenic |
| TCAGATTTAAATATGAGCTG+AGG | 0.626076 | 1_2:+69393227 | None:intergenic |
| ATGCAGGATTAGGAAGACAA+TGG | 0.629546 | 1_2:-69392697 | Msa0088290:intron |
| AATGGTGATCAAATACTCGA+AGG | 0.638330 | 1_2:-69392630 | Msa0088290:CDS |
| TGTATACGCCAACTGAAGCG+GGG | 0.639314 | 1_2:+69390393 | None:intergenic |
| GCTGGCAAATTTGGTGACAA+TGG | 0.641423 | 1_2:+69393185 | None:intergenic |
| CCCCGAATACCAAATTGAGG+AGG | 0.643632 | 1_2:+69392957 | None:intergenic |
| GTATACGCCAACTGAAGCGG+GGG | 0.660242 | 1_2:+69390394 | None:intergenic |
| CAGTTACAGACCAATCAGAT+CGG | 0.662133 | 1_2:+69390140 | None:intergenic |
| AGTAAATGCAGGATGGACCA+GGG | 0.672480 | 1_2:-69390825 | Msa0088290:intron |
| ACACACCTCAGATGTTCCTG+CGG | 0.686527 | 1_2:-69393928 | Msa0088290:CDS |
| TTTATTTCCATAATCAGACG+GGG | 0.699217 | 1_2:+69391926 | None:intergenic |
| GTCAAAACATGAAATCTGGG+AGG | 0.703539 | 1_2:-69391496 | Msa0088290:CDS |
| TGCATGTGAGACTATATCTG+AGG | 0.711093 | 1_2:-69393030 | Msa0088290:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTATTTTATCTTTTGTTAT+TGG | - | chr1_2:69390460-69390479 | Msa0088290:exon | 10.0% |
| !! | TTACTTTATACTTATTTATA+TGG | - | chr1_2:69392090-69392109 | Msa0088290:intron | 10.0% |
| !! | TAACTTATATTAGAACAATT+TGG | - | chr1_2:69390436-69390455 | Msa0088290:three_prime_UTR | 15.0% |
| !! | TTAATCATTATAAATAGGTA+TGG | + | chr1_2:69391782-69391801 | None:intergenic | 15.0% |
| !!! | GGTTTTTAATCATTATAAAT+AGG | + | chr1_2:69391787-69391806 | None:intergenic | 15.0% |
| !! | TTGTAAATAACATAAAATTC+TGG | + | chr1_2:69392375-69392394 | None:intergenic | 15.0% |
| !!! | GAATTTTATGTTATTTACAA+TGG | - | chr1_2:69392375-69392394 | Msa0088290:intron | 15.0% |
| !!! | TAATTTATTTCTGTAACTTT+TGG | + | chr1_2:69392461-69392480 | None:intergenic | 15.0% |
| !!! | ATATTATTTTGTTTCTGTTT+TGG | + | chr1_2:69393853-69393872 | None:intergenic | 15.0% |
| !!! | CAAAATTTGAGATAATTACA+GGG | + | chr1_2:69390583-69390602 | None:intergenic | 20.0% |
| !!! | ACAAAATTTGAGATAATTAC+AGG | + | chr1_2:69390584-69390603 | None:intergenic | 20.0% |
| !!! | ATCAACTTTTTTTCTTTTTC+AGG | - | chr1_2:69390756-69390775 | Msa0088290:intron | 20.0% |
| !! | ATTGTTAGAATATTAAAGCA+TGG | + | chr1_2:69391695-69391714 | None:intergenic | 20.0% |
| !!! | TTCAAATTGTTTTGGATTAA+TGG | - | chr1_2:69391813-69391832 | Msa0088290:intron | 20.0% |
| !! | AGTAAATTCCTACTATTATT+TGG | - | chr1_2:69391846-69391865 | Msa0088290:intron | 20.0% |
| !! | GTAAATTCCTACTATTATTT+GGG | - | chr1_2:69391847-69391866 | Msa0088290:intron | 20.0% |
| !!! | TTTTTATTTCCATAATCAGA+CGG | + | chr1_2:69392191-69392210 | None:intergenic | 20.0% |
| !! | ATACTATAAAGATGTTTCAT+TGG | + | chr1_2:69392486-69392505 | None:intergenic | 20.0% |
| !! | AAATAACCAAACTTGTAAAT+AGG | + | chr1_2:69392958-69392977 | None:intergenic | 20.0% |
| !! | AAGTAGTAAATAAATTTACC+TGG | + | chr1_2:69393330-69393349 | None:intergenic | 20.0% |
| !!! | GTTTTATAATTGCAAATGTT+GGG | + | chr1_2:69393558-69393577 | None:intergenic | 20.0% |
| !! | TATAGATAAATCAACTTCTT+AGG | - | chr1_2:69393870-69393889 | Msa0088290:intron | 20.0% |
| !! | TAATTAAGCAAACATATGTT+GGG | - | chr1_2:69393927-69393946 | Msa0088290:CDS | 20.0% |
| !! | TATCTGTGTTTGAATAAATT+AGG | - | chr1_2:69394037-69394056 | Msa0088290:five_prime_UTR | 20.0% |
| ! | AGATATCTTAAACTTGACAT+TGG | + | chr1_2:69390143-69390162 | None:intergenic | 25.0% |
| !! | TTTAAGATATCTCTTCAGTA+AGG | - | chr1_2:69390151-69390170 | Msa0088290:three_prime_UTR | 25.0% |
| ! | TTAAGATATCTCTTCAGTAA+GGG | - | chr1_2:69390152-69390171 | Msa0088290:three_prime_UTR | 25.0% |
| ! | GAAATAAGTTGTACAGATTA+TGG | + | chr1_2:69390380-69390399 | None:intergenic | 25.0% |
| !!! | ACAAAAGTGCATGTTTTTAA+CGG | + | chr1_2:69390638-69390657 | None:intergenic | 25.0% |
| !!! | ATGCACTTTTGTAATTTGTA+CGG | - | chr1_2:69390646-69390665 | Msa0088290:intron | 25.0% |
| !! | AGAAAATTAGCACTGAAATT+TGG | + | chr1_2:69391340-69391359 | None:intergenic | 25.0% |
| !!! | TTTTAGGTTCAAATCTTATG+AGG | + | chr1_2:69391646-69391665 | None:intergenic | 25.0% |
| ! | CCAAAACAATTTGAAGATAA+TGG | + | chr1_2:69391808-69391827 | None:intergenic | 25.0% |
| !! | CCATTATCTTCAAATTGTTT+TGG | - | chr1_2:69391805-69391824 | Msa0088290:intron | 25.0% |
| ! | AATATGACCCAAATAATAGT+AGG | + | chr1_2:69391857-69391876 | None:intergenic | 25.0% |
| ! | TAATAGCATTTCAAGACTAT+TGG | - | chr1_2:69391902-69391921 | Msa0088290:CDS | 25.0% |
| !!! | TTTTATTTCCATAATCAGAC+GGG | + | chr1_2:69392190-69392209 | None:intergenic | 25.0% |
| !!! | TCTGGTAAATTTTTCTAGAA+GGG | + | chr1_2:69392357-69392376 | None:intergenic | 25.0% |
| !! | TTCTGGTAAATTTTTCTAGA+AGG | + | chr1_2:69392358-69392377 | None:intergenic | 25.0% |
| !! | CTCAACAAAAGTATAAAATC+CGG | - | chr1_2:69392405-69392424 | Msa0088290:intron | 25.0% |
| !! | TCAACAAAAGTATAAAATCC+GGG | - | chr1_2:69392406-69392425 | Msa0088290:intron | 25.0% |
| !!! | TTCTTTTTTTAGTCTTACTG+AGG | - | chr1_2:69392676-69392695 | Msa0088290:CDS | 25.0% |
| ! | GTAATTACAGCATATTAATG+TGG | + | chr1_2:69392872-69392891 | None:intergenic | 25.0% |
| ! | CAAGTTAACAAAACCAATAA+AGG | + | chr1_2:69393077-69393096 | None:intergenic | 25.0% |
| !!! | CTTTATTGGTTTTGTTAACT+TGG | - | chr1_2:69393075-69393094 | Msa0088290:CDS | 25.0% |
| ! | TTAAGGTGGTAAATTTATAC+TGG | - | chr1_2:69393221-69393240 | Msa0088290:CDS | 25.0% |
| !! | ACTACTTTCACATTTTGAAT+TGG | - | chr1_2:69393343-69393362 | Msa0088290:intron | 25.0% |
| !! | CTACTTTCACATTTTGAATT+GGG | - | chr1_2:69393344-69393363 | Msa0088290:intron | 25.0% |
| !!! | GGTTTTATAATTGCAAATGT+TGG | + | chr1_2:69393559-69393578 | None:intergenic | 25.0% |
| !! | GATTAAAACATAAGGCATTT+CGG | + | chr1_2:69393580-69393599 | None:intergenic | 25.0% |
| !!! | AAATGCCTTATGTTTTAATC+AGG | - | chr1_2:69393580-69393599 | Msa0088290:intron | 25.0% |
| !! | CTTTTCCTGATTAAAACATA+AGG | + | chr1_2:69393588-69393607 | None:intergenic | 25.0% |
| !!! | CTTATGTTTTAATCAGGAAA+AGG | - | chr1_2:69393586-69393605 | Msa0088290:intron | 25.0% |
| !! | TTTTAATCAGGAAAAGGTTA+TGG | - | chr1_2:69393592-69393611 | Msa0088290:intron | 25.0% |
| !! | CATGTACATATGTTACTTAT+TGG | + | chr1_2:69393641-69393660 | None:intergenic | 25.0% |
| ! | CAATAAGTAACATATGTACA+TGG | - | chr1_2:69393639-69393658 | Msa0088290:intron | 25.0% |
| ! | ACATATGTTTGCTTAATTAG+AGG | + | chr1_2:69393926-69393945 | None:intergenic | 25.0% |
| ! | CTAATTAAGCAAACATATGT+TGG | - | chr1_2:69393926-69393945 | Msa0088290:CDS | 25.0% |
| ! | TTAGGATAAAACAGAATTTG+TGG | - | chr1_2:69394055-69394074 | Msa0088290:five_prime_UTR | 25.0% |
| !! | TTGAAAGTATCTAAAGAACC+TGG | + | chr1_2:69390233-69390252 | None:intergenic | 30.0% |
| !! | GGGTTTACAAAGTATTTTGT+TGG | + | chr1_2:69390278-69390297 | None:intergenic | 30.0% |
| ACTCAAATTAACCAGAGAAA+GGG | + | chr1_2:69390298-69390317 | None:intergenic | 30.0% | |
| AACTCAAATTAACCAGAGAA+AGG | + | chr1_2:69390299-69390318 | None:intergenic | 30.0% | |
| TCTGCTTGAATAAACAAACT+TGG | + | chr1_2:69390541-69390560 | None:intergenic | 30.0% | |
| ! | AATTTGTACGGACTAAAAAG+AGG | - | chr1_2:69390658-69390677 | Msa0088290:intron | 30.0% |
| TCAGATTTAAATATGAGCTG+AGG | + | chr1_2:69390888-69390907 | None:intergenic | 30.0% | |
| ATCATTACAACTCTTGTTAC+TGG | - | chr1_2:69391041-69391060 | Msa0088290:intron | 30.0% | |
| AACTCTTGTTACTGGTAATT+TGG | - | chr1_2:69391049-69391068 | Msa0088290:intron | 30.0% | |
| AGCTGCAAAATATTCAGATT+GGG | - | chr1_2:69391223-69391242 | Msa0088290:intron | 30.0% | |
| CAAAATATTCAGATTGGGTA+AGG | - | chr1_2:69391228-69391247 | Msa0088290:intron | 30.0% | |
| TTATATGGATGAGCATAGAA+GGG | + | chr1_2:69391298-69391317 | None:intergenic | 30.0% | |
| AGTTGCATCTAGTAATTTGA+AGG | + | chr1_2:69391385-69391404 | None:intergenic | 30.0% | |
| TTTGGTTAGTAACCATATGT+GGG | - | chr1_2:69391615-69391634 | Msa0088290:intron | 30.0% | |
| ! | ATCGTTTCCTGTTTCATTTT+AGG | - | chr1_2:69392139-69392158 | Msa0088290:intron | 30.0% |
| !!! | TCCTGTTTCATTTTAGGATT+CGG | - | chr1_2:69392145-69392164 | Msa0088290:intron | 30.0% |
| TTTATTTCCATAATCAGACG+GGG | + | chr1_2:69392189-69392208 | None:intergenic | 30.0% | |
| !! | TAGAAAATAAAAGCGCTAAC+AGG | - | chr1_2:69392505-69392524 | Msa0088290:intron | 30.0% |
| !!! | ATTTCATGTTTTGACCATGA+TGG | + | chr1_2:69392611-69392630 | None:intergenic | 30.0% |
| ATGGTCAAAACATGAAATCT+GGG | - | chr1_2:69392613-69392632 | Msa0088290:CDS | 30.0% | |
| AACTTTGCAAATTGTTCGTT+TGG | - | chr1_2:69392708-69392727 | Msa0088290:intron | 30.0% | |
| TTTAAATGTGTCGAAATCCT+CGG | + | chr1_2:69392803-69392822 | None:intergenic | 30.0% | |
| TACTGACCTATTTACAAGTT+TGG | - | chr1_2:69392949-69392968 | Msa0088290:CDS | 30.0% | |
| GATTTCAGACTATCCTTTAT+TGG | - | chr1_2:69393061-69393080 | Msa0088290:CDS | 30.0% | |
| ATGGACCAAAAAGGAATTTA+AGG | - | chr1_2:69393204-69393223 | Msa0088290:CDS | 30.0% | |
| ! | TACCACCTTAAATTCCTTTT+TGG | + | chr1_2:69393212-69393231 | None:intergenic | 30.0% |
| TTCTCAATTTGAGTAAATGC+AGG | - | chr1_2:69393276-69393295 | Msa0088290:CDS | 30.0% | |
| ATCTACTCATTGAGAAACTA+TGG | + | chr1_2:69393754-69393773 | None:intergenic | 30.0% | |
| ! | ATGATGGAAATGTAATCACT+TGG | - | chr1_2:69393772-69393791 | Msa0088290:intron | 30.0% |
| AAGTTGTTCAGACATGATAT+CGG | + | chr1_2:69393813-69393832 | None:intergenic | 30.0% | |
| AACAACTTAACGAATAAGTC+AGG | - | chr1_2:69393825-69393844 | Msa0088290:intron | 30.0% | |
| AGACACACAATCATAAATCT+AGG | + | chr1_2:69393998-69394017 | None:intergenic | 30.0% | |
| TACTTTGTAAACCCTTTCTC+TGG | - | chr1_2:69390284-69390303 | Msa0088290:three_prime_UTR | 35.0% | |
| !! | AAGTTATGAGTCGTTTTCGT+AGG | + | chr1_2:69390422-69390441 | None:intergenic | 35.0% |
| GAAACTGAAAAGTGGTTACA+GGG | + | chr1_2:69390614-69390633 | None:intergenic | 35.0% | |
| AGAAACTGAAAAGTGGTTAC+AGG | + | chr1_2:69390615-69390634 | None:intergenic | 35.0% | |
| TTAACGGAGAAACTGAAAAG+TGG | + | chr1_2:69390622-69390641 | None:intergenic | 35.0% | |
| AGGTTCAGAGACTAAACAAA+AGG | - | chr1_2:69390678-69390697 | Msa0088290:intron | 35.0% | |
| ! | TGCTTCATGCTTGATGTTTT+GGG | - | chr1_2:69390809-69390828 | Msa0088290:CDS | 35.0% |
| ! | GACACTTGTTAACGATTCAT+TGG | - | chr1_2:69390968-69390987 | Msa0088290:CDS | 35.0% |
| TGTTAACGATTCATTGGAGA+AGG | - | chr1_2:69390974-69390993 | Msa0088290:CDS | 35.0% | |
| TCTTGTTACTGGTAATTTGG+AGG | - | chr1_2:69391052-69391071 | Msa0088290:intron | 35.0% | |
| ACTTATGTTCCTCCTCAATT+TGG | - | chr1_2:69391146-69391165 | Msa0088290:intron | 35.0% | |
| TTCCTCCTCAATTTGGTATT+CGG | - | chr1_2:69391153-69391172 | Msa0088290:intron | 35.0% | |
| CAGCTGCAAAATATTCAGAT+TGG | - | chr1_2:69391222-69391241 | Msa0088290:intron | 35.0% | |
| CTTATATGGATGAGCATAGA+AGG | + | chr1_2:69391299-69391318 | None:intergenic | 35.0% | |
| GTCAAAGGCAGTAACTTATA+TGG | + | chr1_2:69391313-69391332 | None:intergenic | 35.0% | |
| CTGAAATTTGGTATCGTCAA+AGG | + | chr1_2:69391328-69391347 | None:intergenic | 35.0% | |
| ! | TTTTTCTGCAATGCAGGATT+AGG | - | chr1_2:69391405-69391424 | Msa0088290:intron | 35.0% |
| GAACTGTTGCTGTCTTATAA+TGG | - | chr1_2:69391464-69391483 | Msa0088290:intron | 35.0% | |
| AATGGTGATCAAATACTCGA+AGG | - | chr1_2:69391482-69391501 | Msa0088290:CDS | 35.0% | |
| !!! | TTTTTTCGTTGTTATCCGCA+AGG | - | chr1_2:69391517-69391536 | Msa0088290:CDS | 35.0% |
| GATAAAATAAGCTCACCTTG+CGG | + | chr1_2:69391535-69391554 | None:intergenic | 35.0% | |
| CTAAAATTCTCTGTGTCCTT+TGG | - | chr1_2:69391597-69391616 | Msa0088290:intron | 35.0% | |
| CACATATGGTTACTAACCAA+AGG | + | chr1_2:69391616-69391635 | None:intergenic | 35.0% | |
| CTTTGGTTAGTAACCATATG+TGG | - | chr1_2:69391614-69391633 | Msa0088290:intron | 35.0% | |
| TATGAGGTAATTCCCACATA+TGG | + | chr1_2:69391630-69391649 | None:intergenic | 35.0% | |
| ! | CATGATTAGCAACAGCTTTT+AGG | + | chr1_2:69391662-69391681 | None:intergenic | 35.0% |
| CTAAAAGCTGTTGCTAATCA+TGG | - | chr1_2:69391660-69391679 | Msa0088290:intron | 35.0% | |
| AAGTTAGCTGGAATAGTTGT+AGG | + | chr1_2:69391744-69391763 | None:intergenic | 35.0% | |
| TACAACTATTCCAGCTAACT+TGG | - | chr1_2:69391743-69391762 | Msa0088290:intron | 35.0% | |
| TGAAATAAGCTTATGCGTCA+TGG | - | chr1_2:69392064-69392083 | Msa0088290:intron | 35.0% | |
| ACCGAATCCTAAAATGAAAC+AGG | + | chr1_2:69392149-69392168 | None:intergenic | 35.0% | |
| AACCATACTCAAGTACTAGT+TGG | + | chr1_2:69392271-69392290 | None:intergenic | 35.0% | |
| ACTAGTACTTGAGTATGGTT+TGG | - | chr1_2:69392271-69392290 | Msa0088290:intron | 35.0% | |
| TTATCTCATTTGATGGAGAG+TGG | - | chr1_2:69392431-69392450 | Msa0088290:intron | 35.0% | |
| !! | AGGTTATTTCTCATGTGACT+TGG | - | chr1_2:69392525-69392544 | Msa0088290:intron | 35.0% |
| CATGGTCAAAACATGAAATC+TGG | - | chr1_2:69392612-69392631 | Msa0088290:CDS | 35.0% | |
| TACTGCTAGATCGAAATCAA+TGG | - | chr1_2:69392777-69392796 | Msa0088290:intron | 35.0% | |
| TACAAAATAGTATTCTCGCG+AGG | + | chr1_2:69392899-69392918 | None:intergenic | 35.0% | |
| CAATGACATTGTATGTCAGT+TGG | - | chr1_2:69392980-69392999 | Msa0088290:CDS | 35.0% | |
| ! | GATAGTCTGAAATCTAGTGT+AGG | + | chr1_2:69393055-69393074 | None:intergenic | 35.0% |
| !!! | ATCCTTCCAGGTTTTAGAAT+GGG | + | chr1_2:69393179-69393198 | None:intergenic | 35.0% |
| !!! | TATCCTTCCAGGTTTTAGAA+TGG | + | chr1_2:69393180-69393199 | None:intergenic | 35.0% |
| AAACCTGGAAGGATATATCA+TGG | - | chr1_2:69393185-69393204 | Msa0088290:CDS | 35.0% | |
| GGATATATCATGGACCAAAA+AGG | - | chr1_2:69393195-69393214 | Msa0088290:CDS | 35.0% | |
| GACCAAAAAGGAATTTAAGG+TGG | - | chr1_2:69393207-69393226 | Msa0088290:CDS | 35.0% | |
| CAATTTGAGTAAATGCAGGA+TGG | - | chr1_2:69393280-69393299 | Msa0088290:CDS | 35.0% | |
| ATTAAAGTTGTGATCATCCC+TGG | + | chr1_2:69393307-69393326 | None:intergenic | 35.0% | |
| GATGATCACAACTTTAATCC+AGG | - | chr1_2:69393309-69393328 | Msa0088290:CDS | 35.0% | |
| ! | TCACATTTTGAATTGGGACT+TGG | - | chr1_2:69393350-69393369 | Msa0088290:intron | 35.0% |
| ! | CACATTTTGAATTGGGACTT+GGG | - | chr1_2:69393351-69393370 | Msa0088290:intron | 35.0% |
| GTAAATGGACAGATGCATAA+TGG | + | chr1_2:69393409-69393428 | None:intergenic | 35.0% | |
| TATGCATCTGTCCATTTACA+CGG | - | chr1_2:69393410-69393429 | Msa0088290:intron | 35.0% | |
| GTTTCTCAATGAGTAGATGA+TGG | - | chr1_2:69393756-69393775 | Msa0088290:intron | 35.0% | |
| ATGGACATGTGACATGTCAT+AGG | + | chr1_2:69390361-69390380 | None:intergenic | 40.0% | |
| AGGCTATCTTAGAGAGCTTA+CGG | + | chr1_2:69390402-69390421 | None:intergenic | 40.0% | |
| ! | CAAAAGGTGTAAACTCTACG+AGG | - | chr1_2:69390694-69390713 | Msa0088290:intron | 40.0% |
| ! | GTGCTTCATGCTTGATGTTT+TGG | - | chr1_2:69390808-69390827 | Msa0088290:CDS | 40.0% |
| !!! | CATGCTTGATGTTTTGGGAA+AGG | - | chr1_2:69390814-69390833 | Msa0088290:CDS | 40.0% |
| AGTTTCCAAGCTGGCAAATT+TGG | + | chr1_2:69390939-69390958 | None:intergenic | 40.0% | |
| !!! | ACCCTCTTTTTCAGTGCAAA+GGG | + | chr1_2:69391005-69391024 | None:intergenic | 40.0% |
| !!! | AACCCTCTTTTTCAGTGCAA+AGG | + | chr1_2:69391006-69391025 | None:intergenic | 40.0% |
| ! | GAAAAAGAGGGTTGATTCTG+AGG | - | chr1_2:69391013-69391032 | Msa0088290:intron | 40.0% |
| TGCATGTGAGACTATATCTG+AGG | - | chr1_2:69391082-69391101 | Msa0088290:intron | 40.0% | |
| TCCTCCTCAATTTGGTATTC+GGG | - | chr1_2:69391154-69391173 | Msa0088290:intron | 40.0% | |
| TTTCCCCGAATACCAAATTG+AGG | + | chr1_2:69391161-69391180 | None:intergenic | 40.0% | |
| CAATTTGGTATTCGGGGAAA+TGG | - | chr1_2:69391161-69391180 | Msa0088290:intron | 40.0% | |
| AATGGTGAACATTTGGCTGT+TGG | - | chr1_2:69391179-69391198 | Msa0088290:intron | 40.0% | |
| !!! | GCAACTTTTTTCTGCAATGC+AGG | - | chr1_2:69391399-69391418 | Msa0088290:intron | 40.0% |
| ATGCAGGATTAGGAAGACAA+TGG | - | chr1_2:69391415-69391434 | Msa0088290:intron | 40.0% | |
| AAGCTGTTGCTAATCATGGT+TGG | - | chr1_2:69391664-69391683 | Msa0088290:intron | 40.0% | |
| AGCTGTTGCTAATCATGGTT+GGG | - | chr1_2:69391665-69391684 | Msa0088290:intron | 40.0% | |
| AACTATTCCAGCTAACTTGG+TGG | - | chr1_2:69391746-69391765 | Msa0088290:intron | 40.0% | |
| TTAACTTCCACCAAGTTAGC+TGG | + | chr1_2:69391756-69391775 | None:intergenic | 40.0% | |
| TACATTCTCAAGAGTTCACG+AGG | - | chr1_2:69391983-69392002 | Msa0088290:intron | 40.0% | |
| ACTAGTTGGCGTATTATTCC+TGG | + | chr1_2:69392257-69392276 | None:intergenic | 40.0% | |
| CCATCAAATGAGATAAAGCC+CGG | + | chr1_2:69392427-69392446 | None:intergenic | 40.0% | |
| GTCAAAACATGAAATCTGGG+AGG | - | chr1_2:69392616-69392635 | Msa0088290:CDS | 40.0% | |
| TGCATTCACTCACTACTATG+TGG | - | chr1_2:69392825-69392844 | Msa0088290:intron | 40.0% | |
| ATTCACTCACTACTATGTGG+TGG | - | chr1_2:69392828-69392847 | Msa0088290:intron | 40.0% | |
| ATGTCATTGCAGATAGCTTG+AGG | - | chr1_2:69393104-69393123 | Msa0088290:CDS | 40.0% | |
| GCAACATGCAGATAGTATTC+AGG | - | chr1_2:69393132-69393151 | Msa0088290:CDS | 40.0% | |
| ! | GTATTCAGGTTCCAACAGAA+TGG | - | chr1_2:69393146-69393165 | Msa0088290:CDS | 40.0% |
| !! | AATCAGCCCATTCTAAAACC+TGG | - | chr1_2:69393170-69393189 | Msa0088290:CDS | 40.0% |
| ! | TTTTGAATTGGGACTTGGGA+TGG | - | chr1_2:69393355-69393374 | Msa0088290:intron | 40.0% |
| AAGACCACAAACCGTGTAAA+TGG | + | chr1_2:69393424-69393443 | None:intergenic | 40.0% | |
| GGTTATGGAGAAAGCAACTT+TGG | - | chr1_2:69393607-69393626 | Msa0088290:intron | 40.0% | |
| ATGGAGAAAGCAACTTTGGA+AGG | - | chr1_2:69393611-69393630 | Msa0088290:intron | 40.0% | |
| TGAAGATCCTAAACCTTTGC+TGG | - | chr1_2:69393662-69393681 | Msa0088290:intron | 40.0% | |
| GAAGATCCTAAACCTTTGCT+GGG | - | chr1_2:69393663-69393682 | Msa0088290:intron | 40.0% | |
| TTTCATCCCAGCAAAGGTTT+AGG | + | chr1_2:69393672-69393691 | None:intergenic | 40.0% | |
| AAACCTTTGCTGGGATGAAA+TGG | - | chr1_2:69393672-69393691 | Msa0088290:intron | 40.0% | |
| AATGTATACGCCAACTGAAG+CGG | + | chr1_2:69393724-69393743 | None:intergenic | 40.0% | |
| CAGACATGATATCGGTAAAC+TGG | + | chr1_2:69393805-69393824 | None:intergenic | 40.0% | |
| ! | ATGTTGCTAACATGGCCTTT+TGG | + | chr1_2:69393902-69393921 | None:intergenic | 40.0% |
| ! | TTAGAGGCATGTTGCTAACA+TGG | + | chr1_2:69393910-69393929 | None:intergenic | 40.0% |
| GGCACAAAAAACATTGATGC+TGG | - | chr1_2:69393948-69393967 | Msa0088290:CDS | 40.0% | |
| CAGTTACAGACCAATCAGAT+CGG | + | chr1_2:69393975-69393994 | None:intergenic | 40.0% | |
| GTCTGTAACTGTGCTATAAC+TGG | - | chr1_2:69394014-69394033 | Msa0088290:five_prime_UTR | 40.0% | |
| ! | GAACATCTGAGGTGTGTGAA+AGG | + | chr1_2:69390181-69390200 | None:intergenic | 45.0% |
| ! | TCAAGAAAGACTTTTGCCGC+AGG | + | chr1_2:69390203-69390222 | None:intergenic | 45.0% |
| GTCTTTCTTGAAGCTCATCC+AGG | - | chr1_2:69390212-69390231 | Msa0088290:three_prime_UTR | 45.0% | |
| ! | GCTGGCAAATTTGGTGACAA+TGG | + | chr1_2:69390930-69390949 | None:intergenic | 45.0% |
| TGTCACCAAATTTGCCAGCT+TGG | - | chr1_2:69390931-69390950 | Msa0088290:CDS | 45.0% | |
| TGCAATGCAAGTTTCCAAGC+TGG | + | chr1_2:69390948-69390967 | None:intergenic | 45.0% | |
| TGCCCTTTGCACTGAAAAAG+AGG | - | chr1_2:69391000-69391019 | Msa0088290:intron | 45.0% | |
| GCCCTTTGCACTGAAAAAGA+GGG | - | chr1_2:69391001-69391020 | Msa0088290:intron | 45.0% | |
| CCTCCTCAATTTGGTATTCG+GGG | - | chr1_2:69391155-69391174 | Msa0088290:intron | 45.0% | |
| TCGGGGAAATGGTGAACATT+TGG | - | chr1_2:69391172-69391191 | Msa0088290:intron | 45.0% | |
| AACAGTTCTGTCACTGATGG+AGG | + | chr1_2:69391452-69391471 | None:intergenic | 45.0% | |
| AGCAACAGTTCTGTCACTGA+TGG | + | chr1_2:69391455-69391474 | None:intergenic | 45.0% | |
| ! | CAAGAGTTCACGAGGTATCT+TGG | - | chr1_2:69391991-69392010 | Msa0088290:intron | 45.0% |
| ! | TAGGATTCGGTTTCCGATGA+TGG | - | chr1_2:69392158-69392177 | Msa0088290:intron | 45.0% |
| ! | AGGATTCGGTTTCCGATGAT+GGG | - | chr1_2:69392159-69392178 | Msa0088290:intron | 45.0% |
| GGAAGAACACCATCACTGAT+AGG | + | chr1_2:69392236-69392255 | None:intergenic | 45.0% | |
| ! | ATCAGTGATGGTGTTCTTCC+AGG | - | chr1_2:69392236-69392255 | Msa0088290:intron | 45.0% |
| CGCCAACTAGTACTTGAGTA+TGG | - | chr1_2:69392266-69392285 | Msa0088290:intron | 45.0% | |
| ! | CCGGGCTTTATCTCATTTGA+TGG | - | chr1_2:69392424-69392443 | Msa0088290:intron | 45.0% |
| ! | GCATGATTTGCACTTGTGCA+GGG | - | chr1_2:69392547-69392566 | Msa0088290:intron | 45.0% |
| ATGGAGCAACTTCTCGACAT+GGG | + | chr1_2:69392592-69392611 | None:intergenic | 45.0% | |
| TAGATCGAAATCAATGGCCG+AGG | - | chr1_2:69392783-69392802 | Msa0088290:intron | 45.0% | |
| !! | AGCCCATTCTAAAACCTGGA+AGG | - | chr1_2:69393174-69393193 | Msa0088290:CDS | 45.0% |
| GGTCCATGATATATCCTTCC+AGG | + | chr1_2:69393191-69393210 | None:intergenic | 45.0% | |
| AGTAAATGCAGGATGGACCA+GGG | - | chr1_2:69393287-69393306 | Msa0088290:CDS | 45.0% | |
| CTGTCCATTTACACGGTTTG+TGG | - | chr1_2:69393417-69393436 | Msa0088290:intron | 45.0% | |
| TGTCCATTTCATCCCAGCAA+AGG | + | chr1_2:69393678-69393697 | None:intergenic | 45.0% | |
| ATGTATACGCCAACTGAAGC+GGG | + | chr1_2:69393723-69393742 | None:intergenic | 45.0% | |
| ! | TTGCTAACATGGCCTTTTGG+AGG | + | chr1_2:69393899-69393918 | None:intergenic | 45.0% |
| ACACACCTCAGATGTTCCTG+CGG | - | chr1_2:69390184-69390203 | Msa0088290:three_prime_UTR | 50.0% | |
| ! | TTTTGCCGCAGGAACATCTG+AGG | + | chr1_2:69390192-69390211 | None:intergenic | 50.0% |
| CCCCGAATACCAAATTGAGG+AGG | + | chr1_2:69391158-69391177 | None:intergenic | 50.0% | |
| GGTGAACATTTGGCTGTTGG+CGG | - | chr1_2:69391182-69391201 | Msa0088290:intron | 50.0% | |
| ATTTGGCTGTTGGCGGCTAT+GGG | - | chr1_2:69391189-69391208 | Msa0088290:intron | 50.0% | |
| CAGACAGCTCCTATCAGTGA+TGG | - | chr1_2:69392224-69392243 | Msa0088290:intron | 50.0% | |
| AGAAGGGACTCGTTCTTCTG+TGG | + | chr1_2:69392341-69392360 | None:intergenic | 50.0% | |
| ! | GGCATGATTTGCACTTGTGC+AGG | - | chr1_2:69392546-69392565 | Msa0088290:intron | 50.0% |
| GATGGAGCAACTTCTCGACA+TGG | + | chr1_2:69392593-69392612 | None:intergenic | 50.0% | |
| GTCGAGAAGTTGCTCCATCA+TGG | - | chr1_2:69392594-69392613 | Msa0088290:intron | 50.0% | |
| TGGGCTGATTGCCATTCTGT+TGG | + | chr1_2:69393160-69393179 | None:intergenic | 50.0% | |
| GAGTAAATGCAGGATGGACC+AGG | - | chr1_2:69393286-69393305 | Msa0088290:CDS | 50.0% | |
| TGTATACGCCAACTGAAGCG+GGG | + | chr1_2:69393722-69393741 | None:intergenic | 50.0% | |
| CTTCTTAGGCCACCTCCAAA+AGG | - | chr1_2:69393884-69393903 | Msa0088290:intron | 50.0% | |
| !! | CTAACATGGCCTTTTGGAGG+TGG | + | chr1_2:69393896-69393915 | None:intergenic | 50.0% |
| TGATGCTGGTCCGATCTGAT+TGG | - | chr1_2:69393962-69393981 | Msa0088290:CDS | 50.0% | |
| CATTTGGCTGTTGGCGGCTA+TGG | - | chr1_2:69391188-69391207 | Msa0088290:intron | 55.0% | |
| AGACGGGGCTTTCCCATCAT+CGG | + | chr1_2:69392174-69392193 | None:intergenic | 55.0% | |
| GGGAAAGCCCCGTCTGATTA+TGG | - | chr1_2:69392179-69392198 | Msa0088290:intron | 55.0% | |
| TGCACTTGTGCAGGGTATGC+AGG | - | chr1_2:69392555-69392574 | Msa0088290:intron | 55.0% | |
| TGCAGGGTATGCAGGAGTGA+AGG | - | chr1_2:69392563-69392582 | Msa0088290:intron | 55.0% | |
| TGAAGCGGGGGAGAAAGAGA+AGG | + | chr1_2:69393709-69393728 | None:intergenic | 55.0% | |
| TCTTTCTCCCCCGCTTCAGT+TGG | - | chr1_2:69393711-69393730 | Msa0088290:intron | 55.0% | |
| GTATACGCCAACTGAAGCGG+GGG | + | chr1_2:69393721-69393740 | None:intergenic | 55.0% | |
| TGGCTGTTGGCGGCTATGGG+AGG | - | chr1_2:69391192-69391211 | Msa0088290:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_2 | gene | 69390046 | 69394088 | 69390046 | ID=Msa0088290;Name=Msa0088290 |
| chr1_2 | mRNA | 69390046 | 69394088 | 69390046 | ID=Msa0088290-mRNA-1;Parent=Msa0088290;Name=Msa0088290-mRNA-1;_AED=0.18;_eAED=0.18;_QI=97|1|1|1|1|1|8|424|364 |
| chr1_2 | exon | 69390046 | 69390532 | 69390046 | ID=Msa0088290-mRNA-1:exon:23848;Parent=Msa0088290-mRNA-1 |
| chr1_2 | exon | 69390804 | 69390836 | 69390804 | ID=Msa0088290-mRNA-1:exon:23847;Parent=Msa0088290-mRNA-1 |
| chr1_2 | exon | 69390909 | 69391018 | 69390909 | ID=Msa0088290-mRNA-1:exon:23846;Parent=Msa0088290-mRNA-1 |
| chr1_2 | exon | 69391481 | 69391566 | 69391481 | ID=Msa0088290-mRNA-1:exon:23845;Parent=Msa0088290-mRNA-1 |
| chr1_2 | exon | 69391852 | 69391973 | 69391852 | ID=Msa0088290-mRNA-1:exon:23844;Parent=Msa0088290-mRNA-1 |
| chr1_2 | exon | 69392596 | 69392713 | 69392596 | ID=Msa0088290-mRNA-1:exon:23843;Parent=Msa0088290-mRNA-1 |
| chr1_2 | exon | 69392885 | 69393356 | 69392885 | ID=Msa0088290-mRNA-1:exon:23842;Parent=Msa0088290-mRNA-1 |
| chr1_2 | exon | 69393901 | 69394088 | 69393901 | ID=Msa0088290-mRNA-1:exon:23841;Parent=Msa0088290-mRNA-1 |
| chr1_2 | five_prime_UTR | 69393992 | 69394088 | 69393992 | ID=Msa0088290-mRNA-1:five_prime_utr;Parent=Msa0088290-mRNA-1 |
| chr1_2 | CDS | 69393901 | 69393991 | 69393901 | ID=Msa0088290-mRNA-1:cds;Parent=Msa0088290-mRNA-1 |
| chr1_2 | CDS | 69392885 | 69393356 | 69392885 | ID=Msa0088290-mRNA-1:cds;Parent=Msa0088290-mRNA-1 |
| chr1_2 | CDS | 69392596 | 69392713 | 69392596 | ID=Msa0088290-mRNA-1:cds;Parent=Msa0088290-mRNA-1 |
| chr1_2 | CDS | 69391852 | 69391973 | 69391852 | ID=Msa0088290-mRNA-1:cds;Parent=Msa0088290-mRNA-1 |
| chr1_2 | CDS | 69391481 | 69391566 | 69391481 | ID=Msa0088290-mRNA-1:cds;Parent=Msa0088290-mRNA-1 |
| chr1_2 | CDS | 69390909 | 69391018 | 69390909 | ID=Msa0088290-mRNA-1:cds;Parent=Msa0088290-mRNA-1 |
| chr1_2 | CDS | 69390804 | 69390836 | 69390804 | ID=Msa0088290-mRNA-1:cds;Parent=Msa0088290-mRNA-1 |
| chr1_2 | CDS | 69390470 | 69390532 | 69390470 | ID=Msa0088290-mRNA-1:cds;Parent=Msa0088290-mRNA-1 |
| chr1_2 | three_prime_UTR | 69390046 | 69390469 | 69390046 | ID=Msa0088290-mRNA-1:three_prime_utr;Parent=Msa0088290-mRNA-1 |
| Gene Sequence |
| Protein sequence |
