AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0079840


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0079840 MtrunA17_Chr1g0191511 86.145 332 3 1 1 332 1 289 0.0 557
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0079840 AT1G54780.1 60.767 339 72 4 1 332 1 285 1.52e-128 369

Find 88 sgRNAs with CRISPR-Local

Find 161 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATAATCCAACAAACATATT+TGG 0.145319 1_2:+57875176 None:intergenic
GAAATTAAAGAGTGATAATT+TGG 0.178944 1_2:+57875297 None:intergenic
AGAGAGAGTTGGGAGGAAAA+AGG 0.232772 1_2:+57877587 None:intergenic
GAAACGTTTGTTATCTGATT+TGG 0.264813 1_2:-57877239 Msa0079840:CDS
GCATTACCACTAAGTAAAAC+TGG 0.283086 1_2:+57877361 None:intergenic
TGAGTTTGCGGACCAAATTT+TGG 0.287868 1_2:-57876563 Msa0079840:CDS
CTCATGTTCTGTCTTTGATT+TGG 0.290236 1_2:+57877689 None:intergenic
CTTGCTCACTCATGCTCAAC+AGG 0.301494 1_2:-57877425 Msa0079840:CDS
TATCAATTGTCAATACATAA+AGG 0.302146 1_2:-57875116 Msa0079840:three_prime_UTR
GATACCAACGCTCCAAAATT+TGG 0.302536 1_2:+57876551 None:intergenic
GAAATGAGAGAGGTTGATTT+GGG 0.321070 1_2:+57877526 None:intergenic
GGAAATGAGAGAGGTTGATT+TGG 0.327476 1_2:+57877525 None:intergenic
ATTAGAAACAATGGGTTTGT+AGG 0.342048 1_2:+57877504 None:intergenic
TCTTGTAGTTGGAGGTTTGT+TGG 0.348630 1_2:-57875409 Msa0079840:CDS
ATCAATTGTCAATACATAAA+GGG 0.365525 1_2:-57875115 Msa0079840:three_prime_UTR
ATAATCCAACAAACATATTT+GGG 0.369748 1_2:+57875177 None:intergenic
TAATTCCCAAATATGTTTGT+TGG 0.374420 1_2:-57875182 Msa0079840:three_prime_UTR
TCAACCACATAGGCCTCTTT+AGG 0.375166 1_2:+57877301 None:intergenic
ACTGTTTCAGAGAACCTTCC+AGG 0.376813 1_2:-57876409 Msa0079840:intron
AGAAGTGGAGAGAGAGAGTT+GGG 0.377846 1_2:+57877577 None:intergenic
CAGAAAGAAGGAGCAGTTAC+TGG 0.391425 1_2:-57876478 Msa0079840:CDS
GGAGAGAAGGTGAAGATTTG+AGG 0.395997 1_2:+57877551 None:intergenic
TGAGAGAGGTTGATTTGGGT+TGG 0.410728 1_2:+57877530 None:intergenic
CAATTCTCTCTTGTAGTTGG+AGG 0.420228 1_2:-57875417 Msa0079840:CDS
GTGCATGAAGGAAGGGTTGG+TGG 0.423912 1_2:+57877451 None:intergenic
TATTGCATTTGTTGTTCCTA+TGG 0.427254 1_2:-57875385 Msa0079840:CDS
CGACTAGTTGCTGCCATTGA+CGG 0.431818 1_2:-57875528 Msa0079840:CDS
GTTGATTTGGGTTGGAGAGA+AGG 0.438011 1_2:+57877538 None:intergenic
CATGTCCATCATTATCGTTA+TGG 0.447241 1_2:+57875906 None:intergenic
ACCGAGGGACCACCAGGATC+TGG 0.448423 1_2:+57875501 None:intergenic
GGACAATTCTCTCTTGTAGT+TGG 0.450595 1_2:-57875420 Msa0079840:CDS
GAGAAGTGGAGAGAGAGAGT+TGG 0.457937 1_2:+57877576 None:intergenic
TGAGGAAGATGAGGGAGGGT+TGG 0.476347 1_2:+57877617 None:intergenic
TCATCATGATCATTGATCAT+TGG 0.480288 1_2:+57875929 None:intergenic
ACGTTTGTCGTCTTTAACCG+AGG 0.492907 1_2:+57875485 None:intergenic
GCCTATGTGGTTGATGATGC+TGG 0.497501 1_2:-57877292 Msa0079840:CDS
TTTACTTAGTGGTAATGCAT+TGG 0.498407 1_2:-57877356 Msa0079840:CDS
TAATGAGCGTCCACCTAAAG+AGG 0.498637 1_2:-57877314 Msa0079840:CDS
TCCAGATCCTGGTGGTCCCT+CGG 0.499224 1_2:-57875502 Msa0079840:CDS
TTGGTATCCTTCTGTGGAAG+AGG 0.505336 1_2:-57876536 Msa0079840:CDS
TTTGTATGCAGTATTGGCTA+CGG 0.505886 1_2:-57875589 Msa0079840:intron
GATGACCATAACGATAATGA+TGG 0.508252 1_2:-57875911 Msa0079840:CDS
GATGAGGGAGGGTTGGAATG+AGG 0.511085 1_2:+57877624 None:intergenic
GAAGATTTGAGGTTGAGAAG+TGG 0.512998 1_2:+57877562 None:intergenic
TTGTTTAAACTGAAGTATGT+AGG 0.517023 1_2:+57875788 None:intergenic
TGTTATCTGATTTGGAATCA+AGG 0.519003 1_2:-57877231 Msa0079840:CDS
GGGTTGTCATGAGGAAGATG+AGG 0.520868 1_2:+57877608 None:intergenic
ACTCAATTATAACATGAGCT+TGG 0.526873 1_2:+57875251 None:intergenic
TCTTTAACCGAGGGACCACC+AGG 0.532906 1_2:+57875495 None:intergenic
ATTGACGGACTTCCAGATCC+TGG 0.535082 1_2:-57875513 Msa0079840:CDS
AGGATCTGGAAGTCCGTCAA+TGG 0.539431 1_2:+57875515 None:intergenic
TAAGCATAGTATTGTACCAT+AGG 0.544493 1_2:+57875369 None:intergenic
TCATTACCCTCTTCCACAGA+AGG 0.547276 1_2:+57876529 None:intergenic
GGTTGTCATGAGGAAGATGA+GGG 0.547700 1_2:+57877609 None:intergenic
CATTACCACTAAGTAAAACT+GGG 0.556805 1_2:+57877362 None:intergenic
CCTACGGCTTGAACAAAAGC+AGG 0.557352 1_2:+57876451 None:intergenic
GCAAGGTTGTGCATGAAGGA+AGG 0.559545 1_2:+57877443 None:intergenic
TGTCATGAGGAAGATGAGGG+AGG 0.561679 1_2:+57877612 None:intergenic
CTTGTAACAAGTCAGAAAGA+AGG 0.568574 1_2:-57876490 Msa0079840:CDS
CTTCAGTTTAAACAAGGCAA+CGG 0.568788 1_2:-57875780 Msa0079840:CDS
GTCATGAGGAAGATGAGGGA+GGG 0.568806 1_2:+57877613 None:intergenic
GGGTAATGACAAGGGTGTTG+TGG 0.576837 1_2:-57876515 Msa0079840:CDS
TATTACACTTAGAAAACTCA+CGG 0.578085 1_2:-57877188 Msa0079840:intron
ACCACATAGGCCTCTTTAGG+TGG 0.587301 1_2:+57877304 None:intergenic
GTTGTGCATGAAGGAAGGGT+TGG 0.597066 1_2:+57877448 None:intergenic
CGTTTGTCGTCTTTAACCGA+GGG 0.605535 1_2:+57875486 None:intergenic
GGAGCGTTGGTATCCTTCTG+TGG 0.606556 1_2:-57876542 Msa0079840:CDS
GAAGAGACAGAAGAAAAGCG+TGG 0.608619 1_2:-57875441 Msa0079840:CDS
GGGTTTGTAGGAAATGAGAG+AGG 0.610811 1_2:+57877516 None:intergenic
TCCACCTAAAGAGGCCTATG+TGG 0.614674 1_2:-57877305 Msa0079840:CDS
GGGAGGGTTGGAATGAGGAA+AGG 0.615602 1_2:+57877629 None:intergenic
TGGTATCCTTCTGTGGAAGA+GGG 0.615864 1_2:-57876535 Msa0079840:CDS
AGTGGAGAGAGAGAGTTGGG+AGG 0.617964 1_2:+57877580 None:intergenic
AGAACAATGTTGTGCAACAG+AGG 0.624229 1_2:-57877668 Msa0079840:five_prime_UTR
GTGAGCAAGGTTGTGCATGA+AGG 0.627468 1_2:+57877439 None:intergenic
TGAGTCTAACTTCAAAACAA+AGG 0.628354 1_2:-57875463 Msa0079840:CDS
TACATACTTCAGTTTAAACA+AGG 0.635201 1_2:-57875786 Msa0079840:CDS
CAAGGTTGTGCATGAAGGAA+GGG 0.640898 1_2:+57877444 None:intergenic
TGTGGAAGAGGGTAATGACA+AGG 0.647686 1_2:-57876524 Msa0079840:CDS
CTGTTGAGCATGAGTGAGCA+AGG 0.649149 1_2:+57877426 None:intergenic
GCCATTAGGAAGTACCTGGA+AGG 0.650563 1_2:+57876395 None:intergenic
TTGCTCACTCATGCTCAACA+GGG 0.667046 1_2:-57877424 Msa0079840:CDS
AAAGAAGGAGCAGTTACTGG+TGG 0.670414 1_2:-57876475 Msa0079840:CDS
TTTAAACTGAAGTATGTAGG+CGG 0.672394 1_2:+57875791 None:intergenic
TCCAGCATCATCAACCACAT+AGG 0.674153 1_2:+57877291 None:intergenic
GTGGAAGAGGGTAATGACAA+GGG 0.686921 1_2:-57876523 Msa0079840:CDS
GACGGACTTCCAGATCCTGG+TGG 0.696278 1_2:-57875510 Msa0079840:CDS
TCTCTGAAACAGTAGCATCG+AGG 0.748886 1_2:+57876419 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAATAAAAATGTTGAATTTT+TGG - chr1_2:57876069-57876088 Msa0079840:intron 10.0%
!!! TATATTTGTTGTATTGTAAT+AGG - chr1_2:57875965-57875984 Msa0079840:intron 15.0%
!!! ATATCCATTATCTTATTTTT+TGG + chr1_2:57877358-57877377 None:intergenic 15.0%
!!! TTTTTGAGATTAGAAACAAT+GGG + chr1_2:57875203-57875222 None:intergenic 20.0%
!!! ATTTTCATATAAGCTATAAG+CGG + chr1_2:57875684-57875703 None:intergenic 20.0%
!! TTTCTTGAAAAATAAATGCA+AGG - chr1_2:57876618-57876637 Msa0079840:intron 20.0%
!! AACTCTTCTTAACAAAAAAA+GGG + chr1_2:57876697-57876716 None:intergenic 20.0%
!! GAAATTAAAGAGTGATAATT+TGG + chr1_2:57877402-57877421 None:intergenic 20.0%
!! ATAATCCAACAAACATATTT+GGG + chr1_2:57877522-57877541 None:intergenic 20.0%
!! AATAATCCAACAAACATATT+TGG + chr1_2:57877523-57877542 None:intergenic 20.0%
!! TATCAATTGTCAATACATAA+AGG - chr1_2:57877580-57877599 Msa0079840:CDS 20.0%
!! ATCAATTGTCAATACATAAA+GGG - chr1_2:57877581-57877600 Msa0079840:CDS 20.0%
!!! ATTCTAATCTAGACTATTTT+CGG + chr1_2:57877692-57877711 None:intergenic 20.0%
!!! CTTTTTGAGATTAGAAACAA+TGG + chr1_2:57875204-57875223 None:intergenic 25.0%
! TATTACACTTAGAAAACTCA+CGG - chr1_2:57875508-57875527 Msa0079840:CDS 25.0%
! CATAAGCAATATATGATAAG+CGG - chr1_2:57875746-57875765 Msa0079840:intron 25.0%
!!! TGAAGTTTTTTCCTTTATCT+AGG + chr1_2:57875814-57875833 None:intergenic 25.0%
! GTTGTATTGTAATAGGAAAA+CGG - chr1_2:57875972-57875991 Msa0079840:intron 25.0%
! TCATCAATAAACTGTTAGAA+TGG - chr1_2:57876042-57876061 Msa0079840:intron 25.0%
!!! ATGTTGAATTTTTGGATTTG+TGG - chr1_2:57876077-57876096 Msa0079840:intron 25.0%
!!! ATTGTTTTTCTGTAGCATAT+TGG - chr1_2:57876343-57876362 Msa0079840:intron 25.0%
!!! TTGTTTTTCTGTAGCATATT+GGG - chr1_2:57876344-57876363 Msa0079840:intron 25.0%
! TGATTATTTATGTCTGTGAA+AGG - chr1_2:57876410-57876429 Msa0079840:CDS 25.0%
!!! TTTTTTCTCACCAACAAATA+TGG - chr1_2:57876464-57876483 Msa0079840:CDS 25.0%
!! AAGCAACTTTGTTATGAATA+TGG - chr1_2:57876531-57876550 Msa0079840:CDS 25.0%
! CAACTCTTCTTAACAAAAAA+AGG + chr1_2:57876698-57876717 None:intergenic 25.0%
!!! TTTTTTGTTAAGAAGAGTTG+AGG - chr1_2:57876698-57876717 Msa0079840:intron 25.0%
! TTGTTTAAACTGAAGTATGT+AGG + chr1_2:57876911-57876930 None:intergenic 25.0%
! TACATACTTCAGTTTAAACA+AGG - chr1_2:57876910-57876929 Msa0079840:intron 25.0%
! GTAGCCAAAAAATAAGATAA+TGG - chr1_2:57877351-57877370 Msa0079840:CDS 25.0%
!!! CAAATAAGATCAGAGTTTTT+TGG - chr1_2:57877481-57877500 Msa0079840:CDS 25.0%
! TAATTCCCAAATATGTTTGT+TGG - chr1_2:57877514-57877533 Msa0079840:CDS 25.0%
! ATTAGAAACAATGGGTTTGT+AGG + chr1_2:57875195-57875214 None:intergenic 30.0%
CATTACCACTAAGTAAAACT+GGG + chr1_2:57875337-57875356 None:intergenic 30.0%
! TTTACTTAGTGGTAATGCAT+TGG - chr1_2:57875340-57875359 Msa0079840:exon 30.0%
!! GAAACGTTTGTTATCTGATT+TGG - chr1_2:57875457-57875476 Msa0079840:CDS 30.0%
!! TGTTATCTGATTTGGAATCA+AGG - chr1_2:57875465-57875484 Msa0079840:CDS 30.0%
ACAACTTAGTTAAGCTCATT+TGG + chr1_2:57875777-57875796 None:intergenic 30.0%
TTGAAACATAGCCTAGATAA+AGG - chr1_2:57875800-57875819 Msa0079840:CDS 30.0%
!! TGAATTTTTGGATTTGTGGT+TGG - chr1_2:57876081-57876100 Msa0079840:intron 30.0%
! TGTTTTTCTGTAGCATATTG+GGG - chr1_2:57876345-57876364 Msa0079840:intron 30.0%
CATATGTTCATAAACTGTGA+AGG - chr1_2:57876508-57876527 Msa0079840:CDS 30.0%
ATGCACTGAGTATATAGTAA+AGG - chr1_2:57876566-57876585 Msa0079840:CDS 30.0%
ACTGAGTATATAGTAAAGGA+CGG - chr1_2:57876570-57876589 Msa0079840:CDS 30.0%
TCATCATGATCATTGATCAT+TGG + chr1_2:57876770-57876789 None:intergenic 30.0%
ATACAGCTACTAAATGGATA+GGG + chr1_2:57876868-57876887 None:intergenic 30.0%
TATACAGCTACTAAATGGAT+AGG + chr1_2:57876869-57876888 None:intergenic 30.0%
CAACATATACAGCTACTAAA+TGG + chr1_2:57876874-57876893 None:intergenic 30.0%
TTTAAACTGAAGTATGTAGG+CGG + chr1_2:57876908-57876927 None:intergenic 30.0%
!! TAGCAGTTGTGATCATTTTT+AGG - chr1_2:57877054-57877073 Msa0079840:intron 30.0%
!! AGCAGTTGTGATCATTTTTA+GGG - chr1_2:57877055-57877074 Msa0079840:intron 30.0%
TGAGTCTAACTTCAAAACAA+AGG - chr1_2:57877233-57877252 Msa0079840:CDS 30.0%
!! TATTGCATTTGTTGTTCCTA+TGG - chr1_2:57877311-57877330 Msa0079840:CDS 30.0%
TAAGCATAGTATTGTACCAT+AGG + chr1_2:57877330-57877349 None:intergenic 30.0%
ACTCAATTATAACATGAGCT+TGG + chr1_2:57877448-57877467 None:intergenic 30.0%
CTCATGTTCTGTCTTTGATT+TGG + chr1_2:57875010-57875029 None:intergenic 35.0%
! GAAATGAGAGAGGTTGATTT+GGG + chr1_2:57875173-57875192 None:intergenic 35.0%
GCATTACCACTAAGTAAAAC+TGG + chr1_2:57875338-57875357 None:intergenic 35.0%
! CTTATTTGAGCTTGTTTACC+TGG - chr1_2:57875585-57875604 Msa0079840:intron 35.0%
TACCTGGATAAAAGAGCTTA+TGG - chr1_2:57875601-57875620 Msa0079840:intron 35.0%
! TTCCATAAGCTCTTTTATCC+AGG + chr1_2:57875606-57875625 None:intergenic 35.0%
GTTTATGACATGTCAATGAG+CGG - chr1_2:57875628-57875647 Msa0079840:intron 35.0%
CTTGTAACAAGTCAGAAAGA+AGG - chr1_2:57876206-57876225 Msa0079840:intron 35.0%
! ATCGAGGATATTTTCTCCTA+CGG + chr1_2:57876264-57876283 None:intergenic 35.0%
AAGGATTTACAAGACTGTCT+TGG - chr1_2:57876429-57876448 Msa0079840:CDS 35.0%
TTCACACTTGCCATATTTGT+TGG + chr1_2:57876477-57876496 None:intergenic 35.0%
GTAAAGGACGGATGATAATT+TGG - chr1_2:57876582-57876601 Msa0079840:CDS 35.0%
!! TGAATTGTTTTGTCAGCATG+TGG - chr1_2:57876653-57876672 Msa0079840:intron 35.0%
!! GAATTGTTTTGTCAGCATGT+GGG - chr1_2:57876654-57876673 Msa0079840:intron 35.0%
GATGACCATAACGATAATGA+TGG - chr1_2:57876785-57876804 Msa0079840:intron 35.0%
CATGTCCATCATTATCGTTA+TGG + chr1_2:57876793-57876812 None:intergenic 35.0%
!!! ATCCCTTTTTAGCTAGCATA+CGG - chr1_2:57876841-57876860 Msa0079840:intron 35.0%
AGTAGCTGTATATGTTGTCA+AGG - chr1_2:57876877-57876896 Msa0079840:intron 35.0%
CTTCAGTTTAAACAAGGCAA+CGG - chr1_2:57876916-57876935 Msa0079840:intron 35.0%
GTAACTTCAGAAGACATACA+TGG + chr1_2:57877024-57877043 None:intergenic 35.0%
!! GCAGTTGTGATCATTTTTAG+GGG - chr1_2:57877056-57877075 Msa0079840:intron 35.0%
TGCATACAAAAACCAGACAA+TGG + chr1_2:57877097-57877116 None:intergenic 35.0%
!! CTGGTTTTTGTATGCAGTAT+TGG - chr1_2:57877101-57877120 Msa0079840:intron 35.0%
!! TTTGTATGCAGTATTGGCTA+CGG - chr1_2:57877107-57877126 Msa0079840:intron 35.0%
TGCATCAAGTGCATAAAAAC+TGG + chr1_2:57877554-57877573 None:intergenic 35.0%
AGAACAATGTTGTGCAACAG+AGG - chr1_2:57875028-57875047 Msa0079840:three_prime_UTR 40.0%
! GAAGATTTGAGGTTGAGAAG+TGG + chr1_2:57875137-57875156 None:intergenic 40.0%
! GGAAATGAGAGAGGTTGATT+TGG + chr1_2:57875174-57875193 None:intergenic 40.0%
! TTCAGCCCAGTTTTACTTAG+TGG - chr1_2:57875329-57875348 Msa0079840:three_prime_UTR 40.0%
!!! AGCTGATGCTTTTGAGTTTG+CGG - chr1_2:57876121-57876140 Msa0079840:intron 40.0%
! TGAGTTTGCGGACCAAATTT+TGG - chr1_2:57876133-57876152 Msa0079840:intron 40.0%
GATACCAACGCTCCAAAATT+TGG + chr1_2:57876148-57876167 None:intergenic 40.0%
!! TTCCTAATGGCTAGTGGATT+TGG - chr1_2:57876313-57876332 Msa0079840:intron 40.0%
ATCCAAATCCACTAGCCATT+AGG + chr1_2:57876318-57876337 None:intergenic 40.0%
AGTTGAGGTTGTGCTTTATC+AGG - chr1_2:57876713-57876732 Msa0079840:intron 40.0%
GTTGAGGTTGTGCTTTATCA+GGG - chr1_2:57876714-57876733 Msa0079840:intron 40.0%
TTGAGGTTGTGCTTTATCAG+GGG - chr1_2:57876715-57876734 Msa0079840:intron 40.0%
GACCGTATGCTAGCTAAAAA+GGG + chr1_2:57876846-57876865 None:intergenic 40.0%
TTTCAGCAGGGTGATAAACT+AGG - chr1_2:57876941-57876960 Msa0079840:intron 40.0%
TTCAGCAGGGTGATAAACTA+GGG - chr1_2:57876942-57876961 Msa0079840:intron 40.0%
AACACACTACTACCATTGTC+TGG - chr1_2:57877082-57877101 Msa0079840:intron 40.0%
GGACAATTCTCTCTTGTAGT+TGG - chr1_2:57877276-57877295 Msa0079840:CDS 40.0%
CAATTCTCTCTTGTAGTTGG+AGG - chr1_2:57877279-57877298 Msa0079840:CDS 40.0%
TCTTGTAGTTGGAGGTTTGT+TGG - chr1_2:57877287-57877306 Msa0079840:CDS 40.0%
GGTTGTCATGAGGAAGATGA+GGG + chr1_2:57875090-57875109 None:intergenic 45.0%
GAGGAAAAAGGGTTGTCATG+AGG + chr1_2:57875100-57875119 None:intergenic 45.0%
GAGAGAGTTGGGAGGAAAAA+GGG + chr1_2:57875111-57875130 None:intergenic 45.0%
AGAGAGAGTTGGGAGGAAAA+AGG + chr1_2:57875112-57875131 None:intergenic 45.0%
AGAAGTGGAGAGAGAGAGTT+GGG + chr1_2:57875122-57875141 None:intergenic 45.0%
GGAGAGAAGGTGAAGATTTG+AGG + chr1_2:57875148-57875167 None:intergenic 45.0%
!! GTTGATTTGGGTTGGAGAGA+AGG + chr1_2:57875161-57875180 None:intergenic 45.0%
!! TGAGAGAGGTTGATTTGGGT+TGG + chr1_2:57875169-57875188 None:intergenic 45.0%
GGGTTTGTAGGAAATGAGAG+AGG + chr1_2:57875183-57875202 None:intergenic 45.0%
CAAGGTTGTGCATGAAGGAA+GGG + chr1_2:57875255-57875274 None:intergenic 45.0%
TTGCTCACTCATGCTCAACA+GGG - chr1_2:57875272-57875291 Msa0079840:three_prime_UTR 45.0%
TAATGAGCGTCCACCTAAAG+AGG - chr1_2:57875382-57875401 Msa0079840:CDS 45.0%
TCAACCACATAGGCCTCTTT+AGG + chr1_2:57875398-57875417 None:intergenic 45.0%
TCCAGCATCATCAACCACAT+AGG + chr1_2:57875408-57875427 None:intergenic 45.0%
TTGGTATCCTTCTGTGGAAG+AGG - chr1_2:57876160-57876179 Msa0079840:intron 45.0%
TGGTATCCTTCTGTGGAAGA+GGG - chr1_2:57876161-57876180 Msa0079840:intron 45.0%
TCATTACCCTCTTCCACAGA+AGG + chr1_2:57876170-57876189 None:intergenic 45.0%
TGTGGAAGAGGGTAATGACA+AGG - chr1_2:57876172-57876191 Msa0079840:intron 45.0%
GTGGAAGAGGGTAATGACAA+GGG - chr1_2:57876173-57876192 Msa0079840:intron 45.0%
CAGAAAGAAGGAGCAGTTAC+TGG - chr1_2:57876218-57876237 Msa0079840:intron 45.0%
AAAGAAGGAGCAGTTACTGG+TGG - chr1_2:57876221-57876240 Msa0079840:intron 45.0%
!! TCTCTGAAACAGTAGCATCG+AGG + chr1_2:57876280-57876299 None:intergenic 45.0%
ACTGTTTCAGAGAACCTTCC+AGG - chr1_2:57876287-57876306 Msa0079840:intron 45.0%
ACCTTCCAGGTACTTCCTAA+TGG - chr1_2:57876300-57876319 Msa0079840:intron 45.0%
!! ACTAGCCATTAGGAAGTACC+TGG + chr1_2:57876308-57876327 None:intergenic 45.0%
AGGTACTTCCTAATGGCTAG+TGG - chr1_2:57876307-57876326 Msa0079840:intron 45.0%
GGACCGTATGCTAGCTAAAA+AGG + chr1_2:57876847-57876866 None:intergenic 45.0%
!! AAGGCAACGGATTTTCAGCA+GGG - chr1_2:57876929-57876948 Msa0079840:intron 45.0%
CGTTTGTCGTCTTTAACCGA+GGG + chr1_2:57877213-57877232 None:intergenic 45.0%
ACGTTTGTCGTCTTTAACCG+AGG + chr1_2:57877214-57877233 None:intergenic 45.0%
GAAGAGACAGAAGAAAAGCG+TGG - chr1_2:57877255-57877274 Msa0079840:CDS 45.0%
GTCATGAGGAAGATGAGGGA+GGG + chr1_2:57875086-57875105 None:intergenic 50.0%
TGTCATGAGGAAGATGAGGG+AGG + chr1_2:57875087-57875106 None:intergenic 50.0%
GGGTTGTCATGAGGAAGATG+AGG + chr1_2:57875091-57875110 None:intergenic 50.0%
GAGAAGTGGAGAGAGAGAGT+TGG + chr1_2:57875123-57875142 None:intergenic 50.0%
GTTGTGCATGAAGGAAGGGT+TGG + chr1_2:57875251-57875270 None:intergenic 50.0%
GCAAGGTTGTGCATGAAGGA+AGG + chr1_2:57875256-57875275 None:intergenic 50.0%
GTGAGCAAGGTTGTGCATGA+AGG + chr1_2:57875260-57875279 None:intergenic 50.0%
CTGTTGAGCATGAGTGAGCA+AGG + chr1_2:57875273-57875292 None:intergenic 50.0%
CTTGCTCACTCATGCTCAAC+AGG - chr1_2:57875271-57875290 Msa0079840:three_prime_UTR 50.0%
TCCACCTAAAGAGGCCTATG+TGG - chr1_2:57875391-57875410 Msa0079840:CDS 50.0%
ACCACATAGGCCTCTTTAGG+TGG + chr1_2:57875395-57875414 None:intergenic 50.0%
!! GCCTATGTGGTTGATGATGC+TGG - chr1_2:57875404-57875423 Msa0079840:CDS 50.0%
!!! CGGACCAAATTTTGGAGCGT+TGG - chr1_2:57876141-57876160 Msa0079840:intron 50.0%
!! GGGTAATGACAAGGGTGTTG+TGG - chr1_2:57876181-57876200 Msa0079840:intron 50.0%
CCTACGGCTTGAACAAAAGC+AGG + chr1_2:57876248-57876267 None:intergenic 50.0%
!! CCTGCTTTTGTTCAAGCCGT+AGG - chr1_2:57876245-57876264 Msa0079840:intron 50.0%
!! GCCATTAGGAAGTACCTGGA+AGG + chr1_2:57876304-57876323 None:intergenic 50.0%
!! CAAGGCAACGGATTTTCAGC+AGG - chr1_2:57876928-57876947 Msa0079840:intron 50.0%
! CGACTAGTTGCTGCCATTGA+CGG - chr1_2:57877168-57877187 Msa0079840:intron 50.0%
AGGATCTGGAAGTCCGTCAA+TGG + chr1_2:57877184-57877203 None:intergenic 50.0%
!! ATTGACGGACTTCCAGATCC+TGG - chr1_2:57877183-57877202 Msa0079840:intron 50.0%
GGGAGGGTTGGAATGAGGAA+AGG + chr1_2:57875070-57875089 None:intergenic 55.0%
GATGAGGGAGGGTTGGAATG+AGG + chr1_2:57875075-57875094 None:intergenic 55.0%
TGAGGAAGATGAGGGAGGGT+TGG + chr1_2:57875082-57875101 None:intergenic 55.0%
AGTGGAGAGAGAGAGTTGGG+AGG + chr1_2:57875119-57875138 None:intergenic 55.0%
GTGCATGAAGGAAGGGTTGG+TGG + chr1_2:57875248-57875267 None:intergenic 55.0%
!! GGAGCGTTGGTATCCTTCTG+TGG - chr1_2:57876154-57876173 Msa0079840:intron 55.0%
TCTTTAACCGAGGGACCACC+AGG + chr1_2:57877204-57877223 None:intergenic 55.0%
! GACGGACTTCCAGATCCTGG+TGG - chr1_2:57877186-57877205 Msa0079840:intron 60.0%
TCCAGATCCTGGTGGTCCCT+CGG - chr1_2:57877194-57877213 Msa0079840:CDS 60.0%
ACCGAGGGACCACCAGGATC+TGG + chr1_2:57877198-57877217 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 57875004 57877714 57875004 ID=Msa0079840;Name=Msa0079840
chr1_2 mRNA 57875004 57877714 57875004 ID=Msa0079840-mRNA-1;Parent=Msa0079840;Name=Msa0079840-mRNA-1;_AED=0.05;_eAED=0.05;_QI=97|0.25|0.6|0.6|1|1|5|349|332
chr1_2 exon 57875004 57875600 57875004 ID=Msa0079840-mRNA-1:exon:18399;Parent=Msa0079840-mRNA-1
chr1_2 exon 57875768 57875819 57875768 ID=Msa0079840-mRNA-1:exon:18398;Parent=Msa0079840-mRNA-1
chr1_2 exon 57875907 57875983 57875907 ID=Msa0079840-mRNA-1:exon:18397;Parent=Msa0079840-mRNA-1
chr1_2 exon 57876410 57876602 57876410 ID=Msa0079840-mRNA-1:exon:18396;Parent=Msa0079840-mRNA-1
chr1_2 exon 57877189 57877714 57877189 ID=Msa0079840-mRNA-1:exon:18395;Parent=Msa0079840-mRNA-1
chr1_2 five_prime_UTR 57877618 57877714 57877618 ID=Msa0079840-mRNA-1:five_prime_utr;Parent=Msa0079840-mRNA-1
chr1_2 CDS 57877189 57877617 57877189 ID=Msa0079840-mRNA-1:cds;Parent=Msa0079840-mRNA-1
chr1_2 CDS 57876410 57876602 57876410 ID=Msa0079840-mRNA-1:cds;Parent=Msa0079840-mRNA-1
chr1_2 CDS 57875907 57875983 57875907 ID=Msa0079840-mRNA-1:cds;Parent=Msa0079840-mRNA-1
chr1_2 CDS 57875768 57875819 57875768 ID=Msa0079840-mRNA-1:cds;Parent=Msa0079840-mRNA-1
chr1_2 CDS 57875353 57875600 57875353 ID=Msa0079840-mRNA-1:cds;Parent=Msa0079840-mRNA-1
chr1_2 three_prime_UTR 57875004 57875352 57875004 ID=Msa0079840-mRNA-1:three_prime_utr;Parent=Msa0079840-mRNA-1
Gene Sequence

>Msa0079840

ATGACAACCCTTTTTCCTCCCAACTCTCTCTCTCCACTTCTCAACCTCAAATCTTCACCTTCTCTCCAACCCAAATCAACCTCTCTCATTTCCTACAAACCCATTGTTTCTAATCTCAAAAAGACTCAAACTTTATCTCTAAAACCACCAACCCTTCCTTCATGCACAACCTTGCTCACTCATGCTCAACAGGGTCTTGCAGCTTTAGCTATCACTTTAGCATTGAATTTCAGCCCAGTTTTACTTAGTGGTAATGCATTGGCTTCTGAATTTGATGTGATTAATGAGCGTCCACCTAAAGAGGCCTATGTGGTTGATGATGCTGGAGTTCTTAGTAGAGTCACTAAGTCTGATTTGAAACGTTTGTTATCTGATTTGGAATCAAGGAAGAATTTTCATATCAATTTTATTACACTTAGAAAACTCACGAGTAAAGCTGATGCTTTTGAGTTTGCGGACCAAATTTTGGAGCGTTGGTATCCTTCTGTGGAAGAGGGTAATGACAAGGGTGTTGTGGTTCTTGTAACAAGTCAGAAAGAAGGAGCAGTTACTGGTGGACCTGCTTTTGTTCAAGCCGTAGGAGAAAATATCCTCGATGCTACTGTTTCAGAGAACCTTCCAGGGGCACTTTCAAGAAGCAAGATTGCAGACACTCCAATGATCAATGATCATGATGACCATAACGATAATGATGGACATGCTTATCCGCCTACATACTTCAGTTTAAACAAGGCAACGGATTTTCAGCAGGTATTGGCTACGGATGAGAAGTACAATGAAGCAATTTATAGCACTGCTAAACGACTAGTTGCTGCCATTGACGGACTTCCAGATCCTGGTGGTCCCTCGGTTAAAGACGACAAACGTGAGTCTAACTTCAAAACAAAGGAAGAGACAGAAGAAAAGCGTGGACAATTCTCTCTTGTAGTTGGAGGTTTGTTGGTTATTGCATTTGTTGTTCCTATGGTACAATACTATGCTTATGTAGCCAAAAAATAA

Protein sequence

>Msa0079840

MTTLFPPNSLSPLLNLKSSPSLQPKSTSLISYKPIVSNLKKTQTLSLKPPTLPSCTTLLTHAQQGLAALAITLALNFSPVLLSGNALASEFDVINERPPKEAYVVDDAGVLSRVTKSDLKRLLSDLESRKNFHINFITLRKLTSKADAFEFADQILERWYPSVEEGNDKGVVVLVTSQKEGAVTGGPAFVQAVGENILDATVSENLPGALSRSKIADTPMINDHDDHNDNDGHAYPPTYFSLNKATDFQQVLATDEKYNEAIYSTAKRLVAAIDGLPDPGGPSVKDDKRESNFKTKEETEEKRGQFSLVVGGLLVIAFVVPMVQYYAYVAKK*