AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0580890


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0580890 MtrunA17_Chr7g0276051 77.358 265 7 3 1 212 1 265 1.63e-136 383
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0580890 AT3G61870.1 70.297 202 35 2 36 212 71 272 3.27e-95 279
Msa0580890 AT3G61870.2 76.667 120 26 1 36 153 71 190 2.74e-63 197

Find 80 sgRNAs with CRISPR-Local

Find 258 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGCTTACCTCAGTAAGTTTC+TGG 0.119805 4_1:+86201759 None:intergenic
CAGAGCAATGTGAAGATTTC+TGG 0.157106 4_1:+86200141 None:intergenic
TACTCTATATGCTGGCTATT+TGG 0.163712 4_1:-86201915 Msa0580890:CDS
ACTCTATATGCTGGCTATTT+GGG 0.167865 4_1:-86201914 Msa0580890:CDS
CTTGGTTTAGGTTTGATTAA+AGG 0.236613 4_1:-86199384 Msa0580890:intron
AATGCTGGATCCATACTTCT+AGG 0.237863 4_1:-86201393 Msa0580890:CDS
GGGAGGGACAATATTGAATT+TGG 0.249343 4_1:+86202220 None:intergenic
CTTGCTGTTGGTGGAGAGTT+TGG 0.257500 4_1:-86202001 Msa0580890:CDS
CTACAGGCATTACCGTCTTA+TGG 0.261340 4_1:-86200213 Msa0580890:intron
TTGGTTTAGGTTTGATTAAA+GGG 0.300921 4_1:-86199383 Msa0580890:intron
TGATCAACGGAAAATATCTA+AGG 0.322176 4_1:+86199171 None:intergenic
GGATCCATACTTCTAGGATT+TGG 0.333492 4_1:-86201387 Msa0580890:CDS
GACACCAAATCCTAGAAGTA+TGG 0.335633 4_1:+86201383 None:intergenic
GGTGGCAATGGCGCCGAGTT+AGG 0.351922 4_1:-86201892 Msa0580890:CDS
TTCTGGATTTGAAGTTCAAC+AGG 0.366516 4_1:+86201776 None:intergenic
CCACTGGACTTGATATTGTA+TGG 0.370736 4_1:-86200081 Msa0580890:CDS
TTGCTGTTGGTGGAGAGTTT+GGG 0.379213 4_1:-86202000 Msa0580890:CDS
TACAGGCATTACCGTCTTAT+GGG 0.383650 4_1:-86200212 Msa0580890:intron
AAATGCATCATATATATTCA+TGG 0.389220 4_1:-86199110 Msa0580890:three_prime_UTR
CCATCAGGGGCGACCGGTGC+AGG 0.389468 4_1:+86201827 None:intergenic
CTCATTCACCCCATTGTGTT+GGG 0.394218 4_1:-86201953 Msa0580890:CDS
TCTAGGATTTGGTGTCTTTG+AGG 0.397090 4_1:-86201376 Msa0580890:CDS
CCAACCTCATTAATGTATCT+TGG 0.399710 4_1:-86199242 Msa0580890:three_prime_UTR
GTTTCAAGTGCTTTACCATC+AGG 0.409813 4_1:+86201812 None:intergenic
AAGTGTTTGAGTTCACAAAA+TGG 0.411552 4_1:-86200057 Msa0580890:CDS
TTCTTCTATACTCTATATGC+TGG 0.412278 4_1:-86201923 Msa0580890:CDS
CAAGAGGCAAGCCTTAAAAC+AGG 0.419777 4_1:+86199304 None:intergenic
AACAAACCACCCAACACAAT+GGG 0.420393 4_1:+86201944 None:intergenic
CCAAGATACATTAATGAGGT+TGG 0.420787 4_1:+86199242 None:intergenic
GGAGAGTTTGGGATATTTGA+AGG 0.424876 4_1:-86201989 Msa0580890:CDS
GTTTCACTGCCTTTCTGCAT+CGG 0.434740 4_1:+86200166 None:intergenic
CAAGATACATTAATGAGGTT+GGG 0.443778 4_1:+86199243 None:intergenic
AGCTTATCAAAGGTTCATAC+AGG 0.459882 4_1:-86201428 Msa0580890:CDS
GGGACAATATTGAATTTGGA+TGG 0.460106 4_1:+86202224 None:intergenic
TTTGGTGTCTTTGAGGCTGT+TGG 0.460543 4_1:-86201369 Msa0580890:intron
TTTGTGTGGCAGATTCCCAC+TGG 0.462816 4_1:-86200097 Msa0580890:CDS
GTTTGATTAAAGGGACATCA+TGG 0.474909 4_1:-86199374 Msa0580890:three_prime_UTR
TTAAAGGGACATCATGGATC+CGG 0.474966 4_1:-86199368 Msa0580890:three_prime_UTR
TCTCATTCACCCCATTGTGT+TGG 0.487054 4_1:-86201954 Msa0580890:CDS
TGTCTTGATGCTTGAAAGAA+TGG 0.487965 4_1:+86202280 None:intergenic
CTGGCTATTTGGGGTGGCAA+TGG 0.493451 4_1:-86201904 Msa0580890:CDS
AACTGAGAGCTAAGTAAAGA+AGG 0.498417 4_1:+86199198 None:intergenic
CAGGATGCACTTGCTGTTGG+TGG 0.511437 4_1:-86202010 Msa0580890:CDS
CCTGCACCGGTCGCCCCTGA+TGG 0.520003 4_1:-86201827 Msa0580890:CDS
CTCTATCATTGAACTCGACC+CGG 0.522465 4_1:+86199349 None:intergenic
GCTTTACCATCAGGGGCGAC+CGG 0.523702 4_1:+86201821 None:intergenic
ATTCACCCCATTGTGTTGGG+TGG 0.524385 4_1:-86201950 Msa0580890:CDS
AGGGATAAACACTTTAATGC+TGG 0.528614 4_1:-86201408 Msa0580890:CDS
CTCTATATGCTGGCTATTTG+GGG 0.531439 4_1:-86201913 Msa0580890:CDS
CATTACCGTCTTATGGGCAC+TGG 0.546801 4_1:-86200206 Msa0580890:CDS
TTCAAGTGCTTTACCATCAG+GGG 0.547033 4_1:+86201814 None:intergenic
AACAGCAAGTTTGTGATCAA+CGG 0.547060 4_1:+86199158 None:intergenic
ATATTGAATTTGGATGGAAG+TGG 0.548645 4_1:+86202230 None:intergenic
ATTTGAAGTTCAACAGGTGA+TGG 0.552879 4_1:+86201782 None:intergenic
ACTCAAATGTACACAACAAG+AGG 0.562024 4_1:+86199288 None:intergenic
TGAATGTTCTTCTCTTTGTG+TGG 0.562680 4_1:-86200111 Msa0580890:CDS
TTTCAAGTGCTTTACCATCA+GGG 0.566094 4_1:+86201813 None:intergenic
ATATGAGAATCATACATTCA+AGG 0.567075 4_1:+86200034 None:intergenic
TAAAGGGACATCATGGATCC+GGG 0.567503 4_1:-86199367 Msa0580890:three_prime_UTR
GAGAGGAAAGAGCTTATCAA+AGG 0.578252 4_1:-86201438 Msa0580890:CDS
GAAACAACTCAAACCTGCAC+CGG 0.583822 4_1:-86201840 Msa0580890:CDS
GAACAAACCACCCAACACAA+TGG 0.584006 4_1:+86201943 None:intergenic
TCTTCCAAGATACATTAATG+AGG 0.586730 4_1:+86199238 None:intergenic
TGCTGCCAGTGCCCATAAGA+CGG 0.586926 4_1:+86200201 None:intergenic
GTTCAATGATAGAGATGAGA+CGG 0.590996 4_1:-86199340 Msa0580890:three_prime_UTR
TCACTGCCTTTCTGCATCGG+TGG 0.596727 4_1:+86200169 None:intergenic
CTAGTACCACCGATGCAGAA+AGG 0.597429 4_1:-86200175 Msa0580890:CDS
GTCTTGATGCTTGAAAGAAT+GGG 0.604119 4_1:+86202281 None:intergenic
AAACAGGATGCACTTGCTGT+TGG 0.612832 4_1:-86202013 Msa0580890:intron
CCATACAATATCAAGTCCAG+TGG 0.632516 4_1:+86200081 None:intergenic
TGAAGTTCAACAGGTGATGG+CGG 0.633139 4_1:+86201785 None:intergenic
AAGCTTGACAAGACTGAGTG+TGG 0.639748 4_1:+86202304 None:intergenic
AAGAGGCAAGCCTTAAAACA+GGG 0.655431 4_1:+86199305 None:intergenic
TATATGCTGGCTATTTGGGG+TGG 0.656872 4_1:-86201910 Msa0580890:CDS
CATACAATATCAAGTCCAGT+GGG 0.666329 4_1:+86200082 None:intergenic
GCTTATCAAAGGTTCATACA+GGG 0.677877 4_1:-86201427 Msa0580890:CDS
CTTGACAAGACTGAGTGTGG+AGG 0.697793 4_1:+86202307 None:intergenic
AGAGGCAAGCCTTAAAACAG+GGG 0.702527 4_1:+86199306 None:intergenic
ACAAACCACCCAACACAATG+GGG 0.717466 4_1:+86201945 None:intergenic
TCAAATCCAGAAACTTACTG+AGG 0.721925 4_1:-86201765 Msa0580890:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATTATTTTTTTGTGATGTA+AGG - chr4_1:86199732-86199751 Msa0580890:intron 15.0%
!! AAAACAAAAGAGTAAAGATA+TGG + chr4_1:86199351-86199370 None:intergenic 20.0%
!! TTTATTTAACAGAAGCAAAA+AGG + chr4_1:86200260-86200279 None:intergenic 20.0%
!!! CACATAAAATATTAGTTTGT+TGG + chr4_1:86201047-86201066 None:intergenic 20.0%
!!! AACTAATATTTTATGTGATC+CGG - chr4_1:86201050-86201069 Msa0580890:intron 20.0%
!!! TAAAGAAAATTGATAACACT+TGG - chr4_1:86201166-86201185 Msa0580890:intron 20.0%
!! TTTACTTTCAAATCAGTATT+TGG - chr4_1:86201422-86201441 Msa0580890:CDS 20.0%
!! TACTACATTATACAAAAGAA+TGG + chr4_1:86201542-86201561 None:intergenic 20.0%
!! ACGTTCAAATTATTACATAA+AGG - chr4_1:86201577-86201596 Msa0580890:intron 20.0%
!! CAAATTATTACATAAAGGAA+TGG - chr4_1:86201582-86201601 Msa0580890:intron 20.0%
!! CAATTGTTTAGAAATATTGT+TGG - chr4_1:86201630-86201649 Msa0580890:intron 20.0%
!! AATTTAGATTAAATCAAGCA+AGG - chr4_1:86201663-86201682 Msa0580890:intron 20.0%
!! AAACTATGTTGAAAATTTGA+AGG - chr4_1:86201739-86201758 Msa0580890:intron 20.0%
!!! TATGTTTTAGACGTAAATAA+AGG - chr4_1:86201803-86201822 Msa0580890:CDS 20.0%
!! AAATTAAAACAAAGTTGAAG+TGG + chr4_1:86201974-86201993 None:intergenic 20.0%
!! TTAATTTCTTTCATGAAACA+AGG - chr4_1:86201987-86202006 Msa0580890:CDS 20.0%
!! AAATGCATCATATATATTCA+TGG - chr4_1:86202303-86202322 Msa0580890:CDS 20.0%
! ATCTAATGAAAACTTTAGTG+GGG + chr4_1:86199220-86199239 None:intergenic 25.0%
! GATCTAATGAAAACTTTAGT+GGG + chr4_1:86199221-86199240 None:intergenic 25.0%
! TGATCTAATGAAAACTTTAG+TGG + chr4_1:86199222-86199241 None:intergenic 25.0%
! AATCACATTTCCATTCTTAT+TGG - chr4_1:86199284-86199303 Msa0580890:three_prime_UTR 25.0%
! AAAGATATGGATGAAAGAAT+AGG + chr4_1:86199338-86199357 None:intergenic 25.0%
! TTTCAACAACATTCATATCA+TGG + chr4_1:86199383-86199402 None:intergenic 25.0%
! AGCATGCAATAATACATAAA+GGG + chr4_1:86199689-86199708 None:intergenic 25.0%
! AAGCATGCAATAATACATAA+AGG + chr4_1:86199690-86199709 None:intergenic 25.0%
! CAAACTTAGTATTAAAATCC+AGG + chr4_1:86199878-86199897 None:intergenic 25.0%
!! AATTTGCTCTTGAATCAAAT+GGG + chr4_1:86200152-86200171 None:intergenic 25.0%
!!! TAATTTGCTCTTGAATCAAA+TGG + chr4_1:86200153-86200172 None:intergenic 25.0%
! AAGTACATTTAGAAAACAGA+GGG + chr4_1:86200217-86200236 None:intergenic 25.0%
! TAAGTACATTTAGAAAACAG+AGG + chr4_1:86200218-86200237 None:intergenic 25.0%
!!! CACAAACTTGTTAAATCTTA+AGG - chr4_1:86200462-86200481 Msa0580890:intron 25.0%
! ACATAGATGAACTTATTAGT+GGG - chr4_1:86200495-86200514 Msa0580890:intron 25.0%
!!! TGATTATCACTTTTCTGAAT+GGG + chr4_1:86200646-86200665 None:intergenic 25.0%
!!! TTGATTATCACTTTTCTGAA+TGG + chr4_1:86200647-86200666 None:intergenic 25.0%
! TCACATTGAGAGAAAAATAA+GGG - chr4_1:86200798-86200817 Msa0580890:intron 25.0%
! AATAGGGGTTACTTAAAATT+CGG + chr4_1:86200951-86200970 None:intergenic 25.0%
!! ACTAATATTTTATGTGATCC+GGG - chr4_1:86201051-86201070 Msa0580890:intron 25.0%
! ATATGAGAATCATACATTCA+AGG + chr4_1:86201382-86201401 None:intergenic 25.0%
! GATTTGAAAGTAAAATACCT+GGG + chr4_1:86201416-86201435 None:intergenic 25.0%
! TGATTTGAAAGTAAAATACC+TGG + chr4_1:86201417-86201436 None:intergenic 25.0%
! ATGTATTATGTATGAGGATT+CGG - chr4_1:86201883-86201902 Msa0580890:CDS 25.0%
! AAACCTAAACCAAGTTATTA+AGG + chr4_1:86202023-86202042 None:intergenic 25.0%
!! TTGGTTTAGGTTTGATTAAA+GGG - chr4_1:86202030-86202049 Msa0580890:intron 25.0%
ATATTGAATTTGGATGGAAG+TGG + chr4_1:86199186-86199205 None:intergenic 30.0%
ACAACATTCATATCATGGAT+TGG + chr4_1:86199378-86199397 None:intergenic 30.0%
GATATGAATGTTGTTGAAAC+AGG - chr4_1:86199384-86199403 Msa0580890:intron 30.0%
TTCTTCTATACTCTATATGC+TGG - chr4_1:86199490-86199509 Msa0580890:intron 30.0%
! CATTTTGAATAGTCCTAACT+CGG + chr4_1:86199537-86199556 None:intergenic 30.0%
ATGTATTATTGCATGCTTCT+TGG - chr4_1:86199692-86199711 Msa0580890:intron 30.0%
! TTTGTGATGTAAGGACTTTT+CGG - chr4_1:86199741-86199760 Msa0580890:intron 30.0%
AGTGGTAGTTTCATTAACTA+TGG - chr4_1:86199849-86199868 Msa0580890:intron 30.0%
TTTCATTAACTATGGTATCC+TGG - chr4_1:86199857-86199876 Msa0580890:intron 30.0%
CTAAGTTTGTAATTAGTGAG+AGG - chr4_1:86199889-86199908 Msa0580890:intron 30.0%
GCTGTTTAAAAATGCATCAA+GGG + chr4_1:86200185-86200204 None:intergenic 30.0%
! TGCTGTTTAAAAATGCATCA+AGG + chr4_1:86200186-86200205 None:intergenic 30.0%
AGTACATTTAGAAAACAGAG+GGG + chr4_1:86200216-86200235 None:intergenic 30.0%
!! AAAAAGGTGTTACCTGTAAA+TGG + chr4_1:86200244-86200263 None:intergenic 30.0%
GATGACAGGGTATAAATTTA+GGG + chr4_1:86200290-86200309 None:intergenic 30.0%
AGATGACAGGGTATAAATTT+AGG + chr4_1:86200291-86200310 None:intergenic 30.0%
! GACATTTTTACAAGATGACA+GGG + chr4_1:86200303-86200322 None:intergenic 30.0%
! AGACATTTTTACAAGATGAC+AGG + chr4_1:86200304-86200323 None:intergenic 30.0%
! ACAATTTGTTCAAACGTTCA+AGG + chr4_1:86200420-86200439 None:intergenic 30.0%
CACATAGATGAACTTATTAG+TGG - chr4_1:86200494-86200513 Msa0580890:intron 30.0%
AAAGTAGTAAAGTGAAGGTT+GGG + chr4_1:86200551-86200570 None:intergenic 30.0%
ATTAAGAAGAACTTTCTCTC+AGG + chr4_1:86200585-86200604 None:intergenic 30.0%
ATCCATAACTTGACTAAACA+AGG - chr4_1:86200605-86200624 Msa0580890:intron 30.0%
TCCATAACTTGACTAAACAA+GGG - chr4_1:86200606-86200625 Msa0580890:intron 30.0%
GTCACATTGAGAGAAAAATA+AGG - chr4_1:86200797-86200816 Msa0580890:intron 30.0%
GCATGTACTTAAGAATTAGA+GGG - chr4_1:86200827-86200846 Msa0580890:intron 30.0%
CATGTACTTAAGAATTAGAG+GGG - chr4_1:86200828-86200847 Msa0580890:intron 30.0%
ATGTACTTAAGAATTAGAGG+GGG - chr4_1:86200829-86200848 Msa0580890:intron 30.0%
!! ATTTTGAAAGATCTCAGATG+AGG - chr4_1:86200862-86200881 Msa0580890:intron 30.0%
! GATGTAATGGAAAGTAGTTA+CGG - chr4_1:86200887-86200906 Msa0580890:intron 30.0%
!! TACAAAGTGTTGTCAAATAG+TGG - chr4_1:86200992-86201011 Msa0580890:intron 30.0%
TCTTACCTTTATCCCAAAAT+TGG + chr4_1:86201081-86201100 None:intergenic 30.0%
TATATTCAATCTGACGAAGT+TGG - chr4_1:86201103-86201122 Msa0580890:intron 30.0%
ATATTCAATCTGACGAAGTT+GGG - chr4_1:86201104-86201123 Msa0580890:intron 30.0%
! AAGTGTTTGAGTTCACAAAA+TGG - chr4_1:86201356-86201375 Msa0580890:intron 30.0%
AGCAAGGTCAAATATTCTAT+AGG - chr4_1:86201679-86201698 Msa0580890:intron 30.0%
ATAACCTTACTAAAAGAAGC+TGG - chr4_1:86201839-86201858 Msa0580890:CDS 30.0%
! CTTTGTTTGAGATATAGAGT+CGG + chr4_1:86201942-86201961 None:intergenic 30.0%
! CTTGGTTTAGGTTTGATTAA+AGG - chr4_1:86202029-86202048 Msa0580890:intron 30.0%
CAAGATACATTAATGAGGTT+GGG + chr4_1:86202173-86202192 None:intergenic 30.0%
TCTTCCAAGATACATTAATG+AGG + chr4_1:86202178-86202197 None:intergenic 30.0%
TGATCAACGGAAAATATCTA+AGG + chr4_1:86202245-86202264 None:intergenic 30.0%
GTCTTGATGCTTGAAAGAAT+GGG + chr4_1:86199135-86199154 None:intergenic 35.0%
TGTCTTGATGCTTGAAAGAA+TGG + chr4_1:86199136-86199155 None:intergenic 35.0%
!!! CAACATGTTTTGAGGTTGAT+TGG + chr4_1:86199161-86199180 None:intergenic 35.0%
! AAGTGGAACAACATGTTTTG+AGG + chr4_1:86199169-86199188 None:intergenic 35.0%
GGGACAATATTGAATTTGGA+TGG + chr4_1:86199192-86199211 None:intergenic 35.0%
AATGAAAACTTTAGTGGGGT+GGG + chr4_1:86199216-86199235 None:intergenic 35.0%
TAATGAAAACTTTAGTGGGG+TGG + chr4_1:86199217-86199236 None:intergenic 35.0%
TCCATTCTTATTGGATACCA+AGG - chr4_1:86199293-86199312 Msa0580890:three_prime_UTR 35.0%
! TACTCTATATGCTGGCTATT+TGG - chr4_1:86199498-86199517 Msa0580890:intron 35.0%
! ACTCTATATGCTGGCTATTT+GGG - chr4_1:86199499-86199518 Msa0580890:intron 35.0%
! TTTCAAGTGCTTTACCATCA+GGG + chr4_1:86199603-86199622 None:intergenic 35.0%
! ATTTGAAGTTCAACAGGTGA+TGG + chr4_1:86199634-86199653 None:intergenic 35.0%
! TTCTGGATTTGAAGTTCAAC+AGG + chr4_1:86199640-86199659 None:intergenic 35.0%
TCAAATCCAGAAACTTACTG+AGG - chr4_1:86199648-86199667 Msa0580890:intron 35.0%
TATTATTGCATGCTTCTTGG+TGG - chr4_1:86199695-86199714 Msa0580890:intron 35.0%
! GGACTTTTCGGATTAAGTAA+TGG - chr4_1:86199753-86199772 Msa0580890:intron 35.0%
TGAAACTACCACTGATAAGA+AGG + chr4_1:86199842-86199861 None:intergenic 35.0%
! CTGATGAGTACCTAATTTGT+TGG - chr4_1:86199934-86199953 Msa0580890:intron 35.0%
!! TGAGTACCTAATTTGTTGGT+TGG - chr4_1:86199938-86199957 Msa0580890:intron 35.0%
CAGTAACCAACCAACAAATT+AGG + chr4_1:86199947-86199966 None:intergenic 35.0%
! TTGGTTGGTTACTGATATTC+AGG - chr4_1:86199953-86199972 Msa0580890:intron 35.0%
AGCTTATCAAAGGTTCATAC+AGG - chr4_1:86199985-86200004 Msa0580890:intron 35.0%
GCTTATCAAAGGTTCATACA+GGG - chr4_1:86199986-86200005 Msa0580890:intron 35.0%
AGGGATAAACACTTTAATGC+TGG - chr4_1:86200005-86200024 Msa0580890:intron 35.0%
GTTTAAAAATGCATCAAGGG+AGG + chr4_1:86200182-86200201 None:intergenic 35.0%
GTACATTTAGAAAACAGAGG+GGG + chr4_1:86200215-86200234 None:intergenic 35.0%
ATGTACTTACCTCCATTTAC+AGG - chr4_1:86200229-86200248 Msa0580890:intron 35.0%
AGCTCCTTCTAGATTAAGTA+CGG + chr4_1:86200356-86200375 None:intergenic 35.0%
! AGATGAACTTATTAGTGGGT+TGG - chr4_1:86200499-86200518 Msa0580890:intron 35.0%
!!! GTTGGGAGTTTTAAGTAACA+TGG + chr4_1:86200534-86200553 None:intergenic 35.0%
CAAAGTAGTAAAGTGAAGGT+TGG + chr4_1:86200552-86200571 None:intergenic 35.0%
GCATCAAAGTAGTAAAGTGA+AGG + chr4_1:86200556-86200575 None:intergenic 35.0%
AGAACTTTCTCTCAGGTTTA+AGG + chr4_1:86200578-86200597 None:intergenic 35.0%
CCATAACTTGACTAAACAAG+GGG - chr4_1:86200607-86200626 Msa0580890:intron 35.0%
CATAACTTGACTAAACAAGG+GGG - chr4_1:86200608-86200627 Msa0580890:intron 35.0%
TGTGAATTGAGAGAGATTAC+AGG - chr4_1:86200740-86200759 Msa0580890:intron 35.0%
GTGAATTGAGAGAGATTACA+GGG - chr4_1:86200741-86200760 Msa0580890:intron 35.0%
TGAATTGAGAGAGATTACAG+GGG - chr4_1:86200742-86200761 Msa0580890:intron 35.0%
! ATTAACGGTGTTAGAGGAAA+AGG - chr4_1:86200765-86200784 Msa0580890:intron 35.0%
! TTAACGGTGTTAGAGGAAAA+GGG - chr4_1:86200766-86200785 Msa0580890:intron 35.0%
CATTGAGAGAAAAATAAGGG+AGG - chr4_1:86200801-86200820 Msa0580890:intron 35.0%
CGCATGTACTTAAGAATTAG+AGG - chr4_1:86200826-86200845 Msa0580890:intron 35.0%
TCGAGTATCTCTGAACAATA+GGG + chr4_1:86200967-86200986 None:intergenic 35.0%
ATCGAGTATCTCTGAACAAT+AGG + chr4_1:86200968-86200987 None:intergenic 35.0%
TGGCAATAACAATGCTATAG+CGG - chr4_1:86201012-86201031 Msa0580890:intron 35.0%
!!! GATTGCCAATTTTGGGATAA+AGG - chr4_1:86201073-86201092 Msa0580890:intron 35.0%
! CTTGGATAATTTTTCCCTAC+AGG - chr4_1:86201184-86201203 Msa0580890:intron 35.0%
TGAATGTTCTTCTCTTTGTG+TGG - chr4_1:86201302-86201321 Msa0580890:intron 35.0%
CATACAATATCAAGTCCAGT+GGG + chr4_1:86201334-86201353 None:intergenic 35.0%
TCATATGTAAGTAAGTTCCC+AGG - chr4_1:86201396-86201415 Msa0580890:CDS 35.0%
CAATTATGTTACGAGGTCAA+AGG + chr4_1:86201486-86201505 None:intergenic 35.0%
! AGCTACATGATTTTGCATGT+AGG - chr4_1:86201779-86201798 Msa0580890:CDS 35.0%
! TTGTCCAGCTTCTTTTAGTA+AGG + chr4_1:86201846-86201865 None:intergenic 35.0%
GCATGCATGTATTATGTATG+AGG - chr4_1:86201877-86201896 Msa0580890:CDS 35.0%
TAGACACGACCTTAATAACT+TGG - chr4_1:86202011-86202030 Msa0580890:intron 35.0%
CGACCTTAATAACTTGGTTT+AGG - chr4_1:86202017-86202036 Msa0580890:intron 35.0%
GTTTGATTAAAGGGACATCA+TGG - chr4_1:86202039-86202058 Msa0580890:intron 35.0%
GTTCAATGATAGAGATGAGA+CGG - chr4_1:86202073-86202092 Msa0580890:intron 35.0%
ACTCAAATGTACACAACAAG+AGG + chr4_1:86202128-86202147 None:intergenic 35.0%
CCAAGATACATTAATGAGGT+TGG + chr4_1:86202174-86202193 None:intergenic 35.0%
CCAACCTCATTAATGTATCT+TGG - chr4_1:86202171-86202190 Msa0580890:intron 35.0%
AACTGAGAGCTAAGTAAAGA+AGG + chr4_1:86202218-86202237 None:intergenic 35.0%
AACAGCAAGTTTGTGATCAA+CGG + chr4_1:86202258-86202277 None:intergenic 35.0%
GGGAGGGACAATATTGAATT+TGG + chr4_1:86199196-86199215 None:intergenic 40.0%
TGGAAATGTGATTGCTGTGA+GGG + chr4_1:86199277-86199296 None:intergenic 40.0%
ATGGAAATGTGATTGCTGTG+AGG + chr4_1:86199278-86199297 None:intergenic 40.0%
GCCTTGGTATCCAATAAGAA+TGG + chr4_1:86199297-86199316 None:intergenic 40.0%
! GGAGAGTTTGGGATATTTGA+AGG - chr4_1:86199424-86199443 Msa0580890:intron 40.0%
AACAAACCACCCAACACAAT+GGG + chr4_1:86199472-86199491 None:intergenic 40.0%
! CTCTATATGCTGGCTATTTG+GGG - chr4_1:86199500-86199519 Msa0580890:intron 40.0%
TTCAAGTGCTTTACCATCAG+GGG + chr4_1:86199602-86199621 None:intergenic 40.0%
! GTTTCAAGTGCTTTACCATC+AGG + chr4_1:86199604-86199623 None:intergenic 40.0%
TGCTTACCTCAGTAAGTTTC+TGG + chr4_1:86199657-86199676 None:intergenic 40.0%
AGTACAAGCCTTCTTATCAG+TGG - chr4_1:86199831-86199850 Msa0580890:intron 40.0%
TGGTTACTGATATTCAGGAG+AGG - chr4_1:86199958-86199977 Msa0580890:intron 40.0%
GAGAGGAAAGAGCTTATCAA+AGG - chr4_1:86199975-86199994 Msa0580890:intron 40.0%
AATGCTGGATCCATACTTCT+AGG - chr4_1:86200020-86200039 Msa0580890:intron 40.0%
!! GGATCCATACTTCTAGGATT+TGG - chr4_1:86200026-86200045 Msa0580890:intron 40.0%
GACACCAAATCCTAGAAGTA+TGG + chr4_1:86200033-86200052 None:intergenic 40.0%
!! TCTAGGATTTGGTGTCTTTG+AGG - chr4_1:86200037-86200056 Msa0580890:exon 40.0%
! AAGGTGTTACCTGTAAATGG+AGG + chr4_1:86200241-86200260 None:intergenic 40.0%
TCTAGATTAAGTACGGCCAA+TGG + chr4_1:86200349-86200368 None:intergenic 40.0%
TTGGCCGTACTTAATCTAGA+AGG - chr4_1:86200349-86200368 Msa0580890:intron 40.0%
TTGACGAACATTCTACCTGT+CGG + chr4_1:86200395-86200414 None:intergenic 40.0%
! CCCCTTGTTTAGTCAAGTTA+TGG + chr4_1:86200610-86200629 None:intergenic 40.0%
AAAACTTCAAGCCATGTGCA+CGG - chr4_1:86200671-86200690 Msa0580890:intron 40.0%
! TTTTGATACTTCCGTGCACA+TGG + chr4_1:86200685-86200704 None:intergenic 40.0%
GAGAGATTACAGGGGATTAA+CGG - chr4_1:86200750-86200769 Msa0580890:intron 40.0%
CGAGTATCTCTGAACAATAG+GGG + chr4_1:86200966-86200985 None:intergenic 40.0%
TATCCCAAAATTGGCAATCC+CGG + chr4_1:86201072-86201091 None:intergenic 40.0%
ATCTTTGTAGCTCTCTGAGT+TGG - chr4_1:86201128-86201147 Msa0580890:intron 40.0%
TCTTTGTAGCTCTCTGAGTT+GGG - chr4_1:86201129-86201148 Msa0580890:intron 40.0%
! CTCTGAGTTGGGAATTGTAT+TGG - chr4_1:86201140-86201159 Msa0580890:intron 40.0%
ATAAGACGGTAATGCCTGTA+GGG + chr4_1:86201201-86201220 None:intergenic 40.0%
TACAGGCATTACCGTCTTAT+GGG - chr4_1:86201201-86201220 Msa0580890:intron 40.0%
CAGAGCAATGTGAAGATTTC+TGG + chr4_1:86201275-86201294 None:intergenic 40.0%
CCATACAATATCAAGTCCAG+TGG + chr4_1:86201335-86201354 None:intergenic 40.0%
CCACTGGACTTGATATTGTA+TGG - chr4_1:86201332-86201351 Msa0580890:intron 40.0%
TGACACGCAATTATGTTACG+AGG + chr4_1:86201493-86201512 None:intergenic 40.0%
CAATTGCCTACCAAATGACA+AGG + chr4_1:86201616-86201635 None:intergenic 40.0%
TGAGATATAGAGTCGGAGAT+GGG + chr4_1:86201935-86201954 None:intergenic 40.0%
TTGAGATATAGAGTCGGAGA+TGG + chr4_1:86201936-86201955 None:intergenic 40.0%
TTAAAGGGACATCATGGATC+CGG - chr4_1:86202045-86202064 Msa0580890:intron 40.0%
AAGAGGCAAGCCTTAAAACA+GGG + chr4_1:86202111-86202130 None:intergenic 40.0%
AAGCTTGACAAGACTGAGTG+TGG + chr4_1:86199112-86199131 None:intergenic 45.0%
AAAACTTTAGTGGGGTGGGA+GGG + chr4_1:86199212-86199231 None:intergenic 45.0%
!! AAACAGGATGCACTTGCTGT+TGG - chr4_1:86199400-86199419 Msa0580890:intron 45.0%
! TTGCTGTTGGTGGAGAGTTT+GGG - chr4_1:86199413-86199432 Msa0580890:intron 45.0%
TCTCATTCACCCCATTGTGT+TGG - chr4_1:86199459-86199478 Msa0580890:intron 45.0%
CTCATTCACCCCATTGTGTT+GGG - chr4_1:86199460-86199479 Msa0580890:intron 45.0%
ACAAACCACCCAACACAATG+GGG + chr4_1:86199471-86199490 None:intergenic 45.0%
GAACAAACCACCCAACACAA+TGG + chr4_1:86199473-86199492 None:intergenic 45.0%
! TATATGCTGGCTATTTGGGG+TGG - chr4_1:86199503-86199522 Msa0580890:intron 45.0%
GAAACAACTCAAACCTGCAC+CGG - chr4_1:86199573-86199592 Msa0580890:intron 45.0%
! TGAAGTTCAACAGGTGATGG+CGG + chr4_1:86199631-86199650 None:intergenic 45.0%
!! TTTGGTGTCTTTGAGGCTGT+TGG - chr4_1:86200044-86200063 Msa0580890:exon 45.0%
GAGGACTCAACACATGGTTA+AGG - chr4_1:86200069-86200088 Msa0580890:CDS 45.0%
CTCAACACATGGTTAAGGAC+AGG - chr4_1:86200074-86200093 Msa0580890:CDS 45.0%
! AGGACAGGAAAGCTATTTCC+AGG - chr4_1:86200089-86200108 Msa0580890:CDS 45.0%
CCTGCAAATAAATGTGGACC+TGG + chr4_1:86200110-86200129 None:intergenic 45.0%
CCAGGTCCACATTTATTTGC+AGG - chr4_1:86200107-86200126 Msa0580890:CDS 45.0%
CCTGCTCCTGCAAATAAATG+TGG + chr4_1:86200116-86200135 None:intergenic 45.0%
CCACATTTATTTGCAGGAGC+AGG - chr4_1:86200113-86200132 Msa0580890:CDS 45.0%
!! CCTGTCGGTTTCAAACTCTT+GGG + chr4_1:86200380-86200399 None:intergenic 45.0%
!! ACCTGTCGGTTTCAAACTCT+TGG + chr4_1:86200381-86200400 None:intergenic 45.0%
CACAATCATAACCCCCACTT+TGG + chr4_1:86200724-86200743 None:intergenic 45.0%
CTCAGATGAGGTCGATGTAA+TGG - chr4_1:86200874-86200893 Msa0580890:intron 45.0%
! TGATCCGGGATTGCCAATTT+TGG - chr4_1:86201065-86201084 Msa0580890:intron 45.0%
! GATCCGGGATTGCCAATTTT+GGG - chr4_1:86201066-86201085 Msa0580890:intron 45.0%
CATAAGACGGTAATGCCTGT+AGG + chr4_1:86201202-86201221 None:intergenic 45.0%
CTACAGGCATTACCGTCTTA+TGG - chr4_1:86201200-86201219 Msa0580890:intron 45.0%
GTTTCACTGCCTTTCTGCAT+CGG + chr4_1:86201250-86201269 None:intergenic 45.0%
! CTAGCACCTTGTCATTTGGT+AGG - chr4_1:86201607-86201626 Msa0580890:intron 45.0%
! ATAGAGTCGGAGATGGGTTT+GGG + chr4_1:86201929-86201948 None:intergenic 45.0%
! TATAGAGTCGGAGATGGGTT+TGG + chr4_1:86201930-86201949 None:intergenic 45.0%
TAAAGGGACATCATGGATCC+GGG - chr4_1:86202046-86202065 Msa0580890:intron 45.0%
CTCTATCATTGAACTCGACC+CGG + chr4_1:86202067-86202086 None:intergenic 45.0%
! TGTGTGCATCCCCTGTTTTA+AGG - chr4_1:86202098-86202117 Msa0580890:intron 45.0%
AGAGGCAAGCCTTAAAACAG+GGG + chr4_1:86202110-86202129 None:intergenic 45.0%
CAAGAGGCAAGCCTTAAAAC+AGG + chr4_1:86202112-86202131 None:intergenic 45.0%
CTTGACAAGACTGAGTGTGG+AGG + chr4_1:86199109-86199128 None:intergenic 50.0%
GAAAACTTTAGTGGGGTGGG+AGG + chr4_1:86199213-86199232 None:intergenic 50.0%
!! CTTGCTGTTGGTGGAGAGTT+TGG - chr4_1:86199412-86199431 Msa0580890:intron 50.0%
ATTCACCCCATTGTGTTGGG+TGG - chr4_1:86199463-86199482 Msa0580890:intron 50.0%
TTGGTGGAGGACTCAACACA+TGG - chr4_1:86200063-86200082 Msa0580890:CDS 50.0%
AATGGTGACCGTGGCACTTT+GGG + chr4_1:86200331-86200350 None:intergenic 50.0%
! CCCAAGAGTTTGAAACCGAC+AGG - chr4_1:86200377-86200396 Msa0580890:intron 50.0%
ACTTTGGCGCACACAGAGAA+AGG + chr4_1:86200708-86200727 None:intergenic 50.0%
TTTCTCTGTGTGCGCCAAAG+TGG - chr4_1:86200707-86200726 Msa0580890:intron 50.0%
TTCTCTGTGTGCGCCAAAGT+GGG - chr4_1:86200708-86200727 Msa0580890:intron 50.0%
! CAGGGGATTAACGGTGTTAG+AGG - chr4_1:86200759-86200778 Msa0580890:intron 50.0%
! ACGGTGTTAGAGGAAAAGGG+AGG - chr4_1:86200769-86200788 Msa0580890:intron 50.0%
CATTACCGTCTTATGGGCAC+TGG - chr4_1:86201207-86201226 Msa0580890:intron 50.0%
CTAGTACCACCGATGCAGAA+AGG - chr4_1:86201238-86201257 Msa0580890:intron 50.0%
TTTGTGTGGCAGATTCCCAC+TGG - chr4_1:86201316-86201335 Msa0580890:intron 50.0%
GGTGCTAGCACCTTGTCATT+TGG - chr4_1:86201603-86201622 Msa0580890:intron 50.0%
GCTTGCTTGCTTGCTTGCCT+TGG + chr4_1:86199313-86199332 None:intergenic 55.0%
!! CAGGATGCACTTGCTGTTGG+TGG - chr4_1:86199403-86199422 Msa0580890:intron 55.0%
! CTGGCTATTTGGGGTGGCAA+TGG - chr4_1:86199509-86199528 Msa0580890:intron 55.0%
!! GGTGTCTTTGAGGCTGTTGG+TGG - chr4_1:86200047-86200066 Msa0580890:exon 55.0%
!! GTCTTTGAGGCTGTTGGTGG+AGG - chr4_1:86200050-86200069 Msa0580890:exon 55.0%
! GTCTTCGTCCCAAAGTGCCA+CGG - chr4_1:86200320-86200339 Msa0580890:intron 55.0%
CAATGGTGACCGTGGCACTT+TGG + chr4_1:86200332-86200351 None:intergenic 55.0%
! CAAAGTGCCACGGTCACCAT+TGG - chr4_1:86200330-86200349 Msa0580890:intron 55.0%
TCTCTGTGTGCGCCAAAGTG+GGG - chr4_1:86200709-86200728 Msa0580890:intron 55.0%
TGCTGCCAGTGCCCATAAGA+CGG + chr4_1:86201215-86201234 None:intergenic 55.0%
TCACTGCCTTTCTGCATCGG+TGG + chr4_1:86201247-86201266 None:intergenic 55.0%
GCTTTACCATCAGGGGCGAC+CGG + chr4_1:86199595-86199614 None:intergenic 60.0%
AGTACGGCCAATGGTGACCG+TGG + chr4_1:86200340-86200359 None:intergenic 60.0%
CTCTGTGTGCGCCAAAGTGG+GGG - chr4_1:86200710-86200729 Msa0580890:intron 60.0%
! GGTGGCAATGGCGCCGAGTT+AGG - chr4_1:86199521-86199540 Msa0580890:intron 65.0%
CCATCAGGGGCGACCGGTGC+AGG + chr4_1:86199589-86199608 None:intergenic 75.0%
! CCTGCACCGGTCGCCCCTGA+TGG - chr4_1:86199586-86199605 Msa0580890:intron 75.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 86199102 86202333 86199102 ID=Msa0580890;Name=Msa0580890
chr4_1 mRNA 86199102 86202333 86199102 ID=Msa0580890-mRNA-1;Parent=Msa0580890;Name=Msa0580890-mRNA-1;_AED=0.14;_eAED=0.14;_QI=0|0.5|0.6|1|0.75|0.6|5|312|212
chr4_1 exon 86199102 86199396 86199102 ID=Msa0580890-mRNA-1:exon:31868;Parent=Msa0580890-mRNA-1
chr4_1 exon 86200034 86200229 86200034 ID=Msa0580890-mRNA-1:exon:31867;Parent=Msa0580890-mRNA-1
chr4_1 exon 86201370 86201460 86201370 ID=Msa0580890-mRNA-1:exon:31866;Parent=Msa0580890-mRNA-1
chr4_1 exon 86201766 86202029 86201766 ID=Msa0580890-mRNA-1:exon:31865;Parent=Msa0580890-mRNA-1
chr4_1 exon 86202229 86202333 86202229 ID=Msa0580890-mRNA-1:exon:31864;Parent=Msa0580890-mRNA-1
chr4_1 CDS 86202229 86202333 86202229 ID=Msa0580890-mRNA-1:cds;Parent=Msa0580890-mRNA-1
chr4_1 CDS 86201766 86202029 86201766 ID=Msa0580890-mRNA-1:cds;Parent=Msa0580890-mRNA-1
chr4_1 CDS 86201370 86201460 86201370 ID=Msa0580890-mRNA-1:cds;Parent=Msa0580890-mRNA-1
chr4_1 CDS 86200051 86200229 86200051 ID=Msa0580890-mRNA-1:cds;Parent=Msa0580890-mRNA-1
chr4_1 three_prime_UTR 86200034 86200050 86200034 ID=Msa0580890-mRNA-1:three_prime_utr;Parent=Msa0580890-mRNA-1
chr4_1 three_prime_UTR 86199102 86199396 86199102 ID=Msa0580890-mRNA-1:three_prime_utr;Parent=Msa0580890-mRNA-1
Gene Sequence

>Msa0580890

ATGGCCTCCACACTCAGTCTTGTCAAGCTTCCCATTCTTTCAAGCATCAAGACACGCCAATCAACCTCAAAACATGTTGTTCCACTTCCATCCAAATTCAATATTGATGCACTTGCTGTTGGTGGAGAGTTTGGGATATTTGAAGGAAGAACATTTGCTCTCATTCACCCCATTGTGTTGGGTGGTTTGTTCTTCTATACTCTATATGCTGGCTATTTGGGGTGGCAATGGCGCCGAGTTAGGACTATTCAAAATGATATTAATGAGCTCAAGAAACAACTCAAACCTGCACCGGTCGCCCCTGATGGTAAAGCACTTGAAACTTCACCGCCATCACCTGTTGAACTTCAAATCCAGAAACTTACTGAGGAGAGGAAAGAGCTTATCAAAGGTTCATACAGGGATAAACACTTTAATGCTGGATCCATACTTCTAGGATTTGGTGTCTTTGAGGCTGTTGGCATTACCGTCTTATGGGCACTGGCAGCAGCTCTAGTACCACCGATGCAGAAAGGCAGTGAAACAGCCAGAAATCTTCACATTGCTCTGAATACATTGAATGTTCTTCTCTTTGTGTGGCAGATTCCCACTGGACTTGATATTGTATGGAAAGTGTTTGAGTTCACAAAATGGCCTTGA

Protein sequence

>Msa0580890

MASTLSLVKLPILSSIKTRQSTSKHVVPLPSKFNIDALAVGGEFGIFEGRTFALIHPIVLGGLFFYTLYAGYLGWQWRRVRTIQNDINELKKQLKPAPVAPDGKALETSPPSPVELQIQKLTEERKELIKGSYRDKHFNAGSILLGFGVFEAVGITVLWALAAALVPPMQKGSETARNLHIALNTLNVLLFVWQIPTGLDIVWKVFEFTKWP*