AlfalfaGEDB | Msa0033190

M. sativa cultivar zhongmu-4 / Msa0033190

KEGG: -
GO: GO:0003674 GO:0003824 GO:0003993 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009765 GO:0009987 GO:0010206 GO:0015979 GO:0016020 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019538 GO:0019684 GO:0030091 GO:0031976 GO:0031977 GO:0031984 GO:0034357 GO:0042578 GO:0042651 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035 GO:0071704 GO:1901564
PFAM: PF04536.17

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0033190	sp\|Q9ZVL6\|U603_ARATH	60.767	339	72	4	1	332	1	285	1.50e-127	369

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000180	Msa0033190	0.807645	4.568761e-50	-8.615850e-47
Msa0000220	Msa0033190	0.824742	6.844708e-54	-8.615850e-47
Msa0000610	Msa0033190	0.876830	1.021810e-68	-8.615850e-47
Msa0000800	Msa0033190	-0.836991	6.762741e-57	-8.615850e-47
Msa0001040	Msa0033190	0.884874	1.320101e-71	-8.615850e-47
Msa0001420	Msa0033190	0.803161	3.978687e-49	-8.615850e-47
Msa0001510	Msa0033190	0.891549	3.587940e-74	-8.615850e-47
Msa0001540	Msa0033190	0.816746	4.716336e-52	-8.615850e-47
Msa0001550	Msa0033190	0.810628	1.048679e-50	-8.615850e-47
Msa0002110	Msa0033190	0.905332	4.802504e-80	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0033190	MtrunA17_Chr1g0191511	86.145	332	3	1	1	332	1	289	0.0	557

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0033190	AT1G54780.1	60.767	339	72	4	1	332	1	285	1.52e-128	369

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Find 88 sgRNAs with CRISPR-Local

Find 160 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGAAGGAGCAGTTACTGG+TGG	0.670414	1_1:-60530095	Msa0033190:CDS
AATAATCCAACAAACATATT+TGG	0.145319	1_1:+60528795	None:intergenic
ACCACATAGGCCTCTTTAGG+TGG	0.587301	1_1:+60530924	None:intergenic
ACCGAGGGACCACCAGGATC+TGG	0.448423	1_1:+60529120	None:intergenic
ACGTTTGTCGTCTTTAACCG+AGG	0.492907	1_1:+60529104	None:intergenic
ACTCAATTATAACATGAGCT+TGG	0.526873	1_1:+60528870	None:intergenic
ACTGTTTCAGAGAACCTTCC+AGG	0.376813	1_1:-60530029	Msa0033190:intron
AGAACAATGTTGTGCAACAG+AGG	0.624229	1_1:-60531288	Msa0033190:five_prime_UTR
AGAAGTGGAGAGAGAGAGTT+GGG	0.377846	1_1:+60531197	None:intergenic
AGAGAGAGTTGGGAGGAAAA+AGG	0.232772	1_1:+60531207	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
CATTACCACTAAGTAAAACT+GGG	+	chr1_1:60528956-60528975	None:intergenic	30.0%
ACAACTTAGTTAAGCTCATT+TGG	+	chr1_1:60529396-60529415	None:intergenic	30.0%
TTGAAACATAGCCTAGATAA+AGG	-	chr1_1:60529419-60529438	Msa0033190:CDS	30.0%
CATATGTTCATAAACTGTGA+AGG	-	chr1_1:60530127-60530146	Msa0033190:CDS	30.0%
ATGCACTGAGTATATAGTAA+AGG	-	chr1_1:60530185-60530204	Msa0033190:CDS	30.0%
ACTGAGTATATAGTAAAGGA+CGG	-	chr1_1:60530189-60530208	Msa0033190:CDS	30.0%
TCATCATGATCATTGATCAT+TGG	+	chr1_1:60530389-60530408	None:intergenic	30.0%
ATACAGCTACTAAATGGATA+GGG	+	chr1_1:60530488-60530507	None:intergenic	30.0%
TATACAGCTACTAAATGGAT+AGG	+	chr1_1:60530489-60530508	None:intergenic	30.0%
CAACATATACAGCTACTAAA+TGG	+	chr1_1:60530494-60530513	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1_1	gene	60528623	60531334	60528623	ID=Msa0033190;Name=Msa0033190
chr1_1	mRNA	60528623	60531334	60528623	ID=Msa0033190-mRNA-1;Parent=Msa0033190;Name=Msa0033190-mRNA-1;_AED=0.05;_eAED=0.05;_QI=97\|0.25\|0.6\|0.6\|1\|1\|5\|349\|332
chr1_1	exon	60528623	60529219	60528623	ID=Msa0033190-mRNA-1:exon:18998;Parent=Msa0033190-mRNA-1
chr1_1	exon	60529387	60529438	60529387	ID=Msa0033190-mRNA-1:exon:18997;Parent=Msa0033190-mRNA-1
chr1_1	exon	60529527	60529603	60529527	ID=Msa0033190-mRNA-1:exon:18996;Parent=Msa0033190-mRNA-1
chr1_1	exon	60530030	60530222	60530030	ID=Msa0033190-mRNA-1:exon:18995;Parent=Msa0033190-mRNA-1
chr1_1	exon	60530809	60531334	60530809	ID=Msa0033190-mRNA-1:exon:18994;Parent=Msa0033190-mRNA-1
chr1_1	five_prime_UTR	60531238	60531334	60531238	ID=Msa0033190-mRNA-1:five_prime_utr;Parent=Msa0033190-mRNA-1
chr1_1	CDS	60530809	60531237	60530809	ID=Msa0033190-mRNA-1:cds;Parent=Msa0033190-mRNA-1
chr1_1	CDS	60530030	60530222	60530030	ID=Msa0033190-mRNA-1:cds;Parent=Msa0033190-mRNA-1
chr1_1	CDS	60529527	60529603	60529527	ID=Msa0033190-mRNA-1:cds;Parent=Msa0033190-mRNA-1
chr1_1	CDS	60529387	60529438	60529387	ID=Msa0033190-mRNA-1:cds;Parent=Msa0033190-mRNA-1
chr1_1	CDS	60528972	60529219	60528972	ID=Msa0033190-mRNA-1:cds;Parent=Msa0033190-mRNA-1
chr1_1	three_prime_UTR	60528623	60528971	60528623	ID=Msa0033190-mRNA-1:three_prime_utr;Parent=Msa0033190-mRNA-1

Gene Sequence

>Msa0033190

ATGACAACCCTTTTTCCTCCCAACTCTCTCTCTCCACTTCTCAACCTCAAATCTTCACCTTCTCTCCAACCCAAATCAACCTCTCTCATTTCCTACAAACCCATTGTTTCTAATCTCAAAAAGACTCAAACTTTATCTCTAAAACCACCAACCCTTCCTTCATGCACAACCTTGCTCACTCATGCTCAACAGGGTCTTGCAGCTTTAGCTATCACTTTAGCATTGAATTTCAGCCCAGTTTTACTTAGTGGTAATGCATTGGCTTCTGAATTTGATGTGATTAATGAGCGTCCACCTAAAGAGGCCTATGTGGTTGATGATGCTGGAGTTCTTAGTAGAGTCACTAAGTCTGATTTGAAACGTTTGTTATCTGATTTGGAATCAAGGAAGAATTTTCATATCAATTTTATTACACTTAGAAAACTCACGAGTAAAGCTGATGCTTTTGAGTTTGCGGACCAAATTTTGGAGCGTTGGTATCCTTCTGTGGAAGAGGGTAATGACAAGGGTGTTGTGGTTCTTGTAACAAGTCAGAAAGAAGGAGCAGTTACTGGTGGACCTGCTTTTGTTCAAGCCGTAGGAGAAAATATCCTCGATGCTACTGTTTCAGAGAACCTTCCAGGGGCACTTTCAAGAAGCAAGATTGCAGACACTCCAATGATCAATGATCATGATGACCATAACGATAATGATGGACATGCTTATCCGCCTACATACTTCAGTTTAAACAAGGCAACGGATTTTCAGCAGGTATTGGCTACGGATGAGAAGTACAATGAAGCAATTTATAGCACTGCTAAACGACTAGTTGCTGCCATTGACGGACTTCCAGATCCTGGTGGTCCCTCGGTTAAAGACGACAAACGTGAGTCTAACTTCAAAACAAAGGAAGAGACAGAAGAAAAGCGTGGACAATTCTCTCTTGTAGTTGGAGGTTTGTTGGTTATTGCATTTGTTGTTCCTATGGTACAATACTATGCTTATGTAGCCAAAAAATAA

Protein sequence

>Msa0033190

MTTLFPPNSLSPLLNLKSSPSLQPKSTSLISYKPIVSNLKKTQTLSLKPPTLPSCTTLLTHAQQGLAALAITLALNFSPVLLSGNALASEFDVINERPPKEAYVVDDAGVLSRVTKSDLKRLLSDLESRKNFHINFITLRKLTSKADAFEFADQILERWYPSVEEGNDKGVVVLVTSQKEGAVTGGPAFVQAVGENILDATVSENLPGALSRSKIADTPMINDHDDHNDNDGHAYPPTYFSLNKATDFQQVLATDEKYNEAIYSTAKRLVAAIDGLPDPGGPSVKDDKRESNFKTKEETEEKRGQFSLVVGGLLVIAFVVPMVQYYAYVAKK*