AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0033190


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0033190 MtrunA17_Chr1g0191511 86.145 332 3 1 1 332 1 289 0.0 557
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0033190 AT1G54780.1 60.767 339 72 4 1 332 1 285 1.52e-128 369

Find 88 sgRNAs with CRISPR-Local

Find 160 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATAATCCAACAAACATATT+TGG 0.145319 1_1:+60528795 None:intergenic
GAAATTAAAGAGTGATAATT+TGG 0.178944 1_1:+60528916 None:intergenic
AGAGAGAGTTGGGAGGAAAA+AGG 0.232772 1_1:+60531207 None:intergenic
GAAACGTTTGTTATCTGATT+TGG 0.264813 1_1:-60530859 Msa0033190:CDS
GCATTACCACTAAGTAAAAC+TGG 0.283086 1_1:+60530981 None:intergenic
TGAGTTTGCGGACCAAATTT+TGG 0.287868 1_1:-60530183 Msa0033190:CDS
CTCATGTTCTGTCTTTGATT+TGG 0.290236 1_1:+60531309 None:intergenic
CTTGCTCACTCATGCTCAAC+AGG 0.301494 1_1:-60531045 Msa0033190:CDS
TATCAATTGTCAATACATAA+AGG 0.302146 1_1:-60528735 Msa0033190:three_prime_UTR
GATACCAACGCTCCAAAATT+TGG 0.302536 1_1:+60530171 None:intergenic
GAAATGAGAGAGGTTGATTT+GGG 0.321070 1_1:+60531146 None:intergenic
GGAAATGAGAGAGGTTGATT+TGG 0.327476 1_1:+60531145 None:intergenic
ATTAGAAACAATGGGTTTGT+AGG 0.342048 1_1:+60531124 None:intergenic
TCTTGTAGTTGGAGGTTTGT+TGG 0.348630 1_1:-60529028 Msa0033190:CDS
ATCAATTGTCAATACATAAA+GGG 0.365525 1_1:-60528734 Msa0033190:three_prime_UTR
ATAATCCAACAAACATATTT+GGG 0.369748 1_1:+60528796 None:intergenic
TAATTCCCAAATATGTTTGT+TGG 0.374420 1_1:-60528801 Msa0033190:three_prime_UTR
TCAACCACATAGGCCTCTTT+AGG 0.375166 1_1:+60530921 None:intergenic
ACTGTTTCAGAGAACCTTCC+AGG 0.376813 1_1:-60530029 Msa0033190:intron
AGAAGTGGAGAGAGAGAGTT+GGG 0.377846 1_1:+60531197 None:intergenic
CAGAAAGAAGGAGCAGTTAC+TGG 0.391425 1_1:-60530098 Msa0033190:CDS
GGAGAGAAGGTGAAGATTTG+AGG 0.395997 1_1:+60531171 None:intergenic
TGAGAGAGGTTGATTTGGGT+TGG 0.410728 1_1:+60531150 None:intergenic
CAATTCTCTCTTGTAGTTGG+AGG 0.420228 1_1:-60529036 Msa0033190:CDS
GTGCATGAAGGAAGGGTTGG+TGG 0.423912 1_1:+60531071 None:intergenic
TATTGCATTTGTTGTTCCTA+TGG 0.427254 1_1:-60529004 Msa0033190:CDS
CGACTAGTTGCTGCCATTGA+CGG 0.431818 1_1:-60529147 Msa0033190:CDS
GTTGATTTGGGTTGGAGAGA+AGG 0.438011 1_1:+60531158 None:intergenic
CATGTCCATCATTATCGTTA+TGG 0.447241 1_1:+60529526 None:intergenic
ACCGAGGGACCACCAGGATC+TGG 0.448423 1_1:+60529120 None:intergenic
GGACAATTCTCTCTTGTAGT+TGG 0.450595 1_1:-60529039 Msa0033190:CDS
GAGAAGTGGAGAGAGAGAGT+TGG 0.457937 1_1:+60531196 None:intergenic
TGAGGAAGATGAGGGAGGGT+TGG 0.476347 1_1:+60531237 None:intergenic
TCATCATGATCATTGATCAT+TGG 0.480288 1_1:+60529549 None:intergenic
ACGTTTGTCGTCTTTAACCG+AGG 0.492907 1_1:+60529104 None:intergenic
GCCTATGTGGTTGATGATGC+TGG 0.497501 1_1:-60530912 Msa0033190:CDS
TTTACTTAGTGGTAATGCAT+TGG 0.498407 1_1:-60530976 Msa0033190:CDS
TAATGAGCGTCCACCTAAAG+AGG 0.498637 1_1:-60530934 Msa0033190:CDS
TCCAGATCCTGGTGGTCCCT+CGG 0.499224 1_1:-60529121 Msa0033190:CDS
TTGGTATCCTTCTGTGGAAG+AGG 0.505336 1_1:-60530156 Msa0033190:CDS
TTTGTATGCAGTATTGGCTA+CGG 0.505886 1_1:-60529208 Msa0033190:intron
GATGACCATAACGATAATGA+TGG 0.508252 1_1:-60529531 Msa0033190:CDS
GATGAGGGAGGGTTGGAATG+AGG 0.511085 1_1:+60531244 None:intergenic
GAAGATTTGAGGTTGAGAAG+TGG 0.512998 1_1:+60531182 None:intergenic
TTGTTTAAACTGAAGTATGT+AGG 0.517023 1_1:+60529407 None:intergenic
TGTTATCTGATTTGGAATCA+AGG 0.519003 1_1:-60530851 Msa0033190:CDS
GGGTTGTCATGAGGAAGATG+AGG 0.520868 1_1:+60531228 None:intergenic
ACTCAATTATAACATGAGCT+TGG 0.526873 1_1:+60528870 None:intergenic
TCTTTAACCGAGGGACCACC+AGG 0.532906 1_1:+60529114 None:intergenic
ATTGACGGACTTCCAGATCC+TGG 0.535082 1_1:-60529132 Msa0033190:CDS
AGGATCTGGAAGTCCGTCAA+TGG 0.539431 1_1:+60529134 None:intergenic
TAAGCATAGTATTGTACCAT+AGG 0.544493 1_1:+60528988 None:intergenic
TCATTACCCTCTTCCACAGA+AGG 0.547276 1_1:+60530149 None:intergenic
GGTTGTCATGAGGAAGATGA+GGG 0.547700 1_1:+60531229 None:intergenic
CATTACCACTAAGTAAAACT+GGG 0.556805 1_1:+60530982 None:intergenic
CCTACGGCTTGAACAAAAGC+AGG 0.557352 1_1:+60530071 None:intergenic
GCAAGGTTGTGCATGAAGGA+AGG 0.559545 1_1:+60531063 None:intergenic
TGTCATGAGGAAGATGAGGG+AGG 0.561679 1_1:+60531232 None:intergenic
CTTGTAACAAGTCAGAAAGA+AGG 0.568574 1_1:-60530110 Msa0033190:CDS
CTTCAGTTTAAACAAGGCAA+CGG 0.568788 1_1:-60529399 Msa0033190:CDS
GTCATGAGGAAGATGAGGGA+GGG 0.568806 1_1:+60531233 None:intergenic
GGGTAATGACAAGGGTGTTG+TGG 0.576837 1_1:-60530135 Msa0033190:CDS
TATTACACTTAGAAAACTCA+CGG 0.578085 1_1:-60530808 Msa0033190:intron
ACCACATAGGCCTCTTTAGG+TGG 0.587301 1_1:+60530924 None:intergenic
GTTGTGCATGAAGGAAGGGT+TGG 0.597066 1_1:+60531068 None:intergenic
CGTTTGTCGTCTTTAACCGA+GGG 0.605535 1_1:+60529105 None:intergenic
GGAGCGTTGGTATCCTTCTG+TGG 0.606556 1_1:-60530162 Msa0033190:CDS
GAAGAGACAGAAGAAAAGCG+TGG 0.608619 1_1:-60529060 Msa0033190:CDS
GGGTTTGTAGGAAATGAGAG+AGG 0.610811 1_1:+60531136 None:intergenic
TCCACCTAAAGAGGCCTATG+TGG 0.614674 1_1:-60530925 Msa0033190:CDS
GGGAGGGTTGGAATGAGGAA+AGG 0.615602 1_1:+60531249 None:intergenic
TGGTATCCTTCTGTGGAAGA+GGG 0.615864 1_1:-60530155 Msa0033190:CDS
AGTGGAGAGAGAGAGTTGGG+AGG 0.617964 1_1:+60531200 None:intergenic
AGAACAATGTTGTGCAACAG+AGG 0.624229 1_1:-60531288 Msa0033190:five_prime_UTR
GTGAGCAAGGTTGTGCATGA+AGG 0.627468 1_1:+60531059 None:intergenic
TGAGTCTAACTTCAAAACAA+AGG 0.628354 1_1:-60529082 Msa0033190:CDS
TACATACTTCAGTTTAAACA+AGG 0.635201 1_1:-60529405 Msa0033190:CDS
CAAGGTTGTGCATGAAGGAA+GGG 0.640898 1_1:+60531064 None:intergenic
TGTGGAAGAGGGTAATGACA+AGG 0.647686 1_1:-60530144 Msa0033190:CDS
CTGTTGAGCATGAGTGAGCA+AGG 0.649149 1_1:+60531046 None:intergenic
GCCATTAGGAAGTACCTGGA+AGG 0.650563 1_1:+60530015 None:intergenic
TTGCTCACTCATGCTCAACA+GGG 0.667046 1_1:-60531044 Msa0033190:CDS
AAAGAAGGAGCAGTTACTGG+TGG 0.670414 1_1:-60530095 Msa0033190:CDS
TTTAAACTGAAGTATGTAGG+CGG 0.672394 1_1:+60529410 None:intergenic
TCCAGCATCATCAACCACAT+AGG 0.674153 1_1:+60530911 None:intergenic
GTGGAAGAGGGTAATGACAA+GGG 0.686921 1_1:-60530143 Msa0033190:CDS
GACGGACTTCCAGATCCTGG+TGG 0.696278 1_1:-60529129 Msa0033190:CDS
TCTCTGAAACAGTAGCATCG+AGG 0.748886 1_1:+60530039 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAATAAAAATGTTGAATTTT+TGG - chr1_1:60529688-60529707 Msa0033190:intron 10.0%
!!! TATATTTGTTGTATTGTAAT+AGG - chr1_1:60529584-60529603 Msa0033190:CDS 15.0%
!!! ATATCCATTATCTTATTTTT+TGG + chr1_1:60530978-60530997 None:intergenic 15.0%
!!! TTTTTGAGATTAGAAACAAT+GGG + chr1_1:60528822-60528841 None:intergenic 20.0%
!!! ATTTTCATATAAGCTATAAG+CGG + chr1_1:60529303-60529322 None:intergenic 20.0%
!! TTTCTTGAAAAATAAATGCA+AGG - chr1_1:60530237-60530256 Msa0033190:intron 20.0%
!! AACTCTTCTTAACAAAAAAA+GGG + chr1_1:60530316-60530335 None:intergenic 20.0%
!! GAAATTAAAGAGTGATAATT+TGG + chr1_1:60531022-60531041 None:intergenic 20.0%
!! ATAATCCAACAAACATATTT+GGG + chr1_1:60531142-60531161 None:intergenic 20.0%
!! AATAATCCAACAAACATATT+TGG + chr1_1:60531143-60531162 None:intergenic 20.0%
!! TATCAATTGTCAATACATAA+AGG - chr1_1:60531200-60531219 Msa0033190:CDS 20.0%
!! ATCAATTGTCAATACATAAA+GGG - chr1_1:60531201-60531220 Msa0033190:CDS 20.0%
!!! ATTCTAATCTAGACTATTTT+CGG + chr1_1:60531312-60531331 None:intergenic 20.0%
!!! CTTTTTGAGATTAGAAACAA+TGG + chr1_1:60528823-60528842 None:intergenic 25.0%
! TATTACACTTAGAAAACTCA+CGG - chr1_1:60529127-60529146 Msa0033190:CDS 25.0%
! CATAAGCAATATATGATAAG+CGG - chr1_1:60529365-60529384 Msa0033190:intron 25.0%
!!! TGAAGTTTTTTCCTTTATCT+AGG + chr1_1:60529433-60529452 None:intergenic 25.0%
! GTTGTATTGTAATAGGAAAA+CGG - chr1_1:60529591-60529610 Msa0033190:intron 25.0%
! TCATCAATAAACTGTTAGAA+TGG - chr1_1:60529661-60529680 Msa0033190:intron 25.0%
!!! ATGTTGAATTTTTGGATTTG+TGG - chr1_1:60529696-60529715 Msa0033190:intron 25.0%
!!! ATTGTTTTTCTGTAGCATAT+TGG - chr1_1:60529962-60529981 Msa0033190:intron 25.0%
!!! TTGTTTTTCTGTAGCATATT+GGG - chr1_1:60529963-60529982 Msa0033190:intron 25.0%
! TGATTATTTATGTCTGTGAA+AGG - chr1_1:60530029-60530048 Msa0033190:intron 25.0%
!!! TTTTTTCTCACCAACAAATA+TGG - chr1_1:60530083-60530102 Msa0033190:CDS 25.0%
!! AAGCAACTTTGTTATGAATA+TGG - chr1_1:60530150-60530169 Msa0033190:CDS 25.0%
! CAACTCTTCTTAACAAAAAA+AGG + chr1_1:60530317-60530336 None:intergenic 25.0%
! TTGTTTAAACTGAAGTATGT+AGG + chr1_1:60530531-60530550 None:intergenic 25.0%
! TACATACTTCAGTTTAAACA+AGG - chr1_1:60530530-60530549 Msa0033190:intron 25.0%
! GTAGCCAAAAAATAAGATAA+TGG - chr1_1:60530971-60530990 Msa0033190:CDS 25.0%
!!! CAAATAAGATCAGAGTTTTT+TGG - chr1_1:60531101-60531120 Msa0033190:CDS 25.0%
! TAATTCCCAAATATGTTTGT+TGG - chr1_1:60531134-60531153 Msa0033190:CDS 25.0%
! ATTAGAAACAATGGGTTTGT+AGG + chr1_1:60528814-60528833 None:intergenic 30.0%
CATTACCACTAAGTAAAACT+GGG + chr1_1:60528956-60528975 None:intergenic 30.0%
! TTTACTTAGTGGTAATGCAT+TGG - chr1_1:60528959-60528978 Msa0033190:exon 30.0%
!! GAAACGTTTGTTATCTGATT+TGG - chr1_1:60529076-60529095 Msa0033190:CDS 30.0%
!! TGTTATCTGATTTGGAATCA+AGG - chr1_1:60529084-60529103 Msa0033190:CDS 30.0%
ACAACTTAGTTAAGCTCATT+TGG + chr1_1:60529396-60529415 None:intergenic 30.0%
TTGAAACATAGCCTAGATAA+AGG - chr1_1:60529419-60529438 Msa0033190:CDS 30.0%
!! TGAATTTTTGGATTTGTGGT+TGG - chr1_1:60529700-60529719 Msa0033190:intron 30.0%
! TGTTTTTCTGTAGCATATTG+GGG - chr1_1:60529964-60529983 Msa0033190:intron 30.0%
CATATGTTCATAAACTGTGA+AGG - chr1_1:60530127-60530146 Msa0033190:CDS 30.0%
ATGCACTGAGTATATAGTAA+AGG - chr1_1:60530185-60530204 Msa0033190:CDS 30.0%
ACTGAGTATATAGTAAAGGA+CGG - chr1_1:60530189-60530208 Msa0033190:CDS 30.0%
TCATCATGATCATTGATCAT+TGG + chr1_1:60530389-60530408 None:intergenic 30.0%
ATACAGCTACTAAATGGATA+GGG + chr1_1:60530488-60530507 None:intergenic 30.0%
TATACAGCTACTAAATGGAT+AGG + chr1_1:60530489-60530508 None:intergenic 30.0%
CAACATATACAGCTACTAAA+TGG + chr1_1:60530494-60530513 None:intergenic 30.0%
TTTAAACTGAAGTATGTAGG+CGG + chr1_1:60530528-60530547 None:intergenic 30.0%
!! TAGCAGTTGTGATCATTTTT+AGG - chr1_1:60530674-60530693 Msa0033190:intron 30.0%
!! AGCAGTTGTGATCATTTTTA+GGG - chr1_1:60530675-60530694 Msa0033190:intron 30.0%
TGAGTCTAACTTCAAAACAA+AGG - chr1_1:60530853-60530872 Msa0033190:CDS 30.0%
!! TATTGCATTTGTTGTTCCTA+TGG - chr1_1:60530931-60530950 Msa0033190:CDS 30.0%
TAAGCATAGTATTGTACCAT+AGG + chr1_1:60530950-60530969 None:intergenic 30.0%
ACTCAATTATAACATGAGCT+TGG + chr1_1:60531068-60531087 None:intergenic 30.0%
CTCATGTTCTGTCTTTGATT+TGG + chr1_1:60528629-60528648 None:intergenic 35.0%
! GAAATGAGAGAGGTTGATTT+GGG + chr1_1:60528792-60528811 None:intergenic 35.0%
GCATTACCACTAAGTAAAAC+TGG + chr1_1:60528957-60528976 None:intergenic 35.0%
! CTTATTTGAGCTTGTTTACC+TGG - chr1_1:60529204-60529223 Msa0033190:intron 35.0%
TACCTGGATAAAAGAGCTTA+TGG - chr1_1:60529220-60529239 Msa0033190:intron 35.0%
! TTCCATAAGCTCTTTTATCC+AGG + chr1_1:60529225-60529244 None:intergenic 35.0%
GTTTATGACATGTCAATGAG+CGG - chr1_1:60529247-60529266 Msa0033190:intron 35.0%
CTTGTAACAAGTCAGAAAGA+AGG - chr1_1:60529825-60529844 Msa0033190:intron 35.0%
! ATCGAGGATATTTTCTCCTA+CGG + chr1_1:60529883-60529902 None:intergenic 35.0%
AAGGATTTACAAGACTGTCT+TGG - chr1_1:60530048-60530067 Msa0033190:CDS 35.0%
TTCACACTTGCCATATTTGT+TGG + chr1_1:60530096-60530115 None:intergenic 35.0%
GTAAAGGACGGATGATAATT+TGG - chr1_1:60530201-60530220 Msa0033190:CDS 35.0%
!! TGAATTGTTTTGTCAGCATG+TGG - chr1_1:60530272-60530291 Msa0033190:intron 35.0%
!! GAATTGTTTTGTCAGCATGT+GGG - chr1_1:60530273-60530292 Msa0033190:intron 35.0%
AGTTGAGTTTGTGCTTTATC+AGG - chr1_1:60530332-60530351 Msa0033190:intron 35.0%
GTTGAGTTTGTGCTTTATCA+GGG - chr1_1:60530333-60530352 Msa0033190:intron 35.0%
TTGAGTTTGTGCTTTATCAG+GGG - chr1_1:60530334-60530353 Msa0033190:intron 35.0%
GATGACCATAACGATAATGA+TGG - chr1_1:60530404-60530423 Msa0033190:intron 35.0%
CATGTCCATCATTATCGTTA+TGG + chr1_1:60530412-60530431 None:intergenic 35.0%
!!! ATCCCTTTTTAGCTAGCATA+CGG - chr1_1:60530461-60530480 Msa0033190:intron 35.0%
AGTAGCTGTATATGTTGTCA+AGG - chr1_1:60530497-60530516 Msa0033190:intron 35.0%
CTTCAGTTTAAACAAGGCAA+CGG - chr1_1:60530536-60530555 Msa0033190:intron 35.0%
GTAACTTCAGAAGACATACA+TGG + chr1_1:60530644-60530663 None:intergenic 35.0%
!! GCAGTTGTGATCATTTTTAG+GGG - chr1_1:60530676-60530695 Msa0033190:intron 35.0%
TGCATACAAAAACCAGACAA+TGG + chr1_1:60530717-60530736 None:intergenic 35.0%
!! CTGGTTTTTGTATGCAGTAT+TGG - chr1_1:60530721-60530740 Msa0033190:intron 35.0%
!! TTTGTATGCAGTATTGGCTA+CGG - chr1_1:60530727-60530746 Msa0033190:intron 35.0%
TGCATCAAGTGCATAAAAAC+TGG + chr1_1:60531174-60531193 None:intergenic 35.0%
AGAACAATGTTGTGCAACAG+AGG - chr1_1:60528647-60528666 Msa0033190:three_prime_UTR 40.0%
! GAAGATTTGAGGTTGAGAAG+TGG + chr1_1:60528756-60528775 None:intergenic 40.0%
! GGAAATGAGAGAGGTTGATT+TGG + chr1_1:60528793-60528812 None:intergenic 40.0%
! TTCAGCCCAGTTTTACTTAG+TGG - chr1_1:60528948-60528967 Msa0033190:three_prime_UTR 40.0%
!!! AGCTGATGCTTTTGAGTTTG+CGG - chr1_1:60529740-60529759 Msa0033190:intron 40.0%
! TGAGTTTGCGGACCAAATTT+TGG - chr1_1:60529752-60529771 Msa0033190:intron 40.0%
GATACCAACGCTCCAAAATT+TGG + chr1_1:60529767-60529786 None:intergenic 40.0%
!! TTCCTAATGGCTAGTGGATT+TGG - chr1_1:60529932-60529951 Msa0033190:intron 40.0%
ATCCAAATCCACTAGCCATT+AGG + chr1_1:60529937-60529956 None:intergenic 40.0%
GACCGTATGCTAGCTAAAAA+GGG + chr1_1:60530466-60530485 None:intergenic 40.0%
TTTCAGCAGGGTGATAAACT+AGG - chr1_1:60530561-60530580 Msa0033190:intron 40.0%
TTCAGCAGGGTGATAAACTA+GGG - chr1_1:60530562-60530581 Msa0033190:intron 40.0%
AACACACTACTACCATTGTC+TGG - chr1_1:60530702-60530721 Msa0033190:intron 40.0%
GGACAATTCTCTCTTGTAGT+TGG - chr1_1:60530896-60530915 Msa0033190:CDS 40.0%
CAATTCTCTCTTGTAGTTGG+AGG - chr1_1:60530899-60530918 Msa0033190:CDS 40.0%
TCTTGTAGTTGGAGGTTTGT+TGG - chr1_1:60530907-60530926 Msa0033190:CDS 40.0%
GGTTGTCATGAGGAAGATGA+GGG + chr1_1:60528709-60528728 None:intergenic 45.0%
GAGGAAAAAGGGTTGTCATG+AGG + chr1_1:60528719-60528738 None:intergenic 45.0%
GAGAGAGTTGGGAGGAAAAA+GGG + chr1_1:60528730-60528749 None:intergenic 45.0%
AGAGAGAGTTGGGAGGAAAA+AGG + chr1_1:60528731-60528750 None:intergenic 45.0%
AGAAGTGGAGAGAGAGAGTT+GGG + chr1_1:60528741-60528760 None:intergenic 45.0%
GGAGAGAAGGTGAAGATTTG+AGG + chr1_1:60528767-60528786 None:intergenic 45.0%
!! GTTGATTTGGGTTGGAGAGA+AGG + chr1_1:60528780-60528799 None:intergenic 45.0%
!! TGAGAGAGGTTGATTTGGGT+TGG + chr1_1:60528788-60528807 None:intergenic 45.0%
GGGTTTGTAGGAAATGAGAG+AGG + chr1_1:60528802-60528821 None:intergenic 45.0%
CAAGGTTGTGCATGAAGGAA+GGG + chr1_1:60528874-60528893 None:intergenic 45.0%
TTGCTCACTCATGCTCAACA+GGG - chr1_1:60528891-60528910 Msa0033190:three_prime_UTR 45.0%
TAATGAGCGTCCACCTAAAG+AGG - chr1_1:60529001-60529020 Msa0033190:CDS 45.0%
TCAACCACATAGGCCTCTTT+AGG + chr1_1:60529017-60529036 None:intergenic 45.0%
TCCAGCATCATCAACCACAT+AGG + chr1_1:60529027-60529046 None:intergenic 45.0%
TTGGTATCCTTCTGTGGAAG+AGG - chr1_1:60529779-60529798 Msa0033190:intron 45.0%
TGGTATCCTTCTGTGGAAGA+GGG - chr1_1:60529780-60529799 Msa0033190:intron 45.0%
TCATTACCCTCTTCCACAGA+AGG + chr1_1:60529789-60529808 None:intergenic 45.0%
TGTGGAAGAGGGTAATGACA+AGG - chr1_1:60529791-60529810 Msa0033190:intron 45.0%
GTGGAAGAGGGTAATGACAA+GGG - chr1_1:60529792-60529811 Msa0033190:intron 45.0%
CAGAAAGAAGGAGCAGTTAC+TGG - chr1_1:60529837-60529856 Msa0033190:intron 45.0%
AAAGAAGGAGCAGTTACTGG+TGG - chr1_1:60529840-60529859 Msa0033190:intron 45.0%
!! TCTCTGAAACAGTAGCATCG+AGG + chr1_1:60529899-60529918 None:intergenic 45.0%
ACTGTTTCAGAGAACCTTCC+AGG - chr1_1:60529906-60529925 Msa0033190:intron 45.0%
ACCTTCCAGGTACTTCCTAA+TGG - chr1_1:60529919-60529938 Msa0033190:intron 45.0%
!! ACTAGCCATTAGGAAGTACC+TGG + chr1_1:60529927-60529946 None:intergenic 45.0%
AGGTACTTCCTAATGGCTAG+TGG - chr1_1:60529926-60529945 Msa0033190:intron 45.0%
GGACCGTATGCTAGCTAAAA+AGG + chr1_1:60530467-60530486 None:intergenic 45.0%
!! AAGGCAACGGATTTTCAGCA+GGG - chr1_1:60530549-60530568 Msa0033190:intron 45.0%
CGTTTGTCGTCTTTAACCGA+GGG + chr1_1:60530833-60530852 None:intergenic 45.0%
ACGTTTGTCGTCTTTAACCG+AGG + chr1_1:60530834-60530853 None:intergenic 45.0%
GAAGAGACAGAAGAAAAGCG+TGG - chr1_1:60530875-60530894 Msa0033190:CDS 45.0%
GTCATGAGGAAGATGAGGGA+GGG + chr1_1:60528705-60528724 None:intergenic 50.0%
TGTCATGAGGAAGATGAGGG+AGG + chr1_1:60528706-60528725 None:intergenic 50.0%
GGGTTGTCATGAGGAAGATG+AGG + chr1_1:60528710-60528729 None:intergenic 50.0%
GAGAAGTGGAGAGAGAGAGT+TGG + chr1_1:60528742-60528761 None:intergenic 50.0%
GTTGTGCATGAAGGAAGGGT+TGG + chr1_1:60528870-60528889 None:intergenic 50.0%
GCAAGGTTGTGCATGAAGGA+AGG + chr1_1:60528875-60528894 None:intergenic 50.0%
GTGAGCAAGGTTGTGCATGA+AGG + chr1_1:60528879-60528898 None:intergenic 50.0%
CTGTTGAGCATGAGTGAGCA+AGG + chr1_1:60528892-60528911 None:intergenic 50.0%
CTTGCTCACTCATGCTCAAC+AGG - chr1_1:60528890-60528909 Msa0033190:three_prime_UTR 50.0%
TCCACCTAAAGAGGCCTATG+TGG - chr1_1:60529010-60529029 Msa0033190:CDS 50.0%
ACCACATAGGCCTCTTTAGG+TGG + chr1_1:60529014-60529033 None:intergenic 50.0%
!! GCCTATGTGGTTGATGATGC+TGG - chr1_1:60529023-60529042 Msa0033190:CDS 50.0%
!!! CGGACCAAATTTTGGAGCGT+TGG - chr1_1:60529760-60529779 Msa0033190:intron 50.0%
!! GGGTAATGACAAGGGTGTTG+TGG - chr1_1:60529800-60529819 Msa0033190:intron 50.0%
CCTACGGCTTGAACAAAAGC+AGG + chr1_1:60529867-60529886 None:intergenic 50.0%
!! CCTGCTTTTGTTCAAGCCGT+AGG - chr1_1:60529864-60529883 Msa0033190:intron 50.0%
!! GCCATTAGGAAGTACCTGGA+AGG + chr1_1:60529923-60529942 None:intergenic 50.0%
!! CAAGGCAACGGATTTTCAGC+AGG - chr1_1:60530548-60530567 Msa0033190:intron 50.0%
! CGACTAGTTGCTGCCATTGA+CGG - chr1_1:60530788-60530807 Msa0033190:intron 50.0%
AGGATCTGGAAGTCCGTCAA+TGG + chr1_1:60530804-60530823 None:intergenic 50.0%
!! ATTGACGGACTTCCAGATCC+TGG - chr1_1:60530803-60530822 Msa0033190:intron 50.0%
GGGAGGGTTGGAATGAGGAA+AGG + chr1_1:60528689-60528708 None:intergenic 55.0%
GATGAGGGAGGGTTGGAATG+AGG + chr1_1:60528694-60528713 None:intergenic 55.0%
TGAGGAAGATGAGGGAGGGT+TGG + chr1_1:60528701-60528720 None:intergenic 55.0%
AGTGGAGAGAGAGAGTTGGG+AGG + chr1_1:60528738-60528757 None:intergenic 55.0%
GTGCATGAAGGAAGGGTTGG+TGG + chr1_1:60528867-60528886 None:intergenic 55.0%
!! GGAGCGTTGGTATCCTTCTG+TGG - chr1_1:60529773-60529792 Msa0033190:intron 55.0%
TCTTTAACCGAGGGACCACC+AGG + chr1_1:60530824-60530843 None:intergenic 55.0%
! GACGGACTTCCAGATCCTGG+TGG - chr1_1:60530806-60530825 Msa0033190:intron 60.0%
TCCAGATCCTGGTGGTCCCT+CGG - chr1_1:60530814-60530833 Msa0033190:CDS 60.0%
ACCGAGGGACCACCAGGATC+TGG + chr1_1:60530818-60530837 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 60528623 60531334 60528623 ID=Msa0033190;Name=Msa0033190
chr1_1 mRNA 60528623 60531334 60528623 ID=Msa0033190-mRNA-1;Parent=Msa0033190;Name=Msa0033190-mRNA-1;_AED=0.05;_eAED=0.05;_QI=97|0.25|0.6|0.6|1|1|5|349|332
chr1_1 exon 60528623 60529219 60528623 ID=Msa0033190-mRNA-1:exon:18998;Parent=Msa0033190-mRNA-1
chr1_1 exon 60529387 60529438 60529387 ID=Msa0033190-mRNA-1:exon:18997;Parent=Msa0033190-mRNA-1
chr1_1 exon 60529527 60529603 60529527 ID=Msa0033190-mRNA-1:exon:18996;Parent=Msa0033190-mRNA-1
chr1_1 exon 60530030 60530222 60530030 ID=Msa0033190-mRNA-1:exon:18995;Parent=Msa0033190-mRNA-1
chr1_1 exon 60530809 60531334 60530809 ID=Msa0033190-mRNA-1:exon:18994;Parent=Msa0033190-mRNA-1
chr1_1 five_prime_UTR 60531238 60531334 60531238 ID=Msa0033190-mRNA-1:five_prime_utr;Parent=Msa0033190-mRNA-1
chr1_1 CDS 60530809 60531237 60530809 ID=Msa0033190-mRNA-1:cds;Parent=Msa0033190-mRNA-1
chr1_1 CDS 60530030 60530222 60530030 ID=Msa0033190-mRNA-1:cds;Parent=Msa0033190-mRNA-1
chr1_1 CDS 60529527 60529603 60529527 ID=Msa0033190-mRNA-1:cds;Parent=Msa0033190-mRNA-1
chr1_1 CDS 60529387 60529438 60529387 ID=Msa0033190-mRNA-1:cds;Parent=Msa0033190-mRNA-1
chr1_1 CDS 60528972 60529219 60528972 ID=Msa0033190-mRNA-1:cds;Parent=Msa0033190-mRNA-1
chr1_1 three_prime_UTR 60528623 60528971 60528623 ID=Msa0033190-mRNA-1:three_prime_utr;Parent=Msa0033190-mRNA-1
Gene Sequence

>Msa0033190

ATGACAACCCTTTTTCCTCCCAACTCTCTCTCTCCACTTCTCAACCTCAAATCTTCACCTTCTCTCCAACCCAAATCAACCTCTCTCATTTCCTACAAACCCATTGTTTCTAATCTCAAAAAGACTCAAACTTTATCTCTAAAACCACCAACCCTTCCTTCATGCACAACCTTGCTCACTCATGCTCAACAGGGTCTTGCAGCTTTAGCTATCACTTTAGCATTGAATTTCAGCCCAGTTTTACTTAGTGGTAATGCATTGGCTTCTGAATTTGATGTGATTAATGAGCGTCCACCTAAAGAGGCCTATGTGGTTGATGATGCTGGAGTTCTTAGTAGAGTCACTAAGTCTGATTTGAAACGTTTGTTATCTGATTTGGAATCAAGGAAGAATTTTCATATCAATTTTATTACACTTAGAAAACTCACGAGTAAAGCTGATGCTTTTGAGTTTGCGGACCAAATTTTGGAGCGTTGGTATCCTTCTGTGGAAGAGGGTAATGACAAGGGTGTTGTGGTTCTTGTAACAAGTCAGAAAGAAGGAGCAGTTACTGGTGGACCTGCTTTTGTTCAAGCCGTAGGAGAAAATATCCTCGATGCTACTGTTTCAGAGAACCTTCCAGGGGCACTTTCAAGAAGCAAGATTGCAGACACTCCAATGATCAATGATCATGATGACCATAACGATAATGATGGACATGCTTATCCGCCTACATACTTCAGTTTAAACAAGGCAACGGATTTTCAGCAGGTATTGGCTACGGATGAGAAGTACAATGAAGCAATTTATAGCACTGCTAAACGACTAGTTGCTGCCATTGACGGACTTCCAGATCCTGGTGGTCCCTCGGTTAAAGACGACAAACGTGAGTCTAACTTCAAAACAAAGGAAGAGACAGAAGAAAAGCGTGGACAATTCTCTCTTGTAGTTGGAGGTTTGTTGGTTATTGCATTTGTTGTTCCTATGGTACAATACTATGCTTATGTAGCCAAAAAATAA

Protein sequence

>Msa0033190

MTTLFPPNSLSPLLNLKSSPSLQPKSTSLISYKPIVSNLKKTQTLSLKPPTLPSCTTLLTHAQQGLAALAITLALNFSPVLLSGNALASEFDVINERPPKEAYVVDDAGVLSRVTKSDLKRLLSDLESRKNFHINFITLRKLTSKADAFEFADQILERWYPSVEEGNDKGVVVLVTSQKEGAVTGGPAFVQAVGENILDATVSENLPGALSRSKIADTPMINDHDDHNDNDGHAYPPTYFSLNKATDFQQVLATDEKYNEAIYSTAKRLVAAIDGLPDPGGPSVKDDKRESNFKTKEETEEKRGQFSLVVGGLLVIAFVVPMVQYYAYVAKK*