AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1459680


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1459680 MtrunA17_Chr1g0191511 86.145 332 3 1 1 332 1 289 0.0 557
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1459680 AT1G54780.1 60.767 339 72 4 1 332 1 285 1.52e-128 369

Find 88 sgRNAs with CRISPR-Local

Find 161 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATAATCCAACAAACATATT+TGG 0.145319 tig0040397:+15478 None:intergenic
GAAATTAAAGAGTGATAATT+TGG 0.178944 tig0040397:+15599 None:intergenic
AGAGAGAGTTGGGAGGAAAA+AGG 0.232772 tig0040397:+17890 None:intergenic
GAAACGTTTGTTATCTGATT+TGG 0.264813 tig0040397:-17542 Msa1459680:CDS
GCATTACCACTAAGTAAAAC+TGG 0.283086 tig0040397:+17664 None:intergenic
TGAGTTTGCGGACCAAATTT+TGG 0.287868 tig0040397:-16866 Msa1459680:CDS
CTCATGTTCTGTCTTTGATT+TGG 0.290236 tig0040397:+17992 None:intergenic
CTTGCTCACTCATGCTCAAC+AGG 0.301494 tig0040397:-17728 Msa1459680:CDS
TATCAATTGTCAATACATAA+AGG 0.302146 tig0040397:-15418 Msa1459680:three_prime_UTR
GATACCAACGCTCCAAAATT+TGG 0.302536 tig0040397:+16854 None:intergenic
GAAATGAGAGAGGTTGATTT+GGG 0.321070 tig0040397:+17829 None:intergenic
GGAAATGAGAGAGGTTGATT+TGG 0.327476 tig0040397:+17828 None:intergenic
ATTAGAAACAATGGGTTTGT+AGG 0.342048 tig0040397:+17807 None:intergenic
TCTTGTAGTTGGAGGTTTGT+TGG 0.348630 tig0040397:-15711 Msa1459680:CDS
ATCAATTGTCAATACATAAA+GGG 0.365525 tig0040397:-15417 Msa1459680:three_prime_UTR
ATAATCCAACAAACATATTT+GGG 0.369748 tig0040397:+15479 None:intergenic
TAATTCCCAAATATGTTTGT+TGG 0.374420 tig0040397:-15484 Msa1459680:three_prime_UTR
TCAACCACATAGGCCTCTTT+AGG 0.375166 tig0040397:+17604 None:intergenic
ACTGTTTCAGAGAACCTTCC+AGG 0.376813 tig0040397:-16712 Msa1459680:intron
AGAAGTGGAGAGAGAGAGTT+GGG 0.377846 tig0040397:+17880 None:intergenic
CAGAAAGAAGGAGCAGTTAC+TGG 0.391425 tig0040397:-16781 Msa1459680:CDS
GGAGAGAAGGTGAAGATTTG+AGG 0.395997 tig0040397:+17854 None:intergenic
TGAGAGAGGTTGATTTGGGT+TGG 0.410728 tig0040397:+17833 None:intergenic
CAATTCTCTCTTGTAGTTGG+AGG 0.420228 tig0040397:-15719 Msa1459680:CDS
GTGCATGAAGGAAGGGTTGG+TGG 0.423912 tig0040397:+17754 None:intergenic
TATTGCATTTGTTGTTCCTA+TGG 0.427254 tig0040397:-15687 Msa1459680:CDS
CGACTAGTTGCTGCCATTGA+CGG 0.431818 tig0040397:-15830 Msa1459680:CDS
GTTGATTTGGGTTGGAGAGA+AGG 0.438011 tig0040397:+17841 None:intergenic
CATGTCCATCATTATCGTTA+TGG 0.447241 tig0040397:+16209 None:intergenic
ACCGAGGGACCACCAGGATC+TGG 0.448423 tig0040397:+15803 None:intergenic
GGACAATTCTCTCTTGTAGT+TGG 0.450595 tig0040397:-15722 Msa1459680:CDS
GAGAAGTGGAGAGAGAGAGT+TGG 0.457937 tig0040397:+17879 None:intergenic
TGAGGAAGATGAGGGAGGGT+TGG 0.476347 tig0040397:+17920 None:intergenic
TCATCATGATCATTGATCAT+TGG 0.480288 tig0040397:+16232 None:intergenic
GATGAGGGAGGGTTGGATTG+AGG 0.480814 tig0040397:+17927 None:intergenic
ACGTTTGTCGTCTTTAACCG+AGG 0.492907 tig0040397:+15787 None:intergenic
GCCTATGTGGTTGATGATGC+TGG 0.497501 tig0040397:-17595 Msa1459680:CDS
TTTACTTAGTGGTAATGCAT+TGG 0.498407 tig0040397:-17659 Msa1459680:CDS
TAATGAGCGTCCACCTAAAG+AGG 0.498637 tig0040397:-17617 Msa1459680:CDS
TCCAGATCCTGGTGGTCCCT+CGG 0.499224 tig0040397:-15804 Msa1459680:CDS
TTGGTATCCTTCTGTGGAAG+AGG 0.505336 tig0040397:-16839 Msa1459680:CDS
TTTGTATGCAGTATTGGCTA+CGG 0.505886 tig0040397:-15891 Msa1459680:intron
GATGACCATAACGATAATGA+TGG 0.508252 tig0040397:-16214 Msa1459680:CDS
GAAGATTTGAGGTTGAGAAG+TGG 0.512998 tig0040397:+17865 None:intergenic
TTGTTTAAACTGAAGTATGT+AGG 0.517023 tig0040397:+16090 None:intergenic
TGTTATCTGATTTGGAATCA+AGG 0.519003 tig0040397:-17534 Msa1459680:CDS
GGGTTGTCATGAGGAAGATG+AGG 0.520868 tig0040397:+17911 None:intergenic
ACTCAATTATAACATGAGCT+TGG 0.526873 tig0040397:+15553 None:intergenic
TCTTTAACCGAGGGACCACC+AGG 0.532906 tig0040397:+15797 None:intergenic
ATTGACGGACTTCCAGATCC+TGG 0.535082 tig0040397:-15815 Msa1459680:CDS
AGGATCTGGAAGTCCGTCAA+TGG 0.539431 tig0040397:+15817 None:intergenic
TAAGCATAGTATTGTACCAT+AGG 0.544493 tig0040397:+15671 None:intergenic
TCATTACCCTCTTCCACAGA+AGG 0.547276 tig0040397:+16832 None:intergenic
GGTTGTCATGAGGAAGATGA+GGG 0.547700 tig0040397:+17912 None:intergenic
CATTACCACTAAGTAAAACT+GGG 0.556805 tig0040397:+17665 None:intergenic
CCTACGGCTTGAACAAAAGC+AGG 0.557352 tig0040397:+16754 None:intergenic
GCAAGGTTGTGCATGAAGGA+AGG 0.559545 tig0040397:+17746 None:intergenic
TGTCATGAGGAAGATGAGGG+AGG 0.561679 tig0040397:+17915 None:intergenic
CTTGTAACAAGTCAGAAAGA+AGG 0.568574 tig0040397:-16793 Msa1459680:CDS
CTTCAGTTTAAACAAGGCAA+CGG 0.568788 tig0040397:-16082 Msa1459680:CDS
GTCATGAGGAAGATGAGGGA+GGG 0.568806 tig0040397:+17916 None:intergenic
GGGTAATGACAAGGGTGTTG+TGG 0.576837 tig0040397:-16818 Msa1459680:CDS
TATTACACTTAGAAAACTCA+CGG 0.578085 tig0040397:-17491 Msa1459680:intron
ACCACATAGGCCTCTTTAGG+TGG 0.587301 tig0040397:+17607 None:intergenic
GTTGTGCATGAAGGAAGGGT+TGG 0.597066 tig0040397:+17751 None:intergenic
CGTTTGTCGTCTTTAACCGA+GGG 0.605535 tig0040397:+15788 None:intergenic
GGAGCGTTGGTATCCTTCTG+TGG 0.606556 tig0040397:-16845 Msa1459680:CDS
GAAGAGACAGAAGAAAAGCG+TGG 0.608619 tig0040397:-15743 Msa1459680:CDS
GGGTTTGTAGGAAATGAGAG+AGG 0.610811 tig0040397:+17819 None:intergenic
TCCACCTAAAGAGGCCTATG+TGG 0.614674 tig0040397:-17608 Msa1459680:CDS
GGGAGGGTTGGATTGAGGAA+AGG 0.615602 tig0040397:+17932 None:intergenic
TGGTATCCTTCTGTGGAAGA+GGG 0.615864 tig0040397:-16838 Msa1459680:CDS
AGTGGAGAGAGAGAGTTGGG+AGG 0.617964 tig0040397:+17883 None:intergenic
AGAACAATGTTGTGCAACAG+AGG 0.624229 tig0040397:-17971 Msa1459680:five_prime_UTR
GTGAGCAAGGTTGTGCATGA+AGG 0.627468 tig0040397:+17742 None:intergenic
TGAGTCTAACTTCAAAACAA+AGG 0.628354 tig0040397:-15765 Msa1459680:CDS
TACATACTTCAGTTTAAACA+AGG 0.635201 tig0040397:-16088 Msa1459680:CDS
CAAGGTTGTGCATGAAGGAA+GGG 0.640898 tig0040397:+17747 None:intergenic
TGTGGAAGAGGGTAATGACA+AGG 0.647686 tig0040397:-16827 Msa1459680:CDS
CTGTTGAGCATGAGTGAGCA+AGG 0.649149 tig0040397:+17729 None:intergenic
GCCATTAGGAAGTACCTGGA+AGG 0.650563 tig0040397:+16698 None:intergenic
TTGCTCACTCATGCTCAACA+GGG 0.667046 tig0040397:-17727 Msa1459680:CDS
AAAGAAGGAGCAGTTACTGG+TGG 0.670414 tig0040397:-16778 Msa1459680:CDS
TTTAAACTGAAGTATGTAGG+CGG 0.672394 tig0040397:+16093 None:intergenic
TCCAGCATCATCAACCACAT+AGG 0.674153 tig0040397:+17594 None:intergenic
GTGGAAGAGGGTAATGACAA+GGG 0.686921 tig0040397:-16826 Msa1459680:CDS
GACGGACTTCCAGATCCTGG+TGG 0.696278 tig0040397:-15812 Msa1459680:CDS
TCTCTGAAACAGTAGCATCG+AGG 0.748886 tig0040397:+16722 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAATAAAAATGTTGAATTTT+TGG - tig0040397:16371-16390 Msa1459680:intron 10.0%
!!! TATATTTGTTGTATTGTAAT+AGG - tig0040397:16267-16286 Msa1459680:CDS 15.0%
!!! ATATCCATTATCTTATTTTT+TGG + tig0040397:17661-17680 None:intergenic 15.0%
!!! TTTTTGAGATTAGAAACAAT+GGG + tig0040397:15505-15524 None:intergenic 20.0%
!!! ATTTTCATATAAGCTATAAG+CGG + tig0040397:15986-16005 None:intergenic 20.0%
!! TTTCTTGAAAAATAAATGCA+AGG - tig0040397:16920-16939 Msa1459680:intron 20.0%
!! AACTCTTCTTAACAAAAAAA+GGG + tig0040397:16999-17018 None:intergenic 20.0%
!! GAAATTAAAGAGTGATAATT+TGG + tig0040397:17705-17724 None:intergenic 20.0%
!! ATAATCCAACAAACATATTT+GGG + tig0040397:17825-17844 None:intergenic 20.0%
!! AATAATCCAACAAACATATT+TGG + tig0040397:17826-17845 None:intergenic 20.0%
!! TATCAATTGTCAATACATAA+AGG - tig0040397:17883-17902 Msa1459680:CDS 20.0%
!! ATCAATTGTCAATACATAAA+GGG - tig0040397:17884-17903 Msa1459680:CDS 20.0%
!!! ATTCTAATCTAGACTATTTT+CGG + tig0040397:17995-18014 None:intergenic 20.0%
!!! CTTTTTGAGATTAGAAACAA+TGG + tig0040397:15506-15525 None:intergenic 25.0%
! TATTACACTTAGAAAACTCA+CGG - tig0040397:15810-15829 Msa1459680:CDS 25.0%
! CATAAGCAATATATGATAAG+CGG - tig0040397:16048-16067 Msa1459680:intron 25.0%
!!! TGAAGTTTTTTCCTTTATCT+AGG + tig0040397:16116-16135 None:intergenic 25.0%
! GTTGTATTGTAATAGGAAAA+CGG - tig0040397:16274-16293 Msa1459680:intron 25.0%
! TCATCAATAAACTGTTAGAA+TGG - tig0040397:16344-16363 Msa1459680:intron 25.0%
!!! ATGTTGAATTTTTGGATTTG+TGG - tig0040397:16379-16398 Msa1459680:intron 25.0%
!!! ATTGTTTTTCTGTAGCATAT+TGG - tig0040397:16645-16664 Msa1459680:intron 25.0%
!!! TTGTTTTTCTGTAGCATATT+GGG - tig0040397:16646-16665 Msa1459680:intron 25.0%
! TGATTATTTATGTCTGTGAA+AGG - tig0040397:16712-16731 Msa1459680:intron 25.0%
!!! TTTTTTCTCACCAACAAATA+TGG - tig0040397:16766-16785 Msa1459680:CDS 25.0%
!! AAGCAACTTTGTTATGAATA+TGG - tig0040397:16833-16852 Msa1459680:CDS 25.0%
! CAACTCTTCTTAACAAAAAA+AGG + tig0040397:17000-17019 None:intergenic 25.0%
!!! TTTTTTGTTAAGAAGAGTTG+AGG - tig0040397:17000-17019 Msa1459680:intron 25.0%
! TTGTTTAAACTGAAGTATGT+AGG + tig0040397:17214-17233 None:intergenic 25.0%
! TACATACTTCAGTTTAAACA+AGG - tig0040397:17213-17232 Msa1459680:intron 25.0%
! GTAGCCAAAAAATAAGATAA+TGG - tig0040397:17654-17673 Msa1459680:CDS 25.0%
!!! CAAATAAGATCAGAGTTTTT+TGG - tig0040397:17784-17803 Msa1459680:CDS 25.0%
! TAATTCCCAAATATGTTTGT+TGG - tig0040397:17817-17836 Msa1459680:CDS 25.0%
! ATTAGAAACAATGGGTTTGT+AGG + tig0040397:15497-15516 None:intergenic 30.0%
CATTACCACTAAGTAAAACT+GGG + tig0040397:15639-15658 None:intergenic 30.0%
! TTTACTTAGTGGTAATGCAT+TGG - tig0040397:15642-15661 Msa1459680:exon 30.0%
!! GAAACGTTTGTTATCTGATT+TGG - tig0040397:15759-15778 Msa1459680:CDS 30.0%
!! TGTTATCTGATTTGGAATCA+AGG - tig0040397:15767-15786 Msa1459680:CDS 30.0%
ACAACTTAGTTAAGCTCATT+TGG + tig0040397:16079-16098 None:intergenic 30.0%
TTGAAACATAGCCTAGATAA+AGG - tig0040397:16102-16121 Msa1459680:CDS 30.0%
!! TGAATTTTTGGATTTGTGGT+TGG - tig0040397:16383-16402 Msa1459680:intron 30.0%
! TGTTTTTCTGTAGCATATTG+GGG - tig0040397:16647-16666 Msa1459680:intron 30.0%
CATATGTTCATAAACTGTGA+AGG - tig0040397:16810-16829 Msa1459680:CDS 30.0%
ATGCACTGAGTATATAGTAA+AGG - tig0040397:16868-16887 Msa1459680:CDS 30.0%
ACTGAGTATATAGTAAAGGA+CGG - tig0040397:16872-16891 Msa1459680:CDS 30.0%
TCATCATGATCATTGATCAT+TGG + tig0040397:17072-17091 None:intergenic 30.0%
ATACAGCTACTAAATGGATA+GGG + tig0040397:17171-17190 None:intergenic 30.0%
TATACAGCTACTAAATGGAT+AGG + tig0040397:17172-17191 None:intergenic 30.0%
CAACATATACAGCTACTAAA+TGG + tig0040397:17177-17196 None:intergenic 30.0%
TTTAAACTGAAGTATGTAGG+CGG + tig0040397:17211-17230 None:intergenic 30.0%
!! TAGCAGTTGTGATCATTTTT+AGG - tig0040397:17357-17376 Msa1459680:intron 30.0%
!! AGCAGTTGTGATCATTTTTA+GGG - tig0040397:17358-17377 Msa1459680:intron 30.0%
TGAGTCTAACTTCAAAACAA+AGG - tig0040397:17536-17555 Msa1459680:CDS 30.0%
!! TATTGCATTTGTTGTTCCTA+TGG - tig0040397:17614-17633 Msa1459680:CDS 30.0%
TAAGCATAGTATTGTACCAT+AGG + tig0040397:17633-17652 None:intergenic 30.0%
ACTCAATTATAACATGAGCT+TGG + tig0040397:17751-17770 None:intergenic 30.0%
CTCATGTTCTGTCTTTGATT+TGG + tig0040397:15312-15331 None:intergenic 35.0%
! GAAATGAGAGAGGTTGATTT+GGG + tig0040397:15475-15494 None:intergenic 35.0%
GCATTACCACTAAGTAAAAC+TGG + tig0040397:15640-15659 None:intergenic 35.0%
! CTTATTTGAGCTTGTTTACC+TGG - tig0040397:15887-15906 Msa1459680:intron 35.0%
TACCTGGATAAAAGAGCTTA+TGG - tig0040397:15903-15922 Msa1459680:intron 35.0%
! TTCCATAAGCTCTTTTATCC+AGG + tig0040397:15908-15927 None:intergenic 35.0%
GTTTATGACATGTCAATGAG+CGG - tig0040397:15930-15949 Msa1459680:intron 35.0%
CTTGTAACAAGTCAGAAAGA+AGG - tig0040397:16508-16527 Msa1459680:intron 35.0%
! ATCGAGGATATTTTCTCCTA+CGG + tig0040397:16566-16585 None:intergenic 35.0%
AAGGATTTACAAGACTGTCT+TGG - tig0040397:16731-16750 Msa1459680:CDS 35.0%
TTCACACTTGCCATATTTGT+TGG + tig0040397:16779-16798 None:intergenic 35.0%
GTAAAGGACGGATGATAATT+TGG - tig0040397:16884-16903 Msa1459680:CDS 35.0%
!! TGAATTGTTTTGTCAGCATG+TGG - tig0040397:16955-16974 Msa1459680:intron 35.0%
!! GAATTGTTTTGTCAGCATGT+GGG - tig0040397:16956-16975 Msa1459680:intron 35.0%
GATGACCATAACGATAATGA+TGG - tig0040397:17087-17106 Msa1459680:intron 35.0%
CATGTCCATCATTATCGTTA+TGG + tig0040397:17095-17114 None:intergenic 35.0%
!!! ATCCCTTTTTAGCTAGCATA+CGG - tig0040397:17144-17163 Msa1459680:intron 35.0%
AGTAGCTGTATATGTTGTCA+AGG - tig0040397:17180-17199 Msa1459680:intron 35.0%
CTTCAGTTTAAACAAGGCAA+CGG - tig0040397:17219-17238 Msa1459680:intron 35.0%
GTAACTTCAGAAGACATACA+TGG + tig0040397:17327-17346 None:intergenic 35.0%
!! GCAGTTGTGATCATTTTTAG+GGG - tig0040397:17359-17378 Msa1459680:intron 35.0%
TGCATACAAAAACCAGACAA+TGG + tig0040397:17400-17419 None:intergenic 35.0%
!! CTGGTTTTTGTATGCAGTAT+TGG - tig0040397:17404-17423 Msa1459680:intron 35.0%
!! TTTGTATGCAGTATTGGCTA+CGG - tig0040397:17410-17429 Msa1459680:intron 35.0%
TGCATCAAGTGCATAAAAAC+TGG + tig0040397:17857-17876 None:intergenic 35.0%
AGAACAATGTTGTGCAACAG+AGG - tig0040397:15330-15349 Msa1459680:three_prime_UTR 40.0%
! GAAGATTTGAGGTTGAGAAG+TGG + tig0040397:15439-15458 None:intergenic 40.0%
! GGAAATGAGAGAGGTTGATT+TGG + tig0040397:15476-15495 None:intergenic 40.0%
! TTCAGCCCAGTTTTACTTAG+TGG - tig0040397:15631-15650 Msa1459680:three_prime_UTR 40.0%
!!! AGCTGATGCTTTTGAGTTTG+CGG - tig0040397:16423-16442 Msa1459680:intron 40.0%
! TGAGTTTGCGGACCAAATTT+TGG - tig0040397:16435-16454 Msa1459680:intron 40.0%
GATACCAACGCTCCAAAATT+TGG + tig0040397:16450-16469 None:intergenic 40.0%
!! TTCCTAATGGCTAGTGGATT+TGG - tig0040397:16615-16634 Msa1459680:intron 40.0%
ATCCAAATCCACTAGCCATT+AGG + tig0040397:16620-16639 None:intergenic 40.0%
AGTTGAGGTTGTGCTTTATC+AGG - tig0040397:17015-17034 Msa1459680:intron 40.0%
GTTGAGGTTGTGCTTTATCA+GGG - tig0040397:17016-17035 Msa1459680:intron 40.0%
TTGAGGTTGTGCTTTATCAG+GGG - tig0040397:17017-17036 Msa1459680:intron 40.0%
GACCGTATGCTAGCTAAAAA+GGG + tig0040397:17149-17168 None:intergenic 40.0%
TTTCAGCAGGGTGATAAACT+AGG - tig0040397:17244-17263 Msa1459680:intron 40.0%
TTCAGCAGGGTGATAAACTA+GGG - tig0040397:17245-17264 Msa1459680:intron 40.0%
AACACACTACTACCATTGTC+TGG - tig0040397:17385-17404 Msa1459680:intron 40.0%
GGACAATTCTCTCTTGTAGT+TGG - tig0040397:17579-17598 Msa1459680:CDS 40.0%
CAATTCTCTCTTGTAGTTGG+AGG - tig0040397:17582-17601 Msa1459680:CDS 40.0%
TCTTGTAGTTGGAGGTTTGT+TGG - tig0040397:17590-17609 Msa1459680:CDS 40.0%
GGTTGTCATGAGGAAGATGA+GGG + tig0040397:15392-15411 None:intergenic 45.0%
GAGGAAAAAGGGTTGTCATG+AGG + tig0040397:15402-15421 None:intergenic 45.0%
GAGAGAGTTGGGAGGAAAAA+GGG + tig0040397:15413-15432 None:intergenic 45.0%
AGAGAGAGTTGGGAGGAAAA+AGG + tig0040397:15414-15433 None:intergenic 45.0%
AGAAGTGGAGAGAGAGAGTT+GGG + tig0040397:15424-15443 None:intergenic 45.0%
GGAGAGAAGGTGAAGATTTG+AGG + tig0040397:15450-15469 None:intergenic 45.0%
!! GTTGATTTGGGTTGGAGAGA+AGG + tig0040397:15463-15482 None:intergenic 45.0%
!! TGAGAGAGGTTGATTTGGGT+TGG + tig0040397:15471-15490 None:intergenic 45.0%
GGGTTTGTAGGAAATGAGAG+AGG + tig0040397:15485-15504 None:intergenic 45.0%
CAAGGTTGTGCATGAAGGAA+GGG + tig0040397:15557-15576 None:intergenic 45.0%
TTGCTCACTCATGCTCAACA+GGG - tig0040397:15574-15593 Msa1459680:three_prime_UTR 45.0%
TAATGAGCGTCCACCTAAAG+AGG - tig0040397:15684-15703 Msa1459680:CDS 45.0%
TCAACCACATAGGCCTCTTT+AGG + tig0040397:15700-15719 None:intergenic 45.0%
TCCAGCATCATCAACCACAT+AGG + tig0040397:15710-15729 None:intergenic 45.0%
TTGGTATCCTTCTGTGGAAG+AGG - tig0040397:16462-16481 Msa1459680:intron 45.0%
TGGTATCCTTCTGTGGAAGA+GGG - tig0040397:16463-16482 Msa1459680:intron 45.0%
TCATTACCCTCTTCCACAGA+AGG + tig0040397:16472-16491 None:intergenic 45.0%
TGTGGAAGAGGGTAATGACA+AGG - tig0040397:16474-16493 Msa1459680:intron 45.0%
GTGGAAGAGGGTAATGACAA+GGG - tig0040397:16475-16494 Msa1459680:intron 45.0%
CAGAAAGAAGGAGCAGTTAC+TGG - tig0040397:16520-16539 Msa1459680:intron 45.0%
AAAGAAGGAGCAGTTACTGG+TGG - tig0040397:16523-16542 Msa1459680:intron 45.0%
!! TCTCTGAAACAGTAGCATCG+AGG + tig0040397:16582-16601 None:intergenic 45.0%
ACTGTTTCAGAGAACCTTCC+AGG - tig0040397:16589-16608 Msa1459680:intron 45.0%
ACCTTCCAGGTACTTCCTAA+TGG - tig0040397:16602-16621 Msa1459680:intron 45.0%
!! ACTAGCCATTAGGAAGTACC+TGG + tig0040397:16610-16629 None:intergenic 45.0%
AGGTACTTCCTAATGGCTAG+TGG - tig0040397:16609-16628 Msa1459680:intron 45.0%
GGACCGTATGCTAGCTAAAA+AGG + tig0040397:17150-17169 None:intergenic 45.0%
!! AAGGCAACGGATTTTCAGCA+GGG - tig0040397:17232-17251 Msa1459680:intron 45.0%
CGTTTGTCGTCTTTAACCGA+GGG + tig0040397:17516-17535 None:intergenic 45.0%
ACGTTTGTCGTCTTTAACCG+AGG + tig0040397:17517-17536 None:intergenic 45.0%
GAAGAGACAGAAGAAAAGCG+TGG - tig0040397:17558-17577 Msa1459680:CDS 45.0%
GTCATGAGGAAGATGAGGGA+GGG + tig0040397:15388-15407 None:intergenic 50.0%
TGTCATGAGGAAGATGAGGG+AGG + tig0040397:15389-15408 None:intergenic 50.0%
GGGTTGTCATGAGGAAGATG+AGG + tig0040397:15393-15412 None:intergenic 50.0%
GAGAAGTGGAGAGAGAGAGT+TGG + tig0040397:15425-15444 None:intergenic 50.0%
GTTGTGCATGAAGGAAGGGT+TGG + tig0040397:15553-15572 None:intergenic 50.0%
GCAAGGTTGTGCATGAAGGA+AGG + tig0040397:15558-15577 None:intergenic 50.0%
GTGAGCAAGGTTGTGCATGA+AGG + tig0040397:15562-15581 None:intergenic 50.0%
CTGTTGAGCATGAGTGAGCA+AGG + tig0040397:15575-15594 None:intergenic 50.0%
CTTGCTCACTCATGCTCAAC+AGG - tig0040397:15573-15592 Msa1459680:three_prime_UTR 50.0%
TCCACCTAAAGAGGCCTATG+TGG - tig0040397:15693-15712 Msa1459680:CDS 50.0%
ACCACATAGGCCTCTTTAGG+TGG + tig0040397:15697-15716 None:intergenic 50.0%
!! GCCTATGTGGTTGATGATGC+TGG - tig0040397:15706-15725 Msa1459680:CDS 50.0%
!!! CGGACCAAATTTTGGAGCGT+TGG - tig0040397:16443-16462 Msa1459680:intron 50.0%
!! GGGTAATGACAAGGGTGTTG+TGG - tig0040397:16483-16502 Msa1459680:intron 50.0%
CCTACGGCTTGAACAAAAGC+AGG + tig0040397:16550-16569 None:intergenic 50.0%
!! CCTGCTTTTGTTCAAGCCGT+AGG - tig0040397:16547-16566 Msa1459680:intron 50.0%
!! GCCATTAGGAAGTACCTGGA+AGG + tig0040397:16606-16625 None:intergenic 50.0%
!! CAAGGCAACGGATTTTCAGC+AGG - tig0040397:17231-17250 Msa1459680:intron 50.0%
! CGACTAGTTGCTGCCATTGA+CGG - tig0040397:17471-17490 Msa1459680:intron 50.0%
AGGATCTGGAAGTCCGTCAA+TGG + tig0040397:17487-17506 None:intergenic 50.0%
!! ATTGACGGACTTCCAGATCC+TGG - tig0040397:17486-17505 Msa1459680:intron 50.0%
GGGAGGGTTGGATTGAGGAA+AGG + tig0040397:15372-15391 None:intergenic 55.0%
GATGAGGGAGGGTTGGATTG+AGG + tig0040397:15377-15396 None:intergenic 55.0%
TGAGGAAGATGAGGGAGGGT+TGG + tig0040397:15384-15403 None:intergenic 55.0%
AGTGGAGAGAGAGAGTTGGG+AGG + tig0040397:15421-15440 None:intergenic 55.0%
GTGCATGAAGGAAGGGTTGG+TGG + tig0040397:15550-15569 None:intergenic 55.0%
!! GGAGCGTTGGTATCCTTCTG+TGG - tig0040397:16456-16475 Msa1459680:intron 55.0%
TCTTTAACCGAGGGACCACC+AGG + tig0040397:17507-17526 None:intergenic 55.0%
! GACGGACTTCCAGATCCTGG+TGG - tig0040397:17489-17508 Msa1459680:intron 60.0%
TCCAGATCCTGGTGGTCCCT+CGG - tig0040397:17497-17516 Msa1459680:CDS 60.0%
ACCGAGGGACCACCAGGATC+TGG + tig0040397:17501-17520 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
tig0040397 gene 15306 18017 15306 ID=Msa1459680;Name=Msa1459680
tig0040397 mRNA 15306 18017 15306 ID=Msa1459680-mRNA-1;Parent=Msa1459680;Name=Msa1459680-mRNA-1;_AED=0.05;_eAED=0.05;_QI=97|0.25|0.6|0.6|1|1|5|349|332
tig0040397 exon 15306 15902 15306 ID=Msa1459680-mRNA-1:exon:22368;Parent=Msa1459680-mRNA-1
tig0040397 exon 16070 16121 16070 ID=Msa1459680-mRNA-1:exon:22367;Parent=Msa1459680-mRNA-1
tig0040397 exon 16210 16286 16210 ID=Msa1459680-mRNA-1:exon:22366;Parent=Msa1459680-mRNA-1
tig0040397 exon 16713 16905 16713 ID=Msa1459680-mRNA-1:exon:22365;Parent=Msa1459680-mRNA-1
tig0040397 exon 17492 18017 17492 ID=Msa1459680-mRNA-1:exon:22364;Parent=Msa1459680-mRNA-1
tig0040397 five_prime_UTR 17921 18017 17921 ID=Msa1459680-mRNA-1:five_prime_utr;Parent=Msa1459680-mRNA-1
tig0040397 CDS 17492 17920 17492 ID=Msa1459680-mRNA-1:cds;Parent=Msa1459680-mRNA-1
tig0040397 CDS 16713 16905 16713 ID=Msa1459680-mRNA-1:cds;Parent=Msa1459680-mRNA-1
tig0040397 CDS 16210 16286 16210 ID=Msa1459680-mRNA-1:cds;Parent=Msa1459680-mRNA-1
tig0040397 CDS 16070 16121 16070 ID=Msa1459680-mRNA-1:cds;Parent=Msa1459680-mRNA-1
tig0040397 CDS 15655 15902 15655 ID=Msa1459680-mRNA-1:cds;Parent=Msa1459680-mRNA-1
tig0040397 three_prime_UTR 15306 15654 15306 ID=Msa1459680-mRNA-1:three_prime_utr;Parent=Msa1459680-mRNA-1
Gene Sequence

>Msa1459680

ATGACAACCCTTTTTCCTCCCAACTCTCTCTCTCCACTTCTCAACCTCAAATCTTCACCTTCTCTCCAACCCAAATCAACCTCTCTCATTTCCTACAAACCCATTGTTTCTAATCTCAAAAAGACTCAAACTTTATCTCTAAAACCACCAACCCTTCCTTCATGCACAACCTTGCTCACTCATGCTCAACAGGGTCTTGCAGCTTTAGCTATCACTTTAGCATTGAATTTCAGCCCAGTTTTACTTAGTGGTAATGCATTGGCTTCTGAATTTGATGTGATTAATGAGCGTCCACCTAAAGAGGCCTATGTGGTTGATGATGCTGGAGTTCTTAGTAGAGTCACTAAGTCTGATTTGAAACGTTTGTTATCTGATTTGGAATCAAGGAAGAATTTTCATATCAATTTTATTACACTTAGAAAACTCACGAGTAAAGCTGATGCTTTTGAGTTTGCGGACCAAATTTTGGAGCGTTGGTATCCTTCTGTGGAAGAGGGTAATGACAAGGGTGTTGTGGTTCTTGTAACAAGTCAGAAAGAAGGAGCAGTTACTGGTGGACCTGCTTTTGTTCAAGCCGTAGGAGAAAATATCCTCGATGCTACTGTTTCAGAGAACCTTCCAGGGGCACTTTCAAGAAGCAAGATTGCAGACACTCCAATGATCAATGATCATGATGACCATAACGATAATGATGGACATGCTTATCCGCCTACATACTTCAGTTTAAACAAGGCAACGGATTTTCAGCAGGTATTGGCTACGGATGAGAAGTACAATGAAGCAATTTATAGCACTGCTAAACGACTAGTTGCTGCCATTGACGGACTTCCAGATCCTGGTGGTCCCTCGGTTAAAGACGACAAACGTGAGTCTAACTTCAAAACAAAGGAAGAGACAGAAGAAAAGCGTGGACAATTCTCTCTTGTAGTTGGAGGTTTGTTGGTTATTGCATTTGTTGTTCCTATGGTACAATACTATGCTTATGTAGCCAAAAAATAA

Protein sequence

>Msa1459680

MTTLFPPNSLSPLLNLKSSPSLQPKSTSLISYKPIVSNLKKTQTLSLKPPTLPSCTTLLTHAQQGLAALAITLALNFSPVLLSGNALASEFDVINERPPKEAYVVDDAGVLSRVTKSDLKRLLSDLESRKNFHINFITLRKLTSKADAFEFADQILERWYPSVEEGNDKGVVVLVTSQKEGAVTGGPAFVQAVGENILDATVSENLPGALSRSKIADTPMINDHDDHNDNDGHAYPPTYFSLNKATDFQQVLATDEKYNEAIYSTAKRLVAAIDGLPDPGGPSVKDDKRESNFKTKEETEEKRGQFSLVVGGLLVIAFVVPMVQYYAYVAKK*