AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0557440


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0557440 MtrunA17_Chr4g0046561 100.000 401 0 0 1 401 1 401 0.0 811
Msa0557440 MtrunA17_Chr5g0419001 76.836 354 71 4 59 401 53 406 0.0 546
Msa0557440 MtrunA17_Chr3g0097931 44.898 294 153 4 100 388 111 400 3.88e-76 241
Msa0557440 MtrunA17_Chr2g0288011 43.771 297 158 4 97 388 102 394 4.10e-75 239
Msa0557440 MtrunA17_Chr4g0074541 45.118 297 154 4 97 388 99 391 7.63e-74 235
Msa0557440 MtrunA17_Chr2g0291851 38.727 377 204 11 18 385 33 391 5.57e-67 218
Msa0557440 MtrunA17_Chr6g0449891 41.640 317 166 8 96 401 110 418 1.04e-63 210
Msa0557440 MtrunA17_Chr4g0058971 38.689 305 169 7 94 388 80 376 2.06e-60 200
Msa0557440 MtrunA17_Chr3g0117501 38.235 340 189 7 69 398 82 410 7.56e-60 199
Msa0557440 MtrunA17_Chr1g0160071 24.204 314 224 5 89 394 4 311 8.06e-22 95.5
Msa0557440 MtrunA17_Chr3g0114581 25.000 296 210 6 106 394 22 312 1.08e-20 92.4
Msa0557440 MtrunA17_Chr4g0008071 28.247 308 187 9 105 396 19 308 9.08e-18 83.6
Msa0557440 MtrunA17_Chr3g0112981 26.733 303 201 9 106 399 32 322 1.79e-15 77.0
Msa0557440 MtrunA17_Chr4g0056661 26.498 317 206 7 97 401 51 352 2.80e-15 76.6
Msa0557440 MtrunA17_Chr5g0436341 27.687 307 193 13 106 399 16 306 9.75e-14 71.6
Msa0557440 MtrunA17_Chr8g0382081 25.490 306 201 12 106 399 19 309 6.48e-11 63.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0557440 AT5G46110.1 78.049 410 81 3 1 401 1 410 0.0 631
Msa0557440 AT5G46110.4 77.696 408 82 3 1 399 1 408 0.0 626
Msa0557440 AT5G46110.3 75.854 410 79 4 1 401 1 399 0.0 604
Msa0557440 AT5G46110.2 91.216 296 26 0 106 401 2 297 0.0 558
Msa0557440 AT5G54800.1 44.164 317 163 5 77 388 80 387 8.10e-79 248
Msa0557440 AT1G61800.1 44.444 297 156 4 97 388 95 387 1.00e-74 238
Msa0557440 AT1G61800.2 43.813 299 159 4 97 390 95 389 2.13e-74 238
Msa0557440 AT5G17630.1 42.574 303 164 5 97 393 110 408 1.22e-70 228
Msa0557440 AT3G01550.1 39.936 313 176 4 96 401 76 383 6.09e-61 202
Msa0557440 AT5G33320.1 38.742 302 167 5 97 388 106 399 1.72e-57 194
Msa0557440 AT3G01550.2 38.658 313 175 5 96 401 76 378 1.38e-54 185
Msa0557440 AT4G03950.1 32.680 306 144 8 95 394 10 259 1.07e-34 130
Msa0557440 AT1G77610.1 24.916 297 209 5 106 394 16 306 5.28e-21 93.6
Msa0557440 AT1G21870.1 24.497 298 211 5 106 395 22 313 1.40e-19 89.4
Msa0557440 AT1G12500.1 26.688 311 210 6 95 397 55 355 6.38e-18 85.1
Msa0557440 AT3G11320.1 27.832 309 192 11 105 399 17 308 4.82e-17 81.6
Msa0557440 AT5G05820.1 27.302 315 202 10 98 397 5 307 2.04e-16 79.7
Msa0557440 AT5G04160.1 24.437 311 200 10 105 399 18 309 3.61e-11 64.3

Find 130 sgRNAs with CRISPR-Local

Find 292 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCGTTAACCGTCTCTTCTT+TGG 0.202876 4_1:-55808276 None:intergenic
AATTCGTATCAGATCTCTTC+TGG 0.213269 4_1:+55811751 Msa0557440:CDS
AGAGCTATTTATGGCAATAA+TGG 0.232468 4_1:-55812542 None:intergenic
TCACTTGCTCCCGTTGTTCT+TGG 0.232843 4_1:+55811071 Msa0557440:CDS
AATCAATTCACTCACAATTA+AGG 0.248369 4_1:-55811545 None:intergenic
CGTGTCGGTTATCCATTTAT+TGG 0.263404 4_1:+55810291 Msa0557440:CDS
AAACCACTCCCACCAATAAA+TGG 0.287957 4_1:-55810303 None:intergenic
TCGCTTCTCTTCCTCGATCT+TGG 0.296285 4_1:-55812201 None:intergenic
TGGTTTACTGTTTGGTCAGC+TGG 0.324605 4_1:+55810320 Msa0557440:CDS
ACTCTTTGTGCAGACTGATA+TGG 0.337590 4_1:+55811462 Msa0557440:intron
CTCAAACGTGTATTTGTCAT+TGG 0.341903 4_1:+55811958 Msa0557440:CDS
TTCAGCTGGTTGCCGTCTAT+TGG 0.351037 4_1:-55810788 None:intergenic
GATGGCGGGAACCTTGTCTT+TGG 0.354173 4_1:+55808501 Msa0557440:CDS
GGCAGTTCCGATACCAGTTT+GGG 0.371644 4_1:-55812138 None:intergenic
AATCAATTCCCATCACTCTA+TGG 0.376851 4_1:+55811045 Msa0557440:CDS
TGGCAGTTCCGATACCAGTT+TGG 0.380423 4_1:-55812139 None:intergenic
AACAAGTAGAGAGTGATATA+TGG 0.386915 4_1:-55808326 None:intergenic
CTCGATCTTGGCTTTGATGA+AGG 0.387113 4_1:-55812189 None:intergenic
GGAACTGCCATTGCAATTGC+TGG 0.398196 4_1:+55812152 Msa0557440:CDS
AACTGATCCGATCGATTTCA+CGG 0.408658 4_1:-55808475 None:intergenic
TTAATAACTTACTAAGGATA+GGG 0.410074 4_1:-55809556 None:intergenic
AACAAGATTTCCACCCAAAC+TGG 0.413459 4_1:+55812125 Msa0557440:CDS
TGCAATTGCTAAAGTAGGTT+TGG 0.416940 4_1:+55811725 Msa0557440:CDS
CAAACATTTCATTTACATAC+AGG 0.419014 4_1:+55811321 Msa0557440:CDS
ACGAGGGAGGGAGGAGAGTG+TGG 0.419739 4_1:-55808403 None:intergenic
CACTCTCTCCAATGTGTTGG+TGG 0.419872 4_1:-55811905 None:intergenic
ACTAAGAGGTTTATATGTCT+TGG 0.422975 4_1:-55812661 None:intergenic
TGACTGAGCTCTCATTCAAT+TGG 0.423986 4_1:+55811273 Msa0557440:CDS
ACATTCGAATTTAAAATCTT+CGG 0.427035 4_1:+55812721 Msa0557440:three_prime_UTR
TGGATTCTTTAGCAAGTATC+CGG 0.433576 4_1:+55808717 Msa0557440:CDS
GTAGCTGTGTGTCATGCATT+AGG 0.442771 4_1:+55810824 Msa0557440:CDS
GGTGGGAGTGGTTTACTGTT+TGG 0.449636 4_1:+55810312 Msa0557440:CDS
AGACATATAAACCTCTTAGT+TGG 0.457938 4_1:+55812664 Msa0557440:three_prime_UTR
GCTGATGCAATTGCTAAAGT+AGG 0.460289 4_1:+55811720 Msa0557440:CDS
GATCGATTTCACGGAGAGGA+TGG 0.462299 4_1:-55808466 None:intergenic
TTTAATAACTTACTAAGGAT+AGG 0.467169 4_1:-55809557 None:intergenic
GTCGGTTATCCATTTATTGG+TGG 0.471853 4_1:+55810294 Msa0557440:CDS
CGGCAGCGGCGAGGCAAGGA+CGG 0.472383 4_1:-55808581 None:intergenic
TTTGTTGAGACGAGGGAGGG+AGG 0.472501 4_1:-55808412 None:intergenic
AGAGCCGGTGAACAGAGTTC+AGG 0.474149 4_1:-55808537 None:intergenic
ATTCGTATCAGATCTCTTCT+GGG 0.475461 4_1:+55811752 Msa0557440:CDS
GCTGCTTCACAATTCATACT+TGG 0.476554 4_1:+55811020 Msa0557440:CDS
TAGAGCAATGATGGAAATGT+AGG 0.479737 4_1:-55811503 None:intergenic
GGAGAGGATGGAAGCGCCAT+TGG 0.481765 4_1:-55808454 None:intergenic
GCAGACAATTAGAGCAATGA+TGG 0.483032 4_1:-55811512 None:intergenic
AAGAAGTTACCAAGAACAAC+GGG 0.487858 4_1:-55811080 None:intergenic
TATCCATTTATTGGTGGGAG+TGG 0.488687 4_1:+55810300 Msa0557440:CDS
AGCAATTGCATCAGCGAAGC+CGG 0.492917 4_1:-55811712 None:intergenic
ACCTCACCCGGCGGAATCAT+CGG 0.495091 4_1:-55808601 None:intergenic
TGCAGCAAATGAGACATTGC+TGG 0.495272 4_1:-55810855 None:intergenic
CCTTGTTCATTCAGAAAACA+AGG 0.495300 4_1:+55812473 Msa0557440:three_prime_UTR
AGACTCAACAACCAACTAAG+AGG 0.499187 4_1:-55812675 None:intergenic
CGATGAAGTTTGTTGAGACG+AGG 0.500425 4_1:-55808420 None:intergenic
GAGAGACTTACTGCGCGCTT+AGG 0.501415 4_1:-55810355 None:intergenic
CAGCAAGCAAAAGCAGCATA+AGG 0.501533 4_1:+55812314 Msa0557440:intron
TCGGTTATCCATTTATTGGT+GGG 0.505174 4_1:+55810295 Msa0557440:CDS
GAGCTCTCATTCAATTGGCT+CGG 0.505943 4_1:+55811278 Msa0557440:CDS
CGGGAATCAGCAACTTCAGC+TGG 0.506724 4_1:-55810802 None:intergenic
AGCAGCATAAGGCGTCAACT+TGG 0.507742 4_1:+55812325 Msa0557440:exon
GATTTACCTGGTTGTAGAGA+TGG 0.509613 4_1:-55811788 None:intergenic
GCCGCTGCCGATGATTCCGC+CGG 0.511156 4_1:+55808594 Msa0557440:CDS
CAGTGGAGAGAAGGTTGCTC+CGG 0.515808 4_1:+55808693 Msa0557440:intron
AAGTTTGTTGAGACGAGGGA+GGG 0.518226 4_1:-55808415 None:intergenic
TACTTGCTAAAGAATCCAAC+CGG 0.520051 4_1:-55808712 None:intergenic
GATTTGATCCCATAGATTGA+AGG 0.520311 4_1:+55811672 Msa0557440:intron
TCGGATCAGTTTCTGATGGC+GGG 0.521746 4_1:+55808487 Msa0557440:CDS
AAGTGAGAGCCATAGAGTGA+TGG 0.522847 4_1:-55811054 None:intergenic
AGTGAGAGCCATAGAGTGAT+GGG 0.525111 4_1:-55811053 None:intergenic
AGCCACTCTCTCCAATGTGT+TGG 0.526441 4_1:-55811908 None:intergenic
AATTATAGATCTTCTTGTTG+AGG 0.527892 4_1:-55809528 None:intergenic
TCTTTCACACATACCATCAA+AGG 0.528158 4_1:+55810887 Msa0557440:CDS
AATGCATGACACACAGCTAC+GGG 0.532470 4_1:-55810821 None:intergenic
GGAGAGAAGGTTGCTCCGGT+TGG 0.535208 4_1:+55808697 Msa0557440:CDS
ATTTCCACCCAAACTGGTAT+CGG 0.535499 4_1:+55812131 Msa0557440:CDS
CTGTTTGGTCAGCTGGACCG+TGG 0.536968 4_1:+55810327 Msa0557440:CDS
TAATAACTTACTAAGGATAG+GGG 0.543020 4_1:-55809555 None:intergenic
AAGTATCCGGCTCTTACTAC+CGG 0.543311 4_1:+55808730 Msa0557440:CDS
GTATCAGATCTCTTCTGGGT+TGG 0.543662 4_1:+55811756 Msa0557440:CDS
TCATCGGCAGCGGCGAGGCA+AGG 0.548987 4_1:-55808585 None:intergenic
ACTCCATTAGAATCAAAATG+TGG 0.551061 4_1:-55808359 None:intergenic
TTCCGTTTACAGTGGAGAGA+AGG 0.552087 4_1:+55808684 Msa0557440:intron
ATTTGATCCCATAGATTGAA+GGG 0.554805 4_1:+55811673 Msa0557440:intron
CCCGGCGGAATCATCGGCAG+CGG 0.556477 4_1:-55808595 None:intergenic
GATGTTTGTGTTGGTACCTG+TGG 0.556664 4_1:-55808301 None:intergenic
GCTCCTCTCACTCATGCCGT+TGG 0.557451 4_1:+55811928 Msa0557440:CDS
TAATGCATGACACACAGCTA+CGG 0.558261 4_1:-55810822 None:intergenic
ACACACATGAATGTAGTCTC+TGG 0.560522 4_1:+55812619 Msa0557440:three_prime_UTR
ATGAGACATTGCTGGTCACA+TGG 0.561772 4_1:-55810847 None:intergenic
TTGTTTGTGTAGCCAATAGA+CGG 0.564438 4_1:+55810776 Msa0557440:intron
AGCATAAGGCGTCAACTTGG+AGG 0.572414 4_1:+55812328 Msa0557440:exon
CACCAACACATTGGAGAGAG+TGG 0.574915 4_1:+55811906 Msa0557440:CDS
TGTTTGGTCAGCTGGACCGT+GGG 0.575345 4_1:+55810328 Msa0557440:CDS
TATATGGATGATGTTTGTGT+TGG 0.581522 4_1:-55808310 None:intergenic
ATCCTCTCCGTGAAATCGAT+CGG 0.583038 4_1:+55808468 Msa0557440:CDS
CTCCATTAGAATCAAAATGT+GGG 0.586256 4_1:-55808358 None:intergenic
TCACCGGCTCTTAAGAAAAG+TGG 0.587737 4_1:+55808549 Msa0557440:CDS
TGCCATTGCAATTGCTGGAG+TGG 0.587820 4_1:+55812157 Msa0557440:CDS
CCGCTGCCGATGATTCCGCC+GGG 0.591829 4_1:+55808595 Msa0557440:CDS
GAAGCAGCAGCATTAAAGAA+TGG 0.593864 4_1:-55811005 None:intergenic
CCAGGTGGCCACCAACACAT+TGG 0.595085 4_1:+55811897 Msa0557440:intron
AGGGAGGGAGGAGAGTGTGG+TGG 0.595691 4_1:-55808400 None:intergenic
TTGCCAACGGCATGAGTGAG+AGG 0.596312 4_1:-55811931 None:intergenic
TCGTCCTGAACTCTGTTCAC+CGG 0.596519 4_1:+55808533 Msa0557440:CDS
CATCGTGAACACCTCACCAA+TGG 0.599816 4_1:+55808438 Msa0557440:CDS
CGGAATCATCGGCAGCGGCG+AGG 0.608524 4_1:-55808590 None:intergenic
ATCGGATCAGTTTCTGATGG+CGG 0.609178 4_1:+55808486 Msa0557440:CDS
GGATGGAAGCGCCATTGGTG+AGG 0.610076 4_1:-55808449 None:intergenic
TCTAATTGTCTGCATACCAC+CGG 0.610547 4_1:+55811522 Msa0557440:CDS
ACGTTTGAGTACGTTGCCAA+CGG 0.612463 4_1:-55811944 None:intergenic
AATTCACTCACAATTAAGGC+CGG 0.613004 4_1:-55811541 None:intergenic
TATTTGCTCCAAAGAAGAGA+CGG 0.623172 4_1:+55808268 Msa0557440:five_prime_UTR
TGCCACTCCAGCAATTGCAA+TGG 0.625518 4_1:-55812159 None:intergenic
TATCTATTCAAAGAAAGCCA+TGG 0.627126 4_1:+55811346 Msa0557440:CDS
GATGAAGTTTGTTGAGACGA+GGG 0.627977 4_1:-55808419 None:intergenic
GAAGTTTGTTGAGACGAGGG+AGG 0.628044 4_1:-55808416 None:intergenic
AGACGGTTAACGAGAACCAC+AGG 0.632710 4_1:+55808285 Msa0557440:five_prime_UTR
GTGTATGTGCAGCTTCGTGT+CGG 0.636132 4_1:+55810276 Msa0557440:intron
CAGCGGCGAGGCAAGGACGG+AGG 0.637021 4_1:-55808578 None:intergenic
GAAGTTGTCTTCCAAAGACA+AGG 0.638659 4_1:-55808512 None:intergenic
GGGCCTACACTGTTGAAGAC+CGG 0.640749 4_1:+55811693 Msa0557440:CDS
AAGCCGGTCTTCAACAGTGT+AGG 0.642574 4_1:-55811696 None:intergenic
TCGATCGGATCAGTTTCTGA+TGG 0.645770 4_1:+55808483 Msa0557440:CDS
TAAGAAGTTACCAAGAACAA+CGG 0.648794 4_1:-55811081 None:intergenic
AGTTCCGATACCAGTTTGGG+TGG 0.649750 4_1:-55812135 None:intergenic
GGAAATGTAGGCATAGACAT+TGG 0.654461 4_1:-55811491 None:intergenic
AATGTGCTTAGTTCATGAGA+TGG 0.663451 4_1:-55812703 None:intergenic
CTTCATCAAAGCCAAGATCG+AGG 0.668234 4_1:+55812190 Msa0557440:CDS
TCACTCACAATTAAGGCCGG+TGG 0.670675 4_1:-55811538 None:intergenic
TGCGCGCTTAGGAAGACCCA+CGG 0.686142 4_1:-55810344 None:intergenic
ATCCGATCGATTTCACGGAG+AGG 0.699922 4_1:-55808470 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTTTAATTATTATATA+TGG - chr4_1:55808833-55808852 None:intergenic 0.0%
!!! TAGGTATAATTTTTTTTTTG+AGG + chr4_1:55809219-55809238 Msa0557440:intron 15.0%
!! TCAAAAAATAATAAGATACA+AGG - chr4_1:55809637-55809656 None:intergenic 15.0%
!!! ATCAATCTTTTTTTTTTTTG+AGG + chr4_1:55809893-55809912 Msa0557440:intron 15.0%
!! AAAACTTTATGATAAAGATA+TGG + chr4_1:55810916-55810935 Msa0557440:intron 15.0%
!!! TTTCAATGTAATAACAATTT+TGG + chr4_1:55811816-55811835 Msa0557440:intron 15.0%
!! AAGTGTTTATTTACTTATAT+TGG + chr4_1:55812048-55812067 Msa0557440:intron 15.0%
!! AGTGTTTATTTACTTATATT+GGG + chr4_1:55812049-55812068 Msa0557440:intron 15.0%
!! TTAATAACTTACTAAGGATA+GGG - chr4_1:55809559-55809578 None:intergenic 20.0%
!! TTTAATAACTTACTAAGGAT+AGG - chr4_1:55809560-55809579 None:intergenic 20.0%
!!! CGAATTTTAATAACTTACTA+AGG - chr4_1:55809565-55809584 None:intergenic 20.0%
!!! ATCTGAATTCTTTTTTTGAA+GGG - chr4_1:55809829-55809848 None:intergenic 20.0%
!!! AATCTGAATTCTTTTTTTGA+AGG - chr4_1:55809830-55809849 None:intergenic 20.0%
!! AAAAAAAAAAAAGTTAGACC+TGG + chr4_1:55810483-55810502 Msa0557440:intron 20.0%
!! AGTTTCACAATAAATAAGTT+AGG + chr4_1:55810685-55810704 Msa0557440:intron 20.0%
!! AAAATCTAAGTATATTTGCT+AGG - chr4_1:55811403-55811422 None:intergenic 20.0%
!! CAGATTAAGTATTAATTCAT+GGG - chr4_1:55811585-55811604 None:intergenic 20.0%
!! ACAGATTAAGTATTAATTCA+TGG - chr4_1:55811586-55811605 None:intergenic 20.0%
!! ATACTTAATCTGTATTAATG+TGG + chr4_1:55811593-55811612 Msa0557440:intron 20.0%
!!! TTGTTATTACATTGAAAATG+AGG - chr4_1:55811813-55811832 None:intergenic 20.0%
!!! TTAAAAGTGCAATAATATGA+TGG - chr4_1:55812021-55812040 None:intergenic 20.0%
!! ATAATAATGTCAGTTGTATT+TGG - chr4_1:55812278-55812297 None:intergenic 20.0%
!!! AACAAAGTCAATTATTTTGA+AGG - chr4_1:55812383-55812402 None:intergenic 20.0%
!! AGATTTGACAAAAATAAAGA+AGG - chr4_1:55812449-55812468 None:intergenic 20.0%
!!! ATAGTTTTAAGAGCTATTTA+TGG - chr4_1:55812554-55812573 None:intergenic 20.0%
!!! ACATTCGAATTTAAAATCTT+CGG + chr4_1:55812721-55812740 Msa0557440:three_prime_UTR 20.0%
! TTGACATTTAAAAACTAGTG+AGG + chr4_1:55808242-55808261 Msa0557440:five_prime_UTR 25.0%
! GTAATCATATGTATTAGTGT+CGG + chr4_1:55808902-55808921 Msa0557440:intron 25.0%
!!! ATACGTTTTGATTTTATCAC+TGG - chr4_1:55808989-55809008 None:intergenic 25.0%
!!! TTTAATTTTCCTCTTGCTTT+TGG - chr4_1:55809134-55809153 None:intergenic 25.0%
! AATTATAGATCTTCTTGTTG+AGG - chr4_1:55809531-55809550 None:intergenic 25.0%
! TAATAACTTACTAAGGATAG+GGG - chr4_1:55809558-55809577 None:intergenic 25.0%
!! TTCGTTTTATATTTCCATCT+TGG + chr4_1:55809581-55809600 Msa0557440:intron 25.0%
!!! AGAATGTATCACTTTTTCTA+CGG + chr4_1:55810020-55810039 Msa0557440:intron 25.0%
! AAACTTATGACAAGAAACTA+AGG - chr4_1:55810236-55810255 None:intergenic 25.0%
! CACCATGTTATGTTATTAAT+CGG + chr4_1:55810614-55810633 Msa0557440:intron 25.0%
! AACCGATTAATAACATAACA+TGG - chr4_1:55810619-55810638 None:intergenic 25.0%
! GTTATGTTATTAATCGGTTA+AGG + chr4_1:55810620-55810639 Msa0557440:intron 25.0%
!! ACAAATGTATCGATAATCAT+AGG - chr4_1:55811137-55811156 None:intergenic 25.0%
! TGCATGAAAAATTGATCATA+TGG + chr4_1:55811179-55811198 Msa0557440:intron 25.0%
! CAAACATTTCATTTACATAC+AGG + chr4_1:55811321-55811340 Msa0557440:CDS 25.0%
!! AGAAGGTATATAATTAACCA+TGG - chr4_1:55811366-55811385 None:intergenic 25.0%
! AATCAATTCACTCACAATTA+AGG - chr4_1:55811548-55811567 None:intergenic 25.0%
!!! AAAATACTTTGCTCTTGTTT+TGG + chr4_1:55811626-55811645 Msa0557440:intron 25.0%
! ATCAAATCATGAAACAATTG+AGG - chr4_1:55811660-55811679 None:intergenic 25.0%
! ATATAATATATAGTTCCAGC+AGG - chr4_1:55811853-55811872 None:intergenic 25.0%
!! GGATTTTCAATCATTATCTT+CGG + chr4_1:55811979-55811998 Msa0557440:CDS 25.0%
! AAAATGTCAGATTTCTTGAA+TGG - chr4_1:55812078-55812097 None:intergenic 25.0%
! TGAATATAATTGCTTGACAT+AGG + chr4_1:55812101-55812120 Msa0557440:intron 25.0%
TATATGGATGATGTTTGTGT+TGG - chr4_1:55808313-55808332 None:intergenic 30.0%
AACAAGTAGAGAGTGATATA+TGG - chr4_1:55808329-55808348 None:intergenic 30.0%
!!! TTCCCACATTTTGATTCTAA+TGG + chr4_1:55808356-55808375 Msa0557440:exon 30.0%
CTCCATTAGAATCAAAATGT+GGG - chr4_1:55808361-55808380 None:intergenic 30.0%
ACTCCATTAGAATCAAAATG+TGG - chr4_1:55808362-55808381 None:intergenic 30.0%
!! TTAAGTCAGAACGGATTAAA+CGG - chr4_1:55808627-55808646 None:intergenic 30.0%
!!! ACGGAATTTTTAAGTCAGAA+CGG - chr4_1:55808636-55808655 None:intergenic 30.0%
AAATAACTACCGTATACATG+AGG + chr4_1:55809093-55809112 Msa0557440:intron 30.0%
TATACTATCCTGCAATAAAG+GGG - chr4_1:55809195-55809214 None:intergenic 30.0%
GTATACTATCCTGCAATAAA+GGG - chr4_1:55809196-55809215 None:intergenic 30.0%
AGTATACTATCCTGCAATAA+AGG - chr4_1:55809197-55809216 None:intergenic 30.0%
GACACATATTAGTATCATCA+GGG - chr4_1:55809301-55809320 None:intergenic 30.0%
CTGATGATACTAATATGTGT+CGG + chr4_1:55809300-55809319 Msa0557440:intron 30.0%
! TTTTTGTCCTTTTGATATGC+AGG + chr4_1:55809479-55809498 Msa0557440:intron 30.0%
!! AAAAGTACCTGCATATCAAA+AGG - chr4_1:55809489-55809508 None:intergenic 30.0%
TAAGATACAAGGATAAGACA+TGG - chr4_1:55809626-55809645 None:intergenic 30.0%
TGTATCTTCATGTGCTAAAA+AGG + chr4_1:55809662-55809681 Msa0557440:intron 30.0%
ATGTGCTAAAAAGGACATTA+TGG + chr4_1:55809671-55809690 Msa0557440:intron 30.0%
TAAGCAATCATCATGGTTTA+GGG - chr4_1:55810392-55810411 None:intergenic 30.0%
TTAAGCAATCATCATGGTTT+AGG - chr4_1:55810393-55810412 None:intergenic 30.0%
AACCATGATGATTGCTTAAT+AGG + chr4_1:55810394-55810413 Msa0557440:intron 30.0%
!! GCGAATTTTGAGTAATTCAA+GGG - chr4_1:55810421-55810440 None:intergenic 30.0%
!! TGCGAATTTTGAGTAATTCA+AGG - chr4_1:55810422-55810441 None:intergenic 30.0%
!!! TTTTTTTTAAGAAACCGACC+AGG - chr4_1:55810467-55810486 None:intergenic 30.0%
AAAAAAAAGTTAGACCTGGT+TGG + chr4_1:55810487-55810506 Msa0557440:intron 30.0%
TATAGCTTAAAAAACCAACC+AGG - chr4_1:55810504-55810523 None:intergenic 30.0%
TAAACTAGTAGTGTCTCAAA+AGG - chr4_1:55810664-55810683 None:intergenic 30.0%
!! AAGTTTTATGTCACCTTTGA+TGG - chr4_1:55810903-55810922 None:intergenic 30.0%
TAAGAAGTTACCAAGAACAA+CGG - chr4_1:55811084-55811103 None:intergenic 30.0%
TTCATGCATATTGTTGTAAG+TGG - chr4_1:55811167-55811186 None:intergenic 30.0%
GAAAAATTGATCATATGGAG+AGG + chr4_1:55811184-55811203 Msa0557440:intron 30.0%
!! TTTTGTTTGTGACACTTTTC+AGG + chr4_1:55811233-55811252 Msa0557440:intron 30.0%
TATCTATTCAAAGAAAGCCA+TGG + chr4_1:55811346-55811365 Msa0557440:CDS 30.0%
! ATATTTGCTAGGAATGAAGT+TGG - chr4_1:55811392-55811411 None:intergenic 30.0%
ATTTGATCCCATAGATTGAA+GGG + chr4_1:55811673-55811692 Msa0557440:intron 30.0%
ATTGAAAATGAGGATTTACC+TGG - chr4_1:55811803-55811822 None:intergenic 30.0%
! TTGTTTTCTGAATGAACAAG+GGG - chr4_1:55812474-55812493 None:intergenic 30.0%
!! CTTGTTTTCTGAATGAACAA+GGG - chr4_1:55812475-55812494 None:intergenic 30.0%
AGAGCTATTTATGGCAATAA+TGG - chr4_1:55812545-55812564 None:intergenic 30.0%
ACTAAGAGGTTTATATGTCT+TGG - chr4_1:55812664-55812683 None:intergenic 30.0%
AGACATATAAACCTCTTAGT+TGG + chr4_1:55812664-55812683 Msa0557440:three_prime_UTR 30.0%
TATTTGCTCCAAAGAAGAGA+CGG + chr4_1:55808268-55808287 Msa0557440:five_prime_UTR 35.0%
!!! TGTTGTTTTTCCGTTTACAG+TGG + chr4_1:55808676-55808695 Msa0557440:intron 35.0%
! TACTTGCTAAAGAATCCAAC+CGG - chr4_1:55808715-55808734 None:intergenic 35.0%
TGGATTCTTTAGCAAGTATC+CGG + chr4_1:55808717-55808736 Msa0557440:CDS 35.0%
CCAAGTGAAGAAGAAAAAAC+CGG - chr4_1:55808752-55808771 None:intergenic 35.0%
TACAACGTGTCGTATATATG+CGG + chr4_1:55809055-55809074 Msa0557440:intron 35.0%
!! CGGTAGTTATTTTCACCTAT+GGG - chr4_1:55809085-55809104 None:intergenic 35.0%
!! ACGGTAGTTATTTTCACCTA+TGG - chr4_1:55809086-55809105 None:intergenic 35.0%
ATACTATCCTGCAATAAAGG+GGG - chr4_1:55809194-55809213 None:intergenic 35.0%
TTGCAGGATAGTATACTACT+AGG + chr4_1:55809200-55809219 Msa0557440:intron 35.0%
CGACACATATTAGTATCATC+AGG - chr4_1:55809302-55809321 None:intergenic 35.0%
TCGGTTATCCATTTATTGGT+GGG + chr4_1:55810295-55810314 Msa0557440:CDS 35.0%
ATCATGGTTTAGGGGATTAT+GGG - chr4_1:55810383-55810402 None:intergenic 35.0%
AAGCAATCATCATGGTTTAG+GGG - chr4_1:55810391-55810410 None:intergenic 35.0%
GACCTATTAAGCAATCATCA+TGG - chr4_1:55810399-55810418 None:intergenic 35.0%
CAAACATTAGAAGTTAGACC+TGG + chr4_1:55810446-55810465 Msa0557440:intron 35.0%
TTCAGAATTGTTCAACCCAT+CGG - chr4_1:55810550-55810569 None:intergenic 35.0%
! ATGGGTTGAACAATTCTGAA+GGG + chr4_1:55810550-55810569 Msa0557440:intron 35.0%
ACATGGTGAATTCAGAAAAG+TGG - chr4_1:55810602-55810621 None:intergenic 35.0%
TTGTTTGTGTAGCCAATAGA+CGG + chr4_1:55810776-55810795 Msa0557440:intron 35.0%
TCTTTCACACATACCATCAA+AGG + chr4_1:55810887-55810906 Msa0557440:CDS 35.0%
AATCAATTCCCATCACTCTA+TGG + chr4_1:55811045-55811064 Msa0557440:CDS 35.0%
AAGAAGTTACCAAGAACAAC+GGG - chr4_1:55811083-55811102 None:intergenic 35.0%
ATGGAGAGGAATTTAGTAAC+TGG + chr4_1:55811198-55811217 Msa0557440:intron 35.0%
! TAGAGCAATGATGGAAATGT+AGG - chr4_1:55811506-55811525 None:intergenic 35.0%
AATTCACTCACAATTAAGGC+CGG - chr4_1:55811544-55811563 None:intergenic 35.0%
GATTTGATCCCATAGATTGA+AGG + chr4_1:55811672-55811691 Msa0557440:intron 35.0%
TGCAATTGCTAAAGTAGGTT+TGG + chr4_1:55811725-55811744 Msa0557440:CDS 35.0%
AATTCGTATCAGATCTCTTC+TGG + chr4_1:55811751-55811770 Msa0557440:CDS 35.0%
ATTCGTATCAGATCTCTTCT+GGG + chr4_1:55811752-55811771 Msa0557440:CDS 35.0%
CTCAAACGTGTATTTGTCAT+TGG + chr4_1:55811958-55811977 Msa0557440:CDS 35.0%
CTTGCTGAGAAGAAAAAGAA+AGG - chr4_1:55812301-55812320 None:intergenic 35.0%
!!! CCTTGTTTTCTGAATGAACA+AGG - chr4_1:55812476-55812495 None:intergenic 35.0%
CCTTGTTCATTCAGAAAACA+AGG + chr4_1:55812473-55812492 Msa0557440:three_prime_UTR 35.0%
AATGTGCTTAGTTCATGAGA+TGG - chr4_1:55812706-55812725 None:intergenic 35.0%
!! GATGAAGTTTGTTGAGACGA+GGG - chr4_1:55808422-55808441 None:intergenic 40.0%
! AACTGATCCGATCGATTTCA+CGG - chr4_1:55808478-55808497 None:intergenic 40.0%
GAAGTTGTCTTCCAAAGACA+AGG - chr4_1:55808515-55808534 None:intergenic 40.0%
!! ACACCACTTTTCTTAAGAGC+CGG - chr4_1:55808555-55808574 None:intergenic 40.0%
TAGTGAGTACAGTTACACGA+CGG - chr4_1:55808655-55808674 None:intergenic 40.0%
AACCTTCTCTCCACTGTAAA+CGG - chr4_1:55808689-55808708 None:intergenic 40.0%
AAAAAACCGGTAGTAAGAGC+CGG - chr4_1:55808739-55808758 None:intergenic 40.0%
!!! CCGGTTTTTTCTTCTTCACT+TGG + chr4_1:55808749-55808768 Msa0557440:CDS 40.0%
CGTGTCTGTATCTGTTTCAT+CGG - chr4_1:55808784-55808803 None:intergenic 40.0%
TATATATGCGGTACACCCAT+AGG + chr4_1:55809067-55809086 Msa0557440:intron 40.0%
!!! TCTTGCTTTTGGTGTTAGGT+GGG - chr4_1:55809123-55809142 None:intergenic 40.0%
!!! TTCCTCTTGCTTTTGGTGTT+AGG - chr4_1:55809127-55809146 None:intergenic 40.0%
!! GGCTTTTGATTGTTTTGTGC+AGG - chr4_1:55809157-55809176 None:intergenic 40.0%
!!! TTTTTTGAGGTCCATCCTTG+AGG + chr4_1:55809232-55809251 Msa0557440:intron 40.0%
!!! TTTTTGAGGTCCATCCTTGA+GGG + chr4_1:55809233-55809252 Msa0557440:intron 40.0%
CATATTAGTATCATCAGGGC+CGG - chr4_1:55809297-55809316 None:intergenic 40.0%
! TTAGGTATTGTAGCCGTGTT+CGG - chr4_1:55809329-55809348 None:intergenic 40.0%
ACAAACACAGACACTCTCTT+AGG - chr4_1:55809347-55809366 None:intergenic 40.0%
CATGGAATACATGAACGAAC+AGG - chr4_1:55809608-55809627 None:intergenic 40.0%
GGTAAATCTGAATTCTAGCG+TGG - chr4_1:55809808-55809827 None:intergenic 40.0%
!! CGTGTCGGTTATCCATTTAT+TGG + chr4_1:55810291-55810310 Msa0557440:CDS 40.0%
GTCGGTTATCCATTTATTGG+TGG + chr4_1:55810294-55810313 Msa0557440:CDS 40.0%
TATCCATTTATTGGTGGGAG+TGG + chr4_1:55810300-55810319 Msa0557440:CDS 40.0%
AAACCACTCCCACCAATAAA+TGG - chr4_1:55810306-55810325 None:intergenic 40.0%
CATCATGGTTTAGGGGATTA+TGG - chr4_1:55810384-55810403 None:intergenic 40.0%
CATTAGAAGTTAGACCTGGT+CGG + chr4_1:55810450-55810469 Msa0557440:intron 40.0%
ATCAGAAGTTACGATCCGAT+GGG + chr4_1:55810532-55810551 Msa0557440:intron 40.0%
!! GATGGGTTGAACAATTCTGA+AGG + chr4_1:55810549-55810568 Msa0557440:intron 40.0%
TGGTGAATTCAGAAAAGTGG+TGG - chr4_1:55810599-55810618 None:intergenic 40.0%
TAATGCATGACACACAGCTA+CGG - chr4_1:55810825-55810844 None:intergenic 40.0%
GAAGCAGCAGCATTAAAGAA+TGG - chr4_1:55811008-55811027 None:intergenic 40.0%
GCTGCTTCACAATTCATACT+TGG + chr4_1:55811020-55811039 Msa0557440:CDS 40.0%
TGACTGAGCTCTCATTCAAT+TGG + chr4_1:55811273-55811292 Msa0557440:CDS 40.0%
AGGAATGAAGTTGGAGAAGA+AGG - chr4_1:55811383-55811402 None:intergenic 40.0%
ACTCTTTGTGCAGACTGATA+TGG + chr4_1:55811462-55811481 Msa0557440:intron 40.0%
GGAAATGTAGGCATAGACAT+TGG - chr4_1:55811494-55811513 None:intergenic 40.0%
GCAGACAATTAGAGCAATGA+TGG - chr4_1:55811515-55811534 None:intergenic 40.0%
TCTAATTGTCTGCATACCAC+CGG + chr4_1:55811522-55811541 Msa0557440:CDS 40.0%
GCTGATGCAATTGCTAAAGT+AGG + chr4_1:55811720-55811739 Msa0557440:CDS 40.0%
! GTTTTACCATCTCTACAACC+AGG + chr4_1:55811782-55811801 Msa0557440:CDS 40.0%
GATTTACCTGGTTGTAGAGA+TGG - chr4_1:55811791-55811810 None:intergenic 40.0%
TTGGATGATATTAAGCCTGC+TGG + chr4_1:55811835-55811854 Msa0557440:intron 40.0%
! TACCTACATTTTTCATCGCC+AGG + chr4_1:55811879-55811898 Msa0557440:intron 40.0%
AACAAGATTTCCACCCAAAC+TGG + chr4_1:55812125-55812144 Msa0557440:CDS 40.0%
ATTTCCACCCAAACTGGTAT+CGG + chr4_1:55812131-55812150 Msa0557440:CDS 40.0%
ACACACATGAATGTAGTCTC+TGG + chr4_1:55812619-55812638 Msa0557440:three_prime_UTR 40.0%
AGACTCAACAACCAACTAAG+AGG - chr4_1:55812678-55812697 None:intergenic 40.0%
CTCGTTAACCGTCTCTTCTT+TGG - chr4_1:55808279-55808298 None:intergenic 45.0%
! GATGTTTGTGTTGGTACCTG+TGG - chr4_1:55808304-55808323 None:intergenic 45.0%
!! AAGTTTGTTGAGACGAGGGA+GGG - chr4_1:55808418-55808437 None:intergenic 45.0%
!! CGATGAAGTTTGTTGAGACG+AGG - chr4_1:55808423-55808442 None:intergenic 45.0%
ATCCTCTCCGTGAAATCGAT+CGG + chr4_1:55808468-55808487 Msa0557440:CDS 45.0%
TCGATCGGATCAGTTTCTGA+TGG + chr4_1:55808483-55808502 Msa0557440:CDS 45.0%
ATCGGATCAGTTTCTGATGG+CGG + chr4_1:55808486-55808505 Msa0557440:CDS 45.0%
!! TCACCGGCTCTTAAGAAAAG+TGG + chr4_1:55808549-55808568 Msa0557440:CDS 45.0%
TTCCGTTTACAGTGGAGAGA+AGG + chr4_1:55808684-55808703 Msa0557440:intron 45.0%
AAGTATCCGGCTCTTACTAC+CGG + chr4_1:55808730-55808749 Msa0557440:CDS 45.0%
! AGTGTCGGATCATGATACTC+AGG + chr4_1:55808917-55808936 Msa0557440:intron 45.0%
GTGTCGGATCATGATACTCA+GGG + chr4_1:55808918-55808937 Msa0557440:intron 45.0%
!! TCGGCTCTGGAAATGAAAAG+AGG + chr4_1:55808963-55808982 Msa0557440:intron 45.0%
GTGGGGATTCCTCATGTATA+CGG - chr4_1:55809105-55809124 None:intergenic 45.0%
!!! CTTGCTTTTGGTGTTAGGTG+GGG - chr4_1:55809122-55809141 None:intergenic 45.0%
!!! CTCTTGCTTTTGGTGTTAGG+TGG - chr4_1:55809124-55809143 None:intergenic 45.0%
CACCTAACACCAAAAGCAAG+AGG + chr4_1:55809122-55809141 Msa0557440:intron 45.0%
TAAACCACATCGTGTGTGAG+TGG + chr4_1:55809426-55809445 Msa0557440:intron 45.0%
ATGAACGAACAGGACCAAGA+TGG - chr4_1:55809598-55809617 None:intergenic 45.0%
TGGTTTACTGTTTGGTCAGC+TGG + chr4_1:55810320-55810339 Msa0557440:CDS 45.0%
CATCAGAAGTTACGATCCGA+TGG + chr4_1:55810531-55810550 Msa0557440:intron 45.0%
AATGCATGACACACAGCTAC+GGG - chr4_1:55810824-55810843 None:intergenic 45.0%
GTAGCTGTGTGTCATGCATT+AGG + chr4_1:55810824-55810843 Msa0557440:CDS 45.0%
ATGAGACATTGCTGGTCACA+TGG - chr4_1:55810850-55810869 None:intergenic 45.0%
TGCAGCAAATGAGACATTGC+TGG - chr4_1:55810858-55810877 None:intergenic 45.0%
AGTGAGAGCCATAGAGTGAT+GGG - chr4_1:55811056-55811075 None:intergenic 45.0%
AAGTGAGAGCCATAGAGTGA+TGG - chr4_1:55811057-55811076 None:intergenic 45.0%
!!! ACACTTTTCAGGTGTGTCGT+TGG + chr4_1:55811244-55811263 Msa0557440:intron 45.0%
GAGCTCTCATTCAATTGGCT+CGG + chr4_1:55811278-55811297 Msa0557440:CDS 45.0%
GTGTAGGCCCTTCAATCTAT+GGG - chr4_1:55811683-55811702 None:intergenic 45.0%
AGTGTAGGCCCTTCAATCTA+TGG - chr4_1:55811684-55811703 None:intergenic 45.0%
GTATCAGATCTCTTCTGGGT+TGG + chr4_1:55811756-55811775 Msa0557440:CDS 45.0%
CACCTGGCGATGAAAAATGT+AGG - chr4_1:55811884-55811903 None:intergenic 45.0%
! CTACATTTTTCATCGCCAGG+TGG + chr4_1:55811882-55811901 Msa0557440:intron 45.0%
ACGTTTGAGTACGTTGCCAA+CGG - chr4_1:55811947-55811966 None:intergenic 45.0%
!! CTCGATCTTGGCTTTGATGA+AGG - chr4_1:55812192-55812211 None:intergenic 45.0%
CTTCATCAAAGCCAAGATCG+AGG + chr4_1:55812190-55812209 Msa0557440:CDS 45.0%
CAGCAAGCAAAAGCAGCATA+AGG + chr4_1:55812314-55812333 Msa0557440:intron 45.0%
AGACGGTTAACGAGAACCAC+AGG + chr4_1:55808285-55808304 Msa0557440:five_prime_UTR 50.0%
!! GAAGTTTGTTGAGACGAGGG+AGG - chr4_1:55808419-55808438 None:intergenic 50.0%
CATCGTGAACACCTCACCAA+TGG + chr4_1:55808438-55808457 Msa0557440:CDS 50.0%
! GATCGATTTCACGGAGAGGA+TGG - chr4_1:55808469-55808488 None:intergenic 50.0%
! ATCCGATCGATTTCACGGAG+AGG - chr4_1:55808473-55808492 None:intergenic 50.0%
TCGGATCAGTTTCTGATGGC+GGG + chr4_1:55808487-55808506 Msa0557440:CDS 50.0%
TCGTCCTGAACTCTGTTCAC+CGG + chr4_1:55808533-55808552 Msa0557440:CDS 50.0%
GTTTGCACCCCCTTTATTGC+AGG + chr4_1:55809184-55809203 Msa0557440:intron 50.0%
TATGTGTCGGACACCGAACA+CGG + chr4_1:55809313-55809332 Msa0557440:intron 50.0%
ACAACCACTCACACACGATG+TGG - chr4_1:55809433-55809452 None:intergenic 50.0%
GTGTATGTGCAGCTTCGTGT+CGG + chr4_1:55810276-55810295 Msa0557440:intron 50.0%
GGTGGGAGTGGTTTACTGTT+TGG + chr4_1:55810312-55810331 Msa0557440:CDS 50.0%
TAAGCGCGCAGTAAGTCTCT+CGG + chr4_1:55810357-55810376 Msa0557440:intron 50.0%
TTCAGCTGGTTGCCGTCTAT+TGG - chr4_1:55810791-55810810 None:intergenic 50.0%
TCACTTGCTCCCGTTGTTCT+TGG + chr4_1:55811071-55811090 Msa0557440:CDS 50.0%
TCACTCACAATTAAGGCCGG+TGG - chr4_1:55811541-55811560 None:intergenic 50.0%
AAGCCGGTCTTCAACAGTGT+AGG - chr4_1:55811699-55811718 None:intergenic 50.0%
AGCAATTGCATCAGCGAAGC+CGG - chr4_1:55811715-55811734 None:intergenic 50.0%
CACTCTCTCCAATGTGTTGG+TGG - chr4_1:55811908-55811927 None:intergenic 50.0%
CACCAACACATTGGAGAGAG+TGG + chr4_1:55811906-55811925 Msa0557440:CDS 50.0%
AGCCACTCTCTCCAATGTGT+TGG - chr4_1:55811911-55811930 None:intergenic 50.0%
AGTTCCGATACCAGTTTGGG+TGG - chr4_1:55812138-55812157 None:intergenic 50.0%
GGCAGTTCCGATACCAGTTT+GGG - chr4_1:55812141-55812160 None:intergenic 50.0%
TGGCAGTTCCGATACCAGTT+TGG - chr4_1:55812142-55812161 None:intergenic 50.0%
GGAACTGCCATTGCAATTGC+TGG + chr4_1:55812152-55812171 Msa0557440:CDS 50.0%
TGCCATTGCAATTGCTGGAG+TGG + chr4_1:55812157-55812176 Msa0557440:CDS 50.0%
TGCCACTCCAGCAATTGCAA+TGG - chr4_1:55812162-55812181 None:intergenic 50.0%
TCGCTTCTCTTCCTCGATCT+TGG - chr4_1:55812204-55812223 None:intergenic 50.0%
! AGCAGCATAAGGCGTCAACT+TGG + chr4_1:55812325-55812344 Msa0557440:exon 50.0%
! AGCATAAGGCGTCAACTTGG+AGG + chr4_1:55812328-55812347 Msa0557440:exon 50.0%
TTTGTTGAGACGAGGGAGGG+AGG - chr4_1:55808415-55808434 None:intergenic 55.0%
!! GATGGCGGGAACCTTGTCTT+TGG + chr4_1:55808501-55808520 Msa0557440:CDS 55.0%
AGAGCCGGTGAACAGAGTTC+AGG - chr4_1:55808540-55808559 None:intergenic 55.0%
ATTAAACGGACCTCACCCGG+CGG - chr4_1:55808613-55808632 None:intergenic 55.0%
CGGATTAAACGGACCTCACC+CGG - chr4_1:55808616-55808635 None:intergenic 55.0%
CAGTGGAGAGAAGGTTGCTC+CGG + chr4_1:55808693-55808712 Msa0557440:intron 55.0%
AGCCACCGAATTCTCAGGGA+CGG - chr4_1:55808944-55808963 None:intergenic 55.0%
! TCCCTGAGAATTCGGTGGCT+CGG + chr4_1:55808944-55808963 Msa0557440:intron 55.0%
TTGAGGTCCATCCTTGAGGG+AGG + chr4_1:55809236-55809255 Msa0557440:intron 55.0%
GCAAACAGCTCAACCGAGCT+GGG - chr4_1:55809262-55809281 None:intergenic 55.0%
TGCAAACAGCTCAACCGAGC+TGG - chr4_1:55809263-55809282 None:intergenic 55.0%
TGTTTGGTCAGCTGGACCGT+GGG + chr4_1:55810328-55810347 Msa0557440:CDS 55.0%
GAGAGACTTACTGCGCGCTT+AGG - chr4_1:55810358-55810377 None:intergenic 55.0%
AAGGGCCTGTTGAGCAATGC+TGG + chr4_1:55810568-55810587 Msa0557440:intron 55.0%
CGTAGCCAGCATTGCTCAAC+AGG - chr4_1:55810576-55810595 None:intergenic 55.0%
CGGGAATCAGCAACTTCAGC+TGG - chr4_1:55810805-55810824 None:intergenic 55.0%
GGGCCTACACTGTTGAAGAC+CGG + chr4_1:55811693-55811712 Msa0557440:CDS 55.0%
TTGCCAACGGCATGAGTGAG+AGG - chr4_1:55811934-55811953 None:intergenic 55.0%
!! GGATGGAAGCGCCATTGGTG+AGG - chr4_1:55808452-55808471 None:intergenic 60.0%
!! GGAGAGGATGGAAGCGCCAT+TGG - chr4_1:55808457-55808476 None:intergenic 60.0%
ACCTCACCCGGCGGAATCAT+CGG - chr4_1:55808604-55808623 None:intergenic 60.0%
GGAGAGAAGGTTGCTCCGGT+TGG + chr4_1:55808697-55808716 Msa0557440:CDS 60.0%
CAGGGCCGTCCCTGAGAATT+CGG + chr4_1:55808936-55808955 Msa0557440:intron 60.0%
GCCGAGCCACCGAATTCTCA+GGG - chr4_1:55808948-55808967 None:intergenic 60.0%
AGCCGAGCCACCGAATTCTC+AGG - chr4_1:55808949-55808968 None:intergenic 60.0%
! AGAATTCGGTGGCTCGGCTC+TGG + chr4_1:55808950-55808969 Msa0557440:intron 60.0%
! AAGGGGGTGCAAACAGCGCA+TGG - chr4_1:55809178-55809197 None:intergenic 60.0%
GAGCTGTTTGCACCCCCTCA+AGG + chr4_1:55809271-55809290 Msa0557440:intron 60.0%
TGTTTGCACCCCCTCAAGGC+CGG + chr4_1:55809275-55809294 Msa0557440:intron 60.0%
ATCATCAGGGCCGGCCTTGA+GGG - chr4_1:55809288-55809307 None:intergenic 60.0%
TATCATCAGGGCCGGCCTTG+AGG - chr4_1:55809289-55809308 None:intergenic 60.0%
CTGTTTGGTCAGCTGGACCG+TGG + chr4_1:55810327-55810346 Msa0557440:CDS 60.0%
TGCGCGCTTAGGAAGACCCA+CGG - chr4_1:55810347-55810366 None:intergenic 60.0%
!! CCAATGTGTTGGTGGCCACC+TGG - chr4_1:55811900-55811919 None:intergenic 60.0%
CCAGGTGGCCACCAACACAT+TGG + chr4_1:55811897-55811916 Msa0557440:intron 60.0%
GCTCCTCTCACTCATGCCGT+TGG + chr4_1:55811928-55811947 Msa0557440:CDS 60.0%
! AGGGAGGGAGGAGAGTGTGG+TGG - chr4_1:55808403-55808422 None:intergenic 65.0%
ACGAGGGAGGGAGGAGAGTG+TGG - chr4_1:55808406-55808425 None:intergenic 65.0%
GGCCGTCCCTGAGAATTCGG+TGG + chr4_1:55808939-55808958 Msa0557440:intron 65.0%
AGCTGGGCCTCCCTCAAGGA+TGG - chr4_1:55809246-55809265 None:intergenic 65.0%
TCCTTGAGGGAGGCCCAGCT+CGG + chr4_1:55809246-55809265 Msa0557440:intron 65.0%
TCATCAGGGCCGGCCTTGAG+GGG - chr4_1:55809287-55809306 None:intergenic 65.0%
TCATCGGCAGCGGCGAGGCA+AGG - chr4_1:55808588-55808607 None:intergenic 70.0%
CGGAATCATCGGCAGCGGCG+AGG - chr4_1:55808593-55808612 None:intergenic 70.0%
GCCGCTGCCGATGATTCCGC+CGG + chr4_1:55808594-55808613 Msa0557440:CDS 70.0%
CCCGGCGGAATCATCGGCAG+CGG - chr4_1:55808598-55808617 None:intergenic 70.0%
CCGCTGCCGATGATTCCGCC+GGG + chr4_1:55808595-55808614 Msa0557440:CDS 70.0%
GCCGATGATTCCGCCGGGTG+AGG + chr4_1:55808600-55808619 Msa0557440:intron 70.0%
ACCGAGCTGGGCCTCCCTCA+AGG - chr4_1:55809250-55809269 None:intergenic 70.0%
CATCAGGGCCGGCCTTGAGG+GGG - chr4_1:55809286-55809305 None:intergenic 70.0%
CAGCGGCGAGGCAAGGACGG+AGG - chr4_1:55808581-55808600 None:intergenic 75.0%
CGGCAGCGGCGAGGCAAGGA+CGG - chr4_1:55808584-55808603 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 55808227 55812755 55808227 ID=Msa0557440;Name=Msa0557440
chr4_1 mRNA 55808227 55812755 55808227 ID=Msa0557440-mRNA-1;Parent=Msa0557440;Name=Msa0557440-mRNA-1;_AED=0.11;_eAED=0.11;_QI=148|1|1|1|1|1|12|421|401
chr4_1 exon 55808227 55808616 55808227 ID=Msa0557440-mRNA-1:exon:16709;Parent=Msa0557440-mRNA-1
chr4_1 exon 55808696 55808770 55808696 ID=Msa0557440-mRNA-1:exon:16710;Parent=Msa0557440-mRNA-1
chr4_1 exon 55809501 55809566 55809501 ID=Msa0557440-mRNA-1:exon:16711;Parent=Msa0557440-mRNA-1
chr4_1 exon 55810288 55810366 55810288 ID=Msa0557440-mRNA-1:exon:16712;Parent=Msa0557440-mRNA-1
chr4_1 exon 55810788 55810908 55810788 ID=Msa0557440-mRNA-1:exon:16713;Parent=Msa0557440-mRNA-1
chr4_1 exon 55810997 55811092 55810997 ID=Msa0557440-mRNA-1:exon:16714;Parent=Msa0557440-mRNA-1
chr4_1 exon 55811255 55811367 55811255 ID=Msa0557440-mRNA-1:exon:16715;Parent=Msa0557440-mRNA-1
chr4_1 exon 55811475 55811552 55811475 ID=Msa0557440-mRNA-1:exon:16716;Parent=Msa0557440-mRNA-1
chr4_1 exon 55811687 55811803 55811687 ID=Msa0557440-mRNA-1:exon:16717;Parent=Msa0557440-mRNA-1
chr4_1 exon 55811901 55812000 55811901 ID=Msa0557440-mRNA-1:exon:16718;Parent=Msa0557440-mRNA-1
chr4_1 exon 55812123 55812223 55812123 ID=Msa0557440-mRNA-1:exon:16719;Parent=Msa0557440-mRNA-1
chr4_1 exon 55812317 55812755 55812317 ID=Msa0557440-mRNA-1:exon:16720;Parent=Msa0557440-mRNA-1
chr4_1 five_prime_UTR 55808227 55808374 55808227 ID=Msa0557440-mRNA-1:five_prime_utr;Parent=Msa0557440-mRNA-1
chr4_1 CDS 55808375 55808616 55808375 ID=Msa0557440-mRNA-1:cds;Parent=Msa0557440-mRNA-1
chr4_1 CDS 55808696 55808770 55808696 ID=Msa0557440-mRNA-1:cds;Parent=Msa0557440-mRNA-1
chr4_1 CDS 55809501 55809566 55809501 ID=Msa0557440-mRNA-1:cds;Parent=Msa0557440-mRNA-1
chr4_1 CDS 55810288 55810366 55810288 ID=Msa0557440-mRNA-1:cds;Parent=Msa0557440-mRNA-1
chr4_1 CDS 55810788 55810908 55810788 ID=Msa0557440-mRNA-1:cds;Parent=Msa0557440-mRNA-1
chr4_1 CDS 55810997 55811092 55810997 ID=Msa0557440-mRNA-1:cds;Parent=Msa0557440-mRNA-1
chr4_1 CDS 55811255 55811367 55811255 ID=Msa0557440-mRNA-1:cds;Parent=Msa0557440-mRNA-1
chr4_1 CDS 55811475 55811552 55811475 ID=Msa0557440-mRNA-1:cds;Parent=Msa0557440-mRNA-1
chr4_1 CDS 55811687 55811803 55811687 ID=Msa0557440-mRNA-1:cds;Parent=Msa0557440-mRNA-1
chr4_1 CDS 55811901 55812000 55811901 ID=Msa0557440-mRNA-1:cds;Parent=Msa0557440-mRNA-1
chr4_1 CDS 55812123 55812223 55812123 ID=Msa0557440-mRNA-1:cds;Parent=Msa0557440-mRNA-1
chr4_1 CDS 55812317 55812334 55812317 ID=Msa0557440-mRNA-1:cds;Parent=Msa0557440-mRNA-1
chr4_1 three_prime_UTR 55812335 55812755 55812335 ID=Msa0557440-mRNA-1:three_prime_utr;Parent=Msa0557440-mRNA-1
Gene Sequence

>Msa0557440

ATGGAGTCACGAGTGTTGTCACGCGCCACCACACTCTCCTCCCTCCCTCGTCTCAACAAACTTCATCGTGAACACCTCACCAATGGCGCTTCCATCCTCTCCGTGAAATCGATCGGATCAGTTTCTGATGGCGGGAACCTTGTCTTTGGAAGACAACTTCGTCCTGAACTCTGTTCACCGGCTCTTAAGAAAAGTGGTGTACTCCTCCGTCCTTGCCTCGCCGCTGCCGATGATTCCGCCGGTGGAGAGAAGGTTGCTCCGGTTGGATTCTTTAGCAAGTATCCGGCTCTTACTACCGGTTTTTTCTTCTTCACTTGGTACTTTTTGAATGTGATTTTCAACATCCTCAACAAGAAGATCTATAATTATTTCCCCTATCCTTACTTCGTGTCGGTTATCCATTTATTGGTGGGAGTGGTTTACTGTTTGGTCAGCTGGACCGTGGGTCTTCCTAAGCGCGCACCAATAGACGGCAACCAGCTGAAGTTGCTGATTCCCGTAGCTGTGTGTCATGCATTAGGCCATGTGACCAGCAATGTCTCATTTGCTGCAGTTGCTGTTTCTTTCACACATACCATCAAAGCTCTTGAGCCATTCTTTAATGCTGCTGCTTCACAATTCATACTTGGACAATCAATTCCCATCACTCTATGGCTCTCACTTGCTCCCGTTGTTCTTGGTGTGTCGTTGGCATCATTGACTGAGCTCTCATTCAATTGGCTCGGCTTCATAAGTGCTATGATTTCAAACATTTCATTTACATACAGGAGTATCTATTCAAAGAAAGCCATGACTGATATGGACAGTACCAATGTCTATGCCTACATTTCCATCATTGCTCTAATTGTCTGCATACCACCGGCCTTAATTATTGAAGGGCCTACACTGTTGAAGACCGGCTTCGCTGATGCAATTGCTAAAGTAGGTTTGGTCAAATTCGTATCAGATCTCTTCTGGGTTGGTATGTTTTACCATCTCTACAACCAGGTGGCCACCAACACATTGGAGAGAGTGGCTCCTCTCACTCATGCCGTTGGCAACGTACTCAAACGTGTATTTGTCATTGGATTTTCAATCATTATCTTCGGTAACAAGATTTCCACCCAAACTGGTATCGGAACTGCCATTGCAATTGCTGGAGTGGCACTCTACTCCTTCATCAAAGCCAAGATCGAGGAAGAGAAGCGACAAGCAAAAGCAGCATAA

Protein sequence

>Msa0557440

MESRVLSRATTLSSLPRLNKLHREHLTNGASILSVKSIGSVSDGGNLVFGRQLRPELCSPALKKSGVLLRPCLAAADDSAGGEKVAPVGFFSKYPALTTGFFFFTWYFLNVIFNILNKKIYNYFPYPYFVSVIHLLVGVVYCLVSWTVGLPKRAPIDGNQLKLLIPVAVCHALGHVTSNVSFAAVAVSFTHTIKALEPFFNAAASQFILGQSIPITLWLSLAPVVLGVSLASLTELSFNWLGFISAMISNISFTYRSIYSKKAMTDMDSTNVYAYISIIALIVCIPPALIIEGPTLLKTGFADAIAKVGLVKFVSDLFWVGMFYHLYNQVATNTLERVAPLTHAVGNVLKRVFVIGFSIIIFGNKISTQTGIGTAIAIAGVALYSFIKAKIEEEKRQAKAA*