Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0317640 | XP_003594400.1 | 93.032 | 531 | 10 | 1 | 1 | 531 | 1 | 504 | 0.0 | 926 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0317640 | sp|Q9Y805|CWC25_SCHPO | 36.076 | 158 | 86 | 5 | 1 | 148 | 1 | 153 | 4.55e-13 | 74.3 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0002560 | Msa0317640 | 0.805161 | 1.525882e-49 | -8.615850e-47 |
| Msa0003220 | Msa0317640 | 0.800491 | 1.406022e-48 | -8.615850e-47 |
| Msa0008220 | Msa0317640 | 0.810384 | 1.184174e-50 | -8.615850e-47 |
| Msa0010770 | Msa0317640 | 0.807332 | 5.322949e-50 | -8.615850e-47 |
| Msa0012710 | Msa0317640 | 0.820409 | 6.966719e-53 | -8.615850e-47 |
| Msa0017320 | Msa0317640 | 0.802691 | 4.974596e-49 | -8.615850e-47 |
| Msa0033880 | Msa0317640 | 0.812838 | 3.465187e-51 | -8.615850e-47 |
| Msa0039250 | Msa0317640 | 0.807060 | 6.078057e-50 | -8.615850e-47 |
| Msa0043500 | Msa0317640 | 0.834640 | 2.667263e-56 | -8.615850e-47 |
| Msa0043650 | Msa0317640 | 0.819270 | 1.268132e-52 | -8.615850e-47 |
| Msa0047250 | Msa0317640 | 0.810059 | 1.391490e-50 | -8.615850e-47 |
| Msa0057370 | Msa0317640 | 0.808777 | 2.621945e-50 | -8.615850e-47 |
| Msa0070430 | Msa0317640 | 0.805581 | 1.245546e-49 | -8.615850e-47 |
| Msa0074750 | Msa0317640 | 0.810736 | 9.936278e-51 | -8.615850e-47 |
| Msa0076780 | Msa0317640 | 0.807327 | 5.335392e-50 | -8.615850e-47 |
| Msa0077900 | Msa0317640 | 0.803790 | 2.945823e-49 | -8.615850e-47 |
| Msa0092440 | Msa0317640 | 0.802423 | 5.650984e-49 | -8.615850e-47 |
| Msa0096580 | Msa0317640 | 0.811671 | 6.230745e-51 | -8.615850e-47 |
| Msa0097950 | Msa0317640 | 0.839657 | 1.389655e-57 | -8.615850e-47 |
| Msa0108870 | Msa0317640 | 0.856734 | 2.632693e-62 | -8.615850e-47 |
| Msa0126770 | Msa0317640 | 0.825283 | 5.100330e-54 | -8.615850e-47 |
| Msa0127040 | Msa0317640 | 0.811133 | 8.152985e-51 | -8.615850e-47 |
| Msa0127850 | Msa0317640 | 0.815326 | 9.791148e-52 | -8.615850e-47 |
| Msa0131450 | Msa0317640 | 0.807794 | 4.246564e-50 | -8.615850e-47 |
| Msa0133720 | Msa0317640 | 0.810249 | 1.266123e-50 | -8.615850e-47 |
| Msa0133820 | Msa0317640 | 0.809714 | 1.650377e-50 | -8.615850e-47 |
| Msa0138210 | Msa0317640 | 0.817575 | 3.070997e-52 | -8.615850e-47 |
| Msa0145150 | Msa0317640 | 0.811037 | 8.551888e-51 | -8.615850e-47 |
| Msa0146080 | Msa0317640 | 0.810646 | 1.039516e-50 | -8.615850e-47 |
| Msa0155330 | Msa0317640 | 0.801526 | 8.637897e-49 | -8.615850e-47 |
| Msa0156230 | Msa0317640 | 0.814291 | 1.660683e-51 | -8.615850e-47 |
| Msa0165300 | Msa0317640 | 0.804697 | 1.907232e-49 | -8.615850e-47 |
| Msa0171850 | Msa0317640 | 0.813629 | 2.323192e-51 | -8.615850e-47 |
| Msa0171980 | Msa0317640 | 0.810578 | 1.075301e-50 | -8.615850e-47 |
| Msa0174000 | Msa0317640 | 0.820692 | 5.995918e-53 | -8.615850e-47 |
| Msa0177230 | Msa0317640 | 0.808204 | 3.474263e-50 | -8.615850e-47 |
| Msa0193540 | Msa0317640 | 0.807993 | 3.852260e-50 | -8.615850e-47 |
| Msa0198520 | Msa0317640 | 0.851539 | 8.308892e-61 | -8.615850e-47 |
| Msa0198530 | Msa0317640 | 0.846261 | 2.427027e-59 | -8.615850e-47 |
| Msa0202930 | Msa0317640 | 0.811126 | 8.183797e-51 | -8.615850e-47 |
| Msa0221600 | Msa0317640 | 0.825628 | 4.226571e-54 | -8.615850e-47 |
| Msa0236070 | Msa0317640 | 0.806317 | 8.725296e-50 | -8.615850e-47 |
| Msa0237200 | Msa0317640 | 0.812757 | 3.611204e-51 | -8.615850e-47 |
| Msa0238030 | Msa0317640 | 0.804361 | 2.240950e-49 | -8.615850e-47 |
| Msa0242760 | Msa0317640 | 0.803059 | 4.175856e-49 | -8.615850e-47 |
| Msa0247060 | Msa0317640 | 0.815167 | 1.061937e-51 | -8.615850e-47 |
| Msa0273650 | Msa0317640 | 0.801139 | 1.036517e-48 | -8.615850e-47 |
| Msa0274100 | Msa0317640 | 0.801518 | 8.668760e-49 | -8.615850e-47 |
| Msa0317640 | Msa0322590 | 0.815155 | 1.068799e-51 | -8.615850e-47 |
| Msa0317640 | Msa0322680 | 0.812943 | 3.287188e-51 | -8.615850e-47 |
| Msa0317640 | Msa0324240 | 0.819289 | 1.255628e-52 | -8.615850e-47 |
| Msa0317640 | Msa0336490 | 0.808746 | 2.661247e-50 | -8.615850e-47 |
| Msa0317640 | Msa0342290 | 0.820347 | 7.195649e-53 | -8.615850e-47 |
| Msa0317640 | Msa0346990 | 0.816929 | 4.291100e-52 | -8.615850e-47 |
| Msa0317640 | Msa0347120 | 0.821769 | 3.385116e-53 | -8.615850e-47 |
| Msa0317640 | Msa0347990 | 0.803088 | 4.119562e-49 | -8.615850e-47 |
| Msa0317640 | Msa0378970 | 0.813284 | 2.766607e-51 | -8.615850e-47 |
| Msa0317640 | Msa0381080 | 0.800997 | 1.108339e-48 | -8.615850e-47 |
| Msa0317640 | Msa0392200 | 0.816871 | 4.422129e-52 | -8.615850e-47 |
| Msa0317640 | Msa0394690 | 0.830153 | 3.446586e-55 | -8.615850e-47 |
| Msa0317640 | Msa0439890 | 0.818307 | 2.098787e-52 | -8.615850e-47 |
| Msa0317640 | Msa0473980 | 0.814786 | 1.290518e-51 | -8.615850e-47 |
| Msa0317640 | Msa0474700 | 0.812660 | 3.792061e-51 | -8.615850e-47 |
| Msa0317640 | Msa0478580 | 0.810866 | 9.313235e-51 | -8.615850e-47 |
| Msa0317640 | Msa0479330 | 0.808206 | 3.470501e-50 | -8.615850e-47 |
| Msa0317640 | Msa0480780 | 0.814263 | 1.684256e-51 | -8.615850e-47 |
| Msa0317640 | Msa0487780 | 0.802398 | 5.718228e-49 | -8.615850e-47 |
| Msa0317640 | Msa0514610 | 0.813874 | 2.052470e-51 | -8.615850e-47 |
| Msa0317640 | Msa0516020 | 0.800950 | 1.132908e-48 | -8.615850e-47 |
| Msa0317640 | Msa0516120 | 0.807904 | 4.024257e-50 | -8.615850e-47 |
| Msa0317640 | Msa0527910 | 0.807254 | 5.529697e-50 | -8.615850e-47 |
| Msa0317640 | Msa0537770 | 0.806928 | 6.480714e-50 | -8.615850e-47 |
| Msa0317640 | Msa0549590 | 0.800974 | 1.120225e-48 | -8.615850e-47 |
| Msa0317640 | Msa0550570 | 0.819984 | 8.717214e-53 | -8.615850e-47 |
| Msa0317640 | Msa0578090 | 0.804098 | 2.543062e-49 | -8.615850e-47 |
| Msa0317640 | Msa0583500 | 0.800939 | 1.138965e-48 | -8.615850e-47 |
| Msa0317640 | Msa0606810 | 0.802883 | 4.540488e-49 | -8.615850e-47 |
| Msa0317640 | Msa0618950 | 0.805410 | 1.352963e-49 | -8.615850e-47 |
| Msa0317640 | Msa0619920 | 0.811454 | 6.944227e-51 | -8.615850e-47 |
| Msa0317640 | Msa0620330 | 0.807778 | 4.280728e-50 | -8.615850e-47 |
| Msa0317640 | Msa0646130 | 0.818530 | 1.868352e-52 | -8.615850e-47 |
| Msa0317640 | Msa0652690 | 0.806114 | 9.625101e-50 | -8.615850e-47 |
| Msa0317640 | Msa0659790 | 0.816358 | 5.762320e-52 | -8.615850e-47 |
| Msa0317640 | Msa0659990 | 0.820045 | 8.439471e-53 | -8.615850e-47 |
| Msa0317640 | Msa0686080 | 0.801934 | 7.123046e-49 | -8.615850e-47 |
| Msa0317640 | Msa0705390 | 0.811037 | 8.551888e-51 | -8.615850e-47 |
| Msa0317640 | Msa0713320 | 0.819007 | 1.455699e-52 | -8.615850e-47 |
| Msa0317640 | Msa0732600 | 0.801945 | 7.085422e-49 | -8.615850e-47 |
| Msa0317640 | Msa0743530 | 0.825301 | 5.051582e-54 | -8.615850e-47 |
| Msa0317640 | Msa0744100 | 0.814278 | 1.671357e-51 | -8.615850e-47 |
| Msa0317640 | Msa0756930 | 0.808909 | 2.456635e-50 | -8.615850e-47 |
| Msa0317640 | Msa0766670 | 0.806732 | 7.129577e-50 | -8.615850e-47 |
| Msa0317640 | Msa0781270 | 0.816342 | 5.811261e-52 | -8.615850e-47 |
| Msa0317640 | Msa0795660 | 0.840651 | 7.646523e-58 | -8.615850e-47 |
| Msa0317640 | Msa0814630 | -0.803012 | 4.270480e-49 | -8.615850e-47 |
| Msa0317640 | Msa0821800 | 0.809206 | 2.121733e-50 | -8.615850e-47 |
| Msa0317640 | Msa0822170 | 0.807754 | 4.331150e-50 | -8.615850e-47 |
| Msa0317640 | Msa0825270 | 0.815922 | 7.213490e-52 | -8.615850e-47 |
| Msa0317640 | Msa0825280 | 0.800850 | 1.187884e-48 | -8.615850e-47 |
| Msa0317640 | Msa0849810 | 0.800783 | 1.225749e-48 | -8.615850e-47 |
| Msa0317640 | Msa0861830 | 0.824399 | 8.244058e-54 | -8.615850e-47 |
| Msa0317640 | Msa0869010 | 0.817561 | 3.093571e-52 | -8.615850e-47 |
| Msa0317640 | Msa0870650 | 0.808262 | 3.376980e-50 | -8.615850e-47 |
| Msa0317640 | Msa0873860 | 0.810393 | 1.178997e-50 | -8.615850e-47 |
| Msa0317640 | Msa0932350 | 0.822660 | 2.103783e-53 | -8.615850e-47 |
| Msa0317640 | Msa0945240 | 0.814537 | 1.464834e-51 | -8.615850e-47 |
| Msa0317640 | Msa0969330 | 0.816369 | 5.731160e-52 | -8.615850e-47 |
| Msa0317640 | Msa0970320 | 0.815032 | 1.137678e-51 | -8.615850e-47 |
| Msa0317640 | Msa0975940 | 0.808758 | 2.646441e-50 | -8.615850e-47 |
| Msa0317640 | Msa0980940 | 0.815765 | 7.815864e-52 | -8.615850e-47 |
| Msa0317640 | Msa0981430 | 0.812861 | 3.425793e-51 | -8.615850e-47 |
| Msa0317640 | Msa1010460 | 0.823514 | 1.329879e-53 | -8.615850e-47 |
| Msa0317640 | Msa1025940 | 0.801333 | 9.462184e-49 | -8.615850e-47 |
| Msa0317640 | Msa1031820 | 0.804456 | 2.141320e-49 | -8.615850e-47 |
| Msa0317640 | Msa1036740 | 0.813098 | 3.039897e-51 | -8.615850e-47 |
| Msa0317640 | Msa1048750 | -0.807716 | 4.411960e-50 | -8.615850e-47 |
| Msa0317640 | Msa1068390 | 0.802631 | 5.120139e-49 | -8.615850e-47 |
| Msa0317640 | Msa1070390 | 0.825050 | 5.789886e-54 | -8.615850e-47 |
| Msa0317640 | Msa1098890 | 0.818058 | 2.389175e-52 | -8.615850e-47 |
| Msa0317640 | Msa1100520 | -0.804720 | 1.886561e-49 | -8.615850e-47 |
| Msa0317640 | Msa1113590 | 0.817927 | 2.557643e-52 | -8.615850e-47 |
| Msa0317640 | Msa1127430 | 0.804123 | 2.512428e-49 | -8.615850e-47 |
| Msa0317640 | Msa1128330 | 0.809341 | 1.985161e-50 | -8.615850e-47 |
| Msa0317640 | Msa1130530 | 0.816153 | 6.403225e-52 | -8.615850e-47 |
| Msa0317640 | Msa1133400 | 0.805366 | 1.382054e-49 | -8.615850e-47 |
| Msa0317640 | Msa1158230 | 0.811250 | 7.689795e-51 | -8.615850e-47 |
| Msa0317640 | Msa1162080 | 0.804404 | 2.195891e-49 | -8.615850e-47 |
| Msa0317640 | Msa1164020 | 0.823975 | 1.037142e-53 | -8.615850e-47 |
| Msa0317640 | Msa1176270 | 0.813212 | 2.869116e-51 | -8.615850e-47 |
| Msa0317640 | Msa1176980 | 0.836253 | 1.042857e-56 | -8.615850e-47 |
| Msa0317640 | Msa1179980 | 0.801876 | 7.320068e-49 | -8.615850e-47 |
| Msa0317640 | Msa1181170 | -0.814051 | 1.875508e-51 | -8.615850e-47 |
| Msa0317640 | Msa1206650 | 0.802767 | 4.799690e-49 | -8.615850e-47 |
| Msa0317640 | Msa1211340 | 0.804159 | 2.468844e-49 | -8.615850e-47 |
| Msa0317640 | Msa1270690 | 0.801744 | 7.793241e-49 | -8.615850e-47 |
| Msa0317640 | Msa1280620 | 0.827259 | 1.726920e-54 | -8.615850e-47 |
| Msa0317640 | Msa1286550 | 0.819042 | 1.429063e-52 | -8.615850e-47 |
| Msa0317640 | Msa1296300 | 0.814742 | 1.319808e-51 | -8.615850e-47 |
| Msa0317640 | Msa1306390 | 0.801060 | 1.075845e-48 | -8.615850e-47 |
| Msa0317640 | Msa1317270 | 0.807545 | 4.796463e-50 | -8.615850e-47 |
| Msa0317640 | Msa1320820 | 0.849921 | 2.371056e-60 | -8.615850e-47 |
| Msa0317640 | Msa1329450 | 0.808071 | 3.708445e-50 | -8.615850e-47 |
| Msa0317640 | Msa1329790 | 0.800756 | 1.241079e-48 | -8.615850e-47 |
| Msa0317640 | Msa1341490 | 0.805673 | 1.191426e-49 | -8.615850e-47 |
| Msa0317640 | Msa1344310 | 0.815040 | 1.133293e-51 | -8.615850e-47 |
| Msa0317640 | Msa1357080 | 0.817721 | 2.847819e-52 | -8.615850e-47 |
| Msa0317640 | Msa1359560 | 0.802709 | 4.933684e-49 | -8.615850e-47 |
| Msa0317640 | Msa1389850 | 0.801814 | 7.537680e-49 | -8.615850e-47 |
| Msa0317640 | Msa1409260 | 0.804755 | 1.854844e-49 | -8.615850e-47 |
| Msa0317640 | Msa1416260 | 0.812410 | 4.299250e-51 | -8.615850e-47 |
| Msa0317640 | Msa1426570 | 0.810801 | 9.623404e-51 | -8.615850e-47 |
| Msa0317640 | Msa1437210 | 0.803050 | 4.193846e-49 | -8.615850e-47 |
| Msa0317640 | Msa1462470 | 0.823192 | 1.580945e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0317640 | MtrunA17_Chr2g0291211 | 93.032 | 531 | 10 | 1 | 1 | 531 | 1 | 504 | 0.0 | 926 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0317640 | AT2G44200.1 | 74.556 | 169 | 39 | 2 | 1 | 165 | 1 | 169 | 6.70e-79 | 256 |
| Msa0317640 | AT2G44195.1 | 54.422 | 147 | 47 | 4 | 1 | 144 | 1 | 130 | 1.56e-40 | 144 |
Find 106 sgRNAs with CRISPR-Local
Find 252 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AACAAAATCCGACGTCAAAA+TGG | 0.199594 | 2_4:-15554061 | Msa0317640:exon |
| TCAAAATTGGACTGACCTTC+TGG | 0.234421 | 2_4:+15550990 | None:intergenic |
| ACCTTCATCTTCTGCTTCTA+AGG | 0.253394 | 2_4:-15553624 | Msa0317640:intron |
| GCATCTGTTGGATCGGATTT+AGG | 0.257562 | 2_4:+15553647 | None:intergenic |
| TTCGGAACATTGAAAATGTT+TGG | 0.269490 | 2_4:-15553996 | Msa0317640:CDS |
| TCCCACTAGAACTGGTGTTC+TGG | 0.272693 | 2_4:+15550739 | None:intergenic |
| GCTTTGACTCCGGTGGTGAC+TGG | 0.293213 | 2_4:+15551184 | None:intergenic |
| CAGATCTGCCTTGAGAATAA+TGG | 0.299472 | 2_4:+15550628 | None:intergenic |
| TTCTAGTGGGAAGAATTTCT+TGG | 0.315758 | 2_4:-15550727 | Msa0317640:CDS |
| CTGATCATGGCCATCTTGAC+AGG | 0.327002 | 2_4:+15553317 | None:intergenic |
| TAGCAGGATGCAAGTGTTCC+TGG | 0.338357 | 2_4:-15553458 | Msa0317640:intron |
| GATGTCTCTAAAAGGGGAAA+TGG | 0.339059 | 2_4:-15550969 | Msa0317640:CDS |
| CTCAATCTGCTAATGATTCT+TGG | 0.352391 | 2_4:-15553415 | Msa0317640:CDS |
| ACATTGCAGAAAGGAGAAAA+AGG | 0.353510 | 2_4:-15551586 | Msa0317640:CDS |
| CCTTTCAGCAATGTCATCTT+CGG | 0.363695 | 2_4:+15551346 | None:intergenic |
| GCTTTGACTCTGGTGATGAC+TGG | 0.368357 | 2_4:+15551082 | None:intergenic |
| AGATCTGCCTTGAGAATAAT+GGG | 0.400539 | 2_4:+15550629 | None:intergenic |
| CCTTTCGGTAATGTCATCTT+CGG | 0.403954 | 2_4:+15551514 | None:intergenic |
| CTTGTCAAGGTCTTCATCAC+TGG | 0.406063 | 2_4:+15551478 | None:intergenic |
| CTTGTCAAGGTCTTCATCAC+TGG | 0.406063 | 2_4:+15551562 | None:intergenic |
| GGAGCATATCTTCCTGACTT+TGG | 0.418274 | 2_4:+15551011 | None:intergenic |
| CTTGTCAAGGTCTTCATCAA+TGG | 0.424681 | 2_4:+15551310 | None:intergenic |
| CATTATTCTCAAGGCAGATC+TGG | 0.426795 | 2_4:-15550627 | Msa0317640:CDS |
| TATGATTCGCCAGCGGGAAC+AGG | 0.432439 | 2_4:-15553366 | Msa0317640:CDS |
| CTTTGACTCCGGTGGTGACT+GGG | 0.443059 | 2_4:+15551185 | None:intergenic |
| CAAGCGCTTCCTGTTCCCGC+TGG | 0.444956 | 2_4:+15553357 | None:intergenic |
| AATGATAATAAGCCAAAGTC+AGG | 0.446428 | 2_4:-15551023 | Msa0317640:CDS |
| TAAAACATCTGAAGGTTTCA+AGG | 0.450452 | 2_4:-15553684 | Msa0317640:CDS |
| CTCTCTTCTTCTGAAAGCTT+AGG | 0.457506 | 2_4:+15550864 | None:intergenic |
| GAAATTCTTCCCACTAGAAC+TGG | 0.458737 | 2_4:+15550731 | None:intergenic |
| CTTTGACTCTGGTGATGACT+GGG | 0.461334 | 2_4:+15551083 | None:intergenic |
| CTTGCTTATGATTCGCCAGC+GGG | 0.464554 | 2_4:-15553372 | Msa0317640:CDS |
| GATGGCCATGATCAGAAAAT+CGG | 0.465887 | 2_4:-15553309 | Msa0317640:intron |
| CTTTGACTTTGCTTTGACTC+CGG | 0.466375 | 2_4:+15551174 | None:intergenic |
| ACAAAATCCGACGTCAAAAT+GGG | 0.466615 | 2_4:-15554060 | Msa0317640:exon |
| ATGAATCAAGTGAAGGAGAA+AGG | 0.467832 | 2_4:-15551256 | Msa0317640:CDS |
| TGGTAACAATGTCAGGTTGA+AGG | 0.472127 | 2_4:-15551704 | Msa0317640:intron |
| ATGTCTCTAAAAGGGGAAAT+GGG | 0.478643 | 2_4:-15550968 | Msa0317640:CDS |
| CAAGAATCATTAGCAGATTG+AGG | 0.486674 | 2_4:+15553416 | None:intergenic |
| CCTTGTGACGCTTCTTGTCA+AGG | 0.487865 | 2_4:+15551297 | None:intergenic |
| CCTTGTGACGCTTCTTGTCA+AGG | 0.487865 | 2_4:+15551549 | None:intergenic |
| TCGATTTGATTGCAGTCACC+AGG | 0.490832 | 2_4:-15553747 | Msa0317640:intron |
| GGCTGAGGAGACTGATGCAC+AGG | 0.492502 | 2_4:-15550769 | Msa0317640:CDS |
| TGTTCCTGGAGCTTTATTTG+AGG | 0.492824 | 2_4:-15553444 | Msa0317640:CDS |
| TCCGTTGGTAAAACATCTGA+AGG | 0.495300 | 2_4:-15553692 | Msa0317640:CDS |
| CCTTGCGACGCTTCTTGTCA+AGG | 0.500908 | 2_4:+15551465 | None:intergenic |
| GTTGGCACACGGGAAGTCTT+CGG | 0.502831 | 2_4:-15554014 | Msa0317640:CDS |
| TTCTCCTCAAATAAAGCTCC+AGG | 0.507556 | 2_4:+15553440 | None:intergenic |
| CCTTGCGATGCTTCTTGTCA+AGG | 0.508268 | 2_4:+15551381 | None:intergenic |
| TACGATTCGGGATTATCCGT+TGG | 0.508802 | 2_4:-15553707 | Msa0317640:CDS |
| GAAGAAAGATCACAGTAAGA+AGG | 0.512623 | 2_4:-15551669 | Msa0317640:CDS |
| GCAGAAGATCTAGTAGAGCT+TGG | 0.513970 | 2_4:+15550933 | None:intergenic |
| GAAGATGAAGGTGCATCTGT+TGG | 0.515053 | 2_4:+15553635 | None:intergenic |
| GAGGTGAAGGCAATGCATTT+AGG | 0.517668 | 2_4:-15550605 | Msa0317640:CDS |
| AAGAGAGGGCTGCTAAACTT+AGG | 0.529004 | 2_4:-15550848 | Msa0317640:CDS |
| GAGAATAATGGGTCCGCCGT+CGG | 0.532495 | 2_4:+15550640 | None:intergenic |
| TTGCAGTCACCAGGAGAGGT+TGG | 0.533295 | 2_4:-15553738 | Msa0317640:intron |
| AGTATATATGGTGCTGCAGA+AGG | 0.535345 | 2_4:-15550690 | Msa0317640:CDS |
| AGTTACATGAAGGGGAGAGA+TGG | 0.541273 | 2_4:-15550806 | Msa0317640:CDS |
| CTTGCTGCTGAGTTACATGA+AGG | 0.544624 | 2_4:-15550816 | Msa0317640:CDS |
| TGATCATGGCCATCTTGACA+GGG | 0.549411 | 2_4:+15553318 | None:intergenic |
| TTGAAGATGACATTGCAGAA+AGG | 0.549657 | 2_4:-15551430 | Msa0317640:CDS |
| ATCCAGAACACCAGTTCTAG+TGG | 0.551995 | 2_4:-15550741 | Msa0317640:CDS |
| CAAGGCAGATCTGGAGGTGA+AGG | 0.555173 | 2_4:-15550618 | Msa0317640:CDS |
| TATATGGTGCTGCAGAAGGC+GGG | 0.561778 | 2_4:-15550686 | Msa0317640:CDS |
| ACAATGTCAGGTTGAAGGAA+AGG | 0.564296 | 2_4:-15551699 | Msa0317640:intron |
| AATCTGCTAATGATTCTTGG+AGG | 0.575277 | 2_4:-15553412 | Msa0317640:CDS |
| TGCTGCTGAGTTACATGAAG+GGG | 0.576125 | 2_4:-15550814 | Msa0317640:CDS |
| GAGATGGAAACGTATAAAGA+AGG | 0.576882 | 2_4:-15550790 | Msa0317640:CDS |
| GAGAAGATGCTGATAACAGA+AGG | 0.581478 | 2_4:-15551145 | Msa0317640:CDS |
| GGTCCGCCGTCGGACACTCT+CGG | 0.582668 | 2_4:+15550650 | None:intergenic |
| CTAAGCTTTCAGAAGAAGAG+AGG | 0.584587 | 2_4:-15550863 | Msa0317640:CDS |
| CAGACGATGACATTGCAGAA+AGG | 0.584856 | 2_4:-15551595 | Msa0317640:CDS |
| TTGATTGCAGTCACCAGGAG+AGG | 0.587426 | 2_4:-15553742 | Msa0317640:intron |
| CCGAAGATGACATTGCTGAA+AGG | 0.588334 | 2_4:-15551346 | Msa0317640:CDS |
| TGAAGGTGCATCTGTTGGAT+CGG | 0.591413 | 2_4:+15553640 | None:intergenic |
| TCAGAGAATGAATCAAGTGA+AGG | 0.591449 | 2_4:-15551263 | Msa0317640:CDS |
| AAAGATCTCCCAGTCACCAC+CGG | 0.592015 | 2_4:-15551193 | Msa0317640:CDS |
| TAAGCTTTCAGAAGAAGAGA+GGG | 0.592365 | 2_4:-15550862 | Msa0317640:CDS |
| AAAGGAACCCGACCCATTTG+GGG | 0.593130 | 2_4:-15554205 | None:intergenic |
| ACCTTAGAAGCAGAAGATGA+AGG | 0.594556 | 2_4:+15553623 | None:intergenic |
| CGGCGGACCCATTATTCTCA+AGG | 0.596299 | 2_4:-15550636 | Msa0317640:CDS |
| CGCTGGCGAATCATAAGCAA+GGG | 0.600210 | 2_4:+15553374 | None:intergenic |
| ATATATGGTGCTGCAGAAGG+CGG | 0.601071 | 2_4:-15550687 | Msa0317640:CDS |
| TGACTTTGCTTTGACTCCGG+TGG | 0.602283 | 2_4:+15551177 | None:intergenic |
| ACACTATAAGCGGAGAAATG+TGG | 0.603511 | 2_4:-15550889 | Msa0317640:CDS |
| GAAACGTATAAAGAAGGCTG+AGG | 0.613175 | 2_4:-15550784 | Msa0317640:CDS |
| GACGTGAATCACACTATAAG+CGG | 0.618815 | 2_4:-15550899 | Msa0317640:CDS |
| CCGCTGGCGAATCATAAGCA+AGG | 0.621905 | 2_4:+15553373 | None:intergenic |
| TATTCTCAAGGCAGATCTGG+AGG | 0.626200 | 2_4:-15550624 | Msa0317640:CDS |
| AGATCTTCTGCTAATTCACT+CGG | 0.626705 | 2_4:-15550921 | Msa0317640:CDS |
| TCCAGAACACCAGTTCTAGT+GGG | 0.635808 | 2_4:-15550740 | Msa0317640:CDS |
| CCTTGACAAGAAGCGTCGCA+AGG | 0.636922 | 2_4:-15551465 | Msa0317640:CDS |
| TTGCTGCTGAGTTACATGAA+GGG | 0.639588 | 2_4:-15550815 | Msa0317640:CDS |
| TCAGGAAGATATGCTCCAGA+AGG | 0.642763 | 2_4:-15551005 | Msa0317640:CDS |
| CCTTGACAAGAAGCGTCACA+AGG | 0.649341 | 2_4:-15551297 | Msa0317640:CDS |
| CCTTGACAAGAAGCGTCACA+AGG | 0.649341 | 2_4:-15551549 | Msa0317640:CDS |
| CATCACCAGAGTCAAAGCAA+AGG | 0.652067 | 2_4:-15551077 | Msa0317640:CDS |
| CCTTGCTTATGATTCGCCAG+CGG | 0.663978 | 2_4:-15553373 | Msa0317640:CDS |
| CCTTGACAAGAAGCATCGCA+AGG | 0.666728 | 2_4:-15551381 | Msa0317640:CDS |
| CCGAAGATGACATTACCGAA+AGG | 0.667091 | 2_4:-15551514 | Msa0317640:CDS |
| TAGCCGAGAGTGTCCGACGG+CGG | 0.678820 | 2_4:-15550653 | Msa0317640:CDS |
| GGAAGAGTAATTACGGAACG+AGG | 0.683260 | 2_4:+15553863 | None:intergenic |
| GTGAAGGCAATGCATTTAGG+CGG | 0.692431 | 2_4:-15550602 | Msa0317640:CDS |
| AAGGAACCCGACCCATTTGG+GGG | 0.706421 | 2_4:-15554204 | None:intergenic |
| CAATAGCCGAGAGTGTCCGA+CGG | 0.714276 | 2_4:-15550656 | Msa0317640:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTATTAAATTATGTTACA+TGG | - | chr2_4:15552173-15552192 | Msa0317640:intron | 10.0% |
| !!! | TATGAAATTTTTGAACAAAA+AGG | - | chr2_4:15550752-15550771 | Msa0317640:CDS | 15.0% |
| !!! | ATGAAATTTTTGAACAAAAA+GGG | - | chr2_4:15550753-15550772 | Msa0317640:CDS | 15.0% |
| !! | TAAAAATTGAGAATTGAATT+GGG | + | chr2_4:15550952-15550971 | None:intergenic | 15.0% |
| !! | ATAAAAATTGAGAATTGAAT+TGG | + | chr2_4:15550953-15550972 | None:intergenic | 15.0% |
| !!! | ATTCAATTCTCAATTTTTAT+TGG | - | chr2_4:15550953-15550972 | Msa0317640:CDS | 15.0% |
| !! | TAAAAATCCAAAAGAAAAAA+AGG | + | chr2_4:15551510-15551529 | None:intergenic | 15.0% |
| !! | AAAAATTGAGAATTGAATTG+GGG | + | chr2_4:15550951-15550970 | None:intergenic | 20.0% |
| !!! | AAATCCCAAATTGATTTTTT+AGG | - | chr2_4:15550978-15550997 | Msa0317640:CDS | 20.0% |
| !!! | AATCCCAAATTGATTTTTTA+GGG | - | chr2_4:15550979-15550998 | Msa0317640:CDS | 20.0% |
| !! | TAACCCTAAAAAATCAATTT+GGG | + | chr2_4:15550985-15551004 | None:intergenic | 20.0% |
| !!! | AAATTGATTTTTTAGGGTTA+GGG | - | chr2_4:15550985-15551004 | Msa0317640:CDS | 20.0% |
| !! | CAGAAAAGAAAAAAAATCAT+TGG | + | chr2_4:15551212-15551231 | None:intergenic | 20.0% |
| !!! | TGTTGATTGAATTTGAATTT+AGG | - | chr2_4:15551264-15551283 | Msa0317640:CDS | 20.0% |
| !! | GTTGATTGAATTTGAATTTA+GGG | - | chr2_4:15551265-15551284 | Msa0317640:CDS | 20.0% |
| !! | TAGATAGATACTGTTTAATT+TGG | - | chr2_4:15551867-15551886 | Msa0317640:intron | 20.0% |
| !!! | AGATAGATACTGTTTAATTT+GGG | - | chr2_4:15551868-15551887 | Msa0317640:intron | 20.0% |
| !! | GAAAATAAAATTGAATCAGA+AGG | + | chr2_4:15552626-15552645 | None:intergenic | 20.0% |
| !! | TTATAAGCAACATAATTTCA+TGG | + | chr2_4:15552944-15552963 | None:intergenic | 20.0% |
| !! | TTAAATTGCATTTACTAATC+AGG | - | chr2_4:15553024-15553043 | Msa0317640:intron | 20.0% |
| !!! | AAACAACTGTTTCTAATTTA+TGG | - | chr2_4:15553054-15553073 | Msa0317640:intron | 20.0% |
| !!! | TTGTTTTGATCGATTGATTT+TGG | + | chr2_4:15550713-15550732 | None:intergenic | 25.0% |
| !! | AATTTTTGAACAAAAAGGGT+TGG | - | chr2_4:15550757-15550776 | Msa0317640:CDS | 25.0% |
| ! | AAAATTGAGAATTGAATTGG+GGG | + | chr2_4:15550950-15550969 | None:intergenic | 25.0% |
| ! | CTAACCCTAAAAAATCAATT+TGG | + | chr2_4:15550986-15551005 | None:intergenic | 25.0% |
| !!! | CAAATTGATTTTTTAGGGTT+AGG | - | chr2_4:15550984-15551003 | Msa0317640:CDS | 25.0% |
| !!! | AATTGATTTTTTAGGGTTAG+GGG | - | chr2_4:15550986-15551005 | Msa0317640:CDS | 25.0% |
| ! | GTTTATAGTGAATTGAATCA+TGG | - | chr2_4:15551295-15551314 | Msa0317640:CDS | 25.0% |
| !! | TCTTTATAGTTGTGCATTTT+TGG | - | chr2_4:15551541-15551560 | Msa0317640:CDS | 25.0% |
| ! | AAATGTGAGAAAATTAGAGA+AGG | + | chr2_4:15551694-15551713 | None:intergenic | 25.0% |
| ! | GGGTTTATGAAATTATTAGT+TGG | - | chr2_4:15551755-15551774 | Msa0317640:intron | 25.0% |
| ! | GAGTCTAGTTAAGTTAATTA+CGG | + | chr2_4:15551841-15551860 | None:intergenic | 25.0% |
| ! | ATTTATAACACAATACTACG+AGG | - | chr2_4:15552126-15552145 | Msa0317640:intron | 25.0% |
| !! | TAGATAGATACTGTTTTACT+TGG | - | chr2_4:15552285-15552304 | Msa0317640:intron | 25.0% |
| !! | AGATAGATACTGTTTTACTT+GGG | - | chr2_4:15552286-15552305 | Msa0317640:intron | 25.0% |
| !!! | ATTCCTTTTTTGATCTTTGT+TGG | - | chr2_4:15552326-15552345 | Msa0317640:intron | 25.0% |
| ! | AAACCAACAAAGATCAAAAA+AGG | + | chr2_4:15552332-15552351 | None:intergenic | 25.0% |
| !!! | TTTTTGATCTTTGTTGGTTT+AGG | - | chr2_4:15552332-15552351 | Msa0317640:intron | 25.0% |
| !! | AAATCGAATGACAATGTTTT+GGG | + | chr2_4:15552724-15552743 | None:intergenic | 25.0% |
| !! | AAAATCGAATGACAATGTTT+TGG | + | chr2_4:15552725-15552744 | None:intergenic | 25.0% |
| ! | ATATATTTATAGCAGCAGAA+GGG | + | chr2_4:15552753-15552772 | None:intergenic | 25.0% |
| ! | AATATATTTATAGCAGCAGA+AGG | + | chr2_4:15552754-15552773 | None:intergenic | 25.0% |
| !!! | TGTTTTATGCTTTGATTTAC+TGG | + | chr2_4:15553164-15553183 | None:intergenic | 25.0% |
| !!! | CAATTTTGATGTCTCTAAAA+GGG | - | chr2_4:15553813-15553832 | Msa0317640:intron | 25.0% |
| !!! | AATTTTGATGTCTCTAAAAG+GGG | - | chr2_4:15553814-15553833 | Msa0317640:intron | 25.0% |
| !! | ACTGCTCAAAAAAGTATATA+TGG | - | chr2_4:15554087-15554106 | Msa0317640:five_prime_UTR | 25.0% |
| TTCGGAACATTGAAAATGTT+TGG | - | chr2_4:15550793-15550812 | Msa0317640:CDS | 30.0% | |
| !!! | TTCATCGAGTTTTTTCTCTT+CGG | + | chr2_4:15550841-15550860 | None:intergenic | 30.0% |
| ! | GTTGGAGTTTTTATACGATT+CGG | - | chr2_4:15551069-15551088 | Msa0317640:CDS | 30.0% |
| ! | TTGGAGTTTTTATACGATTC+GGG | - | chr2_4:15551070-15551089 | Msa0317640:CDS | 30.0% |
| TAAAACATCTGAAGGTTTCA+AGG | - | chr2_4:15551105-15551124 | Msa0317640:CDS | 30.0% | |
| ! | ATTGAATCATGGTTTTTGTG+TGG | - | chr2_4:15551306-15551325 | Msa0317640:CDS | 30.0% |
| !!! | TATAGTTGTGCATTTTTGGT+TGG | - | chr2_4:15551545-15551564 | Msa0317640:CDS | 30.0% |
| !!! | TTCGTAGTTTAGTTTTGCTT+TGG | - | chr2_4:15551585-15551604 | Msa0317640:CDS | 30.0% |
| !!! | TTAGTTTTGCTTTGGTTGAT+TGG | - | chr2_4:15551593-15551612 | Msa0317640:CDS | 30.0% |
| !! | TAGTTTTGCTTTGGTTGATT+GGG | - | chr2_4:15551594-15551613 | Msa0317640:CDS | 30.0% |
| AATGAGATATGAAGAGTTCA+AGG | - | chr2_4:15551734-15551753 | Msa0317640:intron | 30.0% | |
| ATGAGATATGAAGAGTTCAA+GGG | - | chr2_4:15551735-15551754 | Msa0317640:intron | 30.0% | |
| AAACAGTATCTATCTACACA+AGG | + | chr2_4:15551863-15551882 | None:intergenic | 30.0% | |
| ATTCCTTTGTTGATCTTTGT+TGG | - | chr2_4:15551908-15551927 | Msa0317640:intron | 30.0% | |
| AAACCAACAAAGATCAACAA+AGG | + | chr2_4:15551914-15551933 | None:intergenic | 30.0% | |
| !! | TTGTTGATCTTTGTTGGTTT+AGG | - | chr2_4:15551914-15551933 | Msa0317640:intron | 30.0% |
| GCTTGGTTACTATTGTATTT+CGG | - | chr2_4:15551982-15552001 | Msa0317640:intron | 30.0% | |
| ! | AGCTTTGGTTGATTGATTAT+TGG | - | chr2_4:15552015-15552034 | Msa0317640:intron | 30.0% |
| GCTTTGGTTGATTGATTATT+GGG | - | chr2_4:15552016-15552035 | Msa0317640:intron | 30.0% | |
| AACAGGTAAAAAGATGCTAT+CGG | + | chr2_4:15552089-15552108 | None:intergenic | 30.0% | |
| TGAACCAGATTTCTTACTTT+GGG | - | chr2_4:15552408-15552427 | Msa0317640:intron | 30.0% | |
| TGTAAATTGTTAGAACTTGC+TGG | - | chr2_4:15552475-15552494 | Msa0317640:intron | 30.0% | |
| ! | ATTCCTTAGTTACAAGGTTT+TGG | + | chr2_4:15552578-15552597 | None:intergenic | 30.0% |
| TTGGAAATTCCTTAGTTACA+AGG | + | chr2_4:15552584-15552603 | None:intergenic | 30.0% | |
| AAATTGAATCAGAAGGCTTA+TGG | + | chr2_4:15552619-15552638 | None:intergenic | 30.0% | |
| !! | ATTTTCCATCTTAAGTTGCA+TGG | - | chr2_4:15552640-15552659 | Msa0317640:intron | 30.0% |
| !! | TTTTCCATCTTAAGTTGCAT+GGG | - | chr2_4:15552641-15552660 | Msa0317640:intron | 30.0% |
| TTAGCTGATGTTCAATAACA+AGG | + | chr2_4:15552669-15552688 | None:intergenic | 30.0% | |
| AAGTTAGACCATAACATTGT+AGG | - | chr2_4:15552693-15552712 | Msa0317640:intron | 30.0% | |
| AATGATAATAAGCCAAAGTC+AGG | - | chr2_4:15553766-15553785 | Msa0317640:intron | 30.0% | |
| !! | CCTTTTAGAGACATCAAAAT+TGG | + | chr2_4:15553815-15553834 | None:intergenic | 30.0% |
| !! | CCAATTTTGATGTCTCTAAA+AGG | - | chr2_4:15553812-15553831 | Msa0317640:intron | 30.0% |
| AAAGAAAAATCGCGCTATTG+CGG | + | chr2_4:15550622-15550641 | None:intergenic | 35.0% | |
| AACAAAATCCGACGTCAAAA+TGG | - | chr2_4:15550728-15550747 | Msa0317640:CDS | 35.0% | |
| ACAAAATCCGACGTCAAAAT+GGG | - | chr2_4:15550729-15550748 | Msa0317640:CDS | 35.0% | |
| !! | TTTCATACCCATTTTGACGT+CGG | + | chr2_4:15550739-15550758 | None:intergenic | 35.0% |
| AATTGGGGGAAGAGTAATTA+CGG | + | chr2_4:15550936-15550955 | None:intergenic | 35.0% | |
| ! | ACCTTCAGATGTTTTACCAA+CGG | + | chr2_4:15551101-15551120 | None:intergenic | 35.0% |
| CAAGAATCATTAGCAGATTG+AGG | + | chr2_4:15551376-15551395 | None:intergenic | 35.0% | |
| CTCAATCTGCTAATGATTCT+TGG | - | chr2_4:15551374-15551393 | Msa0317640:CDS | 35.0% | |
| AATCTGCTAATGATTCTTGG+AGG | - | chr2_4:15551377-15551396 | Msa0317640:CDS | 35.0% | |
| TAAAAACAACCCTGTCAAGA+TGG | - | chr2_4:15551462-15551481 | Msa0317640:CDS | 35.0% | |
| !!! | CGGTAAGCCTTTTTTTCTTT+TGG | - | chr2_4:15551500-15551519 | Msa0317640:CDS | 35.0% |
| GCGAGAAAATTAGAGAAAAC+AGG | + | chr2_4:15552106-15552125 | None:intergenic | 35.0% | |
| GTGAACCAGATTTCTTACTT+TGG | - | chr2_4:15552407-15552426 | Msa0317640:intron | 35.0% | |
| CTTACCCAAAGTAAGAAATC+TGG | + | chr2_4:15552415-15552434 | None:intergenic | 35.0% | |
| GATTTCTTACTTTGGGTAAG+AGG | - | chr2_4:15552415-15552434 | Msa0317640:intron | 35.0% | |
| TTTGGGTAAGAGGAATTACA+GGG | - | chr2_4:15552425-15552444 | Msa0317640:intron | 35.0% | |
| ! | TACCTTTTGCCATTATTTGC+CGG | - | chr2_4:15552504-15552523 | Msa0317640:intron | 35.0% |
| !! | CTTAGTTACAAGGTTTTGGT+AGG | + | chr2_4:15552574-15552593 | None:intergenic | 35.0% |
| CTACCAAAACCTTGTAACTA+AGG | - | chr2_4:15552572-15552591 | Msa0317640:intron | 35.0% | |
| GGGAAATTCCTACAATGTTA+TGG | + | chr2_4:15552704-15552723 | None:intergenic | 35.0% | |
| GTTTACTTCAGCTTCTGTTT+AGG | - | chr2_4:15552815-15552834 | Msa0317640:intron | 35.0% | |
| AAATAGCATGACCATTCCTT+AGG | + | chr2_4:15552879-15552898 | None:intergenic | 35.0% | |
| AATACTCATGTCTCATGTGT+TGG | - | chr2_4:15552963-15552982 | Msa0317640:intron | 35.0% | |
| ATACTCATGTCTCATGTGTT+GGG | - | chr2_4:15552964-15552983 | Msa0317640:intron | 35.0% | |
| TCTAATTTATGGCCTGTCTT+TGG | - | chr2_4:15553065-15553084 | Msa0317640:intron | 35.0% | |
| GAAGAAAGATCACAGTAAGA+AGG | - | chr2_4:15553120-15553139 | Msa0317640:intron | 35.0% | |
| ACATTGCAGAAAGGAGAAAA+AGG | - | chr2_4:15553203-15553222 | Msa0317640:intron | 35.0% | |
| TTACCGAAAGGAGAAAAAGA+AGG | - | chr2_4:15553287-15553306 | Msa0317640:intron | 35.0% | |
| TTGAAGATGACATTGCAGAA+AGG | - | chr2_4:15553359-15553378 | Msa0317640:CDS | 35.0% | |
| TTGCAGAAAGGAGAAAAAGT+AGG | - | chr2_4:15553371-15553390 | Msa0317640:CDS | 35.0% | |
| TTGCTGAAAGGAGAAAAAGA+AGG | - | chr2_4:15553455-15553474 | Msa0317640:CDS | 35.0% | |
| TCAGAGAATGAATCAAGTGA+AGG | - | chr2_4:15553526-15553545 | Msa0317640:intron | 35.0% | |
| ATGAATCAAGTGAAGGAGAA+AGG | - | chr2_4:15553533-15553552 | Msa0317640:intron | 35.0% | |
| ! | ATGTCTCTAAAAGGGGAAAT+GGG | - | chr2_4:15553821-15553840 | Msa0317640:intron | 35.0% |
| AGATCTTCTGCTAATTCACT+CGG | - | chr2_4:15553868-15553887 | Msa0317640:intron | 35.0% | |
| TAAGCTTTCAGAAGAAGAGA+GGG | - | chr2_4:15553927-15553946 | Msa0317640:CDS | 35.0% | |
| GAGATGGAAACGTATAAAGA+AGG | - | chr2_4:15553999-15554018 | Msa0317640:CDS | 35.0% | |
| TTCTAGTGGGAAGAATTTCT+TGG | - | chr2_4:15554062-15554081 | Msa0317640:exon | 35.0% | |
| AGATCTGCCTTGAGAATAAT+GGG | + | chr2_4:15554163-15554182 | None:intergenic | 35.0% | |
| CGTCTTCTTCAAGAAAAAGC+TGG | - | chr2_4:15550903-15550922 | Msa0317640:CDS | 40.0% | |
| ATAAAAACTCCAACCTCTCC+TGG | + | chr2_4:15551063-15551082 | None:intergenic | 40.0% | |
| ! | TCCGTTGGTAAAACATCTGA+AGG | - | chr2_4:15551097-15551116 | Msa0317640:CDS | 40.0% |
| ACCTTCATCTTCTGCTTCTA+AGG | - | chr2_4:15551165-15551184 | Msa0317640:CDS | 40.0% | |
| ACCTTAGAAGCAGAAGATGA+AGG | + | chr2_4:15551169-15551188 | None:intergenic | 40.0% | |
| ! | TGGTTTTTGTGTGGTTTAGC+AGG | - | chr2_4:15551315-15551334 | Msa0317640:CDS | 40.0% |
| !! | TGTTCCTGGAGCTTTATTTG+AGG | - | chr2_4:15551345-15551364 | Msa0317640:CDS | 40.0% |
| TTCTCCTCAAATAAAGCTCC+AGG | + | chr2_4:15551352-15551371 | None:intergenic | 40.0% | |
| GATGGCCATGATCAGAAAAT+CGG | - | chr2_4:15551480-15551499 | Msa0317640:CDS | 40.0% | |
| !!! | GCTTACCGATTTTCTGATCA+TGG | + | chr2_4:15551488-15551507 | None:intergenic | 40.0% |
| TGCTTTGGTTGATTGGGTAT+TGG | - | chr2_4:15551600-15551619 | Msa0317640:CDS | 40.0% | |
| GCTTTGGTTGATTGGGTATT+GGG | - | chr2_4:15551601-15551620 | Msa0317640:CDS | 40.0% | |
| ! | CTTATGCATAGTCTTGACTG+CGG | - | chr2_4:15551629-15551648 | Msa0317640:CDS | 40.0% |
| GTGAGAAAATTAGAGAAGGC+AGG | + | chr2_4:15551690-15551709 | None:intergenic | 40.0% | |
| TCGAGAGTTAGAGAATTGCA+AGG | - | chr2_4:15551801-15551820 | Msa0317640:intron | 40.0% | |
| ACAATAGTAACCAAGCGTAC+TGG | + | chr2_4:15551978-15551997 | None:intergenic | 40.0% | |
| TGCATTCAAGACCATGCATA+AGG | + | chr2_4:15552046-15552065 | None:intergenic | 40.0% | |
| TCGAGAGTTAGTGAATTGCA+AGG | - | chr2_4:15552219-15552238 | Msa0317640:intron | 40.0% | |
| CTTTGGGTAAGAGGAATTAC+AGG | - | chr2_4:15552424-15552443 | Msa0317640:intron | 40.0% | |
| TTGGGTAAGAGGAATTACAG+GGG | - | chr2_4:15552426-15552445 | Msa0317640:intron | 40.0% | |
| !! | TTGTTAGAACTTGCTGGTGT+AGG | - | chr2_4:15552481-15552500 | Msa0317640:intron | 40.0% |
| ! | ACCTTTTGCCATTATTTGCC+GGG | - | chr2_4:15552505-15552524 | Msa0317640:intron | 40.0% |
| TATTTATAGCAGCAGAAGGG+TGG | + | chr2_4:15552750-15552769 | None:intergenic | 40.0% | |
| AACAGAAGCTGAAGTAAACG+AGG | + | chr2_4:15552814-15552833 | None:intergenic | 40.0% | |
| CTGACATTGTTACCAAAGAC+AGG | + | chr2_4:15553080-15553099 | None:intergenic | 40.0% | |
| ! | CTGTCTTTGGTAACAATGTC+AGG | - | chr2_4:15553078-15553097 | Msa0317640:intron | 40.0% |
| !! | TGGTAACAATGTCAGGTTGA+AGG | - | chr2_4:15553085-15553104 | Msa0317640:intron | 40.0% |
| !! | ACAATGTCAGGTTGAAGGAA+AGG | - | chr2_4:15553090-15553109 | Msa0317640:intron | 40.0% |
| CCTTTCGGTAATGTCATCTT+CGG | + | chr2_4:15553278-15553297 | None:intergenic | 40.0% | |
| ! | GGTCCTTCTTTTTCTCCTTT+CGG | + | chr2_4:15553293-15553312 | None:intergenic | 40.0% |
| CCTTTCAGCAATGTCATCTT+CGG | + | chr2_4:15553446-15553465 | None:intergenic | 40.0% | |
| CTTGTCAAGGTCTTCATCAA+TGG | + | chr2_4:15553482-15553501 | None:intergenic | 40.0% | |
| ! | CTTTGACTTTGCTTTGACTC+CGG | + | chr2_4:15553618-15553637 | None:intergenic | 40.0% |
| GAGAAGATGCTGATAACAGA+AGG | - | chr2_4:15553644-15553663 | Msa0317640:CDS | 40.0% | |
| ! | CTTTTCCTTTGCTTTGACTC+TGG | + | chr2_4:15553720-15553739 | None:intergenic | 40.0% |
| TCAAAATTGGACTGACCTTC+TGG | + | chr2_4:15553802-15553821 | None:intergenic | 40.0% | |
| ! | GATGTCTCTAAAAGGGGAAA+TGG | - | chr2_4:15553820-15553839 | Msa0317640:intron | 40.0% |
| GACGTGAATCACACTATAAG+CGG | - | chr2_4:15553890-15553909 | Msa0317640:CDS | 40.0% | |
| ACACTATAAGCGGAGAAATG+TGG | - | chr2_4:15553900-15553919 | Msa0317640:CDS | 40.0% | |
| ! | CTCTCTTCTTCTGAAAGCTT+AGG | + | chr2_4:15553928-15553947 | None:intergenic | 40.0% |
| CTAAGCTTTCAGAAGAAGAG+AGG | - | chr2_4:15553926-15553945 | Msa0317640:CDS | 40.0% | |
| TTGCTGCTGAGTTACATGAA+GGG | - | chr2_4:15553974-15553993 | Msa0317640:CDS | 40.0% | |
| GAAACGTATAAAGAAGGCTG+AGG | - | chr2_4:15554005-15554024 | Msa0317640:CDS | 40.0% | |
| GAAATTCTTCCCACTAGAAC+TGG | + | chr2_4:15554061-15554080 | None:intergenic | 40.0% | |
| !! | AGTATATATGGTGCTGCAGA+AGG | - | chr2_4:15554099-15554118 | Msa0317640:five_prime_UTR | 40.0% |
| CAGATCTGCCTTGAGAATAA+TGG | + | chr2_4:15554164-15554183 | None:intergenic | 40.0% | |
| CATTATTCTCAAGGCAGATC+TGG | - | chr2_4:15554162-15554181 | Msa0317640:five_prime_UTR | 40.0% | |
| ! | GAACAAAAAGGGTTGGCACA+CGG | - | chr2_4:15550764-15550783 | Msa0317640:CDS | 45.0% |
| ! | AACAAAAAGGGTTGGCACAC+GGG | - | chr2_4:15550765-15550784 | Msa0317640:CDS | 45.0% |
| ! | TTCGGCGCTATGCTTTTGTT+CGG | + | chr2_4:15550823-15550842 | None:intergenic | 45.0% |
| GGAAGAGTAATTACGGAACG+AGG | + | chr2_4:15550929-15550948 | None:intergenic | 45.0% | |
| ! | TCGATTTGATTGCAGTCACC+AGG | - | chr2_4:15551042-15551061 | Msa0317640:CDS | 45.0% |
| ! | TACGATTCGGGATTATCCGT+TGG | - | chr2_4:15551082-15551101 | Msa0317640:CDS | 45.0% |
| GCATCTGTTGGATCGGATTT+AGG | + | chr2_4:15551145-15551164 | None:intergenic | 45.0% | |
| ! | TGAAGGTGCATCTGTTGGAT+CGG | + | chr2_4:15551152-15551171 | None:intergenic | 45.0% |
| ! | GAAGATGAAGGTGCATCTGT+TGG | + | chr2_4:15551157-15551176 | None:intergenic | 45.0% |
| TGATCATGGCCATCTTGACA+GGG | + | chr2_4:15551474-15551493 | None:intergenic | 45.0% | |
| CGCAGTCAAGACTATGCATA+AGG | + | chr2_4:15551631-15551650 | None:intergenic | 45.0% | |
| TAAAGTCAAGCCAGTACGCT+TGG | - | chr2_4:15551965-15551984 | Msa0317640:intron | 45.0% | |
| ! | TTCGGCTCGTAGTTTAGCTT+TGG | - | chr2_4:15552000-15552019 | Msa0317640:intron | 45.0% |
| ! | TATTGGGTCAGCCTTATGCA+TGG | - | chr2_4:15552032-15552051 | Msa0317640:intron | 45.0% |
| GAGTTAGTGAATTGCAAGGC+AGG | - | chr2_4:15552223-15552242 | Msa0317640:intron | 45.0% | |
| ! | CCTTTTGCCATTATTTGCCG+GGG | - | chr2_4:15552506-15552525 | Msa0317640:intron | 45.0% |
| ATTGCATCCCCGGCAAATAA+TGG | + | chr2_4:15552516-15552535 | None:intergenic | 45.0% | |
| CACAATGCATATTGCATCCC+CGG | + | chr2_4:15552526-15552545 | None:intergenic | 45.0% | |
| CTTATGGCAGCAGAGTGTAT+TGG | + | chr2_4:15552603-15552622 | None:intergenic | 45.0% | |
| CTGAAGTAAACGAGGAGGTT+AGG | + | chr2_4:15552806-15552825 | None:intergenic | 45.0% | |
| AGAAGCTGAAGTAAACGAGG+AGG | + | chr2_4:15552811-15552830 | None:intergenic | 45.0% | |
| !! | TAGGAAGCCGTAATGGACAA+GGG | + | chr2_4:15552860-15552879 | None:intergenic | 45.0% |
| !! | TTAGGAAGCCGTAATGGACA+AGG | + | chr2_4:15552861-15552880 | None:intergenic | 45.0% |
| TTGTCCATTACGGCTTCCTA+AGG | - | chr2_4:15552860-15552879 | Msa0317640:intron | 45.0% | |
| CATTCCTTAGGAAGCCGTAA+TGG | + | chr2_4:15552867-15552886 | None:intergenic | 45.0% | |
| CATTACGGCTTCCTAAGGAA+TGG | - | chr2_4:15552865-15552884 | Msa0317640:intron | 45.0% | |
| CAGACGATGACATTGCAGAA+AGG | - | chr2_4:15553194-15553213 | Msa0317640:intron | 45.0% | |
| CTTGTCAAGGTCTTCATCAC+TGG | + | chr2_4:15553230-15553249 | None:intergenic | 45.0% | |
| CCGAAGATGACATTACCGAA+AGG | - | chr2_4:15553275-15553294 | Msa0317640:intron | 45.0% | |
| CTTGTCAAGGTCTTCATCAC+TGG | + | chr2_4:15553230-15553249 | None:intergenic | 45.0% | |
| CCGAAGATGACATTGCTGAA+AGG | - | chr2_4:15553443-15553462 | Msa0317640:CDS | 45.0% | |
| ! | CTTTGACTCTGGTGATGACT+GGG | + | chr2_4:15553709-15553728 | None:intergenic | 45.0% |
| CATCACCAGAGTCAAAGCAA+AGG | - | chr2_4:15553712-15553731 | Msa0317640:CDS | 45.0% | |
| GGAGCATATCTTCCTGACTT+TGG | + | chr2_4:15553781-15553800 | None:intergenic | 45.0% | |
| TCAGGAAGATATGCTCCAGA+AGG | - | chr2_4:15553784-15553803 | Msa0317640:intron | 45.0% | |
| GCAGAAGATCTAGTAGAGCT+TGG | + | chr2_4:15553859-15553878 | None:intergenic | 45.0% | |
| AAGAGAGGGCTGCTAAACTT+AGG | - | chr2_4:15553941-15553960 | Msa0317640:CDS | 45.0% | |
| CTTGCTGCTGAGTTACATGA+AGG | - | chr2_4:15553973-15553992 | Msa0317640:CDS | 45.0% | |
| TGCTGCTGAGTTACATGAAG+GGG | - | chr2_4:15553975-15553994 | Msa0317640:CDS | 45.0% | |
| AGTTACATGAAGGGGAGAGA+TGG | - | chr2_4:15553983-15554002 | Msa0317640:CDS | 45.0% | |
| ! | ATCCAGAACACCAGTTCTAG+TGG | - | chr2_4:15554048-15554067 | Msa0317640:exon | 45.0% |
| ! | TCCAGAACACCAGTTCTAGT+GGG | - | chr2_4:15554049-15554068 | Msa0317640:exon | 45.0% |
| !! | ATATATGGTGCTGCAGAAGG+CGG | - | chr2_4:15554102-15554121 | Msa0317640:five_prime_UTR | 45.0% |
| TATTCTCAAGGCAGATCTGG+AGG | - | chr2_4:15554165-15554184 | Msa0317640:five_prime_UTR | 45.0% | |
| GAGGTGAAGGCAATGCATTT+AGG | - | chr2_4:15554184-15554203 | Msa0317640:five_prime_UTR | 45.0% | |
| GTGAAGGCAATGCATTTAGG+CGG | - | chr2_4:15554187-15554206 | Msa0317640:five_prime_UTR | 45.0% | |
| TTGATTGCAGTCACCAGGAG+AGG | - | chr2_4:15551047-15551066 | Msa0317640:CDS | 50.0% | |
| TAGCAGGATGCAAGTGTTCC+TGG | - | chr2_4:15551331-15551350 | Msa0317640:CDS | 50.0% | |
| CGCTGGCGAATCATAAGCAA+GGG | + | chr2_4:15551418-15551437 | None:intergenic | 50.0% | |
| CCTTGCTTATGATTCGCCAG+CGG | - | chr2_4:15551416-15551435 | Msa0317640:CDS | 50.0% | |
| CTTGCTTATGATTCGCCAGC+GGG | - | chr2_4:15551417-15551436 | Msa0317640:CDS | 50.0% | |
| CTGATCATGGCCATCTTGAC+AGG | + | chr2_4:15551475-15551494 | None:intergenic | 50.0% | |
| GTTCACACGCACAAGTGTAC+TGG | + | chr2_4:15552393-15552412 | None:intergenic | 50.0% | |
| CCCCGGCAAATAATGGCAAA+AGG | + | chr2_4:15552509-15552528 | None:intergenic | 50.0% | |
| CGGGGATGCAATATGCATTG+TGG | - | chr2_4:15552524-15552543 | Msa0317640:intron | 50.0% | |
| GGCTCCCATGCAACTTAAGA+TGG | + | chr2_4:15552648-15552667 | None:intergenic | 50.0% | |
| ATGCAGCCCCTTGTCCATTA+CGG | - | chr2_4:15552850-15552869 | Msa0317640:intron | 50.0% | |
| !! | AGGAAGCCGTAATGGACAAG+GGG | + | chr2_4:15552859-15552878 | None:intergenic | 50.0% |
| CCTTGTGACGCTTCTTGTCA+AGG | + | chr2_4:15553243-15553262 | None:intergenic | 50.0% | |
| !! | CCTTGACAAGAAGCGTCACA+AGG | - | chr2_4:15553240-15553259 | Msa0317640:intron | 50.0% |
| CCTTGCGATGCTTCTTGTCA+AGG | + | chr2_4:15553411-15553430 | None:intergenic | 50.0% | |
| !! | CCTTGACAAGAAGCATCGCA+AGG | - | chr2_4:15553408-15553427 | Msa0317640:CDS | 50.0% |
| CCTTGTGACGCTTCTTGTCA+AGG | + | chr2_4:15553243-15553262 | None:intergenic | 50.0% | |
| !! | CCTTGACAAGAAGCGTCACA+AGG | - | chr2_4:15553240-15553259 | Msa0317640:intron | 50.0% |
| AAAGATCTCCCAGTCACCAC+CGG | - | chr2_4:15553596-15553615 | Msa0317640:intron | 50.0% | |
| TGACTTTGCTTTGACTCCGG+TGG | + | chr2_4:15553615-15553634 | None:intergenic | 50.0% | |
| ! | GCTTTGACTCTGGTGATGAC+TGG | + | chr2_4:15553710-15553729 | None:intergenic | 50.0% |
| TCCCACTAGAACTGGTGTTC+TGG | + | chr2_4:15554053-15554072 | None:intergenic | 50.0% | |
| !! | TATATGGTGCTGCAGAAGGC+GGG | - | chr2_4:15554103-15554122 | Msa0317640:five_prime_UTR | 50.0% |
| GTTGGCACACGGGAAGTCTT+CGG | - | chr2_4:15550775-15550794 | Msa0317640:CDS | 55.0% | |
| TTGCAGTCACCAGGAGAGGT+TGG | - | chr2_4:15551051-15551070 | Msa0317640:CDS | 55.0% | |
| CCGCTGGCGAATCATAAGCA+AGG | + | chr2_4:15551419-15551438 | None:intergenic | 55.0% | |
| TATGATTCGCCAGCGGGAAC+AGG | - | chr2_4:15551423-15551442 | Msa0317640:CDS | 55.0% | |
| AAGGGGCTGCATGGAATGGA+TGG | + | chr2_4:15552842-15552861 | None:intergenic | 55.0% | |
| !! | GTAATGGACAAGGGGCTGCA+TGG | + | chr2_4:15552851-15552870 | None:intergenic | 55.0% |
| CCTTGCGACGCTTCTTGTCA+AGG | + | chr2_4:15553327-15553346 | None:intergenic | 55.0% | |
| !! | CCTTGACAAGAAGCGTCGCA+AGG | - | chr2_4:15553324-15553343 | Msa0317640:CDS | 55.0% |
| CTTTGACTCCGGTGGTGACT+GGG | + | chr2_4:15553607-15553626 | None:intergenic | 55.0% | |
| !! | CAATAGCCGAGAGTGTCCGA+CGG | - | chr2_4:15554133-15554152 | Msa0317640:five_prime_UTR | 55.0% |
| !! | GAGAATAATGGGTCCGCCGT+CGG | + | chr2_4:15554152-15554171 | None:intergenic | 55.0% |
| CGGCGGACCCATTATTCTCA+AGG | - | chr2_4:15554153-15554172 | Msa0317640:five_prime_UTR | 55.0% | |
| CAAGGCAGATCTGGAGGTGA+AGG | - | chr2_4:15554171-15554190 | Msa0317640:five_prime_UTR | 55.0% | |
| GGACAAGGGGCTGCATGGAA+TGG | + | chr2_4:15552846-15552865 | None:intergenic | 60.0% | |
| GCTTTGACTCCGGTGGTGAC+TGG | + | chr2_4:15553608-15553627 | None:intergenic | 60.0% | |
| GGCTGAGGAGACTGATGCAC+AGG | - | chr2_4:15554020-15554039 | Msa0317640:CDS | 60.0% | |
| CAAGCGCTTCCTGTTCCCGC+TGG | + | chr2_4:15551435-15551454 | None:intergenic | 65.0% | |
| !! | TAGCCGAGAGTGTCCGACGG+CGG | - | chr2_4:15554136-15554155 | Msa0317640:five_prime_UTR | 65.0% |
| GGTCCGCCGTCGGACACTCT+CGG | + | chr2_4:15554142-15554161 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_4 | gene | 15550599 | 15554212 | 15550599 | ID=Msa0317640;Name=Msa0317640 |
| chr2_4 | mRNA | 15550599 | 15554212 | 15550599 | ID=Msa0317640-mRNA-1;Parent=Msa0317640;Name=Msa0317640-mRNA-1;_AED=0.11;_eAED=0.11;_QI=148|1|0.75|1|1|1|4|0|531 |
| chr2_4 | exon | 15550599 | 15551711 | 15550599 | ID=Msa0317640-mRNA-1:exon:5785;Parent=Msa0317640-mRNA-1 |
| chr2_4 | exon | 15553310 | 15553474 | 15553310 | ID=Msa0317640-mRNA-1:exon:5784;Parent=Msa0317640-mRNA-1 |
| chr2_4 | exon | 15553625 | 15553754 | 15553625 | ID=Msa0317640-mRNA-1:exon:5783;Parent=Msa0317640-mRNA-1 |
| chr2_4 | exon | 15553877 | 15554212 | 15553877 | ID=Msa0317640-mRNA-1:exon:5782;Parent=Msa0317640-mRNA-1 |
| chr2_4 | five_prime_UTR | 15554065 | 15554212 | 15554065 | ID=Msa0317640-mRNA-1:five_prime_utr;Parent=Msa0317640-mRNA-1 |
| chr2_4 | CDS | 15553877 | 15554064 | 15553877 | ID=Msa0317640-mRNA-1:cds;Parent=Msa0317640-mRNA-1 |
| chr2_4 | CDS | 15553625 | 15553754 | 15553625 | ID=Msa0317640-mRNA-1:cds;Parent=Msa0317640-mRNA-1 |
| chr2_4 | CDS | 15553310 | 15553474 | 15553310 | ID=Msa0317640-mRNA-1:cds;Parent=Msa0317640-mRNA-1 |
| chr2_4 | CDS | 15550599 | 15551711 | 15550599 | ID=Msa0317640-mRNA-1:cds;Parent=Msa0317640-mRNA-1 |
| Gene Sequence |
| Protein sequence |
