AlfalfaGEDB | Msa0292050

M. sativa cultivar zhongmu-4 / Msa0292050

KEGG: K00847
GO: GO:0003674 GO:0003824 GO:0004396 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005975 GO:0005996 GO:0006000 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0008865 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019200 GO:0019318 GO:0044237 GO:0044238 GO:0044262 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046835 GO:0071704
PFAM: PF00294.27

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0292050	EEF51471.1	38.914	221	55	5	8	150	29	247	8.26e-30	119

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0292050	sp\|Q9FLH8\|SCRK7_ARATH	67.188	64	21	0	2	65	18	81	5.52e-19	84.7
Msa0292050	sp\|Q9FLH8\|SCRK7_ARATH	46.602	103	41	3	60	150	213	313	2.91e-18	82.8

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0292050	A0A444D902	49.612	129	44	3	25	132	65	193	1.57e-24	103

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0101810	Msa0292050	-0.801083	1.064587e-48	-8.615850e-47
Msa0120020	Msa0292050	-0.802836	4.643781e-49	-8.615850e-47
Msa0215320	Msa0292050	-0.835659	1.475086e-56	-8.615850e-47
Msa0220740	Msa0292050	0.801355	9.363385e-49	-8.615850e-47
Msa0223410	Msa0292050	-0.814738	1.322426e-51	-8.615850e-47
Msa0226250	Msa0292050	0.810487	1.124662e-50	-8.615850e-47
Msa0226890	Msa0292050	0.827574	1.450828e-54	-8.615850e-47
Msa0243460	Msa0292050	0.807320	5.355435e-50	-8.615850e-47
Msa0249560	Msa0292050	0.801415	9.100553e-49	-8.615850e-47
Msa0253220	Msa0292050	0.927175	1.693589e-91	-8.615850e-47
Msa0288100	Msa0292050	0.810320	1.222555e-50	-8.615850e-47
Msa0292050	Msa0306210	-0.801554	8.524525e-49	-8.615850e-47
Msa0292050	Msa0336420	0.800027	1.747292e-48	-8.615850e-47
Msa0292050	Msa0338000	0.814245	1.699479e-51	-8.615850e-47
Msa0292050	Msa0344690	-0.810089	1.371099e-50	-8.615850e-47
Msa0292050	Msa0350320	-0.801241	9.878543e-49	-8.615850e-47
Msa0292050	Msa0392180	0.807459	5.002468e-50	-8.615850e-47
Msa0292050	Msa0405370	0.818359	2.042282e-52	-8.615850e-47
Msa0292050	Msa0424320	0.801011	1.101037e-48	-8.615850e-47
Msa0292050	Msa0444750	-0.804729	1.878212e-49	-8.615850e-47
Msa0292050	Msa0466390	0.800484	1.410368e-48	-8.615850e-47
Msa0292050	Msa0480980	0.816976	4.188438e-52	-8.615850e-47
Msa0292050	Msa0523940	0.802565	5.282151e-49	-8.615850e-47
Msa0292050	Msa0524890	-0.818585	1.815340e-52	-8.615850e-47
Msa0292050	Msa0536220	0.803352	3.631530e-49	-8.615850e-47
Msa0292050	Msa0548280	-0.810982	8.792432e-51	-8.615850e-47
Msa0292050	Msa0566500	-0.818616	1.786656e-52	-8.615850e-47
Msa0292050	Msa0581760	0.800342	1.507643e-48	-8.615850e-47
Msa0292050	Msa0585000	-0.809585	1.759193e-50	-8.615850e-47
Msa0292050	Msa0626090	0.809329	1.997125e-50	-8.615850e-47
Msa0292050	Msa0708860	0.801620	8.262706e-49	-8.615850e-47
Msa0292050	Msa0756630	-0.802144	6.450600e-49	-8.615850e-47
Msa0292050	Msa0776990	0.802826	4.665540e-49	-8.615850e-47
Msa0292050	Msa0802470	-0.813628	2.324277e-51	-8.615850e-47
Msa0292050	Msa0908770	-0.804037	2.618554e-49	-8.615850e-47
Msa0292050	Msa0942080	-0.832825	7.579831e-56	-8.615850e-47
Msa0292050	Msa0968680	0.803276	3.766271e-49	-8.615850e-47
Msa0292050	Msa0969520	0.806965	6.367641e-50	-8.615850e-47
Msa0292050	Msa0973100	0.802020	6.840494e-49	-8.615850e-47
Msa0292050	Msa0976670	0.806518	7.910692e-50	-8.615850e-47
Msa0292050	Msa0993290	0.807435	5.062213e-50	-8.615850e-47
Msa0292050	Msa0993600	0.806303	8.783899e-50	-8.615850e-47
Msa0292050	Msa1000860	0.808034	3.776774e-50	-8.615850e-47
Msa0292050	Msa1014540	0.805285	1.437362e-49	-8.615850e-47
Msa0292050	Msa1019840	-0.810200	1.297091e-50	-8.615850e-47
Msa0292050	Msa1044420	0.804994	1.653560e-49	-8.615850e-47
Msa0292050	Msa1068200	-0.806605	7.586441e-50	-8.615850e-47
Msa0292050	Msa1075080	-0.824003	1.021401e-53	-8.615850e-47
Msa0292050	Msa1075220	-0.852145	5.592602e-61	-8.615850e-47
Msa0292050	Msa1077390	0.816206	6.230597e-52	-8.615850e-47
Msa0292050	Msa1116130	-0.824982	6.006768e-54	-8.615850e-47
Msa0292050	Msa1121450	-0.800790	1.221469e-48	-8.615850e-47
Msa0292050	Msa1139000	-0.812202	4.774677e-51	-8.615850e-47
Msa0292050	Msa1156340	-0.805537	1.272404e-49	-8.615850e-47
Msa0292050	Msa1162550	-0.847114	1.419391e-59	-8.615850e-47
Msa0292050	Msa1165540	0.816467	5.447257e-52	-8.615850e-47
Msa0292050	Msa1183100	-0.806359	8.546008e-50	-8.615850e-47
Msa0292050	Msa1233890	0.812892	3.371994e-51	-8.615850e-47
Msa0292050	Msa1284680	0.818219	2.197544e-52	-8.615850e-47
Msa0292050	Msa1310770	-0.803187	3.929834e-49	-8.615850e-47
Msa0292050	Msa1335860	0.802517	5.403508e-49	-8.615850e-47
Msa0292050	Msa1364830	0.807105	5.945842e-50	-8.615850e-47
Msa0292050	Msa1367080	0.812273	4.605236e-51	-8.615850e-47
Msa0292050	Msa1445610	-0.816806	4.573174e-52	-8.615850e-47
Msa0292050	Msa1451620	-0.855248	7.165493e-62	-8.615850e-47
Msa0292050	Msa1453560	0.803966	2.709141e-49	-8.615850e-47

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0292050	MtrunA17_Chr1g0204101	53.922	102	33	3	60	149	213	312	1.94e-24	96.3
Msa0292050	MtrunA17_Chr1g0204101	67.647	68	21	1	1	68	18	84	4.46e-21	87.4
Msa0292050	MtrunA17_Chr6g0474331	61.333	75	28	1	3	77	24	97	4.92e-21	87.4
Msa0292050	MtrunA17_Chr6g0474331	51.961	102	35	3	60	149	218	317	6.15e-21	87.0
Msa0292050	MtrunA17_Chr5g0434971	63.380	71	25	1	5	75	65	134	1.81e-19	83.2
Msa0292050	MtrunA17_Chr5g0434971	44.118	102	44	3	60	150	257	356	8.96e-18	78.6
Msa0292050	MtrunA17_Chr1g0177771	51.042	96	35	2	60	143	429	524	7.95e-19	82.0
Msa0292050	MtrunA17_Chr1g0177321	50.000	96	36	2	60	143	346	441	2.23e-18	80.5
Msa0292050	MtrunA17_Chr1g0171921	51.042	96	35	2	60	143	372	467	2.27e-18	80.5
Msa0292050	MtrunA17_Chr1g0183241	49.020	102	38	4	60	149	279	378	1.82e-17	77.8
Msa0292050	MtrunA17_Chr2g0329451	60.656	61	24	0	5	65	12	72	1.73e-16	74.7
Msa0292050	MtrunA17_Chr2g0329451	40.594	101	48	3	60	150	204	302	1.07e-14	69.7
Msa0292050	MtrunA17_Chr4g0033631	62.295	61	23	0	5	65	13	73	1.88e-16	74.3
Msa0292050	MtrunA17_Chr4g0033631	41.584	101	47	3	60	150	205	303	2.28e-14	68.6
Msa0292050	MtrunA17_Chr1g0183661	48.039	102	32	5	60	149	173	265	5.14e-15	70.5
Msa0292050	MtrunA17_Chr1g0188291	40.594	101	48	3	60	150	198	296	1.38e-13	66.6
Msa0292050	MtrunA17_Chr1g0188291	55.932	59	26	0	7	65	8	66	4.93e-13	65.1
Msa0292050	MtrunA17_Chr7g0246411	50.847	59	29	0	7	65	41	99	1.75e-11	58.9

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0292050	AT5G51830.2	67.188	64	21	0	2	65	18	81	5.61e-20	84.7
Msa0292050	AT5G51830.2	46.602	103	41	3	60	150	213	313	2.96e-19	82.8
Msa0292050	AT5G51830.1	67.188	64	21	0	2	65	18	81	5.61e-20	84.7
Msa0292050	AT5G51830.1	46.602	103	41	3	60	150	213	313	2.96e-19	82.8
Msa0292050	AT1G66430.1	47.059	102	41	3	60	150	255	354	2.55e-19	83.2
Msa0292050	AT1G66430.1	60.606	66	26	0	3	68	61	126	7.61e-18	79.0
Msa0292050	AT3G59480.1	62.712	59	22	0	7	65	10	68	6.76e-16	73.2
Msa0292050	AT3G59480.1	36.634	101	52	3	60	150	200	298	1.24e-11	61.2
Msa0292050	AT1G06020.1	60.000	60	24	0	6	65	9	68	1.09e-15	72.8
Msa0292050	AT1G06020.1	36.634	101	52	3	60	150	200	298	1.78e-11	60.8
Msa0292050	AT2G31390.1	61.667	60	23	0	6	65	8	67	1.65e-15	72.4
Msa0292050	AT2G31390.1	36.634	101	52	3	60	150	199	297	4.83e-12	62.4
Msa0292050	AT4G10260.1	41.584	101	47	3	60	150	196	294	3.80e-14	68.6
Msa0292050	AT4G10260.1	54.237	59	27	0	7	65	6	64	2.98e-12	63.2
Msa0292050	AT1G06030.1	53.968	63	29	0	3	65	7	69	1.98e-13	66.6
Msa0292050	AT1G06030.1	38.614	101	50	3	60	150	201	299	2.30e-13	66.2

Find 47 sgRNAs with CRISPR-Local

Find 212 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGTGAAAAGGGTATAAT+TGG	0.186965	2_3:-40813343	None:intergenic
CTCTTGCCACGCCCACTTAA+TGG	0.187653	2_3:+40813370	Msa0292050:three_prime_UTR
TATTTCGAATGTTCCCATTA+TGG	0.229548	2_3:+40813203	Msa0292050:three_prime_UTR
AAGCCACCTGCCACGTTTGC+AGG	0.280795	2_3:-40812056	None:intergenic
TCTTGCCACGCCCACTTAAT+GGG	0.301666	2_3:+40813371	Msa0292050:three_prime_UTR
AGTGGATTGGTTGTTCGTTT+TGG	0.323188	2_3:+40811948	Msa0292050:CDS
AAAGTATTGCCTTTATCAAT+AGG	0.325737	2_3:-40813293	None:intergenic
ATGGTGATGCATTTAATTAT+AGG	0.334354	2_3:+40812896	Msa0292050:CDS
GCAGGTGGCTTCTCTGAGTC+GGG	0.335070	2_3:+40812068	Msa0292050:CDS
TAATTATAATAAATCCATAA+TGG	0.348719	2_3:-40813217	None:intergenic
CGAATTACCGTGCAAATACT+TGG	0.356808	2_3:-40812943	None:intergenic
GGCAGGTGGCTTCTCTGAGT+CGG	0.375859	2_3:+40812067	Msa0292050:CDS
TCTTCTATACCTATTGATAA+AGG	0.382200	2_3:+40813284	Msa0292050:three_prime_UTR
AATTATAATAAATCCATAAT+GGG	0.398159	2_3:-40813216	None:intergenic
CTTGCAATTTGATGCAACAT+AGG	0.466474	2_3:+40813134	Msa0292050:three_prime_UTR
GTAAATGCCACCCCATTAAG+TGG	0.467246	2_3:-40813382	None:intergenic
ATGCTTCTAATTGTTACTGA+AGG	0.481972	2_3:+40812585	Msa0292050:CDS
ATTAGAGGGGTTCACACTAC+TGG	0.492764	2_3:+40812871	Msa0292050:CDS
GGTGCTCCTGCAAACGTGGC+AGG	0.499722	2_3:+40812050	Msa0292050:CDS
AGGTGGCTTCTCTGAGTCGG+GGG	0.500865	2_3:+40812070	Msa0292050:CDS
CCAGGAGCTTTCTTGAAAGC+AGG	0.501737	2_3:-40812026	None:intergenic
CCTGCTTTCAAGAAAGCTCC+TGG	0.520107	2_3:+40812026	Msa0292050:CDS
CAGGTGGCTTCTCTGAGTCG+GGG	0.541084	2_3:+40812069	Msa0292050:CDS
CTGCAAAGAAACAAGTGGAT+TGG	0.541361	2_3:+40811935	None:intergenic
TGCTTCTAATTGTTACTGAA+GGG	0.552682	2_3:+40812586	Msa0292050:CDS
AGAGACACTGCACCCACTGT+TGG	0.557623	2_3:-40811993	None:intergenic
GCCACCCCATTAAGTGGGCG+TGG	0.561663	2_3:-40813376	None:intergenic
AGGGATTGCTCCTCATGCAT+TGG	0.564760	2_3:-40813088	None:intergenic
ATTGTTACTGAAGGGTCAGA+GGG	0.569886	2_3:+40812594	Msa0292050:CDS
AATTGTTACTGAAGGGTCAG+AGG	0.570981	2_3:+40812593	Msa0292050:CDS
GCCACGCCCACTTAATGGGG+TGG	0.573749	2_3:+40813375	Msa0292050:three_prime_UTR
TTCTGACCCAAGTATTTGCA+CGG	0.577534	2_3:+40812936	Msa0292050:CDS
TGGTGGTGCTCCTGCAAACG+TGG	0.587504	2_3:+40812046	Msa0292050:CDS
ACGTTTGCAGGAGCACCACC+AGG	0.595374	2_3:-40812044	None:intergenic
GCTCCTGCAAACGTGGCAGG+TGG	0.602455	2_3:+40812053	Msa0292050:CDS
CTTGCCACGCCCACTTAATG+GGG	0.602766	2_3:+40813372	Msa0292050:three_prime_UTR
GGTGGCTTCTCTGAGTCGGG+GGG	0.606297	2_3:+40812071	Msa0292050:CDS
TTCATCTGCATCTAGAAGCA+AGG	0.610483	2_3:+40812094	Msa0292050:CDS
GGGGTTCACACTACTGGTGA+TGG	0.616600	2_3:+40812877	Msa0292050:CDS
GAATTACCGTGCAAATACTT+GGG	0.623480	2_3:-40812942	None:intergenic
TTTCTTGAAAGCAGGCGCAT+CGG	0.624453	2_3:-40812018	None:intergenic
GTATAATTGGAAATAAACAC+AGG	0.629840	2_3:-40813330	None:intergenic
GAAGGCTGCAAAGAAACAAG+TGG	0.629890	2_3:+40811930	None:intergenic
TAAATGCCACCCCATTAAGT+GGG	0.640589	2_3:-40813381	None:intergenic
GCTTTCAAGAAAGCTCCTGG+TGG	0.650698	2_3:+40812029	Msa0292050:CDS
TTATAGGATTCTCTACAGCG+TGG	0.718727	2_3:+40812912	Msa0292050:CDS
GGGCTTTATATATCACACCA+AGG	0.729307	2_3:+40812614	Msa0292050:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!	AATTATAATAAATCCATAAT+GGG	-	chr2_3:40813219-40813238	None:intergenic	10.0%
!!	TAATTATAATAAATCCATAA+TGG	-	chr2_3:40813220-40813239	None:intergenic	10.0%
!!	CAAAAACAAAAAAAAAAAAT+AGG	-	chr2_3:40813254-40813273	None:intergenic	10.0%
!!	AATTATAATAAATCCATAAT+GGG	-	chr2_3:40813219-40813238	None:intergenic	10.0%
!!	TAATTATAATAAATCCATAA+TGG	-	chr2_3:40813220-40813239	None:intergenic	10.0%
!!	CAAAAACAAAAAAAAAAAAT+AGG	-	chr2_3:40813254-40813273	None:intergenic	10.0%
!!!	TTTAATTTAATACTGATTGC+AGG	+	chr2_3:40812212-40812231	Msa0292050:intron	20.0%
!!	AAAATCATATTACGTACATA+TGG	+	chr2_3:40812352-40812371	Msa0292050:intron	20.0%
!!	AAATCATATTACGTACATAT+GGG	+	chr2_3:40812353-40812372	Msa0292050:intron	20.0%
!!	AAAAGTTACCTTTATGATAT+TGG	-	chr2_3:40812385-40812404	None:intergenic	20.0%
!!!	GTAAAGATGATATTACTTTT+TGG	+	chr2_3:40812520-40812539	Msa0292050:CDS	20.0%
!!!	AAACTTTTTTGAAAACTTCT+CGG	-	chr2_3:40813065-40813084	None:intergenic	20.0%
!!!	AAGAGTTTTAAAAGTGAAAA+GGG	-	chr2_3:40813355-40813374	None:intergenic	20.0%
!!!	TTTAATTTAATACTGATTGC+AGG	+	chr2_3:40812212-40812231	Msa0292050:intron	20.0%
!!	AAAATCATATTACGTACATA+TGG	+	chr2_3:40812352-40812371	Msa0292050:intron	20.0%
!!	AAATCATATTACGTACATAT+GGG	+	chr2_3:40812353-40812372	Msa0292050:intron	20.0%
!!	AAAAGTTACCTTTATGATAT+TGG	-	chr2_3:40812385-40812404	None:intergenic	20.0%
!!!	GTAAAGATGATATTACTTTT+TGG	+	chr2_3:40812520-40812539	Msa0292050:CDS	20.0%
!!!	AAACTTTTTTGAAAACTTCT+CGG	-	chr2_3:40813065-40813084	None:intergenic	20.0%
!!!	AAGAGTTTTAAAAGTGAAAA+GGG	-	chr2_3:40813355-40813374	None:intergenic	20.0%
!!!	TCGTTTTGGTAAAATGTTAA+TGG	+	chr2_3:40811962-40811981	Msa0292050:CDS	25.0%
!!	AATATGATTTTTAACAGCCT+TGG	-	chr2_3:40812343-40812362	None:intergenic	25.0%
!!!	CAATTAGAAGCATGATTTTA+GGG	-	chr2_3:40812578-40812597	None:intergenic	25.0%
!!!	ACAATTAGAAGCATGATTTT+AGG	-	chr2_3:40812579-40812598	None:intergenic	25.0%
!!	TGATTACTAAATTTTTGTGC+AGG	+	chr2_3:40812834-40812853	Msa0292050:intron	25.0%
!!	ATGGTGATGCATTTAATTAT+AGG	+	chr2_3:40812896-40812915	Msa0292050:CDS	25.0%
!!!	GTTGATGAAGTTATTTTATG+TGG	+	chr2_3:40813022-40813041	Msa0292050:intron	25.0%
!	TCTTCTATACCTATTGATAA+AGG	+	chr2_3:40813284-40813303	Msa0292050:three_prime_UTR	25.0%
!!!	AAAGTATTGCCTTTATCAAT+AGG	-	chr2_3:40813296-40813315	None:intergenic	25.0%
!!	AAAGGCAATACTTTTCTTTT+TGG	+	chr2_3:40813302-40813321	Msa0292050:three_prime_UTR	25.0%
!	GTATAATTGGAAATAAACAC+AGG	-	chr2_3:40813333-40813352	None:intergenic	25.0%
!!	AAAAGTGAAAAGGGTATAAT+TGG	-	chr2_3:40813346-40813365	None:intergenic	25.0%
!!!	CAAGAGTTTTAAAAGTGAAA+AGG	-	chr2_3:40813356-40813375	None:intergenic	25.0%
!!!	TCGTTTTGGTAAAATGTTAA+TGG	+	chr2_3:40811962-40811981	Msa0292050:CDS	25.0%
!!	AATATGATTTTTAACAGCCT+TGG	-	chr2_3:40812343-40812362	None:intergenic	25.0%
!!!	CAATTAGAAGCATGATTTTA+GGG	-	chr2_3:40812578-40812597	None:intergenic	25.0%
!!!	ACAATTAGAAGCATGATTTT+AGG	-	chr2_3:40812579-40812598	None:intergenic	25.0%
!!	TGATTACTAAATTTTTGTGC+AGG	+	chr2_3:40812834-40812853	Msa0292050:intron	25.0%
!!	ATGGTGATGCATTTAATTAT+AGG	+	chr2_3:40812896-40812915	Msa0292050:CDS	25.0%
!!!	GTTGATGAAGTTATTTTATG+TGG	+	chr2_3:40813022-40813041	Msa0292050:intron	25.0%
!	TCTTCTATACCTATTGATAA+AGG	+	chr2_3:40813284-40813303	Msa0292050:three_prime_UTR	25.0%
!!!	AAAGTATTGCCTTTATCAAT+AGG	-	chr2_3:40813296-40813315	None:intergenic	25.0%
!!	AAAGGCAATACTTTTCTTTT+TGG	+	chr2_3:40813302-40813321	Msa0292050:three_prime_UTR	25.0%
!	GTATAATTGGAAATAAACAC+AGG	-	chr2_3:40813333-40813352	None:intergenic	25.0%
!!	AAAAGTGAAAAGGGTATAAT+TGG	-	chr2_3:40813346-40813365	None:intergenic	25.0%
!!!	CAAGAGTTTTAAAAGTGAAA+AGG	-	chr2_3:40813356-40813375	None:intergenic	25.0%
!	ATTATACAGGCTTTAACCAT+GGG	-	chr2_3:40812190-40812209	None:intergenic	30.0%
!	TATTATACAGGCTTTAACCA+TGG	-	chr2_3:40812191-40812210	None:intergenic	30.0%
!!!	GATGATATTACTTTTTGGAC+TGG	+	chr2_3:40812525-40812544	Msa0292050:CDS	30.0%
	ATGCTTCTAATTGTTACTGA+AGG	+	chr2_3:40812585-40812604	Msa0292050:CDS	30.0%
	TGCTTCTAATTGTTACTGAA+GGG	+	chr2_3:40812586-40812605	Msa0292050:CDS	30.0%
	AAATCTGAGTGAAATGACTT+TGG	-	chr2_3:40812648-40812667	None:intergenic	30.0%
!!!	CAGATTTTAATTGTCTGCAT+TGG	+	chr2_3:40812661-40812680	Msa0292050:intron	30.0%
!	ATAATCGTTGACTGAAATGT+TGG	+	chr2_3:40812688-40812707	Msa0292050:intron	30.0%
	AATTTAGTAATCATCACTGC+TGG	-	chr2_3:40812827-40812846	None:intergenic	30.0%
!	AATTTTTGTGCAGGATTTTG+CGG	+	chr2_3:40812843-40812862	Msa0292050:intron	30.0%
!!	AAAAGATAGTTCTGAGTGTT+TGG	+	chr2_3:40812998-40813017	Msa0292050:intron	30.0%
	TATTTCGAATGTTCCCATTA+TGG	+	chr2_3:40813203-40813222	Msa0292050:three_prime_UTR	30.0%
!	ATTATACAGGCTTTAACCAT+GGG	-	chr2_3:40812190-40812209	None:intergenic	30.0%
!	TATTATACAGGCTTTAACCA+TGG	-	chr2_3:40812191-40812210	None:intergenic	30.0%
!!!	GATGATATTACTTTTTGGAC+TGG	+	chr2_3:40812525-40812544	Msa0292050:CDS	30.0%
	ATGCTTCTAATTGTTACTGA+AGG	+	chr2_3:40812585-40812604	Msa0292050:CDS	30.0%
	TGCTTCTAATTGTTACTGAA+GGG	+	chr2_3:40812586-40812605	Msa0292050:CDS	30.0%
	AAATCTGAGTGAAATGACTT+TGG	-	chr2_3:40812648-40812667	None:intergenic	30.0%
!!!	CAGATTTTAATTGTCTGCAT+TGG	+	chr2_3:40812661-40812680	Msa0292050:intron	30.0%
!	ATAATCGTTGACTGAAATGT+TGG	+	chr2_3:40812688-40812707	Msa0292050:intron	30.0%
	AATTTAGTAATCATCACTGC+TGG	-	chr2_3:40812827-40812846	None:intergenic	30.0%
!	AATTTTTGTGCAGGATTTTG+CGG	+	chr2_3:40812843-40812862	Msa0292050:intron	30.0%
!!	AAAAGATAGTTCTGAGTGTT+TGG	+	chr2_3:40812998-40813017	Msa0292050:intron	30.0%
	TATTTCGAATGTTCCCATTA+TGG	+	chr2_3:40813203-40813222	Msa0292050:three_prime_UTR	30.0%
	ATCTAGAAGCAAGGTTATGT+TGG	+	chr2_3:40812103-40812122	Msa0292050:intron	35.0%
	AATGTGACCATAAAAACCCA+TGG	+	chr2_3:40812171-40812190	Msa0292050:intron	35.0%
!	GCTTTAACCATGGGTTTTTA+TGG	-	chr2_3:40812181-40812200	None:intergenic	35.0%
!	CAGGCTAAAATATTCCGTTT+TGG	+	chr2_3:40812231-40812250	Msa0292050:intron	35.0%
	TCAAACTGATGGAACCAAAA+CGG	-	chr2_3:40812248-40812267	None:intergenic	35.0%
	TGGTTCATCAATCAAACTGA+TGG	-	chr2_3:40812259-40812278	None:intergenic	35.0%
	GGAACTAGCCAATATCATAA+AGG	+	chr2_3:40812374-40812393	Msa0292050:intron	35.0%
	GAAGAAAGAATGATGTGCAA+TGG	-	chr2_3:40812454-40812473	None:intergenic	35.0%
!!!	GATATTACTTTTTGGACTGG+TGG	+	chr2_3:40812528-40812547	Msa0292050:CDS	35.0%
!	ATTTTTGTGCAGGATTTTGC+GGG	+	chr2_3:40812844-40812863	Msa0292050:intron	35.0%
	GAATTACCGTGCAAATACTT+GGG	-	chr2_3:40812945-40812964	None:intergenic	35.0%
	CAAGTATTTGCACGGTAATT+CGG	+	chr2_3:40812944-40812963	Msa0292050:intron	35.0%
!	AAAGTTTTTGCCAATGCATG+AGG	+	chr2_3:40813078-40813097	Msa0292050:CDS	35.0%
!	CATCTTTTGTAGGTAATGCA+GGG	-	chr2_3:40813110-40813129	None:intergenic	35.0%
	CTTGCAATTTGATGCAACAT+AGG	+	chr2_3:40813134-40813153	Msa0292050:three_prime_UTR	35.0%
	ATCTAGAAGCAAGGTTATGT+TGG	+	chr2_3:40812103-40812122	Msa0292050:intron	35.0%
	AATGTGACCATAAAAACCCA+TGG	+	chr2_3:40812171-40812190	Msa0292050:intron	35.0%
!	GCTTTAACCATGGGTTTTTA+TGG	-	chr2_3:40812181-40812200	None:intergenic	35.0%
!	CAGGCTAAAATATTCCGTTT+TGG	+	chr2_3:40812231-40812250	Msa0292050:intron	35.0%
	TCAAACTGATGGAACCAAAA+CGG	-	chr2_3:40812248-40812267	None:intergenic	35.0%
	TGGTTCATCAATCAAACTGA+TGG	-	chr2_3:40812259-40812278	None:intergenic	35.0%
	GGAACTAGCCAATATCATAA+AGG	+	chr2_3:40812374-40812393	Msa0292050:intron	35.0%
	GAAGAAAGAATGATGTGCAA+TGG	-	chr2_3:40812454-40812473	None:intergenic	35.0%
!!!	GATATTACTTTTTGGACTGG+TGG	+	chr2_3:40812528-40812547	Msa0292050:CDS	35.0%
!	ATTTTTGTGCAGGATTTTGC+GGG	+	chr2_3:40812844-40812863	Msa0292050:intron	35.0%
	GAATTACCGTGCAAATACTT+GGG	-	chr2_3:40812945-40812964	None:intergenic	35.0%
	CAAGTATTTGCACGGTAATT+CGG	+	chr2_3:40812944-40812963	Msa0292050:intron	35.0%
!	AAAGTTTTTGCCAATGCATG+AGG	+	chr2_3:40813078-40813097	Msa0292050:CDS	35.0%
!	CATCTTTTGTAGGTAATGCA+GGG	-	chr2_3:40813110-40813129	None:intergenic	35.0%
	CTTGCAATTTGATGCAACAT+AGG	+	chr2_3:40813134-40813153	Msa0292050:three_prime_UTR	35.0%
!!!	AGTGGATTGGTTGTTCGTTT+TGG	+	chr2_3:40811948-40811967	Msa0292050:CDS	40.0%
!!	AATGGATTTTGTGCCAACAG+TGG	+	chr2_3:40811980-40811999	Msa0292050:CDS	40.0%
!	ATGGATTTTGTGCCAACAGT+GGG	+	chr2_3:40811981-40812000	Msa0292050:CDS	40.0%
	TTCATCTGCATCTAGAAGCA+AGG	+	chr2_3:40812094-40812113	Msa0292050:CDS	40.0%
	GCAAACTCAGGATACTTGAA+TGG	-	chr2_3:40812279-40812298	None:intergenic	40.0%
	AATTGTTACTGAAGGGTCAG+AGG	+	chr2_3:40812593-40812612	Msa0292050:CDS	40.0%
	ATTGTTACTGAAGGGTCAGA+GGG	+	chr2_3:40812594-40812613	Msa0292050:CDS	40.0%
!	GGGCTTTATATATCACACCA+AGG	+	chr2_3:40812614-40812633	Msa0292050:CDS	40.0%
	GCAGGTTGTAAAACTTGAGA+CGG	+	chr2_3:40812761-40812780	Msa0292050:intron	40.0%
	CAGGTTGTAAAACTTGAGAC+GGG	+	chr2_3:40812762-40812781	Msa0292050:intron	40.0%
!	ATTTTGCGGGCAGTATTAGA+GGG	+	chr2_3:40812857-40812876	Msa0292050:CDS	40.0%
	TTATAGGATTCTCTACAGCG+TGG	+	chr2_3:40812912-40812931	Msa0292050:CDS	40.0%
	TTCTGACCCAAGTATTTGCA+CGG	+	chr2_3:40812936-40812955	Msa0292050:CDS	40.0%
	CGAATTACCGTGCAAATACT+TGG	-	chr2_3:40812946-40812965	None:intergenic	40.0%
!	GCATCTTTTGTAGGTAATGC+AGG	-	chr2_3:40813111-40813130	None:intergenic	40.0%
!	TGCAAGACAGCATCTTTTGT+AGG	-	chr2_3:40813120-40813139	None:intergenic	40.0%
	TAAATGCCACCCCATTAAGT+GGG	-	chr2_3:40813384-40813403	None:intergenic	40.0%
!!!	AGTGGATTGGTTGTTCGTTT+TGG	+	chr2_3:40811948-40811967	Msa0292050:CDS	40.0%
!!	AATGGATTTTGTGCCAACAG+TGG	+	chr2_3:40811980-40811999	Msa0292050:CDS	40.0%
!	ATGGATTTTGTGCCAACAGT+GGG	+	chr2_3:40811981-40812000	Msa0292050:CDS	40.0%
	TTCATCTGCATCTAGAAGCA+AGG	+	chr2_3:40812094-40812113	Msa0292050:CDS	40.0%
	GCAAACTCAGGATACTTGAA+TGG	-	chr2_3:40812279-40812298	None:intergenic	40.0%
	AATTGTTACTGAAGGGTCAG+AGG	+	chr2_3:40812593-40812612	Msa0292050:CDS	40.0%
	ATTGTTACTGAAGGGTCAGA+GGG	+	chr2_3:40812594-40812613	Msa0292050:CDS	40.0%
!	GGGCTTTATATATCACACCA+AGG	+	chr2_3:40812614-40812633	Msa0292050:CDS	40.0%
	GCAGGTTGTAAAACTTGAGA+CGG	+	chr2_3:40812761-40812780	Msa0292050:intron	40.0%
	CAGGTTGTAAAACTTGAGAC+GGG	+	chr2_3:40812762-40812781	Msa0292050:intron	40.0%
!	ATTTTGCGGGCAGTATTAGA+GGG	+	chr2_3:40812857-40812876	Msa0292050:CDS	40.0%
	TTATAGGATTCTCTACAGCG+TGG	+	chr2_3:40812912-40812931	Msa0292050:CDS	40.0%
	TTCTGACCCAAGTATTTGCA+CGG	+	chr2_3:40812936-40812955	Msa0292050:CDS	40.0%
	CGAATTACCGTGCAAATACT+TGG	-	chr2_3:40812946-40812965	None:intergenic	40.0%
!	GCATCTTTTGTAGGTAATGC+AGG	-	chr2_3:40813111-40813130	None:intergenic	40.0%
!	TGCAAGACAGCATCTTTTGT+AGG	-	chr2_3:40813120-40813139	None:intergenic	40.0%
	TAAATGCCACCCCATTAAGT+GGG	-	chr2_3:40813384-40813403	None:intergenic	40.0%
	TTTCTTGAAAGCAGGCGCAT+CGG	-	chr2_3:40812021-40812040	None:intergenic	45.0%
	AGGGTCTTCAGCAACTTTCA+GGG	-	chr2_3:40812304-40812323	None:intergenic	45.0%
	TGACTTTGGCAAGCTTACCT+TGG	-	chr2_3:40812634-40812653	None:intergenic	45.0%
	GACACTCAATGACGAATAGC+AGG	+	chr2_3:40812743-40812762	Msa0292050:intron	45.0%
!	GATTTTGCGGGCAGTATTAG+AGG	+	chr2_3:40812856-40812875	Msa0292050:CDS	45.0%
!	TTTTGCGGGCAGTATTAGAG+GGG	+	chr2_3:40812858-40812877	Msa0292050:CDS	45.0%
	ATTAGAGGGGTTCACACTAC+TGG	+	chr2_3:40812871-40812890	Msa0292050:CDS	45.0%
	GTAAATGCCACCCCATTAAG+TGG	-	chr2_3:40813385-40813404	None:intergenic	45.0%
	TTTCTTGAAAGCAGGCGCAT+CGG	-	chr2_3:40812021-40812040	None:intergenic	45.0%
	AGGGTCTTCAGCAACTTTCA+GGG	-	chr2_3:40812304-40812323	None:intergenic	45.0%
	TGACTTTGGCAAGCTTACCT+TGG	-	chr2_3:40812634-40812653	None:intergenic	45.0%
	GACACTCAATGACGAATAGC+AGG	+	chr2_3:40812743-40812762	Msa0292050:intron	45.0%
!	GATTTTGCGGGCAGTATTAG+AGG	+	chr2_3:40812856-40812875	Msa0292050:CDS	45.0%
!	TTTTGCGGGCAGTATTAGAG+GGG	+	chr2_3:40812858-40812877	Msa0292050:CDS	45.0%
	ATTAGAGGGGTTCACACTAC+TGG	+	chr2_3:40812871-40812890	Msa0292050:CDS	45.0%
	GTAAATGCCACCCCATTAAG+TGG	-	chr2_3:40813385-40813404	None:intergenic	45.0%
!!	ATTAAATTAAATTATTATAC+AGG	-	chr2_3:40812203-40812222	None:intergenic	5.0%
!!	ATTAAATTAAATTATTATAC+AGG	-	chr2_3:40812203-40812222	None:intergenic	5.0%
	CCAGGAGCTTTCTTGAAAGC+AGG	-	chr2_3:40812029-40812048	None:intergenic	50.0%
	CCTGCTTTCAAGAAAGCTCC+TGG	+	chr2_3:40812026-40812045	Msa0292050:CDS	50.0%
	GCTTTCAAGAAAGCTCCTGG+TGG	+	chr2_3:40812029-40812048	Msa0292050:CDS	50.0%
	ACTTTCAGGGCAGCAAACTC+AGG	-	chr2_3:40812291-40812310	None:intergenic	50.0%
	CAGGGTCTTCAGCAACTTTC+AGG	-	chr2_3:40812305-40812324	None:intergenic	50.0%
	CTGAAAGTTGCTGAAGACCC+TGG	+	chr2_3:40812303-40812322	Msa0292050:intron	50.0%
	AAAGTTGCTGAAGACCCTGG+TGG	+	chr2_3:40812306-40812325	Msa0292050:intron	50.0%
!	CTTGAGACGGGTTTGCTTTG+AGG	+	chr2_3:40812774-40812793	Msa0292050:intron	50.0%
	AGGGATTGCTCCTCATGCAT+TGG	-	chr2_3:40813091-40813110	None:intergenic	50.0%
	TCTTGCCACGCCCACTTAAT+GGG	+	chr2_3:40813371-40813390	Msa0292050:three_prime_UTR	50.0%
	CCAGGAGCTTTCTTGAAAGC+AGG	-	chr2_3:40812029-40812048	None:intergenic	50.0%
	CCTGCTTTCAAGAAAGCTCC+TGG	+	chr2_3:40812026-40812045	Msa0292050:CDS	50.0%
	GCTTTCAAGAAAGCTCCTGG+TGG	+	chr2_3:40812029-40812048	Msa0292050:CDS	50.0%
	ACTTTCAGGGCAGCAAACTC+AGG	-	chr2_3:40812291-40812310	None:intergenic	50.0%
	CAGGGTCTTCAGCAACTTTC+AGG	-	chr2_3:40812305-40812324	None:intergenic	50.0%
	CTGAAAGTTGCTGAAGACCC+TGG	+	chr2_3:40812303-40812322	Msa0292050:intron	50.0%
	AAAGTTGCTGAAGACCCTGG+TGG	+	chr2_3:40812306-40812325	Msa0292050:intron	50.0%
!	CTTGAGACGGGTTTGCTTTG+AGG	+	chr2_3:40812774-40812793	Msa0292050:intron	50.0%
	AGGGATTGCTCCTCATGCAT+TGG	-	chr2_3:40813091-40813110	None:intergenic	50.0%
	TCTTGCCACGCCCACTTAAT+GGG	+	chr2_3:40813371-40813390	Msa0292050:three_prime_UTR	50.0%
	AGAGACACTGCACCCACTGT+TGG	-	chr2_3:40811996-40812015	None:intergenic	55.0%
	AGACCCTGGTGGCATTCTCA+AGG	+	chr2_3:40812317-40812336	Msa0292050:intron	55.0%
!	TGGCCTTGAGAATGCCACCA+GGG	-	chr2_3:40812323-40812342	None:intergenic	55.0%
!!	TTGGCCTTGAGAATGCCACC+AGG	-	chr2_3:40812324-40812343	None:intergenic	55.0%
	TGGTGGCATTCTCAAGGCCA+AGG	+	chr2_3:40812323-40812342	Msa0292050:intron	55.0%
	GGGGTTCACACTACTGGTGA+TGG	+	chr2_3:40812877-40812896	Msa0292050:CDS	55.0%
	CTCTTGCCACGCCCACTTAA+TGG	+	chr2_3:40813370-40813389	Msa0292050:three_prime_UTR	55.0%
	CTTGCCACGCCCACTTAATG+GGG	+	chr2_3:40813372-40813391	Msa0292050:three_prime_UTR	55.0%
	AGAGACACTGCACCCACTGT+TGG	-	chr2_3:40811996-40812015	None:intergenic	55.0%
	AGACCCTGGTGGCATTCTCA+AGG	+	chr2_3:40812317-40812336	Msa0292050:intron	55.0%
!	TGGCCTTGAGAATGCCACCA+GGG	-	chr2_3:40812323-40812342	None:intergenic	55.0%
!!	TTGGCCTTGAGAATGCCACC+AGG	-	chr2_3:40812324-40812343	None:intergenic	55.0%
	TGGTGGCATTCTCAAGGCCA+AGG	+	chr2_3:40812323-40812342	Msa0292050:intron	55.0%
	GGGGTTCACACTACTGGTGA+TGG	+	chr2_3:40812877-40812896	Msa0292050:CDS	55.0%
	CTCTTGCCACGCCCACTTAA+TGG	+	chr2_3:40813370-40813389	Msa0292050:three_prime_UTR	55.0%
	CTTGCCACGCCCACTTAATG+GGG	+	chr2_3:40813372-40813391	Msa0292050:three_prime_UTR	55.0%
!!	ACGTTTGCAGGAGCACCACC+AGG	-	chr2_3:40812047-40812066	None:intergenic	60.0%
!	TGGTGGTGCTCCTGCAAACG+TGG	+	chr2_3:40812046-40812065	Msa0292050:CDS	60.0%
	AAGCCACCTGCCACGTTTGC+AGG	-	chr2_3:40812059-40812078	None:intergenic	60.0%
	GGCAGGTGGCTTCTCTGAGT+CGG	+	chr2_3:40812067-40812086	Msa0292050:CDS	60.0%
	GCAGGTGGCTTCTCTGAGTC+GGG	+	chr2_3:40812068-40812087	Msa0292050:CDS	60.0%
	CAGGTGGCTTCTCTGAGTCG+GGG	+	chr2_3:40812069-40812088	Msa0292050:CDS	60.0%
	AGGTGGCTTCTCTGAGTCGG+GGG	+	chr2_3:40812070-40812089	Msa0292050:CDS	60.0%
!!	ACGTTTGCAGGAGCACCACC+AGG	-	chr2_3:40812047-40812066	None:intergenic	60.0%
!	TGGTGGTGCTCCTGCAAACG+TGG	+	chr2_3:40812046-40812065	Msa0292050:CDS	60.0%
	AAGCCACCTGCCACGTTTGC+AGG	-	chr2_3:40812059-40812078	None:intergenic	60.0%
	GGCAGGTGGCTTCTCTGAGT+CGG	+	chr2_3:40812067-40812086	Msa0292050:CDS	60.0%
	GCAGGTGGCTTCTCTGAGTC+GGG	+	chr2_3:40812068-40812087	Msa0292050:CDS	60.0%
	CAGGTGGCTTCTCTGAGTCG+GGG	+	chr2_3:40812069-40812088	Msa0292050:CDS	60.0%
	AGGTGGCTTCTCTGAGTCGG+GGG	+	chr2_3:40812070-40812089	Msa0292050:CDS	60.0%
	GGTGCTCCTGCAAACGTGGC+AGG	+	chr2_3:40812050-40812069	Msa0292050:CDS	65.0%
	GCTCCTGCAAACGTGGCAGG+TGG	+	chr2_3:40812053-40812072	Msa0292050:CDS	65.0%
	GGTGGCTTCTCTGAGTCGGG+GGG	+	chr2_3:40812071-40812090	Msa0292050:CDS	65.0%
	GCCACGCCCACTTAATGGGG+TGG	+	chr2_3:40813375-40813394	Msa0292050:three_prime_UTR	65.0%
	GCCACCCCATTAAGTGGGCG+TGG	-	chr2_3:40813379-40813398	None:intergenic	65.0%
	GGTGCTCCTGCAAACGTGGC+AGG	+	chr2_3:40812050-40812069	Msa0292050:CDS	65.0%
	GCTCCTGCAAACGTGGCAGG+TGG	+	chr2_3:40812053-40812072	Msa0292050:CDS	65.0%
	GGTGGCTTCTCTGAGTCGGG+GGG	+	chr2_3:40812071-40812090	Msa0292050:CDS	65.0%
	GCCACGCCCACTTAATGGGG+TGG	+	chr2_3:40813375-40813394	Msa0292050:three_prime_UTR	65.0%
	GCCACCCCATTAAGTGGGCG+TGG	-	chr2_3:40813379-40813398	None:intergenic	65.0%

Chromosome	Type	Strat	End	Strand	Name
chr2_3	gene	40811936	40813425	40811936	ID=Msa0292050;Name=Msa0292050
chr2_3	mRNA	40811936	40813425	40811936	ID=Msa0292050-mRNA-1;Parent=Msa0292050;Name=Msa0292050-mRNA-1;_AED=0.19;_eAED=0.22;_QI=0\|0.66\|0.75\|1\|1\|0.75\|4\|327\|150
chr2_3	exon	40811936	40812115	40811936	ID=Msa0292050-mRNA-1:exon:13146;Parent=Msa0292050-mRNA-1
chr2_3	exon	40812516	40812635	40812516	ID=Msa0292050-mRNA-1:exon:13147;Parent=Msa0292050-mRNA-1
chr2_3	exon	40812856	40812957	40812856	ID=Msa0292050-mRNA-1:exon:13148;Parent=Msa0292050-mRNA-1
chr2_3	exon	40813048	40813425	40813048	ID=Msa0292050-mRNA-1:exon:13149;Parent=Msa0292050-mRNA-1
chr2_3	CDS	40811936	40812115	40811936	ID=Msa0292050-mRNA-1:cds;Parent=Msa0292050-mRNA-1
chr2_3	CDS	40812516	40812635	40812516	ID=Msa0292050-mRNA-1:cds;Parent=Msa0292050-mRNA-1
chr2_3	CDS	40812856	40812957	40812856	ID=Msa0292050-mRNA-1:cds;Parent=Msa0292050-mRNA-1
chr2_3	CDS	40813048	40813098	40813048	ID=Msa0292050-mRNA-1:cds;Parent=Msa0292050-mRNA-1
chr2_3	three_prime_UTR	40813099	40813425	40813099	ID=Msa0292050-mRNA-1:three_prime_utr;Parent=Msa0292050-mRNA-1

Gene Sequence

>Msa0292050

TGCAAAGAAACAAGTGGATTGGTTGTTCGTTTTGGTAAAATGTTAATGGATTTTGTGCCAACAGTGGGTGCAGTGTCTCTAGCCGATGCGCCTGCTTTCAAGAAAGCTCCTGGTGGTGCTCCTGCAAACGTGGCAGGTGGCTTCTCTGAGTCGGGGGGTTCATCTGCATCTAGAAGCAAGATCAGTAAAGATGATATTACTTTTTGGACTGGTGGTGATGTATTAAACATGCTTATTCACCCTAAAATCATGCTTCTAATTGTTACTGAAGGGTCAGAGGGCTTTATATATCACACCAAGGATTTTGCGGGCAGTATTAGAGGGGTTCACACTACTGGTGATGGTGATGCATTTAATTATAGGATTCTCTACAGCGTGGCTTCTGACCCAAGTATTTGCACGAATCAGAAACGTCTCCGAGAAGTTTTCAAAAAAGTTTTTGCCAATGCATGA

Protein sequence

>Msa0292050

CKETSGLVVRFGKMLMDFVPTVGAVSLADAPAFKKAPGGAPANVAGGFSESGGSSASRSKISKDDITFWTGGDVLNMLIHPKIMLLIVTEGSEGFIYHTKDFAGSIRGVHTTGDGDAFNYRILYSVASDPSICTNQKRLREVFKKVFANA*