Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0463850 | AES71259.1 | 98.592 | 71 | 1 | 0 | 1 | 71 | 1 | 71 | 1.05e-41 | 140 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0463850 | G7J2F4 | 98.592 | 71 | 1 | 0 | 1 | 71 | 1 | 71 | 5.01e-42 | 140 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0008200 | Msa0463850 | 0.807801 | 4.233404e-50 | -8.615850e-47 |
| Msa0020390 | Msa0463850 | 0.834449 | 2.978405e-56 | -8.615850e-47 |
| Msa0024400 | Msa0463850 | 0.811855 | 5.681128e-51 | -8.615850e-47 |
| Msa0029630 | Msa0463850 | 0.803154 | 3.992116e-49 | -8.615850e-47 |
| Msa0033880 | Msa0463850 | 0.810639 | 1.043177e-50 | -8.615850e-47 |
| Msa0041690 | Msa0463850 | 0.808606 | 2.851689e-50 | -8.615850e-47 |
| Msa0072420 | Msa0463850 | 0.811378 | 7.214712e-51 | -8.615850e-47 |
| Msa0080730 | Msa0463850 | 0.803945 | 2.735907e-49 | -8.615850e-47 |
| Msa0090520 | Msa0463850 | 0.811929 | 5.473854e-51 | -8.615850e-47 |
| Msa0090550 | Msa0463850 | 0.809507 | 1.829083e-50 | -8.615850e-47 |
| Msa0091610 | Msa0463850 | 0.807463 | 4.992994e-50 | -8.615850e-47 |
| Msa0093010 | Msa0463850 | 0.815929 | 7.186609e-52 | -8.615850e-47 |
| Msa0103790 | Msa0463850 | 0.809575 | 1.768593e-50 | -8.615850e-47 |
| Msa0106620 | Msa0463850 | 0.808624 | 2.826838e-50 | -8.615850e-47 |
| Msa0106710 | Msa0463850 | 0.821968 | 3.044135e-53 | -8.615850e-47 |
| Msa0120880 | Msa0463850 | 0.821915 | 3.131620e-53 | -8.615850e-47 |
| Msa0127850 | Msa0463850 | 0.811400 | 7.134914e-51 | -8.615850e-47 |
| Msa0136120 | Msa0463850 | 0.822715 | 2.042043e-53 | -8.615850e-47 |
| Msa0137990 | Msa0463850 | 0.807969 | 3.898723e-50 | -8.615850e-47 |
| Msa0138360 | Msa0463850 | 0.806597 | 7.612893e-50 | -8.615850e-47 |
| Msa0139670 | Msa0463850 | 0.842773 | 2.107508e-58 | -8.615850e-47 |
| Msa0147980 | Msa0463850 | 0.826854 | 2.158855e-54 | -8.615850e-47 |
| Msa0150260 | Msa0463850 | 0.818721 | 1.690783e-52 | -8.615850e-47 |
| Msa0163510 | Msa0463850 | 0.825227 | 5.258018e-54 | -8.615850e-47 |
| Msa0166460 | Msa0463850 | 0.804516 | 2.080995e-49 | -8.615850e-47 |
| Msa0167980 | Msa0463850 | 0.816681 | 4.877582e-52 | -8.615850e-47 |
| Msa0173800 | Msa0463850 | 0.838806 | 2.309917e-57 | -8.615850e-47 |
| Msa0174000 | Msa0463850 | 0.802960 | 4.378153e-49 | -8.615850e-47 |
| Msa0183870 | Msa0463850 | 0.839657 | 1.390026e-57 | -8.615850e-47 |
| Msa0183900 | Msa0463850 | 0.802914 | 4.473733e-49 | -8.615850e-47 |
| Msa0188350 | Msa0463850 | 0.812824 | 3.490807e-51 | -8.615850e-47 |
| Msa0191080 | Msa0463850 | 0.811342 | 7.346022e-51 | -8.615850e-47 |
| Msa0192640 | Msa0463850 | 0.818013 | 2.445993e-52 | -8.615850e-47 |
| Msa0204960 | Msa0463850 | 0.872881 | 2.261665e-67 | -8.615850e-47 |
| Msa0206690 | Msa0463850 | 0.821834 | 3.269603e-53 | -8.615850e-47 |
| Msa0207670 | Msa0463850 | 0.831062 | 2.065077e-55 | -8.615850e-47 |
| Msa0209350 | Msa0463850 | 0.802439 | 5.608500e-49 | -8.615850e-47 |
| Msa0209500 | Msa0463850 | 0.805858 | 1.089871e-49 | -8.615850e-47 |
| Msa0214550 | Msa0463850 | 0.826087 | 3.288013e-54 | -8.615850e-47 |
| Msa0217670 | Msa0463850 | 0.853321 | 2.582341e-61 | -8.615850e-47 |
| Msa0223330 | Msa0463850 | 0.846019 | 2.825274e-59 | -8.615850e-47 |
| Msa0233370 | Msa0463850 | 0.820810 | 5.633055e-53 | -8.615850e-47 |
| Msa0369610 | Msa0463850 | 0.922454 | 9.630880e-89 | -8.615850e-47 |
| Msa0382370 | Msa0463850 | 0.828136 | 1.063287e-54 | -8.615850e-47 |
| Msa0384670 | Msa0463850 | 0.827077 | 1.908664e-54 | -8.615850e-47 |
| Msa0385500 | Msa0463850 | 0.879128 | 1.603872e-69 | -8.615850e-47 |
| Msa0390530 | Msa0463850 | 0.801017 | 1.097892e-48 | -8.615850e-47 |
| Msa0395980 | Msa0463850 | 0.809184 | 2.145337e-50 | -8.615850e-47 |
| Msa0417030 | Msa0463850 | 0.916023 | 2.929716e-85 | -8.615850e-47 |
| Msa0419720 | Msa0463850 | 0.849442 | 3.226173e-60 | -8.615850e-47 |
| Msa0426580 | Msa0463850 | 0.805863 | 1.087192e-49 | -8.615850e-47 |
| Msa0432160 | Msa0463850 | 0.810913 | 9.101098e-51 | -8.615850e-47 |
| Msa0434570 | Msa0463850 | 0.832188 | 1.089831e-55 | -8.615850e-47 |
| Msa0434770 | Msa0463850 | 0.829125 | 6.132376e-55 | -8.615850e-47 |
| Msa0440510 | Msa0463850 | 0.805831 | 1.104041e-49 | -8.615850e-47 |
| Msa0443430 | Msa0463850 | 0.805591 | 1.240041e-49 | -8.615850e-47 |
| Msa0450400 | Msa0463850 | -0.828470 | 8.831231e-55 | -8.615850e-47 |
| Msa0463850 | Msa0476680 | 0.811478 | 6.863519e-51 | -8.615850e-47 |
| Msa0463850 | Msa0482940 | 0.840631 | 7.739517e-58 | -8.615850e-47 |
| Msa0463850 | Msa0484740 | 0.809896 | 1.508744e-50 | -8.615850e-47 |
| Msa0463850 | Msa0491000 | 0.827127 | 1.857228e-54 | -8.615850e-47 |
| Msa0463850 | Msa0496450 | 0.805563 | 1.256776e-49 | -8.615850e-47 |
| Msa0463850 | Msa0511770 | 0.860685 | 1.739040e-63 | -8.615850e-47 |
| Msa0463850 | Msa0521010 | 0.812071 | 5.097425e-51 | -8.615850e-47 |
| Msa0463850 | Msa0531250 | 0.840457 | 8.595934e-58 | -8.615850e-47 |
| Msa0463850 | Msa0542290 | 0.809771 | 1.605079e-50 | -8.615850e-47 |
| Msa0463850 | Msa0542560 | 0.827955 | 1.175613e-54 | -8.615850e-47 |
| Msa0463850 | Msa0547160 | 0.833883 | 4.128860e-56 | -8.615850e-47 |
| Msa0463850 | Msa0547990 | 0.832546 | 8.889816e-56 | -8.615850e-47 |
| Msa0463850 | Msa0581110 | 0.802083 | 6.637189e-49 | -8.615850e-47 |
| Msa0463850 | Msa0588090 | 0.823417 | 1.400876e-53 | -8.615850e-47 |
| Msa0463850 | Msa0600080 | 0.834604 | 2.722570e-56 | -8.615850e-47 |
| Msa0463850 | Msa0600450 | 0.815361 | 9.618474e-52 | -8.615850e-47 |
| Msa0463850 | Msa0604290 | 0.818446 | 1.951489e-52 | -8.615850e-47 |
| Msa0463850 | Msa0615580 | 0.807327 | 5.335873e-50 | -8.615850e-47 |
| Msa0463850 | Msa0617170 | 0.821904 | 3.151044e-53 | -8.615850e-47 |
| Msa0463850 | Msa0622790 | 0.824839 | 6.494360e-54 | -8.615850e-47 |
| Msa0463850 | Msa0628420 | 0.835823 | 1.340888e-56 | -8.615850e-47 |
| Msa0463850 | Msa0629240 | 0.810527 | 1.102673e-50 | -8.615850e-47 |
| Msa0463850 | Msa0640940 | 0.813775 | 2.157428e-51 | -8.615850e-47 |
| Msa0463850 | Msa0642970 | 0.827586 | 1.441669e-54 | -8.615850e-47 |
| Msa0463850 | Msa0644030 | 0.821370 | 4.185491e-53 | -8.615850e-47 |
| Msa0463850 | Msa0647820 | 0.803638 | 3.168500e-49 | -8.615850e-47 |
| Msa0463850 | Msa0651560 | 0.812741 | 3.639179e-51 | -8.615850e-47 |
| Msa0463850 | Msa0662630 | 0.827533 | 1.484153e-54 | -8.615850e-47 |
| Msa0463850 | Msa0679360 | 0.820590 | 6.328239e-53 | -8.615850e-47 |
| Msa0463850 | Msa0682680 | 0.844641 | 6.665165e-59 | -8.615850e-47 |
| Msa0463850 | Msa0690310 | 0.803112 | 4.071460e-49 | -8.615850e-47 |
| Msa0463850 | Msa0709120 | 0.842529 | 2.446739e-58 | -8.615850e-47 |
| Msa0463850 | Msa0721280 | 0.809722 | 1.644591e-50 | -8.615850e-47 |
| Msa0463850 | Msa0746170 | 0.806543 | 7.817819e-50 | -8.615850e-47 |
| Msa0463850 | Msa0746210 | 0.804297 | 2.311203e-49 | -8.615850e-47 |
| Msa0463850 | Msa0752700 | 0.804640 | 1.960120e-49 | -8.615850e-47 |
| Msa0463850 | Msa0756380 | 0.803143 | 4.012719e-49 | -8.615850e-47 |
| Msa0463850 | Msa0794970 | 0.803833 | 2.886324e-49 | -8.615850e-47 |
| Msa0463850 | Msa0800370 | 0.807431 | 5.071104e-50 | -8.615850e-47 |
| Msa0463850 | Msa0822500 | 0.800493 | 1.404501e-48 | -8.615850e-47 |
| Msa0463850 | Msa0829220 | 0.808060 | 3.728410e-50 | -8.615850e-47 |
| Msa0463850 | Msa0831100 | 0.812643 | 3.824388e-51 | -8.615850e-47 |
| Msa0463850 | Msa0833190 | -0.826688 | 2.364213e-54 | -8.615850e-47 |
| Msa0463850 | Msa0844280 | 0.803553 | 3.300052e-49 | -8.615850e-47 |
| Msa0463850 | Msa0890550 | 0.814556 | 1.450686e-51 | -8.615850e-47 |
| Msa0463850 | Msa0892640 | 0.830639 | 2.621666e-55 | -8.615850e-47 |
| Msa0463850 | Msa0897200 | 0.845867 | 3.107235e-59 | -8.615850e-47 |
| Msa0463850 | Msa0918390 | 0.816456 | 5.477864e-52 | -8.615850e-47 |
| Msa0463850 | Msa0923780 | 0.822649 | 2.115573e-53 | -8.615850e-47 |
| Msa0463850 | Msa0933380 | 0.835523 | 1.596907e-56 | -8.615850e-47 |
| Msa0463850 | Msa0934140 | 0.822096 | 2.843469e-53 | -8.615850e-47 |
| Msa0463850 | Msa0944200 | 0.843121 | 1.702457e-58 | -8.615850e-47 |
| Msa0463850 | Msa0958000 | 0.846663 | 1.886064e-59 | -8.615850e-47 |
| Msa0463850 | Msa0971160 | 0.829711 | 4.418472e-55 | -8.615850e-47 |
| Msa0463850 | Msa0974950 | 0.809385 | 1.942184e-50 | -8.615850e-47 |
| Msa0463850 | Msa0980540 | 0.844079 | 9.440612e-59 | -8.615850e-47 |
| Msa0463850 | Msa0994370 | 0.808006 | 3.828869e-50 | -8.615850e-47 |
| Msa0463850 | Msa1002960 | 0.816806 | 4.573685e-52 | -8.615850e-47 |
| Msa0463850 | Msa1021520 | 0.804156 | 2.472943e-49 | -8.615850e-47 |
| Msa0463850 | Msa1027300 | 0.803512 | 3.364773e-49 | -8.615850e-47 |
| Msa0463850 | Msa1037520 | 0.852178 | 5.472614e-61 | -8.615850e-47 |
| Msa0463850 | Msa1051330 | 0.804697 | 1.907318e-49 | -8.615850e-47 |
| Msa0463850 | Msa1089450 | 0.831108 | 2.011600e-55 | -8.615850e-47 |
| Msa0463850 | Msa1096070 | 0.801364 | 9.321930e-49 | -8.615850e-47 |
| Msa0463850 | Msa1123350 | 0.828089 | 1.091004e-54 | -8.615850e-47 |
| Msa0463850 | Msa1127590 | 0.823950 | 1.050835e-53 | -8.615850e-47 |
| Msa0463850 | Msa1130400 | 0.814651 | 1.382005e-51 | -8.615850e-47 |
| Msa0463850 | Msa1154490 | 0.800045 | 1.732683e-48 | -8.615850e-47 |
| Msa0463850 | Msa1165780 | 0.817552 | 3.108977e-52 | -8.615850e-47 |
| Msa0463850 | Msa1175200 | 0.807723 | 4.397128e-50 | -8.615850e-47 |
| Msa0463850 | Msa1178580 | 0.813135 | 2.982920e-51 | -8.615850e-47 |
| Msa0463850 | Msa1202580 | 0.802738 | 4.864368e-49 | -8.615850e-47 |
| Msa0463850 | Msa1206650 | 0.815851 | 7.478662e-52 | -8.615850e-47 |
| Msa0463850 | Msa1208790 | 0.814442 | 1.537700e-51 | -8.615850e-47 |
| Msa0463850 | Msa1211830 | 0.803242 | 3.827532e-49 | -8.615850e-47 |
| Msa0463850 | Msa1233850 | 0.825912 | 3.617879e-54 | -8.615850e-47 |
| Msa0463850 | Msa1234620 | 0.832359 | 9.890048e-56 | -8.615850e-47 |
| Msa0463850 | Msa1254560 | 0.832499 | 9.128423e-56 | -8.615850e-47 |
| Msa0463850 | Msa1254730 | 0.801218 | 9.988729e-49 | -8.615850e-47 |
| Msa0463850 | Msa1258980 | 0.804654 | 1.947667e-49 | -8.615850e-47 |
| Msa0463850 | Msa1262890 | 0.813906 | 2.018764e-51 | -8.615850e-47 |
| Msa0463850 | Msa1264210 | 0.801040 | 1.086325e-48 | -8.615850e-47 |
| Msa0463850 | Msa1265590 | 0.825883 | 3.676183e-54 | -8.615850e-47 |
| Msa0463850 | Msa1271130 | 0.827508 | 1.504789e-54 | -8.615850e-47 |
| Msa0463850 | Msa1276150 | 0.810547 | 1.091785e-50 | -8.615850e-47 |
| Msa0463850 | Msa1276970 | 0.821025 | 5.026975e-53 | -8.615850e-47 |
| Msa0463850 | Msa1296830 | 0.811075 | 8.394305e-51 | -8.615850e-47 |
| Msa0463850 | Msa1307180 | 0.819901 | 9.105775e-53 | -8.615850e-47 |
| Msa0463850 | Msa1316360 | 0.822839 | 1.911425e-53 | -8.615850e-47 |
| Msa0463850 | Msa1330630 | 0.809758 | 1.615419e-50 | -8.615850e-47 |
| Msa0463850 | Msa1336560 | 0.807072 | 6.042175e-50 | -8.615850e-47 |
| Msa0463850 | Msa1342630 | 0.817916 | 2.572678e-52 | -8.615850e-47 |
| Msa0463850 | Msa1344310 | 0.810806 | 9.595518e-51 | -8.615850e-47 |
| Msa0463850 | Msa1351540 | 0.830747 | 2.467184e-55 | -8.615850e-47 |
| Msa0463850 | Msa1357890 | 0.812079 | 5.078273e-51 | -8.615850e-47 |
| Msa0463850 | Msa1359270 | 0.818083 | 2.358260e-52 | -8.615850e-47 |
| Msa0463850 | Msa1362420 | 0.810836 | 9.456742e-51 | -8.615850e-47 |
| Msa0463850 | Msa1369690 | 0.801052 | 1.080167e-48 | -8.615850e-47 |
| Msa0463850 | Msa1370590 | 0.841133 | 5.716879e-58 | -8.615850e-47 |
| Msa0463850 | Msa1376650 | 0.809174 | 2.155453e-50 | -8.615850e-47 |
| Msa0463850 | Msa1384100 | 0.841683 | 4.094854e-58 | -8.615850e-47 |
| Msa0463850 | Msa1398090 | 0.814359 | 1.603781e-51 | -8.615850e-47 |
| Msa0463850 | Msa1407190 | 0.815302 | 9.911088e-52 | -8.615850e-47 |
| Msa0463850 | Msa1411950 | 0.836713 | 7.962308e-57 | -8.615850e-47 |
| Msa0463850 | Msa1414820 | 0.801191 | 1.011635e-48 | -8.615850e-47 |
| Msa0463850 | Msa1416370 | 0.801444 | 8.978413e-49 | -8.615850e-47 |
| Msa0463850 | Msa1432130 | 0.809971 | 1.453688e-50 | -8.615850e-47 |
| Msa0463850 | Msa1433600 | 0.800336 | 1.511819e-48 | -8.615850e-47 |
| Msa0463850 | Msa1444120 | 0.838611 | 2.595312e-57 | -8.615850e-47 |
| Msa0463850 | Msa1446080 | 0.821897 | 3.161912e-53 | -8.615850e-47 |
| Msa0463850 | Msa1454680 | 0.838771 | 2.358499e-57 | -8.615850e-47 |
| Msa0463850 | Msa1458290 | 0.820625 | 6.214409e-53 | -8.615850e-47 |
| Msa0463850 | Msa1459960 | 0.803447 | 3.471093e-49 | -8.615850e-47 |
| Msa0240900 | Msa0463850 | 0.810140 | 1.336753e-50 | -8.615850e-47 |
| Msa0241830 | Msa0463850 | 0.825619 | 4.245967e-54 | -8.615850e-47 |
| Msa0244970 | Msa0463850 | 0.821005 | 5.081478e-53 | -8.615850e-47 |
| Msa0244980 | Msa0463850 | 0.862166 | 6.143923e-64 | -8.615850e-47 |
| Msa0245430 | Msa0463850 | 0.813199 | 2.888638e-51 | -8.615850e-47 |
| Msa0245580 | Msa0463850 | 0.820285 | 7.437480e-53 | -8.615850e-47 |
| Msa0249580 | Msa0463850 | 0.847014 | 1.511545e-59 | -8.615850e-47 |
| Msa0257490 | Msa0463850 | 0.866796 | 2.194582e-65 | -8.615850e-47 |
| Msa0269470 | Msa0463850 | 0.826648 | 2.417655e-54 | -8.615850e-47 |
| Msa0275360 | Msa0463850 | 0.801371 | 9.292934e-49 | -8.615850e-47 |
| Msa0279850 | Msa0463850 | 0.812340 | 4.453362e-51 | -8.615850e-47 |
| Msa0281530 | Msa0463850 | 0.871833 | 5.054210e-67 | -8.615850e-47 |
| Msa0283420 | Msa0463850 | 0.854130 | 1.510364e-61 | -8.615850e-47 |
| Msa0296250 | Msa0463850 | 0.817686 | 2.899876e-52 | -8.615850e-47 |
| Msa0296630 | Msa0463850 | -0.804650 | 1.951160e-49 | -8.615850e-47 |
| Msa0296790 | Msa0463850 | 0.881964 | 1.548247e-70 | -8.615850e-47 |
| Msa0315850 | Msa0463850 | 0.800902 | 1.158811e-48 | -8.615850e-47 |
| Msa0317960 | Msa0463850 | 0.809757 | 1.616181e-50 | -8.615850e-47 |
| Msa0317970 | Msa0463850 | 0.827227 | 1.757816e-54 | -8.615850e-47 |
| Msa0320590 | Msa0463850 | 0.846234 | 2.468413e-59 | -8.615850e-47 |
| Msa0321690 | Msa0463850 | 0.846663 | 1.885310e-59 | -8.615850e-47 |
| Msa0322240 | Msa0463850 | 0.828527 | 8.554761e-55 | -8.615850e-47 |
| Msa0322900 | Msa0463850 | 0.842105 | 3.168939e-58 | -8.615850e-47 |
| Msa0326480 | Msa0463850 | 0.815484 | 9.029729e-52 | -8.615850e-47 |
| Msa0363060 | Msa0463850 | 0.819016 | 1.449035e-52 | -8.615850e-47 |
| Msa0363640 | Msa0463850 | 0.801535 | 8.602093e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0463850 | MtrunA17_Chr3g0114271 | 98.592 | 71 | 1 | 0 | 1 | 71 | 1 | 71 | 9.64e-46 | 140 |
| Msa0463850 | MtrunA17_Chr5g0437891 | 85.507 | 69 | 10 | 0 | 1 | 69 | 1 | 69 | 6.75e-28 | 95.5 |
| Msa0463850 | MtrunA17_Chr1g0198341 | 32.857 | 70 | 47 | 0 | 2 | 71 | 3 | 72 | 2.34e-11 | 53.9 |
| Msa0463850 | MtrunA17_Chr4g0067291 | 44.828 | 58 | 32 | 0 | 7 | 64 | 78 | 135 | 2.96e-11 | 57.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0463850 | AT5G05365.1 | 73.529 | 68 | 18 | 0 | 1 | 68 | 1 | 68 | 1.94e-30 | 102 |
Find 12 sgRNAs with CRISPR-Local
Find 25 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTAAACTAAAATTTCAATTA+TGG | 0.153724 | 3_3:+63406978 | None:intergenic |
| ATTAGAGTCCTTCACAAAAT+TGG | 0.192675 | 3_3:-63407037 | Msa0463850:CDS |
| TAAACTAAAATTTCAATTAT+GGG | 0.274782 | 3_3:+63406979 | None:intergenic |
| TTATATAATATATATGTTCA+TGG | 0.362890 | 3_3:-63406898 | Msa0463850:three_prime_UTR |
| CTGAACAAGGTTATTGTTAC+GGG | 0.372260 | 3_3:-63407082 | Msa0463850:CDS |
| GCTGAACAAGGTTATTGTTA+CGG | 0.424660 | 3_3:-63407083 | Msa0463850:CDS |
| GGTTTAAGCAGCATCTTCAA+AGG | 0.529778 | 3_3:+63407000 | None:intergenic |
| GTTTAAGCAGCATCTTCAAA+GGG | 0.559014 | 3_3:+63407001 | None:intergenic |
| CGTGGACACAAAGCTGAACA+AGG | 0.593500 | 3_3:-63407095 | Msa0463850:CDS |
| CAGGTGGTGGAAGTCAAAGT+CGG | 0.656628 | 3_3:-63407328 | Msa0463850:CDS |
| TTGTATCAAGAAAATCCTCA+AGG | 0.661316 | 3_3:-63407290 | Msa0463850:CDS |
| AGATATTGAAACGTATAACG+TGG | 0.667545 | 3_3:-63407113 | Msa0463850:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAACTAAAATTTCAATTAT+GGG | + | chr3_3:63407350-63407369 | None:intergenic | 10.0% |
| !! | TTATATAATATATATGTTCA+TGG | - | chr3_3:63407428-63407447 | Msa0463850:intron | 10.0% |
| !! | ATATTATATAAGAACAACTA+AGG | + | chr3_3:63407180-63407199 | None:intergenic | 15.0% |
| !! | CTAAACTAAAATTTCAATTA+TGG | + | chr3_3:63407351-63407370 | None:intergenic | 15.0% |
| !! | TAGAAATTTTACAATCAGCA+TGG | - | chr3_3:63406881-63406900 | Msa0463850:three_prime_UTR | 25.0% |
| ! | AACAATAGAAAGATGTTCAA+TGG | + | chr3_3:63406923-63406942 | None:intergenic | 25.0% |
| !!! | AGAACCTTGAATTTTTTTGA+TGG | + | chr3_3:63407062-63407081 | None:intergenic | 25.0% |
| !!! | GTAGCTATGTTAGATTTTTT+GGG | + | chr3_3:63407099-63407118 | None:intergenic | 25.0% |
| !!! | AGTAGCTATGTTAGATTTTT+TGG | + | chr3_3:63407100-63407119 | None:intergenic | 25.0% |
| !!! | TGTTTTTGAGAAAATTAAGC+AGG | + | chr3_3:63407399-63407418 | None:intergenic | 25.0% |
| TTGTATCAAGAAAATCCTCA+AGG | - | chr3_3:63407036-63407055 | Msa0463850:CDS | 30.0% | |
| AAGGCCATCAAAAAAATTCA+AGG | - | chr3_3:63407055-63407074 | Msa0463850:CDS | 30.0% | |
| AGATATTGAAACGTATAACG+TGG | - | chr3_3:63407213-63407232 | Msa0463850:intron | 30.0% | |
| ATTAGAGTCCTTCACAAAAT+TGG | - | chr3_3:63407289-63407308 | Msa0463850:CDS | 30.0% | |
| ! | CATTCTTTCCAATTTTGTGA+AGG | + | chr3_3:63407300-63407319 | None:intergenic | 30.0% |
| TCTTCTTATGTGTCATCATC+AGG | - | chr3_3:63406979-63406998 | Msa0463850:three_prime_UTR | 35.0% | |
| !!! | GAATTTTTTTGATGGCCTTG+AGG | + | chr3_3:63407054-63407073 | None:intergenic | 35.0% |
| GCTGAACAAGGTTATTGTTA+CGG | - | chr3_3:63407243-63407262 | Msa0463850:intron | 35.0% | |
| CTGAACAAGGTTATTGTTAC+GGG | - | chr3_3:63407244-63407263 | Msa0463850:intron | 35.0% | |
| GTTTAAGCAGCATCTTCAAA+GGG | + | chr3_3:63407328-63407347 | None:intergenic | 35.0% | |
| TCTTATGTGTCATCATCAGG+TGG | - | chr3_3:63406982-63407001 | Msa0463850:three_prime_UTR | 40.0% | |
| GGTTTAAGCAGCATCTTCAA+AGG | + | chr3_3:63407329-63407348 | None:intergenic | 40.0% | |
| TATGTGTCATCATCAGGTGG+TGG | - | chr3_3:63406985-63407004 | Msa0463850:exon | 45.0% | |
| !! | CAGGTGGTGGAAGTCAAAGT+CGG | - | chr3_3:63406998-63407017 | Msa0463850:exon | 50.0% |
| CGTGGACACAAAGCTGAACA+AGG | - | chr3_3:63407231-63407250 | Msa0463850:intron | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_3 | gene | 63406860 | 63407488 | 63406860 | ID=Msa0463850;Name=Msa0463850 |
| chr3_3 | mRNA | 63406860 | 63407488 | 63406860 | ID=Msa0463850-mRNA-1;Parent=Msa0463850;Name=Msa0463850-mRNA-1;_AED=0.43;_eAED=0.43;_QI=40|1|1|1|1|1|3|143|71 |
| chr3_3 | exon | 63406860 | 63407133 | 63406860 | ID=Msa0463850-mRNA-1:exon:13831;Parent=Msa0463850-mRNA-1 |
| chr3_3 | exon | 63407272 | 63407347 | 63407272 | ID=Msa0463850-mRNA-1:exon:13830;Parent=Msa0463850-mRNA-1 |
| chr3_3 | exon | 63407440 | 63407488 | 63407440 | ID=Msa0463850-mRNA-1:exon:13829;Parent=Msa0463850-mRNA-1 |
| chr3_3 | five_prime_UTR | 63407449 | 63407488 | 63407449 | ID=Msa0463850-mRNA-1:five_prime_utr;Parent=Msa0463850-mRNA-1 |
| chr3_3 | CDS | 63407440 | 63407448 | 63407440 | ID=Msa0463850-mRNA-1:cds;Parent=Msa0463850-mRNA-1 |
| chr3_3 | CDS | 63407272 | 63407347 | 63407272 | ID=Msa0463850-mRNA-1:cds;Parent=Msa0463850-mRNA-1 |
| chr3_3 | CDS | 63407003 | 63407133 | 63407003 | ID=Msa0463850-mRNA-1:cds;Parent=Msa0463850-mRNA-1 |
| chr3_3 | three_prime_UTR | 63406860 | 63407002 | 63406860 | ID=Msa0463850-mRNA-1:three_prime_utr;Parent=Msa0463850-mRNA-1 |
| Gene Sequence |
| Protein sequence |
